Multiple sequence alignment - TraesCS5B01G333800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G333800 chr5B 100.000 2692 0 0 1 2692 517580401 517577710 0.000000e+00 4972
1 TraesCS5B01G333800 chr5B 96.000 125 4 1 2209 2333 57510941 57511064 4.540000e-48 202
2 TraesCS5B01G333800 chr5B 96.000 125 4 1 2209 2333 57511480 57511603 4.540000e-48 202
3 TraesCS5B01G333800 chr5D 85.867 1868 137 55 405 2215 428391020 428389223 0.000000e+00 1869
4 TraesCS5B01G333800 chr5D 93.561 264 13 4 1 262 505741973 505741712 9.040000e-105 390
5 TraesCS5B01G333800 chr5D 96.000 125 4 1 2209 2333 6250172 6250295 4.540000e-48 202
6 TraesCS5B01G333800 chr5D 96.000 125 4 1 2209 2333 503316606 503316483 4.540000e-48 202
7 TraesCS5B01G333800 chr5D 77.273 308 55 13 336 637 432024727 432025025 1.660000e-37 167
8 TraesCS5B01G333800 chr5A 92.043 1307 65 22 697 1974 543932534 543931238 0.000000e+00 1801
9 TraesCS5B01G333800 chr5A 93.857 293 17 1 1 292 194522144 194521852 8.850000e-120 440
10 TraesCS5B01G333800 chr5A 96.000 125 4 1 2209 2333 559028846 559028969 4.540000e-48 202
11 TraesCS5B01G333800 chr5A 75.833 360 68 17 300 647 547713616 547713264 5.960000e-37 165
12 TraesCS5B01G333800 chr2A 93.151 292 19 1 1 291 683008201 683007910 6.890000e-116 427
13 TraesCS5B01G333800 chr2A 77.049 305 57 12 335 635 49759724 49760019 2.140000e-36 163
14 TraesCS5B01G333800 chr1D 91.419 303 24 2 1 302 431964248 431964549 5.360000e-112 414
15 TraesCS5B01G333800 chr1D 79.866 298 52 6 350 644 466406832 466407124 7.550000e-51 211
16 TraesCS5B01G333800 chr3B 91.837 294 23 1 1 293 582990545 582990252 2.490000e-110 409
17 TraesCS5B01G333800 chr3B 95.376 173 5 3 2344 2514 187334143 187333972 3.420000e-69 272
18 TraesCS5B01G333800 chr3B 95.322 171 7 1 2344 2513 432979260 432979090 1.230000e-68 270
19 TraesCS5B01G333800 chr7D 91.497 294 24 1 1 293 429799458 429799165 1.160000e-108 403
20 TraesCS5B01G333800 chr7D 98.788 165 1 1 2348 2511 561004101 561004265 2.620000e-75 292
21 TraesCS5B01G333800 chr7D 80.519 308 45 14 344 644 475155097 475155396 3.490000e-54 222
22 TraesCS5B01G333800 chr7D 75.862 319 69 6 321 637 25513261 25513573 3.590000e-34 156
23 TraesCS5B01G333800 chr4A 89.667 300 29 2 1 299 556443568 556443270 5.440000e-102 381
24 TraesCS5B01G333800 chr6D 91.039 279 24 1 23 300 417924081 417923803 2.530000e-100 375
25 TraesCS5B01G333800 chr6D 80.201 298 50 8 350 644 463789799 463789508 5.840000e-52 215
26 TraesCS5B01G333800 chr6D 96.000 125 4 1 2209 2333 283217227 283217104 4.540000e-48 202
27 TraesCS5B01G333800 chr7A 92.045 264 17 4 1 262 584080776 584081037 4.230000e-98 368
28 TraesCS5B01G333800 chr7A 96.000 125 4 1 2209 2333 512926153 512926276 4.540000e-48 202
29 TraesCS5B01G333800 chr7B 97.041 169 4 1 2345 2512 34678215 34678047 1.580000e-72 283
30 TraesCS5B01G333800 chr6B 96.450 169 4 2 2349 2516 567476500 567476667 7.340000e-71 278
31 TraesCS5B01G333800 chr6B 95.808 167 6 1 2346 2511 25044196 25044030 4.420000e-68 268
32 TraesCS5B01G333800 chr6B 78.078 333 53 17 321 644 31939766 31940087 2.740000e-45 193
33 TraesCS5B01G333800 chr2B 96.951 164 4 1 2349 2511 521293078 521293241 9.500000e-70 274
34 TraesCS5B01G333800 chr4B 94.253 174 8 2 2342 2514 564660785 564660957 5.710000e-67 265
35 TraesCS5B01G333800 chr4B 80.252 238 42 5 335 570 17070533 17070299 9.910000e-40 174
36 TraesCS5B01G333800 chrUn 92.778 180 11 2 2335 2513 115400716 115400894 2.660000e-65 259
37 TraesCS5B01G333800 chr3D 80.201 298 52 6 350 644 24569416 24569709 1.620000e-52 217
38 TraesCS5B01G333800 chr3D 78.676 272 57 1 300 570 90832020 90831749 2.130000e-41 180
39 TraesCS5B01G333800 chr3A 80.066 301 53 6 345 643 49327083 49327378 1.620000e-52 217
40 TraesCS5B01G333800 chr2D 80.201 298 52 6 354 648 206258075 206257782 1.620000e-52 217
41 TraesCS5B01G333800 chr1A 79.866 298 53 6 350 644 556086225 556086518 7.550000e-51 211
42 TraesCS5B01G333800 chr1A 96.000 125 4 1 2209 2333 554485125 554485002 4.540000e-48 202
43 TraesCS5B01G333800 chr4D 79.479 307 46 15 350 648 19338723 19339020 4.540000e-48 202
44 TraesCS5B01G333800 chr4D 96.000 125 4 1 2209 2333 19903823 19903700 4.540000e-48 202
45 TraesCS5B01G333800 chr4D 80.672 238 39 7 321 554 414044167 414044401 7.660000e-41 178
46 TraesCS5B01G333800 chr6A 79.424 243 49 1 313 554 374426455 374426213 1.280000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G333800 chr5B 517577710 517580401 2691 True 4972 4972 100.000 1 2692 1 chr5B.!!$R1 2691
1 TraesCS5B01G333800 chr5B 57510941 57511603 662 False 202 202 96.000 2209 2333 2 chr5B.!!$F1 124
2 TraesCS5B01G333800 chr5D 428389223 428391020 1797 True 1869 1869 85.867 405 2215 1 chr5D.!!$R1 1810
3 TraesCS5B01G333800 chr5A 543931238 543932534 1296 True 1801 1801 92.043 697 1974 1 chr5A.!!$R2 1277

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
376 377 0.107654 CAGGTTGGACCCTTCCGATC 60.108 60.0 0.0 0.0 46.37 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2249 2304 0.537653 TTGGCAATGGGTCGACGATA 59.462 50.0 9.92 0.0 0.0 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.292159 AGCCCGACGCAAAAACCC 61.292 61.111 0.00 0.00 41.38 4.11
18 19 3.597728 GCCCGACGCAAAAACCCA 61.598 61.111 0.00 0.00 37.47 4.51
19 20 2.642700 CCCGACGCAAAAACCCAG 59.357 61.111 0.00 0.00 0.00 4.45
20 21 2.642700 CCGACGCAAAAACCCAGG 59.357 61.111 0.00 0.00 0.00 4.45
21 22 2.050442 CGACGCAAAAACCCAGGC 60.050 61.111 0.00 0.00 0.00 4.85
22 23 2.338620 GACGCAAAAACCCAGGCC 59.661 61.111 0.00 0.00 0.00 5.19
23 24 3.220999 GACGCAAAAACCCAGGCCC 62.221 63.158 0.00 0.00 0.00 5.80
24 25 3.230245 CGCAAAAACCCAGGCCCA 61.230 61.111 0.00 0.00 0.00 5.36
25 26 2.743060 GCAAAAACCCAGGCCCAG 59.257 61.111 0.00 0.00 0.00 4.45
26 27 2.882677 GCAAAAACCCAGGCCCAGG 61.883 63.158 7.12 7.12 0.00 4.45
27 28 2.526624 AAAAACCCAGGCCCAGGC 60.527 61.111 8.60 0.00 41.06 4.85
54 55 3.402681 CCTGACCATCGGGCCTGT 61.403 66.667 12.43 0.00 35.89 4.00
55 56 2.671070 CTGACCATCGGGCCTGTT 59.329 61.111 12.43 0.00 37.90 3.16
56 57 1.002134 CTGACCATCGGGCCTGTTT 60.002 57.895 12.43 0.00 37.90 2.83
57 58 0.609131 CTGACCATCGGGCCTGTTTT 60.609 55.000 12.43 0.00 37.90 2.43
58 59 0.608035 TGACCATCGGGCCTGTTTTC 60.608 55.000 12.43 4.96 37.90 2.29
59 60 0.322546 GACCATCGGGCCTGTTTTCT 60.323 55.000 12.43 0.00 37.90 2.52
60 61 0.988832 ACCATCGGGCCTGTTTTCTA 59.011 50.000 12.43 0.00 37.90 2.10
61 62 1.065418 ACCATCGGGCCTGTTTTCTAG 60.065 52.381 12.43 0.00 37.90 2.43
62 63 1.668419 CATCGGGCCTGTTTTCTAGG 58.332 55.000 12.43 0.00 38.39 3.02
68 69 3.460648 CCTGTTTTCTAGGCCCGAG 57.539 57.895 0.00 0.00 0.00 4.63
69 70 0.744771 CCTGTTTTCTAGGCCCGAGC 60.745 60.000 0.00 0.00 38.76 5.03
85 86 4.476752 GCCCGGCCCGAACATGTA 62.477 66.667 3.71 0.00 0.00 2.29
86 87 2.269562 CCCGGCCCGAACATGTAA 59.730 61.111 3.71 0.00 0.00 2.41
87 88 1.377463 CCCGGCCCGAACATGTAAA 60.377 57.895 3.71 0.00 0.00 2.01
88 89 0.961358 CCCGGCCCGAACATGTAAAA 60.961 55.000 3.71 0.00 0.00 1.52
89 90 0.450184 CCGGCCCGAACATGTAAAAG 59.550 55.000 3.71 0.00 0.00 2.27
90 91 0.179174 CGGCCCGAACATGTAAAAGC 60.179 55.000 0.00 0.08 0.00 3.51
91 92 0.172578 GGCCCGAACATGTAAAAGCC 59.827 55.000 12.45 12.45 0.00 4.35
92 93 0.172578 GCCCGAACATGTAAAAGCCC 59.827 55.000 0.00 0.00 0.00 5.19
93 94 0.450184 CCCGAACATGTAAAAGCCCG 59.550 55.000 0.00 0.00 0.00 6.13
94 95 1.161843 CCGAACATGTAAAAGCCCGT 58.838 50.000 0.00 0.00 0.00 5.28
95 96 1.129811 CCGAACATGTAAAAGCCCGTC 59.870 52.381 0.00 0.00 0.00 4.79
96 97 1.201877 CGAACATGTAAAAGCCCGTCG 60.202 52.381 0.00 0.00 0.00 5.12
97 98 1.129811 GAACATGTAAAAGCCCGTCGG 59.870 52.381 3.60 3.60 0.00 4.79
132 133 0.591659 GGCACGACCTTCAGAAAACC 59.408 55.000 0.00 0.00 34.51 3.27
133 134 0.234884 GCACGACCTTCAGAAAACCG 59.765 55.000 0.00 0.00 0.00 4.44
134 135 0.234884 CACGACCTTCAGAAAACCGC 59.765 55.000 0.00 0.00 0.00 5.68
135 136 0.179067 ACGACCTTCAGAAAACCGCA 60.179 50.000 0.00 0.00 0.00 5.69
136 137 0.941542 CGACCTTCAGAAAACCGCAA 59.058 50.000 0.00 0.00 0.00 4.85
137 138 1.332375 CGACCTTCAGAAAACCGCAAA 59.668 47.619 0.00 0.00 0.00 3.68
138 139 2.223386 CGACCTTCAGAAAACCGCAAAA 60.223 45.455 0.00 0.00 0.00 2.44
139 140 3.732471 CGACCTTCAGAAAACCGCAAAAA 60.732 43.478 0.00 0.00 0.00 1.94
140 141 3.517602 ACCTTCAGAAAACCGCAAAAAC 58.482 40.909 0.00 0.00 0.00 2.43
