>input_sequence_71607
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------------------------------------------------------------ATGAAGGACCTCATGAGGAA
GTACGGCAAGGTGGCCCTCGGTGTCCACGTCTCCGTCTCCGTCGCCTCCGTCTCCGGCCTCTACGTCGCCATCAACAACA
ACGTCGACGTCGACGCCATCTTCCGCAAGATCGGCATCAGCGCCCCCGGCACCGCCGCAGGCGACGCGGCCCTG------
CCCGCCCCCTCTCCCGGCGCCGGCGACGGGGCCCTCCCCCTCCCCGCCCCCGCCGTCGTCGTCGGCCAGGAGGCGCCGCG
GAACCGGACCGGGGAGCTCGCGGCGTCCAGCGGCGGCGCGCTCGCGCTCGCCATCCTCTGCAACAAGGCCCTGTTCCCCG
TCAGGGTCCCCATCACCATCGCGCTCACGCCGCCCATCGCCAGGCTCCTCGCCCGCTGGAAGCTCGTCAAGAGCCTCAAG
CAGACCTGAGCTGTGAGCCCAATGACCCCCCCTCTACGACTTCAGCATCGCCTAGTTGGAATCAAAATTAGATGCAAATT
TTGCTACACTGTACCATTGGTTTAGCTGTGAGAGGATTTGTGAATTATGCCCGTCTTCTATCCTAACTATTGGGATTGGT
AACTTTGCAATGTAATTGGTAGCTTCTTTTCTTTTCTGAATGGAG-TACTGTTCTTCATTTGTACTGCTCCGTACCTAGT
TGTCAAGTACGGCTTTGAACAAGTTACAATATTAATACA-----------------------------------------
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>chr5B_1_TraesCS5B01G333800
AGCCCGACGCAAAAACCCAGGCCCAGGCCCGGCCCGGCCTGACCATCGGGCCTGTTTTCTAGGCCCGAGCCCGGCCCGAA
CATGTAAAAGCCCGTCGGGCTCCGGGCCGGCCCGGCACGACCTTCAGAAAACCGCAAAAACGACGGGCCCGGGCCCAGCC
CGGCCCGGCCTTCGGGCTTAAAATCTAGGCCCGAGCCCGGCCTGGGGGCAGCGTCGGGCCGGGCCGGGTCGGGCTTTTTC
GGGCCGGGTCAGGCCGGGCCGGCCGGGCCGGGCTTCCCATGGCCAGGTCTAGTCTAGCATCGGTCGACATTAGTCTTCAA
TGGATCTCCATGTATTCAGTTTTCGTTCATGTCTCTACAGGTTGGACCCTTCCGATCTACGCCTATCTTCATCGACGACG
GTTGCTGTTCTGGTGTGCTGGACCCGTGGGTCCT--TAACATGACGACTTTTCAACTGTCTACTACAACAATTTTTGCCC
GC-TCCGCTTAGGGAGGGGTAGCGCCGGCGACGCACATTCGGCTCGCTCCAGTGCTTGTAGTCGTCGCCAGGTGGTCAAC
TTATCTGGATGTACTAATATTTCGTTTTGAGTGTTGCTTGTACCGCCATGTCATCTGATGAATAGATCAGAAGTTTTTCT
AAA----AAAACATGCAGCTAAAAATGAGCTTAAAAGGTAATCAATGGAAAAGAAGGTCTTTTGAGATT---------GA
AAACATGTTCTAGCACAAGCTACCCAGAAGGCGTATTTCCTTGAGGTACACGCACGGCGTGCCGTGTCCGAGCATAGCCT
CTTC-CTCCAAGAAAGAAAGGGAGGCTCGCGGGTCGCCACGCACTCGGGTCCACGTCTCTTTTAGCCGCCGCCGTGCCGA
TCCGACGGACCGACCGACCAGAAAACCCTAGCCCGTCGCGCCGCC---GCCGCCGCCACCGCAAAATCTTAAACCCGCAC
GCACCTCCCCCTGCCCCGACCTCGCCGTCGGCGTCCTCAGCCATGGCGTTCACCGCCCGCATGAAGGACCTCATGAGGAA
GTACGGCAAGGTGGCCCTCGGTGTCCACGTCTCCGTCTCCGTCGCCTCCGTCTCCGGCCTCTACGTCGCCATCAACAACA
ACGTCGACGTCGACGCCATCTTCCGCAAGATCGGCATCAGCGCCCCCGGCACCGCCGCAGGCGACGCGGCCCTG------
CCCGCCCCCTCTCCCGGCGCCGGCGACGGGGCCCTCCCCCTCCCCGCCCCCGCCGTCGTCGTCGGCCAGGAGGCGCCGCG
