Multiple sequence alignment - TraesCS5B01G330100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G330100 chr5B 100.000 2918 0 0 1 2918 514280627 514277710 0.000000e+00 5389
1 TraesCS5B01G330100 chr5B 86.066 122 15 2 1386 1506 211146510 211146630 2.360000e-26 130
2 TraesCS5B01G330100 chr5D 91.230 2235 77 38 3 2191 425078456 425076295 0.000000e+00 2931
3 TraesCS5B01G330100 chr5D 86.408 412 20 13 2465 2856 425076297 425075902 4.500000e-113 418
4 TraesCS5B01G330100 chr5D 86.066 122 15 2 1386 1506 200501539 200501659 2.360000e-26 130
5 TraesCS5B01G330100 chr5A 88.968 2248 101 61 1 2191 539094456 539092299 0.000000e+00 2641
6 TraesCS5B01G330100 chr5A 99.286 280 2 0 2189 2468 34705278 34705557 9.330000e-140 507
7 TraesCS5B01G330100 chr5A 98.592 284 4 0 2189 2472 693141408 693141125 1.210000e-138 503
8 TraesCS5B01G330100 chr5A 84.689 418 26 19 2465 2875 539092301 539091915 1.640000e-102 383
9 TraesCS5B01G330100 chr5A 86.066 122 15 2 1386 1506 214166890 214167010 2.360000e-26 130
10 TraesCS5B01G330100 chr4A 99.642 279 1 0 2189 2467 615029868 615030146 7.210000e-141 510
11 TraesCS5B01G330100 chr4A 85.000 120 18 0 1387 1506 517884847 517884966 3.950000e-24 122
12 TraesCS5B01G330100 chr1B 99.288 281 2 0 2187 2467 615614590 615614870 2.590000e-140 508
13 TraesCS5B01G330100 chr1B 98.592 284 4 0 2187 2470 596317876 596317593 1.210000e-138 503
14 TraesCS5B01G330100 chr1B 90.741 270 25 0 1001 1270 487951482 487951213 7.690000e-96 361
15 TraesCS5B01G330100 chr3B 99.286 280 2 0 2188 2467 663556703 663556424 9.330000e-140 507
16 TraesCS5B01G330100 chr3B 92.481 266 20 0 1001 1266 653152051 653152316 5.900000e-102 381
17 TraesCS5B01G330100 chr6B 98.936 282 3 0 2186 2467 715212081 715211800 3.360000e-139 505
18 TraesCS5B01G330100 chr6A 98.596 285 4 0 2183 2467 153681473 153681189 3.360000e-139 505
19 TraesCS5B01G330100 chr2A 99.283 279 2 0 2187 2465 513096297 513096575 3.360000e-139 505
20 TraesCS5B01G330100 chr3A 93.233 266 18 0 1001 1266 633922101 633922366 2.730000e-105 392
21 TraesCS5B01G330100 chr1A 91.353 266 23 0 1001 1266 463461697 463461432 5.940000e-97 364
22 TraesCS5B01G330100 chr1D 90.000 270 27 0 1001 1270 364625272 364625003 1.660000e-92 350
23 TraesCS5B01G330100 chr7D 89.057 265 29 0 1001 1265 262698956 262698692 2.170000e-86 329
24 TraesCS5B01G330100 chr7D 87.069 116 15 0 1391 1506 262698692 262698577 6.560000e-27 132
25 TraesCS5B01G330100 chr7B 86.806 288 35 3 980 1265 241107659 241107945 4.690000e-83 318