141 142 2.533942 CCTTCAGAAAACCGCAAAAACG 59.466 45.455 0.00 0.00 0.00 3.60
142 143 3.430931 CTTCAGAAAACCGCAAAAACGA 58.569 40.909 0.00 0.00 34.06 3.85
143 144 2.788030 TCAGAAAACCGCAAAAACGAC 58.212 42.857 0.00 0.00 34.06 4.34
144 145 1.511147 CAGAAAACCGCAAAAACGACG 59.489 47.619 0.00 0.00 34.06 5.12
148 149 4.693525 CCGCAAAAACGACGGGCC 62.694 66.667 0.00 0.00 43.23 5.80
149 150 4.693525 CGCAAAAACGACGGGCCC 62.694 66.667 13.57 13.57 34.06 5.80
150 151 4.693525 GCAAAAACGACGGGCCCG 62.694 66.667 42.17 42.17 46.03 6.13
151 152 4.032987 CAAAAACGACGGGCCCGG 62.033 66.667 44.99 31.45 44.69 5.73
189 190 2.879026 CCTTCGGGCTTAAAATCTAGGC 59.121 50.000 0.00 0.00 36.31 3.93
193 194 2.632987 GGCTTAAAATCTAGGCCCGA 57.367 50.000 0.00 0.00 37.12 5.14
194 195 2.495084 GGCTTAAAATCTAGGCCCGAG 58.505 52.381 0.00 0.00 37.12 4.63
195 196 1.874231 GCTTAAAATCTAGGCCCGAGC 59.126 52.381 0.00 0.00 38.76 5.03
240 241 3.428282 CCGGGTCGGGCTTTTTCG 61.428 66.667 0.00 0.00 44.15 3.46
241 242 3.428282 CGGGTCGGGCTTTTTCGG 61.428 66.667 0.00 0.00 0.00 4.30
242 243 3.060000 GGGTCGGGCTTTTTCGGG 61.060 66.667 0.00 0.00 0.00 5.14
243 244 3.744719 GGTCGGGCTTTTTCGGGC 61.745 66.667 0.00 0.00 0.00 6.13
244 245 3.744719 GTCGGGCTTTTTCGGGCC 61.745 66.667 0.00 0.00 46.89 5.80
249 250 3.744719 GCTTTTTCGGGCCGGGTC 61.745 66.667 27.98 5.95 0.00 4.46
250 251 2.281900 CTTTTTCGGGCCGGGTCA 60.282 61.111 27.98 2.78 0.00 4.02
251 252 2.281900 TTTTTCGGGCCGGGTCAG 60.282 61.111 27.98 0.00 0.00 3.51
252 253 3.853698 TTTTTCGGGCCGGGTCAGG 62.854 63.158 27.98 0.00 0.00 3.86
287 288 4.066139 GGCTTCCCATGGCCAGGT 62.066 66.667 17.55 0.00 46.84 4.00
288 289 2.440980 GCTTCCCATGGCCAGGTC 60.441 66.667 17.55 1.30 0.00 3.85
289 290 2.988839 GCTTCCCATGGCCAGGTCT 61.989 63.158 17.55 0.00 0.00 3.85
290 291 1.635817 GCTTCCCATGGCCAGGTCTA 61.636 60.000 17.55 0.00 0.00 2.59
291 292 0.471617 CTTCCCATGGCCAGGTCTAG 59.528 60.000 17.55 6.09 0.00 2.43
292 293 0.253160 TTCCCATGGCCAGGTCTAGT 60.253 55.000 17.55 0.00 0.00 2.57
293 294 0.691078 TCCCATGGCCAGGTCTAGTC 60.691 60.000 17.55 0.00 0.00 2.59
294 295 0.692419 CCCATGGCCAGGTCTAGTCT 60.692 60.000 17.55 0.00 0.00 3.24
295 296 1.413082 CCCATGGCCAGGTCTAGTCTA 60.413 57.143 17.55 0.00 0.00 2.59
296 297 1.967066 CCATGGCCAGGTCTAGTCTAG 59.033 57.143 17.55 0.00 0.00 2.43
297 298 1.342819 CATGGCCAGGTCTAGTCTAGC 59.657 57.143 13.05 0.00 0.00 3.42
298 299 0.335019 TGGCCAGGTCTAGTCTAGCA 59.665 55.000 0.00 0.00 0.00 3.49
299 300 1.062886 TGGCCAGGTCTAGTCTAGCAT 60.063 52.381 0.00 0.00 0.00 3.79
300 301 1.616374 GGCCAGGTCTAGTCTAGCATC 59.384 57.143 0.00 0.00 0.00 3.91
301 302 1.268352 GCCAGGTCTAGTCTAGCATCG 59.732 57.143 1.60 0.00 0.00 3.84
302 303 1.883275 CCAGGTCTAGTCTAGCATCGG 59.117 57.143 1.60 0.00 0.00 4.18
303 304 2.577700 CAGGTCTAGTCTAGCATCGGT 58.422 52.381 1.60 0.00 0.00 4.69
304 305 2.550606 CAGGTCTAGTCTAGCATCGGTC 59.449 54.545 1.60 0.00 0.00 4.79
305 306 1.532007 GGTCTAGTCTAGCATCGGTCG 59.468 57.143 1.60 0.00 0.00 4.79
306 307 2.481854 GTCTAGTCTAGCATCGGTCGA 58.518 52.381 1.60 0.00 0.00 4.20
307 308 2.221517 GTCTAGTCTAGCATCGGTCGAC 59.778 54.545 7.13 7.13 0.00 4.20
308 309 2.159000 TCTAGTCTAGCATCGGTCGACA 60.159 50.000 18.91 0.00 30.02 4.35
309 310 1.681538 AGTCTAGCATCGGTCGACAT 58.318 50.000 18.91 0.00 30.02 3.06
310 311 2.025155 AGTCTAGCATCGGTCGACATT 58.975 47.619 18.91 0.00 30.02 2.71
311 312 3.211865 AGTCTAGCATCGGTCGACATTA 58.788 45.455 18.91 1.71 30.02 1.90
312 313 3.251245 AGTCTAGCATCGGTCGACATTAG 59.749 47.826 18.91 8.94 30.02 1.73
313 314 3.003482 GTCTAGCATCGGTCGACATTAGT 59.997 47.826 18.91 0.00 0.00 2.24
314 315 2.493713 AGCATCGGTCGACATTAGTC 57.506 50.000 18.91 1.45 41.46 2.59
315 316 2.025155 AGCATCGGTCGACATTAGTCT 58.975 47.619 18.91 3.87 42.73 3.24
316 317 2.427453 AGCATCGGTCGACATTAGTCTT 59.573 45.455 18.91 0.00 42.73 3.01
317 318 2.789893 GCATCGGTCGACATTAGTCTTC 59.210 50.000 18.91 0.00 42.73 2.87
318 319 3.733988 GCATCGGTCGACATTAGTCTTCA 60.734 47.826 18.91 0.00 42.73 3.02
319 320 4.421058 CATCGGTCGACATTAGTCTTCAA 58.579 43.478 18.91 0.00 42.73 2.69
320 321 4.713824 TCGGTCGACATTAGTCTTCAAT 57.286 40.909 18.91 0.00 42.73 2.57
321 322 4.421058 TCGGTCGACATTAGTCTTCAATG 58.579 43.478 18.91 0.00 42.73 2.82
322 323 3.551890 CGGTCGACATTAGTCTTCAATGG 59.448 47.826 18.91 0.00 42.73 3.16
323 324 4.676986 CGGTCGACATTAGTCTTCAATGGA 60.677 45.833 18.91 0.00 42.73 3.41
324 325 5.360591 GGTCGACATTAGTCTTCAATGGAT 58.639 41.667 18.91 0.00 42.73 3.41
325 326 5.463724 GGTCGACATTAGTCTTCAATGGATC 59.536 44.000 18.91 0.00 42.73 3.36
326 327 6.276847 GTCGACATTAGTCTTCAATGGATCT 58.723 40.000 11.55 0.00 42.73 2.75
327 328 6.419413 GTCGACATTAGTCTTCAATGGATCTC 59.581 42.308 11.55 0.00 42.73 2.75
328 329 5.694006 CGACATTAGTCTTCAATGGATCTCC 59.306 44.000 0.00 0.00 42.73 3.71
329 330 6.586344 GACATTAGTCTTCAATGGATCTCCA 58.414 40.000 0.49 0.49 45.07 3.86
344 345 5.817296 TGGATCTCCATGTATTCAGTTTTCG 59.183 40.000 0.00 0.00 42.01 3.46
345 346 5.817816 GGATCTCCATGTATTCAGTTTTCGT 59.182 40.000 0.00 0.00 35.64 3.85
346 347 6.316390 GGATCTCCATGTATTCAGTTTTCGTT 59.684 38.462 0.00 0.00 35.64 3.85
347 348 6.721571 TCTCCATGTATTCAGTTTTCGTTC 57.278 37.500 0.00 0.00 0.00 3.95
348 349 6.227522 TCTCCATGTATTCAGTTTTCGTTCA 58.772 36.000 0.00 0.00 0.00 3.18
349 350 6.878923 TCTCCATGTATTCAGTTTTCGTTCAT 59.121 34.615 0.00 0.00 0.00 2.57
350 351 6.841119 TCCATGTATTCAGTTTTCGTTCATG 58.159 36.000 0.00 0.00 0.00 3.07
351 352 6.429692 TCCATGTATTCAGTTTTCGTTCATGT 59.570 34.615 0.00 0.00 0.00 3.21
352 353 6.742718 CCATGTATTCAGTTTTCGTTCATGTC 59.257 38.462 0.00 0.00 0.00 3.06
353 354 7.361201 CCATGTATTCAGTTTTCGTTCATGTCT 60.361 37.037 0.00 0.00 0.00 3.41
354 355 7.117241 TGTATTCAGTTTTCGTTCATGTCTC 57.883 36.000 0.00 0.00 0.00 3.36
355 356 6.929049 TGTATTCAGTTTTCGTTCATGTCTCT 59.071 34.615 0.00 0.00 0.00 3.10
356 357 8.085909 TGTATTCAGTTTTCGTTCATGTCTCTA 58.914 33.333 0.00 0.00 0.00 2.43
357 358 6.764877 TTCAGTTTTCGTTCATGTCTCTAC 57.235 37.500 0.00 0.00 0.00 2.59
358 359 5.838529 TCAGTTTTCGTTCATGTCTCTACA 58.161 37.500 0.00 0.00 40.69 2.74
359 360 5.920840 TCAGTTTTCGTTCATGTCTCTACAG 59.079 40.000 0.00 0.00 39.49 2.74
360 361 5.119279 CAGTTTTCGTTCATGTCTCTACAGG 59.881 44.000 0.00 0.00 39.49 4.00
361 362 4.866508 TTTCGTTCATGTCTCTACAGGT 57.133 40.909 0.00 0.00 39.49 4.00
362 363 4.866508 TTCGTTCATGTCTCTACAGGTT 57.133 40.909 0.00 0.00 39.49 3.50
363 364 4.174411 TCGTTCATGTCTCTACAGGTTG 57.826 45.455 0.00 0.00 39.49 3.77
364 365 3.056821 TCGTTCATGTCTCTACAGGTTGG 60.057 47.826 0.00 0.00 39.49 3.77
365 366 3.056821 CGTTCATGTCTCTACAGGTTGGA 60.057 47.826 0.00 0.00 39.49 3.53
366 367 4.246458 GTTCATGTCTCTACAGGTTGGAC 58.754 47.826 0.00 0.00 39.49 4.02
367 368 2.832129 TCATGTCTCTACAGGTTGGACC 59.168 50.000 0.00 0.00 39.49 4.46
368 369 1.640917 TGTCTCTACAGGTTGGACCC 58.359 55.000 0.00 0.00 39.75 4.46
369 370 1.149288 TGTCTCTACAGGTTGGACCCT 59.851 52.381 0.00 0.00 39.75 4.34
370 371 2.258109 GTCTCTACAGGTTGGACCCTT 58.742 52.381 0.00 0.00 39.75 3.95
371 372 2.234168 GTCTCTACAGGTTGGACCCTTC 59.766 54.545 0.00 0.00 39.75 3.46
372 373 1.555533 CTCTACAGGTTGGACCCTTCC 59.444 57.143 0.00 0.00 39.75 3.46
373 374 0.249398 CTACAGGTTGGACCCTTCCG 59.751 60.000 0.00 0.00 46.37 4.30
374 375 0.178926 TACAGGTTGGACCCTTCCGA 60.179 55.000 0.00 0.00 46.37 4.55
375 376 0.840722 ACAGGTTGGACCCTTCCGAT 60.841 55.000 0.00 0.00 46.37 4.18
376 377 0.107654 CAGGTTGGACCCTTCCGATC 60.108 60.000 0.00 0.00 46.37 3.69
377 378 0.252742 AGGTTGGACCCTTCCGATCT 60.253 55.000 0.00 0.00 46.37 2.75
378 379 1.007963 AGGTTGGACCCTTCCGATCTA 59.992 52.381 0.00 0.00 44.28 1.98
379 380 1.138464 GGTTGGACCCTTCCGATCTAC 59.862 57.143 0.00 0.00 46.37 2.59
380 381 1.108776 TTGGACCCTTCCGATCTACG 58.891 55.000 0.00 0.00 46.37 3.51
381 382 1.363080 GGACCCTTCCGATCTACGC 59.637 63.158 0.00 0.00 41.07 4.42
382 383 1.363080 GACCCTTCCGATCTACGCC 59.637 63.158 0.00 0.00 41.07 5.68
383 384 1.076192 ACCCTTCCGATCTACGCCT 60.076 57.895 0.00 0.00 41.07 5.52
384 385 0.184451 ACCCTTCCGATCTACGCCTA 59.816 55.000 0.00 0.00 41.07 3.93
385 386 1.203025 ACCCTTCCGATCTACGCCTAT 60.203 52.381 0.00 0.00 41.07 2.57
386 387 1.473278 CCCTTCCGATCTACGCCTATC 59.527 57.143 0.00 0.00 41.07 2.08
387 388 2.438411 CCTTCCGATCTACGCCTATCT 58.562 52.381 0.00 0.00 41.07 1.98