GAACCGGACCGGGGAGCTCGCGGCGTCCAGCGGCGGCGCGCTCGCGCTCGCCATCCTCTGCAACAAGGCCCTGTTCCCCG
TCAGGGTCCCCATCACCATCGCGCTCACGCCGCCCATCGCCAGGCTCCTCGCCCGCTGGAAGCTCGTCAAGAGCCTCAAG
CAGACCTGAGCTGTGAGCCCAATGACCCCCCCTCTACGACTTCAGCATCGCCTAGTTGGAATCAAAATTAGATGCAAATT
TTGCTACACTGTACCATTGGTTTAGCTGTGAGAGGATTTGTGAATTATGCCCGTCTTCTATCCTAACTATTGGGATTGGT
AACTTTGCAATGTAATTGGTAGCTTCTTTTCTTTTCTGAATGGAG-TACTGTTCTTCATTTGTACTGCTCCGTACCTAGT
TGTCAAGTACGGCTTTGAACAAGTTACAATATTAATACACTGTTTTGAATATCTAGCCAATCCTCTTTT-TTCTTTGCAG
TGTTCTGGATTCAGTCTGAACAACCTCGACAATGTAGTTATCTGTATATCTTATGTGTACAGGCTAAAATACTCTGTTTT
AAACAGTTTAAATTCTTAACACCAGTGTTACTAGTGTCAATGCATCCGAAATTA---------TGTAATAGATTCACAAC
TG---------------CCATTTGGAATGACTGTTTATAAATTCTAAGCTTTTTGAGTGTATAAACATCTAGTGCATATC
AGTGGCAGCCTGACATATATGTCCCTTTGGCTAGTTTGTAGCCTTTGTTTGAACCTTGTTACTGCATAGTGTTCTCAAGC
CTACTTCGCGTTGTGCAATAACTTTCGTTTAAGC--GCATAGTGTGCTCACTGCTCAGTAACCTAGTATCATAATGTCTT
CAAGTAAAATGCACCTTTTTTTTATCAAAGAAGCTCTATGCTCCCAAATTTTAGTACTGAAACTGGAGCACACACAGAAA
CTCAGCTGAAATGCAATCATGTCTGGGAGAGGATTTGCCTGGGATTGTTTAAGCAATTCCCTTTATCGTCGACCCATTGC
CAATTGATTCTGACTTGTTTTATCGAGAGGAGAGGTGAATTGTGCAAAGGCTTGTAACTCTGCTGAAAAAGTCAGATTAT
ACTACTCCCTCCGTTCCTA-------------------------------------------------------------
------------------------------------------AATATTTGTCTTTGTAGAGATTTCAACAAGTGACTATA
TACGGAGCAAAATGAGTGAATCTACACTCTAAAATATGTCTATATACATCCGTATGTAGTCACTTGTTGAAATCT-----
----------------CTAGAAAGACAAATATTTAGGAACGGAGGAGTAGTTTTTAATGAATAGACAAATTATAAGGTCA
TGCACATGCATATTCTTTACATAACATTCTATTCCATGTGGACTGTCATATGCTGTTTACCACAGTGTTGTTGCTTGCTA
AATACAGTAGGATACTGAGAAATTTGTAGCTTTACTTGCTGTCATCATATTAATTATCAAATTCAGCTCC----------
---------------------------------------------
>chr5D_405
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----CTGTTCTGGTGTGTTGGTCATGCGTGAGATCATAACACGACGACTCTGTGACTATCTACCGCAACAAATTTTACTC
AGTTCCGGTGAGGGAGGGACGACAGCTACGGAGCGCCTTCAGCTTGCTATAGTGCTTATAGTCGTCGCTAGATGATCTAT
AGACCTAGCTGTA-----ATTTTATTATTTGTGTTCCTTTCACTGCCATGTCATATGAAGAATAGGTTGGAAGTTTTCTT
GAAACAGAAAACATGCAACTAAAAATGCGCTTAAAAGGTAACAAAGAAAAAATAAGTATATTTTTGTTAAAAAGATTGGA
AAACATGTTCTAGCGCAAGCTACCT-GAAGGCGTATTTCCTTGAGGTACACGCACGCCGTGTCGTGTCCGAGCATAGCCT
CTTTTCTCCAAGAAAGAAAGGGAGGCTCGCGGGTCGCCACGCACTCGGGTCCACGTCTCTTTTAGCCGCCGCCGTGCCGA