26 TraesCS5B01G330100 chr4B 85.000 120 18 0 1387 1506 100576909 100577028 3.950000e-24 122
27 TraesCS5B01G330100 chr4D 84.167 120 19 0 1387 1506 68053667 68053786 1.840000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G330100 chr5B 514277710 514280627 2917 True 5389.0 5389 100.0000 1 2918 1 chr5B.!!$R1 2917
1 TraesCS5B01G330100 chr5D 425075902 425078456 2554 True 1674.5 2931 88.8190 3 2856 2 chr5D.!!$R1 2853
2 TraesCS5B01G330100 chr5A 539091915 539094456 2541 True 1512.0 2641 86.8285 1 2875 2 chr5A.!!$R2 2874

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
908 967 0.178992 CTTCCACTCCTGCAAACCCA 60.179 55.0 0.0 0.0 0.0 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2876 2996 0.038251 TTGACAGCACGCTCTTCGAT 60.038 50.0 0.0 0.0 41.67 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 87 1.271054 ACTGCATCTGGGTCACAACTC 60.271 52.381 0.00 0.00 0.00 3.01
150 152 3.438781 TCCAACGTGGCACATATTCTTTC 59.561 43.478 19.09 0.00 44.52 2.62
151 153 3.416277 CAACGTGGCACATATTCTTTCG 58.584 45.455 19.09 1.62 44.52 3.46
218 221 7.809806 GTGTCTTACAAAAAGATTGGGATTCTG 59.190 37.037 0.00 0.00 0.00 3.02
263 266 7.328737 GTCGATGCGGATAATTTACTTGTAGAT 59.671 37.037 0.00 0.00 0.00 1.98
268 271 9.337396 TGCGGATAATTTACTTGTAGATTGAAT 57.663 29.630 6.76 0.00 0.00 2.57
277 280 9.667107 TTTACTTGTAGATTGAATGGGTTAGAG 57.333 33.333 0.00 0.00 0.00 2.43
290 293 0.617820 GTTAGAGACCCCAGGCCTGA 60.618 60.000 34.91 8.55 0.00 3.86
291 294 0.325671 TTAGAGACCCCAGGCCTGAG 60.326 60.000 34.91 25.56 0.00 3.35
297 311 1.153756 CCCCAGGCCTGAGTTTTGT 59.846 57.895 34.91 0.00 0.00 2.83
298 312 1.181098 CCCCAGGCCTGAGTTTTGTG 61.181 60.000 34.91 14.22 0.00 3.33
305 319 2.479560 GGCCTGAGTTTTGTGTGTGTTC 60.480 50.000 0.00 0.00 0.00 3.18
322 336 4.141892 TGTGTTCCACGAGGAGTTTTTAGA 60.142 41.667 0.78 0.00 46.74 2.10
348 362 1.514553 GGCAGCATCAAGGGAAAGC 59.485 57.895 0.00 0.00 0.00 3.51
356 370 2.034221 AAGGGAAAGCGAGTGGGC 59.966 61.111 0.00 0.00 0.00 5.36
387 405 2.224695 GGGTGAACCTAATAATCCCCCG 60.225 54.545 0.00 0.00 35.85 5.73
388 406 2.440627 GGTGAACCTAATAATCCCCCGT 59.559 50.000 0.00 0.00 0.00 5.28
395 413 6.077202 ACCTAATAATCCCCCGTAAACAAA 57.923 37.500 0.00 0.00 0.00 2.83
451 478 6.365839 GGTTAGTTAGCTGTTAAAACCGAAC 58.634 40.000 0.00 0.19 27.91 3.95
452 479 4.720530 AGTTAGCTGTTAAAACCGAACG 57.279 40.909 0.00 0.00 0.00 3.95
453 480 4.370917 AGTTAGCTGTTAAAACCGAACGA 58.629 39.130 0.00 0.00 0.00 3.85
454 481 4.810491 AGTTAGCTGTTAAAACCGAACGAA 59.190 37.500 0.00 0.00 0.00 3.85