388 389 2.820787 CCTTCCGATCTACGCCTATCTT 59.179 50.000 0.00 0.00 41.07 2.40
389 390 3.119779 CCTTCCGATCTACGCCTATCTTC 60.120 52.174 0.00 0.00 41.07 2.87
390 391 3.136009 TCCGATCTACGCCTATCTTCA 57.864 47.619 0.00 0.00 41.07 3.02
391 392 3.687125 TCCGATCTACGCCTATCTTCAT 58.313 45.455 0.00 0.00 41.07 2.57
392 393 3.690139 TCCGATCTACGCCTATCTTCATC 59.310 47.826 0.00 0.00 41.07 2.92
393 394 3.486043 CCGATCTACGCCTATCTTCATCG 60.486 52.174 0.00 0.00 41.07 3.84
394 395 3.371285 CGATCTACGCCTATCTTCATCGA 59.629 47.826 0.00 0.00 35.08 3.59
395 396 4.654015 GATCTACGCCTATCTTCATCGAC 58.346 47.826 0.00 0.00 0.00 4.20
396 397 2.479275 TCTACGCCTATCTTCATCGACG 59.521 50.000 0.00 0.00 0.00 5.12
397 398 1.306148 ACGCCTATCTTCATCGACGA 58.694 50.000 0.00 0.00 0.00 4.20
398 399 1.002684 ACGCCTATCTTCATCGACGAC 60.003 52.381 0.00 0.00 0.00 4.34
399 400 1.676057 GCCTATCTTCATCGACGACG 58.324 55.000 0.00 0.00 41.26 5.12
400 401 1.663445 GCCTATCTTCATCGACGACGG 60.663 57.143 7.55 0.00 40.21 4.79
401 402 1.602851 CCTATCTTCATCGACGACGGT 59.397 52.381 7.55 0.00 40.21 4.83
402 403 2.033049 CCTATCTTCATCGACGACGGTT 59.967 50.000 7.55 0.00 40.21 4.44
403 404 1.909376 ATCTTCATCGACGACGGTTG 58.091 50.000 7.55 6.17 40.21 3.77
417 418 1.360192 GGTTGCTGTTCTGGTGTGC 59.640 57.895 0.00 0.00 0.00 4.57
421 422 1.227943 GCTGTTCTGGTGTGCTGGA 60.228 57.895 0.00 0.00 0.00 3.86
423 424 0.886490 CTGTTCTGGTGTGCTGGACC 60.886 60.000 0.00 0.00 0.00 4.46
424 425 1.600916 GTTCTGGTGTGCTGGACCC 60.601 63.158 0.00 0.00 31.84 4.46
426 427 3.941188 CTGGTGTGCTGGACCCGT 61.941 66.667 0.00 0.00 31.84 5.28
447 450 2.635915 TGGGTCCTTAACATGACGACTT 59.364 45.455 0.00 0.00 32.19 3.01
449 452 4.070009 GGGTCCTTAACATGACGACTTTT 58.930 43.478 0.00 0.00 32.19 2.27
450 453 4.153655 GGGTCCTTAACATGACGACTTTTC 59.846 45.833 0.00 0.00 32.19 2.29
451 454 4.753107 GGTCCTTAACATGACGACTTTTCA 59.247 41.667 0.00 0.00 32.19 2.69
455 458 6.018262 TCCTTAACATGACGACTTTTCAACTG 60.018 38.462 0.00 0.00 0.00 3.16
461 464 5.258456 TGACGACTTTTCAACTGTCTACT 57.742 39.130 0.00 0.00 0.00 2.57
462 465 6.381481 TGACGACTTTTCAACTGTCTACTA 57.619 37.500 0.00 0.00 0.00 1.82
469 472 8.732746 ACTTTTCAACTGTCTACTACAACAAT 57.267 30.769 0.00 0.00 37.74 2.71
474 477 9.781834 TTCAACTGTCTACTACAACAATTTTTG 57.218 29.630 2.77 2.77 37.74 2.44
476 479 6.735130 ACTGTCTACTACAACAATTTTTGCC 58.265 36.000 4.23 0.00 37.74 4.52
478 481 5.151389 GTCTACTACAACAATTTTTGCCCG 58.849 41.667 4.23 0.00 0.00 6.13
479 482 2.749776 ACTACAACAATTTTTGCCCGC 58.250 42.857 4.23 0.00 0.00 6.13
484 488 2.094066 CAATTTTTGCCCGCTCCGC 61.094 57.895 0.00 0.00 0.00 5.54
486 490 1.815817 AATTTTTGCCCGCTCCGCTT 61.816 50.000 0.00 0.00 0.00 4.68
500 504 2.857744 CGCTTAGGGAGGGGTAGCG 61.858 68.421 0.00 0.00 46.86 4.26
501 505 3.139565 CTTAGGGAGGGGTAGCGC 58.860 66.667 0.00 0.00 0.00 5.92
503 507 4.908487 TAGGGAGGGGTAGCGCCG 62.908 72.222 2.29 0.00 41.60 6.46
521 525 4.210304 GCGACGCACATTCGGCTC 62.210 66.667 16.42 0.00 36.96 4.70
525 529 3.918220 CGCACATTCGGCTCGCTC 61.918 66.667 0.00 0.00 0.00 5.03
526 530 3.567797 GCACATTCGGCTCGCTCC 61.568 66.667 0.00 0.00 0.00 4.70
534 538 3.123620 GGCTCGCTCCAGTGCTTG 61.124 66.667 0.00 0.00 0.00 4.01
545 549 1.080705 AGTGCTTGTAGTCGTCGCC 60.081 57.895 0.00 0.00 0.00 5.54
548 552 1.805945 GCTTGTAGTCGTCGCCAGG 60.806 63.158 0.00 0.00 0.00 4.45
551 555 2.149803 TTGTAGTCGTCGCCAGGTGG 62.150 60.000 0.00 0.00 38.53 4.61
554 558 3.986006 GTCGTCGCCAGGTGGTCA 61.986 66.667 0.00 0.00 37.57 4.02
556 560 3.041940 CGTCGCCAGGTGGTCAAC 61.042 66.667 0.00 0.00 37.57 3.18
557 561 2.426023 GTCGCCAGGTGGTCAACT 59.574 61.111 0.00 0.00 37.57 3.16
558 562 1.227853 GTCGCCAGGTGGTCAACTT 60.228 57.895 0.00 0.00 37.57 2.66
560 564 0.981183 TCGCCAGGTGGTCAACTTAT 59.019 50.000 0.00 0.00 37.57 1.73
563 567 2.359900 GCCAGGTGGTCAACTTATCTG 58.640 52.381 0.00 0.00 37.57 2.90
565 569 2.571653 CCAGGTGGTCAACTTATCTGGA 59.428 50.000 10.01 0.00 41.87 3.86
570 574 5.104900 AGGTGGTCAACTTATCTGGATGTAC 60.105 44.000 0.00 0.00 0.00 2.90
571 575 5.104900 GGTGGTCAACTTATCTGGATGTACT 60.105 44.000 0.00 0.00 0.00 2.73
572 576 6.097839 GGTGGTCAACTTATCTGGATGTACTA 59.902 42.308 0.00 0.00 0.00 1.82
573 577 7.364408 GGTGGTCAACTTATCTGGATGTACTAA 60.364 40.741 0.00 0.00 0.00 2.24
574 578 8.204836 GTGGTCAACTTATCTGGATGTACTAAT 58.795 37.037 0.00 0.00 0.00 1.73
586 590 9.878667 TCTGGATGTACTAATATTTCGTTTTGA 57.121 29.630 0.00 0.00 0.00 2.69
596 600 6.991485 ATATTTCGTTTTGAGTGTTGCTTG 57.009 33.333 0.00 0.00 0.00 4.01
597 601 3.840890 TTCGTTTTGAGTGTTGCTTGT 57.159 38.095 0.00 0.00 0.00 3.16
600 604 3.064271 TCGTTTTGAGTGTTGCTTGTACC 59.936 43.478 0.00 0.00 0.00 3.34
611 615 0.657840 GCTTGTACCGCCATGTCATC 59.342 55.000 0.00 0.00 0.00 2.92
615 619 1.762370 TGTACCGCCATGTCATCTGAT 59.238 47.619 0.00 0.00 0.00 2.90
622 626 4.562143 CCGCCATGTCATCTGATGAATAGA 60.562 45.833 21.09 7.07 41.69 1.98
624 628 5.291371 CGCCATGTCATCTGATGAATAGATC 59.709 44.000 21.09 8.98 41.69 2.75
625 629 6.171213 GCCATGTCATCTGATGAATAGATCA 58.829 40.000 21.09 13.97 41.69 2.92
680 688 9.657419 AAAATGAGCTTAAAAGGTAATCAATGG 57.343 29.630 0.00 0.00 36.78 3.16
685 693 9.358872 GAGCTTAAAAGGTAATCAATGGAAAAG 57.641 33.333 0.00 0.00 36.78 2.27
690 698 7.855784 AAAGGTAATCAATGGAAAAGAAGGT 57.144 32.000 0.00 0.00 0.00 3.50
691 699 7.468141 AAGGTAATCAATGGAAAAGAAGGTC 57.532 36.000 0.00 0.00 0.00 3.85
692 700 6.794534 AGGTAATCAATGGAAAAGAAGGTCT 58.205 36.000 0.00 0.00 0.00 3.85
787 804 0.747255 TGTCCGAGCATAGCCTCTTC 59.253 55.000 0.00 0.00 0.00 2.87
942 963 1.240256 AAATCTTAAACCCGCACGCA 58.760 45.000 0.00 0.00 0.00 5.24
1612 1639 7.823745 ATTGGTAGCTTCTTTTCTTTTCTGA 57.176 32.000 0.00 0.00 0.00 3.27
1614 1641 7.823745 TGGTAGCTTCTTTTCTTTTCTGAAT 57.176 32.000 0.00 0.00 0.00 2.57
1615 1642 7.651808 TGGTAGCTTCTTTTCTTTTCTGAATG 58.348 34.615 0.00 0.00 0.00 2.67
1616 1643 7.087007 GGTAGCTTCTTTTCTTTTCTGAATGG 58.913 38.462 0.00 0.00 0.00 3.16
1644 1672 3.745975 TGTTCTTCATTTGTACTGCTCCG 59.254 43.478 0.00 0.00 0.00 4.63
1657 1685 1.816835 CTGCTCCGTACCTAGTTGTCA 59.183 52.381 0.00 0.00 0.00 3.58
1747 1776 2.771089 TGCAGTGTTCTGGATTCAGTC 58.229 47.619 0.00 0.00 41.57 3.51
1748 1777 2.369860 TGCAGTGTTCTGGATTCAGTCT 59.630 45.455 0.00 0.00 41.57 3.24
1749 1778 2.740981 GCAGTGTTCTGGATTCAGTCTG 59.259 50.000 0.00 7.26 41.57 3.51
1763 1792 2.429250 TCAGTCTGAACAACCTCGACAA 59.571 45.455 0.00 0.00 0.00 3.18
1779 1808 8.687292 ACCTCGACAATGTAGTTATCTGTATA 57.313 34.615 0.00 0.00 0.00 1.47
1858 1887 5.063944 CAGTGTTACTAGTGTCAATGCATCC 59.936 44.000 5.39 0.00 0.00 3.51
1879 1917 9.760660 GCATCCGAAATTATGTAATAGATTCAC 57.239 33.333 0.00 0.00 30.30 3.18
1900 1953 3.006110 ACAACTGCCATTTGGAATGACTG 59.994 43.478 0.00 0.00 37.39 3.51
1903 1956 3.642848 ACTGCCATTTGGAATGACTGTTT 59.357 39.130 0.00 0.00 37.39 2.83
1950 2003 9.698309 GTGTATAAACATCTAGTGCATATCAGT 57.302 33.333 0.00 0.00 38.08 3.41
1988 2041 4.015872 TGTCCCTTTGGCTAGTTTGTAG 57.984 45.455 0.00 0.00 0.00 2.74
2054 2107 1.637086 CGCGTTGTGCAATAACTTTCG 59.363 47.619 0.00 9.02 46.97 3.46
2056 2109 3.040099 GCGTTGTGCAATAACTTTCGTT 58.960 40.909 11.83 0.00 45.45 3.85
2057 2110 3.484285 GCGTTGTGCAATAACTTTCGTTT 59.516 39.130 11.83 0.00 45.45 3.60
2059 2112 5.171695 GCGTTGTGCAATAACTTTCGTTTAA 59.828 36.000 11.83 0.00 45.45 1.52
2060 2113 6.610641 GCGTTGTGCAATAACTTTCGTTTAAG 60.611 38.462 11.83 0.00 45.45 1.85
2061 2114 6.568939 GTTGTGCAATAACTTTCGTTTAAGC 58.431 36.000 7.62 0.00 34.84 3.09
2084 2139 4.766970 GTGTGCTCACTGCTCAGT 57.233 55.556 11.58 0.00 44.44 3.41
2085 2140 3.894257 GTGTGCTCACTGCTCAGTA 57.106 52.632 11.58 0.00 44.44 2.74
2086 2141 2.154854 GTGTGCTCACTGCTCAGTAA 57.845 50.000 11.58 0.00 44.44 2.24
2087 2142 1.795286 GTGTGCTCACTGCTCAGTAAC 59.205 52.381 11.58 0.89 44.44 2.50
2088 2143 1.270305 TGTGCTCACTGCTCAGTAACC 60.270 52.381 1.79 0.00 40.20 2.85
2089 2144 1.001406 GTGCTCACTGCTCAGTAACCT 59.999 52.381 1.79 0.00 40.20 3.50
2090 2145 2.231478 GTGCTCACTGCTCAGTAACCTA 59.769 50.000 1.79 0.00 40.20 3.08
2091 2146 2.493675 TGCTCACTGCTCAGTAACCTAG 59.506 50.000 1.79 0.00 40.20 3.02
2092 2147 2.494073 GCTCACTGCTCAGTAACCTAGT 59.506 50.000 1.79 0.00 40.20 2.57
2093 2148 3.695060 GCTCACTGCTCAGTAACCTAGTA 59.305 47.826 1.79 0.00 40.20 1.82
2094 2149 4.339814 GCTCACTGCTCAGTAACCTAGTAT 59.660 45.833 1.79 0.00 40.20 2.12