TCCGACGGACCGACCGACCAGAAAACCCTAGCCCGTCGCGCCGCCGCCGCCGTCGCCGCCGCAAAATCTTAAACCCGCAC
GCCCCTCCCTTGTCCCCGACCTCGCCGGCCGCGGCACCAGCCATGGCGTTCACCGCGCGCATGAAGGACCTCATGAGGAA
GTACGGCAAGGTGGCCCTCGGCGTCCACGTCTCCGTCTCCGTCGCCTCCGTCTCCGGTATGTACGTCGCCATCAACAACA
ACGTCGACGTCGACGCCATCTTCCGCAAGATCGGCATCAGCGCCCCCGGCACCGCCGCCGGCGACGCGGCCCTGCCCGCC
CCCGCCCCCGCTCCCGGCGCCGGCGACGGGGCCCTCCCCCTCCCCGCCCCCGCCGTCGTCGTCGGCCAGGAGGCGCCGCG
GAACCGGACCGGGGAGCTCGCGGCGTCCAGCGGCGGCGCGCTCGCGCTCGCCATCCTGTGCAACAAGGCCCTGTTCCCCG
TCAGGGTCCCCATCACCATCGCGCTCACGCCGCCCATCGCCAGGCTCCTCGCCCGCTGGAAGCTCGTCAAGAGCCTCAAG
CAGACCTGAGCTGTGAGCCCAATGACTCCCCCTCTACGACTTCAGCATCGCCTAGTTGGAATCAAAATTAGATGCAAATT
TTGCTGCACTGTACGATTGGTTTTGCTATGAGAGGATTTGTGAATTATGCCCGTCTTCTATCCTAACTAATGGGATTGGT
AATTTTGCAATGTAATTGGTAGCCTCTTTTCTTTTCTGT----AG-TACTGTCCTTCATTTGTACTGCT-----------
--------------TTGAACAAGTTGCGATATTAATACACTGCTCCGAATATCTAGCCAGTCCTCTTTTCTT----GCAG
TGTTCTGGATTCAGTTCCAACGACCTCGACAGTGTAGTTATCTGTATCTCTTTTGTGTGCAGGCTAAAATACTCTGTTTT
AAACAATTTAAATTCTTAACACCAGTGTGACTAGTGTCAATGCTTCACAAACTAGAAGAGAATTGTAATAGACTCGTAAC
TGTCTTC-TGAGCAAAACCATTTGGAATGACTACTAATAAATTCTAAGCTCTTTGAGTGTATAAATATCTAGTGCATATC
AGGGGCAGCCTGACATATATGTCCCTTTGATTCATTTGTATCCTTTGTTTGAACCTTGTTACTGCATAGTGTTCTCAAGC
CTACTTCGCGTTGTGCAATAACTTTCTTCAAGCTAGGCATAGTGTGCTCACTGTTA------------------------
CAAGTAAAATATACATTTTTG--ATCAAAGAAGCTCTGCGCTCCCAAATTTTACTACTGAAACTGGAGCACATACAGAAA
CTCAACGGAAATGTAATCATGTTTGTGAG---------------------------------------------------
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>chr5A_697
G-------------------------------------------------------------------------------
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------------------------------------------------------------------------AGATTGGA
AAACATGTTCAAGCACAAGCTACCCAGAAGGCGTATTTCCTTGAGGTACACGCACGGCGTGCCGTGTCCGAGCATAGCTT
C-TTTCTCCAAGAAAGAAAGGGAGGCTCGCGGGTCGCCACGCACTCGGGTCCACGTCTCTTTTAGCCGCCGCCGTGCCGA
TCCGACGGACCGACCGACCAGAAAACCCTAGCTCGTCGCGCCGCC---GCCGCCGCCGCCGCAAAATCTTAAACCCGCAC
GCCCCTCCCTTGTCCCCGACCTCGCCGGCCTTGGCACCAGCCATGGCGTTCACCGCGCGCATGAAGGACCTCATGAGGAA
GTACGGCAAGGTGGCCCTCGGCGTCCACGTCTCCGTCTCCGTCGCCTCCGTCTCCGGTATGTACGTCGCCATTAACAACA
ACGTCGACGTCGACGCCATCTTCCGCAAGATCGGCATCAGCGCCCCCGGCACCGCCGCCGCCGACGCGGCCCTCCCCGCC
CCCGCCCCCGCCCCCGGCGCCGGCGACGGGGCCCTCCCGAACCCCGCCCCCTCCGTCGTCGTCGGCCAGGAGGCGCCGCG