538 565 1.153449 TGAATCGGGCAAGTAGGCG 60.153 57.895 0.00 0.00 45.36 5.52
568 595 2.666190 CTGTGTGTCCTGTGCCCG 60.666 66.667 0.00 0.00 0.00 6.13
602 629 5.412594 TGTGTCATTGTTGCCTTTCTATCTC 59.587 40.000 0.00 0.00 0.00 2.75
666 703 2.613977 GGTGATGAGTTGAGGTGAGGTG 60.614 54.545 0.00 0.00 0.00 4.00
668 705 2.564504 TGATGAGTTGAGGTGAGGTGAG 59.435 50.000 0.00 0.00 0.00 3.51
670 707 1.343069 GAGTTGAGGTGAGGTGAGGT 58.657 55.000 0.00 0.00 0.00 3.85
671 708 1.001406 GAGTTGAGGTGAGGTGAGGTG 59.999 57.143 0.00 0.00 0.00 4.00
672 709 1.048601 GTTGAGGTGAGGTGAGGTGA 58.951 55.000 0.00 0.00 0.00 4.02
673 710 1.001406 GTTGAGGTGAGGTGAGGTGAG 59.999 57.143 0.00 0.00 0.00 3.51
676 713 0.543174 AGGTGAGGTGAGGTGAGGTC 60.543 60.000 0.00 0.00 0.00 3.85
677 714 0.832135 GGTGAGGTGAGGTGAGGTCA 60.832 60.000 0.00 0.00 0.00 4.02
678 715 1.270907 GTGAGGTGAGGTGAGGTCAT 58.729 55.000 0.00 0.00 0.00 3.06
679 716 1.066573 GTGAGGTGAGGTGAGGTCATG 60.067 57.143 0.00 0.00 0.00 3.07
680 717 1.203174 TGAGGTGAGGTGAGGTCATGA 60.203 52.381 0.00 0.00 0.00 3.07
681 718 1.205893 GAGGTGAGGTGAGGTCATGAC 59.794 57.143 17.91 17.91 0.00 3.06
691 728 4.480480 GTCATGACCTGGGGGAGA 57.520 61.111 15.31 0.00 36.25 3.71
692 729 2.216148 GTCATGACCTGGGGGAGAG 58.784 63.158 15.31 0.00 36.25 3.20
693 730 1.003442 TCATGACCTGGGGGAGAGG 59.997 63.158 0.00 0.00 36.57 3.69
694 731 2.074948 CATGACCTGGGGGAGAGGG 61.075 68.421 0.00 0.00 34.56 4.30
695 732 2.264378 ATGACCTGGGGGAGAGGGA 61.264 63.158 0.00 0.00 34.56 4.20
696 733 2.041405 GACCTGGGGGAGAGGGAG 60.041 72.222 0.00 0.00 34.56 4.30
697 734 2.540910 ACCTGGGGGAGAGGGAGA 60.541 66.667 0.00 0.00 34.56 3.71
727 780 2.689034 GGGAGGCCTACCAGTGCT 60.689 66.667 30.89 0.00 39.06 4.40
728 781 1.382695 GGGAGGCCTACCAGTGCTA 60.383 63.158 30.89 0.00 39.06 3.49
729 782 1.687297 GGGAGGCCTACCAGTGCTAC 61.687 65.000 30.89 0.00 39.06 3.58
821 880 1.000955 AGTGCCGCCTATAAAGATCCG 59.999 52.381 0.00 0.00 0.00 4.18
830 889 1.996798 ATAAAGATCCGAGCCTCCGA 58.003 50.000 0.00 0.00 0.00 4.55
862 921 3.547513 CCCGTAGCACTAGCCCCC 61.548 72.222 0.00 0.00 43.56 5.40
863 922 2.762459 CCGTAGCACTAGCCCCCA 60.762 66.667 0.00 0.00 43.56 4.96
864 923 2.363975 CCGTAGCACTAGCCCCCAA 61.364 63.158 0.00 0.00 43.56 4.12
865 924 1.153429 CGTAGCACTAGCCCCCAAC 60.153 63.158 0.00 0.00 43.56 3.77
866 925 1.895020 CGTAGCACTAGCCCCCAACA 61.895 60.000 0.00 0.00 43.56 3.33
867 926 0.326927 GTAGCACTAGCCCCCAACAA 59.673 55.000 0.00 0.00 43.56 2.83