2095 2150 5.506649 GCTCACTGCTCAGTAACCTAGTATC 60.507 48.000 1.79 0.00 40.20 2.24
2096 2151 5.506708 TCACTGCTCAGTAACCTAGTATCA 58.493 41.667 1.79 0.00 40.20 2.15
2097 2152 6.129874 TCACTGCTCAGTAACCTAGTATCAT 58.870 40.000 1.79 0.00 40.20 2.45
2098 2153 7.287810 TCACTGCTCAGTAACCTAGTATCATA 58.712 38.462 1.79 0.00 40.20 2.15
2099 2154 7.778382 TCACTGCTCAGTAACCTAGTATCATAA 59.222 37.037 1.79 0.00 40.20 1.90
2100 2155 8.580720 CACTGCTCAGTAACCTAGTATCATAAT 58.419 37.037 1.79 0.00 40.20 1.28
2101 2156 8.580720 ACTGCTCAGTAACCTAGTATCATAATG 58.419 37.037 0.00 0.00 40.43 1.90
2102 2157 8.478775 TGCTCAGTAACCTAGTATCATAATGT 57.521 34.615 0.00 0.00 0.00 2.71
2103 2158 8.577296 TGCTCAGTAACCTAGTATCATAATGTC 58.423 37.037 0.00 0.00 0.00 3.06
2104 2159 8.798402 GCTCAGTAACCTAGTATCATAATGTCT 58.202 37.037 0.00 0.00 0.00 3.41
2120 2175 8.243426 TCATAATGTCTTCAAGTAAAATGCACC 58.757 33.333 0.00 0.00 0.00 5.01
2178 2233 3.113260 AGTACTGAAACTGGAGCACAC 57.887 47.619 0.00 0.00 0.00 3.82
2190 2245 1.869767 GGAGCACACACAGAAACTCAG 59.130 52.381 0.00 0.00 0.00 3.35
2192 2247 1.134280 AGCACACACAGAAACTCAGCT 60.134 47.619 0.00 0.00 0.00 4.24
2199 2254 3.004106 ACACAGAAACTCAGCTGAAATGC 59.996 43.478 18.85 8.06 36.07 3.56
2249 2304 5.804639 GGGATTGTTTAAGCAATTCCCTTT 58.195 37.500 24.93 1.98 44.83 3.11
2261 2316 1.559368 TTCCCTTTATCGTCGACCCA 58.441 50.000 10.58 0.00 0.00 4.51
2295 2350 6.813649 TGATTCTGACTTGTTTTATCGAGAGG 59.186 38.462 0.00 0.00 0.00 3.69
2301 2356 4.773149 ACTTGTTTTATCGAGAGGAGAGGT 59.227 41.667 0.00 0.00 0.00 3.85
2329 2384 1.882623 GCAAAGGCTTGTAACTCTGCT 59.117 47.619 0.00 0.00 36.96 4.24
2330 2385 2.351157 GCAAAGGCTTGTAACTCTGCTG 60.351 50.000 0.00 0.00 36.96 4.41
2332 2387 3.492102 AAGGCTTGTAACTCTGCTGAA 57.508 42.857 0.00 0.00 0.00 3.02
2333 2388 3.492102 AGGCTTGTAACTCTGCTGAAA 57.508 42.857 0.00 0.00 0.00 2.69
2334 2389 3.820557 AGGCTTGTAACTCTGCTGAAAA 58.179 40.909 0.00 0.00 0.00 2.29
2337 2392 4.036852 GGCTTGTAACTCTGCTGAAAAAGT 59.963 41.667 0.00 0.00 0.00 2.66
2338 2393 5.208503 GCTTGTAACTCTGCTGAAAAAGTC 58.791 41.667 0.00 0.00 0.00 3.01
2356 2411 9.752961 GAAAAAGTCAGATTATACTACTCCCTC 57.247 37.037 0.00 0.00 0.00 4.30
2358 2413 5.562635 AGTCAGATTATACTACTCCCTCCG 58.437 45.833 0.00 0.00 0.00 4.63
2359 2414 5.073417 AGTCAGATTATACTACTCCCTCCGT 59.927 44.000 0.00 0.00 0.00 4.69
2360 2415 5.769162 GTCAGATTATACTACTCCCTCCGTT 59.231 44.000 0.00 0.00 0.00 4.44
2362 2417 5.183522 CAGATTATACTACTCCCTCCGTTCC 59.816 48.000 0.00 0.00 0.00 3.62
2363 2418 4.803329 TTATACTACTCCCTCCGTTCCT 57.197 45.455 0.00 0.00 0.00 3.36
2364 2419 5.912149 TTATACTACTCCCTCCGTTCCTA 57.088 43.478 0.00 0.00 0.00 2.94
2375 2533 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2376 2534 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2378 2536 7.415206 CCCTCCGTTCCTAAATATTTGTCTTTG 60.415 40.741 11.05 0.00 0.00 2.77
2380 2538 9.158233 CTCCGTTCCTAAATATTTGTCTTTGTA 57.842 33.333 11.05 0.00 0.00 2.41
2381 2539 9.158233 TCCGTTCCTAAATATTTGTCTTTGTAG 57.842 33.333 11.05 0.00 0.00 2.74
2394 2552 9.956720 ATTTGTCTTTGTAGAGATTTCAACAAG 57.043 29.630 0.00 0.00 33.70 3.16
2396 2554 7.919690 TGTCTTTGTAGAGATTTCAACAAGTG 58.080 34.615 0.00 0.00 33.70 3.16
2398 2556 8.064814 GTCTTTGTAGAGATTTCAACAAGTGAC 58.935 37.037 0.00 0.00 35.39 3.67
2401 2559 9.778741 TTTGTAGAGATTTCAACAAGTGACTAT 57.221 29.630 0.00 0.00 35.39 2.12
2406 2564 9.737427 AGAGATTTCAACAAGTGACTATATACG 57.263 33.333 0.00 0.00 35.39 3.06
2407 2565 8.873215 AGATTTCAACAAGTGACTATATACGG 57.127 34.615 0.00 0.00 35.39 4.02
2410 2568 5.828747 TCAACAAGTGACTATATACGGAGC 58.171 41.667 0.00 0.00 0.00 4.70
2411 2569 5.358725 TCAACAAGTGACTATATACGGAGCA 59.641 40.000 0.00 0.00 0.00 4.26
2412 2570 5.847111 ACAAGTGACTATATACGGAGCAA 57.153 39.130 0.00 0.00 0.00 3.91
2413 2571 6.216801 ACAAGTGACTATATACGGAGCAAA 57.783 37.500 0.00 0.00 0.00 3.68
2415 2573 7.272978 ACAAGTGACTATATACGGAGCAAAAT 58.727 34.615 0.00 0.00 0.00 1.82
2416 2574 7.224753 ACAAGTGACTATATACGGAGCAAAATG 59.775 37.037 0.00 0.00 0.00 2.32
2417 2575 7.050970 AGTGACTATATACGGAGCAAAATGA 57.949 36.000 0.00 0.00 0.00 2.57
2420 2578 6.923508 TGACTATATACGGAGCAAAATGAGTG 59.076 38.462 0.00 0.00 0.00 3.51
2421 2579 7.050970 ACTATATACGGAGCAAAATGAGTGA 57.949 36.000 0.00 0.00 0.00 3.41
2422 2580 7.497595 ACTATATACGGAGCAAAATGAGTGAA 58.502 34.615 0.00 0.00 0.00 3.18
2423 2581 8.150945 ACTATATACGGAGCAAAATGAGTGAAT 58.849 33.333 0.00 0.00 0.00 2.57
2424 2582 5.741388 ATACGGAGCAAAATGAGTGAATC 57.259 39.130 0.00 0.00 0.00 2.52
2425 2583 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2427 2585 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2428 2586 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2429 2587 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2470 2628 5.401531 ACATCCGTATGTAGTCACTTGTT 57.598 39.130 0.00 0.00 44.66 2.83
2473 2631 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
2474 2632 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
2477 2635 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
2484 2663 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2485 2664 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2486 2665 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2487 2666 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
2488 2667 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2507 2686 6.555463 AGACAAATATTTAGGAACGGAGGA 57.445 37.500 0.00 0.00 0.00 3.71
2508 2687 6.583562 AGACAAATATTTAGGAACGGAGGAG 58.416 40.000 0.00 0.00 0.00 3.69
2513 2692 7.672122 AATATTTAGGAACGGAGGAGTAGTT 57.328 36.000 0.00 0.00 0.00 2.24
2515 2694 5.813513 TTTAGGAACGGAGGAGTAGTTTT 57.186 39.130 0.00 0.00 0.00 2.43
2517 2696 6.916360 TTAGGAACGGAGGAGTAGTTTTTA 57.084 37.500 0.00 0.00 0.00 1.52
2518 2697 5.813513 AGGAACGGAGGAGTAGTTTTTAA 57.186 39.130 0.00 0.00 0.00 1.52
2520 2699 6.171213 AGGAACGGAGGAGTAGTTTTTAATG 58.829 40.000 0.00 0.00 0.00 1.90
2521 2700 6.013984 AGGAACGGAGGAGTAGTTTTTAATGA 60.014 38.462 0.00 0.00 0.00 2.57
2524 2703 9.374838 GAACGGAGGAGTAGTTTTTAATGAATA 57.625 33.333 0.00 0.00 0.00 1.75
2525 2704 8.943909 ACGGAGGAGTAGTTTTTAATGAATAG 57.056 34.615 0.00 0.00 0.00 1.73
2526 2705 8.755977 ACGGAGGAGTAGTTTTTAATGAATAGA 58.244 33.333 0.00 0.00 0.00 1.98
2527 2706 9.032420 CGGAGGAGTAGTTTTTAATGAATAGAC 57.968 37.037 0.00 0.00 0.00 2.59
2546 2725 9.884465 GAATAGACAAATTATAAGGTCATGCAC 57.116 33.333 13.80 0.00 32.79 4.57
2547 2726 8.978874 ATAGACAAATTATAAGGTCATGCACA 57.021 30.769 13.80 0.00 32.79 4.57
2549 2728 7.709947 AGACAAATTATAAGGTCATGCACATG 58.290 34.615 4.18 4.18 40.09 3.21
2550 2729 6.275335 ACAAATTATAAGGTCATGCACATGC 58.725 36.000 5.73 0.00 38.65 4.06
2569 2748 9.467258 GCACATGCATATTCTTTACATAACATT 57.533 29.630 0.00 0.00 41.59 2.71
2583 2762 9.913310 TTTACATAACATTCTATTCCATGTGGA 57.087 29.630 0.00 0.00 43.73 4.02
2586 2765 7.500227 ACATAACATTCTATTCCATGTGGACTG 59.500 37.037 0.15 0.00 45.39 3.51
2588 2767 5.431765 ACATTCTATTCCATGTGGACTGTC 58.568 41.667 0.15 0.00 45.39 3.51
2589 2768 5.045651 ACATTCTATTCCATGTGGACTGTCA 60.046 40.000 10.38 0.00 45.39 3.58
2591 2770 6.806668 TTCTATTCCATGTGGACTGTCATA 57.193 37.500 10.38 0.00 45.39 2.15
2592 2771 7.379059 TTCTATTCCATGTGGACTGTCATAT 57.621 36.000 10.38 0.00 45.39 1.78
2593 2772 6.762333 TCTATTCCATGTGGACTGTCATATG 58.238 40.000 10.38 9.96 45.39 1.78
2594 2773 3.198409 TCCATGTGGACTGTCATATGC 57.802 47.619 10.38 0.00 39.78 3.14
2595 2774 2.773661 TCCATGTGGACTGTCATATGCT 59.226 45.455 10.38 0.00 39.78 3.79
2596 2775 2.876550 CCATGTGGACTGTCATATGCTG 59.123 50.000 10.38 0.60 35.71 4.41
2597 2776 3.538591 CATGTGGACTGTCATATGCTGT 58.461 45.455 10.38 3.82 31.45 4.40
2599 2778 4.019792 TGTGGACTGTCATATGCTGTTT 57.980 40.909 10.38 0.00 0.00 2.83
2601 2780 4.935205 TGTGGACTGTCATATGCTGTTTAC 59.065 41.667 10.38 7.47 0.00 2.01
2602 2781 4.332819 GTGGACTGTCATATGCTGTTTACC 59.667 45.833 10.38 3.06 0.00 2.85
2604 2783 4.332819 GGACTGTCATATGCTGTTTACCAC 59.667 45.833 10.38 0.00 0.00 4.16
2605 2784 4.905429 ACTGTCATATGCTGTTTACCACA 58.095 39.130 0.00 0.00 0.00 4.17
2617 2796 3.508012 TGTTTACCACAGTGTTGTTGCTT 59.492 39.130 5.18 0.00 34.62 3.91
2618 2797 3.773860 TTACCACAGTGTTGTTGCTTG 57.226 42.857 5.18 0.00 34.62 4.01