GAACCGGACCGGGGAGCTCGCGGCGTCCAGCGGCGGCGCGCTCGCGCTCGCCATCCTCTGCAACAAGGCCCTGTTCCCCG
TCAGGGTCCCCATCACCATCGCGCTCACGCCGCCCATCGCCAGGCTCCTCGCCCGCTGGAAGCTCGTCAAGAGCCTCAAG
CAGACCTGAGCTGTGAGCCCAATGACCCCCCCTCTACGACTTCAGCATCGCCTAGTTGGAATCAAAATTAGATGCAAATT
TTGCTACACTGTACGATTGGTTTAGCTGTGAGAGGATTTGTGAATTATGCCCGTCTTCTATCCTAACTATTGGAACTGGT
AACTTTGCAATGTAATTGGTAGCTTCCTTTCTTTTCTGGAGTACTCTACTGTTCTTCGTTTGTACTGCTCCTTACCTAGT
TGTCCAGTACGGCTTTGAACAAGTTACAATATAAATACACTGTTTCGAATATCTAGCCAATCCTCTTTT-TT----GCAG
TGTTCTGGATTCAGTTCCAACAACCTGGACAGTGTAGTTATCTGTATCTCTTTTCTGTACAGGCTAAAATACTCTGTTTT
AAACAGTTTTAATTCTTAACACCAGTGT---------CAGTGCATCAGAAATTGGAAGAGGATTGTAATAGAATCATAAC
TGCCTCTTTGAGCAAGACCATTTTGAATGACTATTAATAAATTCTAAGCTCTATGAGTGTATAAACATCTAGTGCATATC
AGGGGCAGCCCAACATATATGTCCCT------------------------------------------------------
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>chr5B_2209
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----------------------CTGGGAGAGGATTTGCCTGGGATTGTTTAAGCAATTCCCTTAATCGTCGACCCCTTGC
CAATTGATTCTGACTTGTTTTATCGAGAGCAGAGGCGAATTGTGCAAAGGCTTGTAACTCTGCGAATTGAGCTAGTTCCA
ATTTTGATTTGCCAGCTACTTGTTTCATGGCTTTAATTTGAGCCGCGGATCCTACTCTGGAAACAGAAATACCCACATTA
ATAGCGGGTCGAATTCCGGCATTGAATAGATCCGCAGATAAGAATATTTGTCCATCTGTAATGGAGATTACATTAGTAGG
AATATAGGCGGAAACGTCTCCAGATTGAGTCTCAACTATTGGTAAAGCGGTCATACTTCCTTCAAAAGGATTTCCGCTTG
CTCGGTGAATGTCTTGCTAGAAGATATAATTTCTTGGAATTGAGGTTTAGTATCTTTTAGATGTTTACGTAACTCATCCA
GAAATTTATTTACCTGTTCAATTTCTAACGAATCAAGATATCCTCTTGTTCCGGTATAAATAGTAGCTATCTGCTCTTCC
ACTGGGAGAGGATTTGCCTGGGATTGTTTAAGCAATTCCCTTAATCGTCGACCCCTTGCCAATTGATTCTGACTTGTTTT
ATCGAGAGCAGAGGCGAATTGTGCAAAGGCTTGTAACTCTGCGAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS-------------S---S-SS-S-S-SSS--------S-------S-SSS---S-----SS------S----S-S-
SS-----S-S--------SSSS-SS-SS--SS--S-S---S---S---SS-------S----------S--S--S--S-S
SS-S--S-S----SSSSS----SS--S-SS-----S---SS--S----------S---S------S-SS--------SS-
S----------------S---------S-------------SS--SSS----S---SSSS---SS-S-S-----------
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---S----------------------------------------------------------------------------
---------------------------------------------------------S----------------------