879 938 2.615869 CCCCAACAACAACAACAACAG 58.384 47.619 0.00 0.00 0.00 3.16
908 967 0.178992 CTTCCACTCCTGCAAACCCA 60.179 55.000 0.00 0.00 0.00 4.51
952 1012 2.158813 ACCGAGCACAAGAAAAGGAGAA 60.159 45.455 0.00 0.00 0.00 2.87
953 1013 2.481952 CCGAGCACAAGAAAAGGAGAAG 59.518 50.000 0.00 0.00 0.00 2.85
954 1014 2.481952 CGAGCACAAGAAAAGGAGAAGG 59.518 50.000 0.00 0.00 0.00 3.46
955 1015 3.744660 GAGCACAAGAAAAGGAGAAGGA 58.255 45.455 0.00 0.00 0.00 3.36
956 1016 4.137543 GAGCACAAGAAAAGGAGAAGGAA 58.862 43.478 0.00 0.00 0.00 3.36
957 1017 4.140536 AGCACAAGAAAAGGAGAAGGAAG 58.859 43.478 0.00 0.00 0.00 3.46
958 1018 3.254411 GCACAAGAAAAGGAGAAGGAAGG 59.746 47.826 0.00 0.00 0.00 3.46
959 1019 4.464947 CACAAGAAAAGGAGAAGGAAGGT 58.535 43.478 0.00 0.00 0.00 3.50
960 1020 4.276926 CACAAGAAAAGGAGAAGGAAGGTG 59.723 45.833 0.00 0.00 0.00 4.00
961 1021 4.079730 ACAAGAAAAGGAGAAGGAAGGTGT 60.080 41.667 0.00 0.00 0.00 4.16
996 1059 3.551250 GGCAGACCGTCTAAAGAGATAGC 60.551 52.174 0.00 0.00 33.14 2.97
1274 1337 0.719465 GGCAACAAGTACGTCCATCG 59.281 55.000 0.00 0.00 46.00 3.84
1306 1373 8.206867 TCCATAGCATATATAGCTCCAATGAAC 58.793 37.037 11.40 0.00 42.32 3.18
1325 1392 1.272781 CGAACGATCCTCTGTTCTGC 58.727 55.000 8.83 0.00 41.74 4.26
1345 1412 2.746142 GCTCTACATGCATGGCCTTGTA 60.746 50.000 29.41 15.59 0.00 2.41
1349 1416 3.598019 ACATGCATGGCCTTGTAAAAG 57.402 42.857 29.41 11.67 0.00 2.27
1356 1423 3.085952 TGGCCTTGTAAAAGCATAGCT 57.914 42.857 3.32 0.00 42.56 3.32
1395 1462 0.669318 TTGACGAACGCAGATGGTCC 60.669 55.000 0.00 0.00 0.00 4.46
1548 1615 1.526887 GCGTCCAACATCACCATATCG 59.473 52.381 0.00 0.00 0.00 2.92
1551 1618 3.621268 CGTCCAACATCACCATATCGTTT 59.379 43.478 0.00 0.00 0.00 3.60
1731 1798 1.889530 CGGACCTGAACCTGGACCTC 61.890 65.000 0.00 0.00 35.83 3.85
1939 2026 4.345286 AGCAGAGCACCCCCTCCT 62.345 66.667 0.00 0.00 32.17 3.69
1940 2027 3.791586 GCAGAGCACCCCCTCCTC 61.792 72.222 0.00 0.00 32.17 3.71
1941 2028 3.086600 CAGAGCACCCCCTCCTCC 61.087 72.222 0.00 0.00 32.17 4.30
1942 2029 4.423209 AGAGCACCCCCTCCTCCC 62.423 72.222 0.00 0.00 32.17 4.30
1943 2030 4.423209 GAGCACCCCCTCCTCCCT 62.423 72.222 0.00 0.00 0.00 4.20
1944 2031 4.748798 AGCACCCCCTCCTCCCTG 62.749 72.222 0.00 0.00 0.00 4.45
1946 2033 4.748798 CACCCCCTCCTCCCTGCT 62.749 72.222 0.00 0.00 0.00 4.24
1947 2034 4.423209 ACCCCCTCCTCCCTGCTC 62.423 72.222 0.00 0.00 0.00 4.26
1949 2036 4.101077 CCCCTCCTCCCTGCTCCT 62.101 72.222 0.00 0.00 0.00 3.69
1950 2037 2.445654 CCCTCCTCCCTGCTCCTC 60.446 72.222 0.00 0.00 0.00 3.71