2619 2798 0.173255 ACCACAGTGTTGTTGCTTGC 59.827 50.000 0.00 0.00 34.62 4.01
2620 2799 0.457035 CCACAGTGTTGTTGCTTGCT 59.543 50.000 0.00 0.00 34.62 3.91
2621 2800 1.675483 CCACAGTGTTGTTGCTTGCTA 59.325 47.619 0.00 0.00 34.62 3.49
2623 2802 3.428725 CCACAGTGTTGTTGCTTGCTAAA 60.429 43.478 0.00 0.00 34.62 1.85
2625 2804 5.507149 CCACAGTGTTGTTGCTTGCTAAATA 60.507 40.000 0.00 0.00 34.62 1.40
2626 2805 5.399301 CACAGTGTTGTTGCTTGCTAAATAC 59.601 40.000 0.00 0.00 34.62 1.89
2627 2806 5.067153 ACAGTGTTGTTGCTTGCTAAATACA 59.933 36.000 0.00 0.00 32.28 2.29
2628 2807 5.626543 CAGTGTTGTTGCTTGCTAAATACAG 59.373 40.000 0.00 0.00 0.00 2.74
2629 2808 5.299279 AGTGTTGTTGCTTGCTAAATACAGT 59.701 36.000 0.00 0.00 0.00 3.55
2635 2814 7.561251 TGTTGCTTGCTAAATACAGTAGGATA 58.439 34.615 0.00 0.00 0.00 2.59
2636 2815 7.494625 TGTTGCTTGCTAAATACAGTAGGATAC 59.505 37.037 0.00 0.00 43.47 2.24
2661 2840 7.229506 ACTGAGAAATTTGTAGCTTTACTTGCT 59.770 33.333 0.00 0.00 43.79 3.91
2662 2841 7.362662 TGAGAAATTTGTAGCTTTACTTGCTG 58.637 34.615 0.00 0.00 41.32 4.41
2664 2843 7.363431 AGAAATTTGTAGCTTTACTTGCTGTC 58.637 34.615 0.00 0.00 41.32 3.51
2668 2847 4.893608 TGTAGCTTTACTTGCTGTCATCA 58.106 39.130 0.00 0.00 41.32 3.07
2670 2849 6.639563 TGTAGCTTTACTTGCTGTCATCATA 58.360 36.000 0.00 0.00 41.32 2.15
2671 2850 7.275183 TGTAGCTTTACTTGCTGTCATCATAT 58.725 34.615 0.00 0.00 41.32 1.78
2672 2851 7.770433 TGTAGCTTTACTTGCTGTCATCATATT 59.230 33.333 0.00 0.00 41.32 1.28
2673 2852 9.261180 GTAGCTTTACTTGCTGTCATCATATTA 57.739 33.333 0.00 0.00 41.32 0.98
2674 2853 8.737168 AGCTTTACTTGCTGTCATCATATTAA 57.263 30.769 0.00 0.00 39.56 1.40
2675 2854 9.347240 AGCTTTACTTGCTGTCATCATATTAAT 57.653 29.630 0.00 0.00 39.56 1.40
2676 2855 9.956720 GCTTTACTTGCTGTCATCATATTAATT 57.043 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.292159 GGGTTTTTGCGTCGGGCT 61.292 61.111 0.00 0.00 44.05 5.19
1 2 3.551887 CTGGGTTTTTGCGTCGGGC 62.552 63.158 0.00 0.00 43.96 6.13
2 3 2.642700 CTGGGTTTTTGCGTCGGG 59.357 61.111 0.00 0.00 0.00 5.14
3 4 2.642700 CCTGGGTTTTTGCGTCGG 59.357 61.111 0.00 0.00 0.00 4.79
4 5 2.050442 GCCTGGGTTTTTGCGTCG 60.050 61.111 0.00 0.00 0.00 5.12
5 6 2.338620 GGCCTGGGTTTTTGCGTC 59.661 61.111 0.00 0.00 0.00 5.19
6 7 3.230990 GGGCCTGGGTTTTTGCGT 61.231 61.111 0.84 0.00 0.00 5.24
7 8 3.225069 CTGGGCCTGGGTTTTTGCG 62.225 63.158 4.53 0.00 0.00 4.85
8 9 2.743060 CTGGGCCTGGGTTTTTGC 59.257 61.111 4.53 0.00 0.00 3.68
9 10 2.882677 GCCTGGGCCTGGGTTTTTG 61.883 63.158 28.34 4.08 34.56 2.44
10 11 2.526624 GCCTGGGCCTGGGTTTTT 60.527 61.111 28.34 0.00 34.56 1.94
36 37 4.864334 CAGGCCCGATGGTCAGGC 62.864 72.222 0.00 0.00 46.37 4.85
37 38 2.484287 AAACAGGCCCGATGGTCAGG 62.484 60.000 0.00 0.00 39.40 3.86
38 39 0.609131 AAAACAGGCCCGATGGTCAG 60.609 55.000 0.00 0.00 39.40 3.51
39 40 0.608035 GAAAACAGGCCCGATGGTCA 60.608 55.000 0.00 0.00 39.40 4.02
40 41 0.322546 AGAAAACAGGCCCGATGGTC 60.323 55.000 0.00 0.00 36.05 4.02
41 42 0.988832 TAGAAAACAGGCCCGATGGT 59.011 50.000 0.00 0.00 0.00 3.55
42 43 1.668419 CTAGAAAACAGGCCCGATGG 58.332 55.000 0.00 0.00 0.00 3.51
43 44 1.668419 CCTAGAAAACAGGCCCGATG 58.332 55.000 0.00 0.00 0.00 3.84
50 51 0.744771 GCTCGGGCCTAGAAAACAGG 60.745 60.000 9.63 0.00 36.16 4.00
51 52 2.768834 GCTCGGGCCTAGAAAACAG 58.231 57.895 9.63 0.00 0.00 3.16
68 69 3.980442 TTACATGTTCGGGCCGGGC 62.980 63.158 27.98 22.00 0.00 6.13
69 70 0.961358 TTTTACATGTTCGGGCCGGG 60.961 55.000 27.98 13.01 0.00 5.73
70 71 0.450184 CTTTTACATGTTCGGGCCGG 59.550 55.000 27.98 12.18 0.00 6.13
71 72 0.179174 GCTTTTACATGTTCGGGCCG 60.179 55.000 22.51 22.51 0.00 6.13
72 73 0.172578 GGCTTTTACATGTTCGGGCC 59.827 55.000 2.30 10.08 0.00 5.80
73 74 0.172578 GGGCTTTTACATGTTCGGGC 59.827 55.000 2.30 4.36 0.00 6.13
74 75 0.450184 CGGGCTTTTACATGTTCGGG 59.550 55.000 2.30 0.00 0.00 5.14
75 76 1.129811 GACGGGCTTTTACATGTTCGG 59.870 52.381 2.30 0.00 0.00 4.30
76 77 1.201877 CGACGGGCTTTTACATGTTCG 60.202 52.381 2.30 0.00 0.00 3.95
77 78 1.129811 CCGACGGGCTTTTACATGTTC 59.870 52.381 2.30 0.00 0.00 3.18
78 79 1.161843 CCGACGGGCTTTTACATGTT 58.838 50.000 2.30 0.00 0.00 2.71
79 80 0.675522 CCCGACGGGCTTTTACATGT 60.676 55.000 22.37 2.69 35.35 3.21
80 81 2.094904 CCCGACGGGCTTTTACATG 58.905 57.895 22.37 0.00 35.35 3.21
81 82 4.629779 CCCGACGGGCTTTTACAT 57.370 55.556 22.37 0.00 35.35 2.29
110 111 2.725203 TTTCTGAAGGTCGTGCCGGG 62.725 60.000 2.18 0.00 43.70 5.73
111 112 0.882927 TTTTCTGAAGGTCGTGCCGG 60.883 55.000 0.00 0.00 43.70 6.13
112 113 0.234884 GTTTTCTGAAGGTCGTGCCG 59.765 55.000 0.00 0.00 43.70 5.69
113 114 0.591659 GGTTTTCTGAAGGTCGTGCC 59.408 55.000 0.00 0.00 37.58 5.01
114 115 0.234884 CGGTTTTCTGAAGGTCGTGC 59.765 55.000 0.00 0.00 0.00 5.34
115 116 0.234884 GCGGTTTTCTGAAGGTCGTG 59.765 55.000 9.01 0.00 0.00 4.35
116 117 0.179067 TGCGGTTTTCTGAAGGTCGT 60.179 50.000 9.01 0.00 0.00 4.34
117 118 0.941542 TTGCGGTTTTCTGAAGGTCG 59.058 50.000 0.00 0.00 0.00 4.79
118 119 3.430333 TTTTGCGGTTTTCTGAAGGTC 57.570 42.857 0.00 0.00 0.00 3.85
119 120 3.517602 GTTTTTGCGGTTTTCTGAAGGT 58.482 40.909 0.00 0.00 0.00 3.50
120 121 2.533942 CGTTTTTGCGGTTTTCTGAAGG 59.466 45.455 0.00 0.00 0.00 3.46
121 122 3.239712 GTCGTTTTTGCGGTTTTCTGAAG 59.760 43.478 0.00 0.00 0.00 3.02
122 123 3.172824 GTCGTTTTTGCGGTTTTCTGAA 58.827 40.909 0.00 0.00 0.00 3.02
123 124 2.788030 GTCGTTTTTGCGGTTTTCTGA 58.212 42.857 0.00 0.00 0.00 3.27
124 125 1.511147 CGTCGTTTTTGCGGTTTTCTG 59.489 47.619 0.00 0.00 0.00 3.02
125 126 1.532298 CCGTCGTTTTTGCGGTTTTCT 60.532 47.619 0.00 0.00 40.53 2.52
126 127 0.841356 CCGTCGTTTTTGCGGTTTTC 59.159 50.000 0.00 0.00 40.53 2.29
127 128 0.525882 CCCGTCGTTTTTGCGGTTTT 60.526 50.000 0.00 0.00 43.56 2.43
128 129 1.064458 CCCGTCGTTTTTGCGGTTT 59.936 52.632 0.00 0.00 43.56 3.27
129 130 2.716864 CCCGTCGTTTTTGCGGTT 59.283 55.556 0.00 0.00 43.56 4.44
130 131 3.956317 GCCCGTCGTTTTTGCGGT 61.956 61.111 0.00 0.00 43.56 5.68
131 132 4.693525 GGCCCGTCGTTTTTGCGG 62.694 66.667 0.00 0.00 44.55 5.69
132 133 4.693525 GGGCCCGTCGTTTTTGCG 62.694 66.667 5.69 0.00 0.00 4.85
133 134 4.693525 CGGGCCCGTCGTTTTTGC 62.694 66.667 36.64 0.00 34.35 3.68
134 135 4.032987 CCGGGCCCGTCGTTTTTG 62.033 66.667 40.52 20.46 37.81 2.44
169 170 2.879026 GGCCTAGATTTTAAGCCCGAAG 59.121 50.000 0.00 0.00 37.66 3.79
170 171 2.927028 GGCCTAGATTTTAAGCCCGAA 58.073 47.619 0.00 0.00 37.66 4.30
171 172 2.632987 GGCCTAGATTTTAAGCCCGA 57.367 50.000 0.00 0.00 37.66 5.14
174 175 2.495084 CTCGGGCCTAGATTTTAAGCC 58.505 52.381 0.84 0.00 43.09 4.35
175 176 1.874231 GCTCGGGCCTAGATTTTAAGC 59.126 52.381 9.63 0.00 0.00 3.09
224 225 3.428282 CCGAAAAAGCCCGACCCG 61.428 66.667 0.00 0.00 0.00 5.28
225 226 3.060000 CCCGAAAAAGCCCGACCC 61.060 66.667 0.00 0.00 0.00 4.46
226 227 3.744719 GCCCGAAAAAGCCCGACC 61.745 66.667 0.00 0.00 0.00 4.79
227 228 3.744719 GGCCCGAAAAAGCCCGAC 61.745 66.667 0.00 0.00 43.76 4.79
232 233 3.744719 GACCCGGCCCGAAAAAGC 61.745 66.667 3.71 0.00 0.00 3.51
233 234 2.281900 TGACCCGGCCCGAAAAAG 60.282 61.111 3.71 0.00 0.00 2.27
234 235 2.281900 CTGACCCGGCCCGAAAAA 60.282 61.111 3.71 0.00 0.00 1.94
235 236 4.338710 CCTGACCCGGCCCGAAAA 62.339 66.667 3.71 0.00 0.00 2.29
271 272 1.635817 TAGACCTGGCCATGGGAAGC 61.636 60.000 17.65 6.61 0.00 3.86
272 273 0.471617 CTAGACCTGGCCATGGGAAG 59.528 60.000 17.65 10.50 0.00 3.46
273 274 0.253160 ACTAGACCTGGCCATGGGAA 60.253 55.000 17.65 5.43 0.00 3.97
274 275 0.691078 GACTAGACCTGGCCATGGGA 60.691 60.000 17.65 5.55 0.00 4.37
275 276 0.692419 AGACTAGACCTGGCCATGGG 60.692 60.000 20.97 16.10 0.00 4.00
276 277 1.967066 CTAGACTAGACCTGGCCATGG 59.033 57.143 5.51 13.05 0.00 3.66
277 278 1.342819 GCTAGACTAGACCTGGCCATG 59.657 57.143 5.51 6.06 32.83 3.66
278 279 1.062886 TGCTAGACTAGACCTGGCCAT 60.063 52.381 5.51 0.00 37.33 4.40
279 280 0.335019 TGCTAGACTAGACCTGGCCA 59.665 55.000 13.91 4.71 37.33 5.36
280 281 1.616374 GATGCTAGACTAGACCTGGCC 59.384 57.143 13.91 0.00 37.33 5.36
281 282 1.268352 CGATGCTAGACTAGACCTGGC 59.732 57.143 13.91 14.60 38.42 4.85
282 283 1.883275 CCGATGCTAGACTAGACCTGG 59.117 57.143 13.91 5.43 0.00 4.45
283 284 2.550606 GACCGATGCTAGACTAGACCTG 59.449 54.545 13.91 0.11 0.00 4.00
284 285 2.807472 CGACCGATGCTAGACTAGACCT 60.807 54.545 13.91 0.00 0.00 3.85
285 286 1.532007 CGACCGATGCTAGACTAGACC 59.468 57.143 13.91 0.00 0.00 3.85