--S------SSSS--------------S-S---S-SS-------------------S-----------------------
---------------------S-----------------------------------SS-S-------------------
----------------------------------------------------------S---------------------
---------S----------------------------------------------------------------------
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--------------S-----------------------------------------------------------------
--------------------------------------S-SSS----------------------------S--------
----S----------------------------------------S--------------------------SSSS----
---------------SSS-------------S---------------S----S---------------------------
----------------------------S-----------------S-------------------------S---S---
--------------------------------S--S--------------S-----------------------------
--S--------------------------SS-SS------S---------------------------------------
--------------------------S-SS-SSS-------------------S-SSSSSSSSSSSSSSSSSSSSSSSSS
----------SS--S-----SSS--------------SS--------------S------------------S-------
----S-S------S-------------------------------------------------S-----------S----
-----------------------------S-----S---------------------------SS-SSS--SS--S-SSS
-S-SSSSSS-S-SSS-SSS-------------------------------------------------------------
----------------------------------------------------SS-S-SS-SSSSSS-SS-SS-S-S--SS
S-SSS--SSSS-SSS--SSSSSS-SSSSS-SSS-SS-S-SSS--S-SSSSSSSSSS-SSSSS-SSSSS--SS--S-----
----------------------SSSSS---S-S-S----SS----SS----S-S-SS-SS--SSSS-SS-S-SSSSSS--
SSS-SS-SSS--SSSS--SS--SS-SSS-S-S--S-SS-SSS--S-SS-SSSSSSS-S-SS-SSSSS-SSS----SSSSS
-S-SSSSS-----SSSSSSSSSS----SSSSSS-S--S-SS-S---S-SSSSSSSS-SSS-S-SSSS--S----------
---------------------------------------------
>forward_377
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-------------------------------------CAGGTTGGACCCTTCCGATC-----------------------
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>reverse_2304
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---------------------------------------------------------------TATCGTCGACCCATTGC
CAA-----------------------------------------------------------------------------
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