286 287 2.221517 GTCGACCGATGCTAGACTAGAC 59.778 54.545 13.91 5.46 0.00 2.59
287 288 2.159000 TGTCGACCGATGCTAGACTAGA 60.159 50.000 14.12 0.00 33.40 2.43
288 289 2.210961 TGTCGACCGATGCTAGACTAG 58.789 52.381 14.12 5.03 33.40 2.57
289 290 2.320745 TGTCGACCGATGCTAGACTA 57.679 50.000 14.12 0.00 33.40 2.59
290 291 1.681538 ATGTCGACCGATGCTAGACT 58.318 50.000 14.12 0.00 33.40 3.24
291 292 2.493713 AATGTCGACCGATGCTAGAC 57.506 50.000 14.12 0.00 0.00 2.59
292 293 3.211865 ACTAATGTCGACCGATGCTAGA 58.788 45.455 14.12 0.00 0.00 2.43
293 294 3.556513 GACTAATGTCGACCGATGCTAG 58.443 50.000 14.12 7.04 33.15 3.42
294 295 3.620929 GACTAATGTCGACCGATGCTA 57.379 47.619 14.12 0.00 33.15 3.49
295 296 2.493713 GACTAATGTCGACCGATGCT 57.506 50.000 14.12 0.00 33.15 3.79
302 303 8.420689 GGAGATCCATTGAAGACTAATGTCGAC 61.421 44.444 9.11 9.11 40.96 4.20
303 304 6.461648 GGAGATCCATTGAAGACTAATGTCGA 60.462 42.308 0.00 0.00 40.96 4.20
304 305 5.694006 GGAGATCCATTGAAGACTAATGTCG 59.306 44.000 0.00 0.00 40.96 4.35
305 306 6.586344 TGGAGATCCATTGAAGACTAATGTC 58.414 40.000 0.00 0.00 42.01 3.06
306 307 6.566079 TGGAGATCCATTGAAGACTAATGT 57.434 37.500 0.00 0.00 42.01 2.71
321 322 5.817816 ACGAAAACTGAATACATGGAGATCC 59.182 40.000 0.00 0.00 0.00 3.36
322 323 6.910536 ACGAAAACTGAATACATGGAGATC 57.089 37.500 0.00 0.00 0.00 2.75
323 324 6.878923 TGAACGAAAACTGAATACATGGAGAT 59.121 34.615 0.00 0.00 0.00 2.75
324 325 6.227522 TGAACGAAAACTGAATACATGGAGA 58.772 36.000 0.00 0.00 0.00 3.71
325 326 6.480524 TGAACGAAAACTGAATACATGGAG 57.519 37.500 0.00 0.00 0.00 3.86
326 327 6.429692 ACATGAACGAAAACTGAATACATGGA 59.570 34.615 0.00 0.00 37.49 3.41
327 328 6.611381 ACATGAACGAAAACTGAATACATGG 58.389 36.000 0.00 0.00 37.49 3.66
328 329 7.521529 AGACATGAACGAAAACTGAATACATG 58.478 34.615 0.00 0.00 38.59 3.21
329 330 7.604164 AGAGACATGAACGAAAACTGAATACAT 59.396 33.333 0.00 0.00 0.00 2.29
330 331 6.929049 AGAGACATGAACGAAAACTGAATACA 59.071 34.615 0.00 0.00 0.00 2.29
331 332 7.352719 AGAGACATGAACGAAAACTGAATAC 57.647 36.000 0.00 0.00 0.00 1.89
332 333 8.085909 TGTAGAGACATGAACGAAAACTGAATA 58.914 33.333 0.00 0.00 0.00 1.75
333 334 6.929049 TGTAGAGACATGAACGAAAACTGAAT 59.071 34.615 0.00 0.00 0.00 2.57
334 335 6.277605 TGTAGAGACATGAACGAAAACTGAA 58.722 36.000 0.00 0.00 0.00 3.02
335 336 5.838529 TGTAGAGACATGAACGAAAACTGA 58.161 37.500 0.00 0.00 0.00 3.41
336 337 5.119279 CCTGTAGAGACATGAACGAAAACTG 59.881 44.000 0.00 0.00 34.24 3.16
337 338 5.221461 ACCTGTAGAGACATGAACGAAAACT 60.221 40.000 0.00 0.00 34.24 2.66
338 339 4.989168 ACCTGTAGAGACATGAACGAAAAC 59.011 41.667 0.00 0.00 34.24 2.43
339 340 5.209818 ACCTGTAGAGACATGAACGAAAA 57.790 39.130 0.00 0.00 34.24 2.29
340 341 4.866508 ACCTGTAGAGACATGAACGAAA 57.133 40.909 0.00 0.00 34.24 3.46
341 342 4.556233 CAACCTGTAGAGACATGAACGAA 58.444 43.478 0.00 0.00 34.24 3.85
342 343 3.056821 CCAACCTGTAGAGACATGAACGA 60.057 47.826 0.00 0.00 34.24 3.85
343 344 3.056821 TCCAACCTGTAGAGACATGAACG 60.057 47.826 0.00 0.00 34.24 3.95
344 345 4.246458 GTCCAACCTGTAGAGACATGAAC 58.754 47.826 0.00 0.00 34.24 3.18
345 346 3.260884 GGTCCAACCTGTAGAGACATGAA 59.739 47.826 0.00 0.00 34.73 2.57
346 347 2.832129 GGTCCAACCTGTAGAGACATGA 59.168 50.000 0.00 0.00 34.73 3.07
347 348 2.093447 GGGTCCAACCTGTAGAGACATG 60.093 54.545 0.00 0.00 38.64 3.21
348 349 2.188817 GGGTCCAACCTGTAGAGACAT 58.811 52.381 0.00 0.00 38.64 3.06
349 350 1.149288 AGGGTCCAACCTGTAGAGACA 59.851 52.381 0.00 0.00 40.04 3.41
350 351 1.939980 AGGGTCCAACCTGTAGAGAC 58.060 55.000 0.00 0.00 40.04 3.36
351 352 2.537143 GAAGGGTCCAACCTGTAGAGA 58.463 52.381 0.00 0.00 40.87 3.10
352 353 1.555533 GGAAGGGTCCAACCTGTAGAG 59.444 57.143 0.00 0.00 44.26 2.43
353 354 1.652947 GGAAGGGTCCAACCTGTAGA 58.347 55.000 0.00 0.00 44.26 2.59
354 355 0.249398 CGGAAGGGTCCAACCTGTAG 59.751 60.000 0.00 0.00 45.26 2.74
355 356 0.178926 TCGGAAGGGTCCAACCTGTA 60.179 55.000 0.00 0.00 45.26 2.74
356 357 0.840722 ATCGGAAGGGTCCAACCTGT 60.841 55.000 0.00 0.00 45.26 4.00
357 358 0.107654 GATCGGAAGGGTCCAACCTG 60.108 60.000 0.00 0.00 45.26 4.00
358 359 0.252742 AGATCGGAAGGGTCCAACCT 60.253 55.000 0.00 0.00 45.26 3.50
359 360 1.138464 GTAGATCGGAAGGGTCCAACC 59.862 57.143 0.00 0.00 45.26 3.77
360 361 1.202382 CGTAGATCGGAAGGGTCCAAC 60.202 57.143 0.00 0.00 45.26 3.77
361 362 1.108776 CGTAGATCGGAAGGGTCCAA 58.891 55.000 0.00 0.00 45.26 3.53
362 363 1.389609 GCGTAGATCGGAAGGGTCCA 61.390 60.000 0.00 0.00 45.26 4.02
363 364 1.363080 GCGTAGATCGGAAGGGTCC 59.637 63.158 0.00 0.00 41.01 4.46
364 365 1.108132 AGGCGTAGATCGGAAGGGTC 61.108 60.000 0.00 0.00 40.26 4.46
365 366 0.184451 TAGGCGTAGATCGGAAGGGT 59.816 55.000 0.00 0.00 40.26 4.34
366 367 1.473278 GATAGGCGTAGATCGGAAGGG 59.527 57.143 0.00 0.00 40.26 3.95
367 368 2.438411 AGATAGGCGTAGATCGGAAGG 58.562 52.381 0.00 0.00 40.26 3.46
368 369 3.502595 TGAAGATAGGCGTAGATCGGAAG 59.497 47.826 0.00 0.00 40.26 3.46
369 370 3.483421 TGAAGATAGGCGTAGATCGGAA 58.517 45.455 0.00 0.00 40.26 4.30
370 371 3.136009 TGAAGATAGGCGTAGATCGGA 57.864 47.619 0.00 0.00 40.26 4.55
371 372 3.486043 CGATGAAGATAGGCGTAGATCGG 60.486 52.174 0.00 0.00 40.26 4.18
372 373 3.371285 TCGATGAAGATAGGCGTAGATCG 59.629 47.826 0.00 0.00 43.12 3.69
373 374 4.654015 GTCGATGAAGATAGGCGTAGATC 58.346 47.826 0.00 0.00 0.00 2.75
374 375 3.125487 CGTCGATGAAGATAGGCGTAGAT 59.875 47.826 0.00 0.00 28.78 1.98
375 376 2.479275 CGTCGATGAAGATAGGCGTAGA 59.521 50.000 0.00 0.00 28.78 2.59
376 377 2.479275 TCGTCGATGAAGATAGGCGTAG 59.521 50.000 4.45 0.00 34.33 3.51
377 378 2.222678 GTCGTCGATGAAGATAGGCGTA 59.777 50.000 9.35 0.00 34.33 4.42
378 379 1.002684 GTCGTCGATGAAGATAGGCGT 60.003 52.381 9.35 0.00 34.33 5.68
379 380 1.676057 GTCGTCGATGAAGATAGGCG 58.324 55.000 9.35 0.00 34.02 5.52
380 381 1.663445 CCGTCGTCGATGAAGATAGGC 60.663 57.143 20.29 1.01 39.71 3.93
381 382 1.602851 ACCGTCGTCGATGAAGATAGG 59.397 52.381 20.29 14.84 39.71 2.57
382 383 3.036633 CAACCGTCGTCGATGAAGATAG 58.963 50.000 20.29 7.74 39.71 2.08
383 384 2.793585 GCAACCGTCGTCGATGAAGATA 60.794 50.000 20.29 0.00 39.71 1.98
384 385 1.909376 CAACCGTCGTCGATGAAGAT 58.091 50.000 20.29 1.44 39.71 2.40
385 386 0.731514 GCAACCGTCGTCGATGAAGA 60.732 55.000 20.29 0.77 39.71 2.87
386 387 0.732880 AGCAACCGTCGTCGATGAAG 60.733 55.000 16.06 11.39 39.71 3.02
387 388 1.006825 CAGCAACCGTCGTCGATGAA 61.007 55.000 16.06 0.00 39.71 2.57
388 389 1.443702 CAGCAACCGTCGTCGATGA 60.444 57.895 16.06 2.39 39.71 2.92
389 390 1.282248 AACAGCAACCGTCGTCGATG 61.282 55.000 7.51 7.51 39.71 3.84
390 391 1.006571 AACAGCAACCGTCGTCGAT 60.007 52.632 2.98 0.00 39.71 3.59
391 392 1.659335 GAACAGCAACCGTCGTCGA 60.659 57.895 2.98 0.00 39.71 4.20
392 393 1.660575 AGAACAGCAACCGTCGTCG 60.661 57.895 0.00 0.00 0.00 5.12
393 394 1.557443 CCAGAACAGCAACCGTCGTC 61.557 60.000 0.00 0.00 0.00 4.20
394 395 1.594293 CCAGAACAGCAACCGTCGT 60.594 57.895 0.00 0.00 0.00 4.34
395 396 1.594293 ACCAGAACAGCAACCGTCG 60.594 57.895 0.00 0.00 0.00 5.12
396 397 0.814010 ACACCAGAACAGCAACCGTC 60.814 55.000 0.00 0.00 0.00 4.79
397 398 1.095228 CACACCAGAACAGCAACCGT 61.095 55.000 0.00 0.00 0.00 4.83
398 399 1.648720 CACACCAGAACAGCAACCG 59.351 57.895 0.00 0.00 0.00 4.44
399 400 1.103398 AGCACACCAGAACAGCAACC 61.103 55.000 0.00 0.00 0.00 3.77
400 401 0.029834 CAGCACACCAGAACAGCAAC 59.970 55.000 0.00 0.00 0.00 4.17
401 402 1.102809 CCAGCACACCAGAACAGCAA 61.103 55.000 0.00 0.00 0.00 3.91
402 403 1.526686 CCAGCACACCAGAACAGCA 60.527 57.895 0.00 0.00 0.00 4.41
403 404 1.227943 TCCAGCACACCAGAACAGC 60.228 57.895 0.00 0.00 0.00 4.40
423 424 1.734163 GTCATGTTAAGGACCCACGG 58.266 55.000 0.00 0.00 30.77 4.94
424 425 1.067425 TCGTCATGTTAAGGACCCACG 60.067 52.381 0.00 0.00 33.49 4.94
426 427 2.253610 AGTCGTCATGTTAAGGACCCA 58.746 47.619 0.00 0.00 33.49 4.51
428 429 4.753107 TGAAAAGTCGTCATGTTAAGGACC 59.247 41.667 0.00 0.00 33.49 4.46
430 431 6.018262 CAGTTGAAAAGTCGTCATGTTAAGGA 60.018 38.462 0.00 0.00 0.00 3.36
431 432 6.136071 CAGTTGAAAAGTCGTCATGTTAAGG 58.864 40.000 0.00 0.00 0.00 2.69
432 433 6.715464 ACAGTTGAAAAGTCGTCATGTTAAG 58.285 36.000 0.00 0.00 0.00 1.85
439 442 5.258456 AGTAGACAGTTGAAAAGTCGTCA 57.742 39.130 0.00 0.00 37.36 4.35
449 452 7.913297 GCAAAAATTGTTGTAGTAGACAGTTGA 59.087 33.333 10.07 0.00 39.88 3.18
450 453 7.167468 GGCAAAAATTGTTGTAGTAGACAGTTG 59.833 37.037 10.07 0.00 39.88 3.16
451 454 7.200455 GGCAAAAATTGTTGTAGTAGACAGTT 58.800 34.615 10.07 0.00 39.88 3.16
455 458 5.151389 CGGGCAAAAATTGTTGTAGTAGAC 58.849 41.667 10.07 0.00 0.00 2.59
461 464 2.288518 GGAGCGGGCAAAAATTGTTGTA 60.289 45.455 10.07 0.00 0.00 2.41
462 465 1.540146 GGAGCGGGCAAAAATTGTTGT 60.540 47.619 10.07 0.00 0.00 3.32
484 488 2.508751 GGCGCTACCCCTCCCTAAG 61.509 68.421 7.64 0.00 0.00 2.18
486 490 4.908487 CGGCGCTACCCCTCCCTA 62.908 72.222 7.64 0.00 33.26 3.53
504 508 4.210304 GAGCCGAATGTGCGTCGC 62.210 66.667 11.10 11.10 37.18 5.19
507 511 4.742201 AGCGAGCCGAATGTGCGT 62.742 61.111 0.00 0.00 0.00 5.24
508 512 3.918220 GAGCGAGCCGAATGTGCG 61.918 66.667 0.00 0.00 0.00 5.34
511 515 2.185350 CTGGAGCGAGCCGAATGT 59.815 61.111 0.00 0.00 0.00 2.71
513 517 2.185350 CACTGGAGCGAGCCGAAT 59.815 61.111 0.00 0.00 0.00 3.34
517 521 2.507110 TACAAGCACTGGAGCGAGCC 62.507 60.000 0.00 0.00 40.15 4.70
521 525 1.073216 CGACTACAAGCACTGGAGCG 61.073 60.000 0.00 0.53 40.05 5.03
525 529 1.344942 GCGACGACTACAAGCACTGG 61.345 60.000 0.00 0.00 0.00 4.00
526 530 1.344942 GGCGACGACTACAAGCACTG 61.345 60.000 0.00 0.00 0.00 3.66
534 538 2.181021 CCACCTGGCGACGACTAC 59.819 66.667 0.65 0.00 0.00 2.73
545 549 3.981071 TCCAGATAAGTTGACCACCTG 57.019 47.619 0.00 0.00 0.00 4.00
548 552 5.978814 AGTACATCCAGATAAGTTGACCAC 58.021 41.667 0.00 0.00 0.00 4.16
560 564 9.878667 TCAAAACGAAATATTAGTACATCCAGA 57.121 29.630 0.00 0.00 0.00 3.86
563 567 9.916397 CACTCAAAACGAAATATTAGTACATCC 57.084 33.333 0.00 0.00 0.00 3.51
570 574 8.629986 CAAGCAACACTCAAAACGAAATATTAG 58.370 33.333 0.00 0.00 0.00 1.73
571 575 8.132362 ACAAGCAACACTCAAAACGAAATATTA 58.868 29.630 0.00 0.00 0.00 0.98
572 576 6.978080 ACAAGCAACACTCAAAACGAAATATT 59.022 30.769 0.00 0.00 0.00 1.28
573 577 6.503524 ACAAGCAACACTCAAAACGAAATAT 58.496 32.000 0.00 0.00 0.00 1.28
574 578 5.885881 ACAAGCAACACTCAAAACGAAATA 58.114 33.333 0.00 0.00 0.00 1.40
579 583 3.359654 GGTACAAGCAACACTCAAAACG 58.640 45.455 0.00 0.00 0.00 3.60
580 584 3.359654 CGGTACAAGCAACACTCAAAAC 58.640 45.455 0.00 0.00 0.00 2.43
583 587 0.941542 GCGGTACAAGCAACACTCAA 59.058 50.000 7.56 0.00 34.19 3.02
585 589 0.882927 TGGCGGTACAAGCAACACTC 60.883 55.000 13.38 0.00 36.08 3.51
586 590 0.250727 ATGGCGGTACAAGCAACACT 60.251 50.000 13.38 0.00 36.08 3.55
592 596 0.657840 GATGACATGGCGGTACAAGC 59.342 55.000 0.00 4.22 0.00 4.01
596 600 2.138320 CATCAGATGACATGGCGGTAC 58.862 52.381 4.11 0.00 0.00 3.34
597 601 2.038659 TCATCAGATGACATGGCGGTA 58.961 47.619 9.21 0.00 33.59 4.02
600 604 4.563061 TCTATTCATCAGATGACATGGCG 58.437 43.478 13.01 0.00 39.39 5.69
650 658 9.855021 TGATTACCTTTTAAGCTCATTTTTAGC 57.145 29.630 0.00 0.00 40.40 3.09
660 668 9.088987 TCTTTTCCATTGATTACCTTTTAAGCT 57.911 29.630 0.00 0.00 0.00 3.74
685 693 7.922811 ACATGTTTTCAATCTCAAAAGACCTTC 59.077 33.333 0.00 0.00 33.32 3.46
689 697 8.862550 AGAACATGTTTTCAATCTCAAAAGAC 57.137 30.769 13.36 0.00 33.32 3.01
691 699 8.909671 GCTAGAACATGTTTTCAATCTCAAAAG 58.090 33.333 13.36 0.00 0.00 2.27
692 700 8.412456 TGCTAGAACATGTTTTCAATCTCAAAA 58.588 29.630 13.36 0.00 0.00 2.44
696 704 6.902341 TGTGCTAGAACATGTTTTCAATCTC 58.098 36.000 13.36 0.00 0.00 2.75
697 705 6.882610 TGTGCTAGAACATGTTTTCAATCT 57.117 33.333 13.36 6.63 0.00 2.40
699 707 5.922544 GCTTGTGCTAGAACATGTTTTCAAT 59.077 36.000 13.36 0.00 36.03 2.57
701 709 4.858935 GCTTGTGCTAGAACATGTTTTCA 58.141 39.130 13.36 5.81 36.03 2.69
917 938 1.068125 GCGGGTTTAAGATTTTGCGGT 60.068 47.619 0.00 0.00 0.00 5.68
973 994 2.268920 GAACGCCATGGCTGAGGA 59.731 61.111 33.07 0.00 39.32 3.71
975 996 2.401766 GGTGAACGCCATGGCTGAG 61.402 63.158 33.07 20.69 39.32 3.35
976 997 2.359850 GGTGAACGCCATGGCTGA 60.360 61.111 33.07 8.23 39.32 4.26
996 1017 2.699073 CATGAGGTCCTTCATGCGG 58.301 57.895 14.52 0.00 45.49 5.69
1077 1098 0.172578 TGTTGATGGCGACGTAGAGG 59.827 55.000 0.00 0.00 0.00 3.69
1078 1099 1.654105 GTTGTTGATGGCGACGTAGAG 59.346 52.381 0.00 0.00 0.00 2.43
1080 1101 1.424403 TGTTGTTGATGGCGACGTAG 58.576 50.000 0.00 0.00 0.00 3.51
1508 1535 3.942829 TCCTCTCACAGCTAAACCAATG 58.057 45.455 0.00 0.00 0.00 2.82
1612 1639 8.157476 AGTACAAATGAAGAACAGTACTCCATT 58.843 33.333 0.00 0.00 34.90 3.16
1614 1641 6.929049 CAGTACAAATGAAGAACAGTACTCCA 59.071 38.462 0.00 0.00 36.53 3.86
1615 1642 6.128526 GCAGTACAAATGAAGAACAGTACTCC 60.129 42.308 0.00 0.00 36.53 3.85
1616 1643 6.647067 AGCAGTACAAATGAAGAACAGTACTC 59.353 38.462 0.00 0.00 36.53 2.59
1644 1672 3.192212 AGCCGTACTTGACAACTAGGTAC 59.808 47.826 0.00 5.72 0.00 3.34
1657 1685 4.877251 TGTAACTTGTTCAAAGCCGTACTT 59.123 37.500 0.00 0.00 41.70 2.24
1724 1753 3.567164 ACTGAATCCAGAACACTGCAAAG 59.433 43.478 0.00 0.00 43.02 2.77
1725 1754 3.554934 ACTGAATCCAGAACACTGCAAA 58.445 40.909 0.00 0.00 43.02 3.68
1726 1755 3.141398 GACTGAATCCAGAACACTGCAA 58.859 45.455 0.00 0.00 43.02 4.08
1727 1756 2.369860 AGACTGAATCCAGAACACTGCA 59.630 45.455 0.00 0.00 43.02 4.41
1747 1776 4.307432 ACTACATTGTCGAGGTTGTTCAG 58.693 43.478 0.00 0.00 0.00 3.02
1748 1777 4.330944 ACTACATTGTCGAGGTTGTTCA 57.669 40.909 0.00 0.00 0.00 3.18
1749 1778 6.812160 AGATAACTACATTGTCGAGGTTGTTC 59.188 38.462 7.78 0.00 38.53 3.18
1779 1808 9.765795 GAGTATTTTAGCCTGTACACATAAGAT 57.234 33.333 0.00 0.00 0.00 2.40
1784 1813 6.947464 ACAGAGTATTTTAGCCTGTACACAT 58.053 36.000 0.00 0.00 36.44 3.21
1840 1869 4.729227 TTCGGATGCATTGACACTAGTA 57.271 40.909 0.00 0.00 0.00 1.82
1875 1913 3.640498 TCATTCCAAATGGCAGTTGTGAA 59.360 39.130 24.03 23.72 34.44 3.18
1879 1917 3.006110 ACAGTCATTCCAAATGGCAGTTG 59.994 43.478 19.96 19.96 34.44 3.16
1918 1971 8.840833 TGCACTAGATGTTTATACACTCAAAA 57.159 30.769 0.00 0.00 37.03 2.44
1977 2030 5.432885 TCAAACAAAGGCTACAAACTAGC 57.567 39.130 0.00 0.00 39.70 3.42
1978 2031 6.039382 AGGTTCAAACAAAGGCTACAAACTAG 59.961 38.462 0.00 0.00 0.00 2.57
1980 2033 4.709886 AGGTTCAAACAAAGGCTACAAACT 59.290 37.500 0.00 0.00 0.00 2.66
1981 2034 5.006153 AGGTTCAAACAAAGGCTACAAAC 57.994 39.130 0.00 0.00 0.00 2.93
1988 2041 4.803613 CAGTAACAAGGTTCAAACAAAGGC 59.196 41.667 0.00 0.00 0.00 4.35
2093 2148 9.793252 GTGCATTTTACTTGAAGACATTATGAT 57.207 29.630 0.00 0.00 0.00 2.45
2094 2149 8.243426 GGTGCATTTTACTTGAAGACATTATGA 58.757 33.333 0.00 0.00 0.00 2.15
2095 2150 8.246180 AGGTGCATTTTACTTGAAGACATTATG 58.754 33.333 0.00 0.00 0.00 1.90
2096 2151 8.353423 AGGTGCATTTTACTTGAAGACATTAT 57.647 30.769 0.00 0.00 0.00 1.28
2097 2152 7.759489 AGGTGCATTTTACTTGAAGACATTA 57.241 32.000 0.00 0.00 0.00 1.90
2098 2153 6.655078 AGGTGCATTTTACTTGAAGACATT 57.345 33.333 0.00 0.00 0.00 2.71
2099 2154 6.655078 AAGGTGCATTTTACTTGAAGACAT 57.345 33.333 0.00 0.00 0.00 3.06
2100 2155 6.463995 AAAGGTGCATTTTACTTGAAGACA 57.536 33.333 0.00 0.00 0.00 3.41
2101 2156 7.770801 AAAAAGGTGCATTTTACTTGAAGAC 57.229 32.000 0.00 0.00 32.20 3.01
2143 2198 7.451566 AGTTTCAGTACTAAAATTTGGGAGCAT 59.548 33.333 0.00 0.00 0.00 3.79
2144 2199 6.775629 AGTTTCAGTACTAAAATTTGGGAGCA 59.224 34.615 0.00 0.00 0.00 4.26
2159 2214 2.544267 GTGTGTGCTCCAGTTTCAGTAC 59.456 50.000 0.00 0.00 0.00 2.73
2178 2233 3.004002 TGCATTTCAGCTGAGTTTCTGTG 59.996 43.478 17.43 9.89 34.99 3.66
2190 2245 3.444916 CCAGACATGATTGCATTTCAGC 58.555 45.455 0.00 0.00 34.41 4.26
2192 2247 3.697542 CTCCCAGACATGATTGCATTTCA 59.302 43.478 0.00 2.68 34.41 2.69
2199 2254 4.434545 AATCCTCTCCCAGACATGATTG 57.565 45.455 0.00 0.00 0.00 2.67
2249 2304 0.537653 TTGGCAATGGGTCGACGATA 59.462 50.000 9.92 0.00 0.00 2.92
2261 2316 5.733620 ACAAGTCAGAATCAATTGGCAAT 57.266 34.783 6.96 6.96 0.00 3.56
2295 2350 2.352127 GCCTTTGCACAATTCACCTCTC 60.352 50.000 0.00 0.00 37.47 3.20
2301 2356 4.099266 AGTTACAAGCCTTTGCACAATTCA 59.901 37.500 0.00 0.00 41.13 2.57
2329 2384 9.268282 AGGGAGTAGTATAATCTGACTTTTTCA 57.732 33.333 0.00 0.00 35.69 2.69
2330 2385 9.752961 GAGGGAGTAGTATAATCTGACTTTTTC 57.247 37.037 0.00 0.00 35.69 2.29
2332 2387 7.014422 CGGAGGGAGTAGTATAATCTGACTTTT 59.986 40.741 0.00 0.00 35.69 2.27
2333 2388 6.490721 CGGAGGGAGTAGTATAATCTGACTTT 59.509 42.308 0.00 0.00 35.69 2.66
2334 2389 6.005198 CGGAGGGAGTAGTATAATCTGACTT 58.995 44.000 0.00 0.00 35.69 3.01
2337 2392 5.579753 ACGGAGGGAGTAGTATAATCTGA 57.420 43.478 0.00 0.00 35.69 3.27
2338 2393 5.183522 GGAACGGAGGGAGTAGTATAATCTG 59.816 48.000 0.00 0.00 35.69 2.90
2341 2396 5.336491 AGGAACGGAGGGAGTAGTATAAT 57.664 43.478 0.00 0.00 0.00 1.28
2343 2398 5.912149 TTAGGAACGGAGGGAGTAGTATA 57.088 43.478 0.00 0.00 0.00 1.47
2344 2399 4.803329 TTAGGAACGGAGGGAGTAGTAT 57.197 45.455 0.00 0.00 0.00 2.12
2345 2400 4.591321 TTTAGGAACGGAGGGAGTAGTA 57.409 45.455 0.00 0.00 0.00 1.82
2347 2402 6.667558 AATATTTAGGAACGGAGGGAGTAG 57.332 41.667 0.00 0.00 0.00 2.57
2349 2404 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2350 2405 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2351 2406 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2352 2407 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2353 2408 7.120726 ACAAAGACAAATATTTAGGAACGGAGG 59.879 37.037 0.00 0.00 0.00 4.30
2354 2409 8.040716 ACAAAGACAAATATTTAGGAACGGAG 57.959 34.615 0.00 0.00 0.00 4.63
2356 2411 9.158233 TCTACAAAGACAAATATTTAGGAACGG 57.842 33.333 0.00 0.00 0.00 4.44
2375 2533 9.778741 ATAGTCACTTGTTGAAATCTCTACAAA 57.221 29.630 0.00 0.00 43.56 2.83
2380 2538 9.737427 CGTATATAGTCACTTGTTGAAATCTCT 57.263 33.333 0.00 0.00 35.39 3.10
2381 2539 8.969267 CCGTATATAGTCACTTGTTGAAATCTC 58.031 37.037 0.00 0.00 35.39 2.75
2383 2541 8.867112 TCCGTATATAGTCACTTGTTGAAATC 57.133 34.615 0.00 0.00 35.39 2.17
2384 2542 7.438459 GCTCCGTATATAGTCACTTGTTGAAAT 59.562 37.037 0.00 0.00 35.39 2.17
2385 2543 6.755141 GCTCCGTATATAGTCACTTGTTGAAA 59.245 38.462 0.00 0.00 35.39 2.69
2386 2544 6.127563 TGCTCCGTATATAGTCACTTGTTGAA 60.128 38.462 0.00 0.00 35.39 2.69
2387 2545 5.358725 TGCTCCGTATATAGTCACTTGTTGA 59.641 40.000 0.00 0.00 0.00 3.18
2388 2546 5.588240 TGCTCCGTATATAGTCACTTGTTG 58.412 41.667 0.00 0.00 0.00 3.33
2390 2548 5.847111 TTGCTCCGTATATAGTCACTTGT 57.153 39.130 0.00 0.00 0.00 3.16
2391 2549 7.438160 TCATTTTGCTCCGTATATAGTCACTTG 59.562 37.037 0.00 0.00 0.00 3.16
2393 2551 7.050970 TCATTTTGCTCCGTATATAGTCACT 57.949 36.000 0.00 0.00 0.00 3.41
2394 2552 6.924060 ACTCATTTTGCTCCGTATATAGTCAC 59.076 38.462 0.00 0.00 0.00 3.67
2396 2554 7.145985 TCACTCATTTTGCTCCGTATATAGTC 58.854 38.462 0.00 0.00 0.00 2.59
2398 2556 7.946655 TTCACTCATTTTGCTCCGTATATAG 57.053 36.000 0.00 0.00 0.00 1.31
2401 2559 6.582636 AGATTCACTCATTTTGCTCCGTATA 58.417 36.000 0.00 0.00 0.00 1.47
2402 2560 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2403 2561 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2405 2563 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2406 2564 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2407 2565 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2438 2596 9.901172 TGACTACATACGGATGTATATAGACAT 57.099 33.333 20.64 12.70 45.42 3.06
2440 2598 9.381033 AGTGACTACATACGGATGTATATAGAC 57.619 37.037 20.64 11.59 45.42 2.59
2442 2600 9.989869 CAAGTGACTACATACGGATGTATATAG 57.010 37.037 20.64 13.28 45.42 1.31
2443 2601 9.511272 ACAAGTGACTACATACGGATGTATATA 57.489 33.333 20.64 7.33 45.42 0.86
2444 2602 8.405418 ACAAGTGACTACATACGGATGTATAT 57.595 34.615 20.64 12.15 45.42 0.86
2447 2605 6.151480 TCAACAAGTGACTACATACGGATGTA 59.849 38.462 19.32 19.32 44.77 2.29
2449 2607 5.407502 TCAACAAGTGACTACATACGGATG 58.592 41.667 5.94 5.94 39.16 3.51
2450 2608 5.654603 TCAACAAGTGACTACATACGGAT 57.345 39.130 0.00 0.00 0.00 4.18
2451 2609 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
2452 2610 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
2453 2611 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
2454 2612 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
2456 2614 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2457 2615 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
2458 2616 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2460 2618 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2461 2619 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
2462 2620 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
2463 2621 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
2464 2622 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2477 2635 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2484 2663 6.156429 ACTCCTCCGTTCCTAAATATTTGTCT 59.844 38.462 11.05 0.00 0.00 3.41
2485 2664 6.346896 ACTCCTCCGTTCCTAAATATTTGTC 58.653 40.000 11.05 0.00 0.00 3.18
2486 2665 6.309389 ACTCCTCCGTTCCTAAATATTTGT 57.691 37.500 11.05 0.00 0.00 2.83
2487 2666 7.498443 ACTACTCCTCCGTTCCTAAATATTTG 58.502 38.462 11.05 1.40 0.00 2.32
2488 2667 7.672122 ACTACTCCTCCGTTCCTAAATATTT 57.328 36.000 5.89 5.89 0.00 1.40
2492 2671 6.370186 AAAACTACTCCTCCGTTCCTAAAT 57.630 37.500 0.00 0.00 0.00 1.40
2494 2673 5.813513 AAAAACTACTCCTCCGTTCCTAA 57.186 39.130 0.00 0.00 0.00 2.69
2496 2675 5.813513 TTAAAAACTACTCCTCCGTTCCT 57.186 39.130 0.00 0.00 0.00 3.36
2501 2680 9.032420 GTCTATTCATTAAAAACTACTCCTCCG 57.968 37.037 0.00 0.00 0.00 4.63
2502 2681 9.886132 TGTCTATTCATTAAAAACTACTCCTCC 57.114 33.333 0.00 0.00 0.00 4.30
2520 2699 9.884465 GTGCATGACCTTATAATTTGTCTATTC 57.116 33.333 0.00 0.00 0.00 1.75
2521 2700 9.407380 TGTGCATGACCTTATAATTTGTCTATT 57.593 29.630 0.00 0.00 0.00 1.73
2524 2703 7.682741 GCATGTGCATGACCTTATAATTTGTCT 60.683 37.037 15.53 0.00 41.20 3.41
2525 2704 6.418819 GCATGTGCATGACCTTATAATTTGTC 59.581 38.462 15.53 0.00 41.20 3.18
2526 2705 6.275335 GCATGTGCATGACCTTATAATTTGT 58.725 36.000 15.53 0.00 41.20 2.83
2527 2706 6.758593 GCATGTGCATGACCTTATAATTTG 57.241 37.500 15.53 0.00 41.20 2.32
2543 2722 9.467258 AATGTTATGTAAAGAATATGCATGTGC 57.533 29.630 10.16 0.03 42.50 4.57
2557 2736 9.913310 TCCACATGGAATAGAATGTTATGTAAA 57.087 29.630 0.00 0.00 42.18 2.01
2576 2755 3.538591 ACAGCATATGACAGTCCACATG 58.461 45.455 6.97 0.00 0.00 3.21
2578 2757 3.701205 AACAGCATATGACAGTCCACA 57.299 42.857 6.97 0.00 0.00 4.17
2579 2758 4.332819 GGTAAACAGCATATGACAGTCCAC 59.667 45.833 6.97 3.22 0.00 4.02
2581 2760 4.332819 GTGGTAAACAGCATATGACAGTCC 59.667 45.833 6.97 0.41 0.00 3.85
2582 2761 4.935205 TGTGGTAAACAGCATATGACAGTC 59.065 41.667 6.97 0.00 33.78 3.51
2583 2762 4.905429 TGTGGTAAACAGCATATGACAGT 58.095 39.130 6.97 0.00 33.78 3.55
2595 2774 3.085533 AGCAACAACACTGTGGTAAACA 58.914 40.909 13.09 0.00 35.37 2.83
2596 2775 3.775661 AGCAACAACACTGTGGTAAAC 57.224 42.857 13.09 0.00 35.37 2.01
2597 2776 3.674682 GCAAGCAACAACACTGTGGTAAA 60.675 43.478 13.09 0.00 35.37 2.01
2599 2778 1.403679 GCAAGCAACAACACTGTGGTA 59.596 47.619 13.09 0.00 35.37 3.25
2601 2780 0.457035 AGCAAGCAACAACACTGTGG 59.543 50.000 13.09 0.00 35.37 4.17
2602 2781 3.419264 TTAGCAAGCAACAACACTGTG 57.581 42.857 6.19 6.19 35.37 3.66
2604 2783 5.518812 TGTATTTAGCAAGCAACAACACTG 58.481 37.500 0.00 0.00 0.00 3.66
2605 2784 5.299279 ACTGTATTTAGCAAGCAACAACACT 59.701 36.000 0.00 0.00 0.00 3.55
2606 2785 5.519722 ACTGTATTTAGCAAGCAACAACAC 58.480 37.500 0.00 0.00 0.00 3.32
2607 2786 5.766150 ACTGTATTTAGCAAGCAACAACA 57.234 34.783 0.00 0.00 0.00 3.33
2608 2787 6.148811 TCCTACTGTATTTAGCAAGCAACAAC 59.851 38.462 0.00 0.00 0.00 3.32
2610 2789 5.800296 TCCTACTGTATTTAGCAAGCAACA 58.200 37.500 0.00 0.00 0.00 3.33
2611 2790 6.927294 ATCCTACTGTATTTAGCAAGCAAC 57.073 37.500 0.00 0.00 0.00 4.17
2612 2791 7.792032 AGTATCCTACTGTATTTAGCAAGCAA 58.208 34.615 0.00 0.00 37.69 3.91
2627 2806 8.312669 AGCTACAAATTTCTCAGTATCCTACT 57.687 34.615 0.00 0.00 40.28 2.57
2628 2807 8.950208 AAGCTACAAATTTCTCAGTATCCTAC 57.050 34.615 0.00 0.00 0.00 3.18
2635 2814 7.229506 AGCAAGTAAAGCTACAAATTTCTCAGT 59.770 33.333 0.00 0.00 41.32 3.41
2636 2815 7.536622 CAGCAAGTAAAGCTACAAATTTCTCAG 59.463 37.037 0.00 0.00 41.14 3.35
2637 2816 7.013274 ACAGCAAGTAAAGCTACAAATTTCTCA 59.987 33.333 0.00 0.00 41.14 3.27
2638 2817 7.363431 ACAGCAAGTAAAGCTACAAATTTCTC 58.637 34.615 0.00 0.00 41.14 2.87
2639 2818 7.013274 TGACAGCAAGTAAAGCTACAAATTTCT 59.987 33.333 0.00 0.00 41.14 2.52
2640 2819 7.138736 TGACAGCAAGTAAAGCTACAAATTTC 58.861 34.615 0.00 0.00 41.14 2.17
2641 2820 7.038154 TGACAGCAAGTAAAGCTACAAATTT 57.962 32.000 0.00 0.00 41.14 1.82
2642 2821 6.633500 TGACAGCAAGTAAAGCTACAAATT 57.367 33.333 0.00 0.00 41.14 1.82
2643 2822 6.430925 TGATGACAGCAAGTAAAGCTACAAAT 59.569 34.615 0.00 0.00 41.14 2.32
2644 2823 5.762711 TGATGACAGCAAGTAAAGCTACAAA 59.237 36.000 0.00 0.00 41.14 2.83
2649 2828 8.737168 TTAATATGATGACAGCAAGTAAAGCT 57.263 30.769 0.00 0.00 44.62 3.74
2650 2829 9.956720 AATTAATATGATGACAGCAAGTAAAGC 57.043 29.630 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.