1951 2038 2.695597 CCTCCTCCCTGCTCCTCT 59.304 66.667 0.00 0.00 0.00 3.69
1952 2039 1.457455 CCTCCTCCCTGCTCCTCTC 60.457 68.421 0.00 0.00 0.00 3.20
2000 2087 4.794334 TGGTTTAGCCTGTAGGTGAAAAA 58.206 39.130 0.00 0.00 38.35 1.94
2191 2289 2.831333 CTGGCTGGCTCACTGTATAAG 58.169 52.381 2.00 0.00 0.00 1.73
2192 2290 1.486310 TGGCTGGCTCACTGTATAAGG 59.514 52.381 2.00 0.00 0.00 2.69
2193 2291 1.587547 GCTGGCTCACTGTATAAGGC 58.412 55.000 4.34 4.34 36.22 4.35
2194 2292 1.139853 GCTGGCTCACTGTATAAGGCT 59.860 52.381 10.44 0.00 36.60 4.58
2195 2293 2.831333 CTGGCTCACTGTATAAGGCTG 58.169 52.381 10.44 7.29 36.60 4.85
2196 2294 1.486310 TGGCTCACTGTATAAGGCTGG 59.514 52.381 10.44 0.00 36.60 4.85
2197 2295 1.486726 GGCTCACTGTATAAGGCTGGT 59.513 52.381 0.00 0.00 33.16 4.00
2198 2296 2.483889 GGCTCACTGTATAAGGCTGGTC 60.484 54.545 0.00 0.00 33.16 4.02
2199 2297 2.168521 GCTCACTGTATAAGGCTGGTCA 59.831 50.000 0.00 0.00 0.00 4.02
2200 2298 3.181461 GCTCACTGTATAAGGCTGGTCAT 60.181 47.826 0.00 0.00 0.00 3.06
2201 2299 4.039245 GCTCACTGTATAAGGCTGGTCATA 59.961 45.833 0.00 0.00 0.00 2.15
2202 2300 5.777802 CTCACTGTATAAGGCTGGTCATAG 58.222 45.833 0.00 0.00 0.00 2.23
2203 2301 5.208890 TCACTGTATAAGGCTGGTCATAGT 58.791 41.667 0.00 0.00 0.00 2.12
2204 2302 5.069119 TCACTGTATAAGGCTGGTCATAGTG 59.931 44.000 10.12 10.12 34.65 2.74
2205 2303 4.345257 ACTGTATAAGGCTGGTCATAGTGG 59.655 45.833 0.00 0.00 0.00 4.00
2206 2304 3.646162 TGTATAAGGCTGGTCATAGTGGG 59.354 47.826 0.00 0.00 0.00 4.61
2207 2305 2.561209 TAAGGCTGGTCATAGTGGGA 57.439 50.000 0.00 0.00 0.00 4.37
2208 2306 1.207791 AAGGCTGGTCATAGTGGGAG 58.792 55.000 0.00 0.00 0.00 4.30
2209 2307 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.000 0.00 0.00 0.00 3.85
2210 2308 1.291033 AGGCTGGTCATAGTGGGAGTA 59.709 52.381 0.00 0.00 0.00 2.59
2211 2309 2.116238 GGCTGGTCATAGTGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
2212 2310 2.158943 GGCTGGTCATAGTGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
2213 2311 2.500098 GCTGGTCATAGTGGGAGTAACA 59.500 50.000 0.00 0.00 0.00 2.41
2214 2312 3.134804 GCTGGTCATAGTGGGAGTAACAT 59.865 47.826 0.00 0.00 0.00 2.71
2215 2313 4.344102 GCTGGTCATAGTGGGAGTAACATA 59.656 45.833 0.00 0.00 0.00 2.29
2216 2314 5.163343 GCTGGTCATAGTGGGAGTAACATAA 60.163 44.000 0.00 0.00 0.00 1.90
2217 2315 6.479972 TGGTCATAGTGGGAGTAACATAAG 57.520 41.667 0.00 0.00 0.00 1.73
2218 2316 5.962031 TGGTCATAGTGGGAGTAACATAAGT 59.038 40.000 0.00 0.00 0.00 2.24
2219 2317 7.127405 TGGTCATAGTGGGAGTAACATAAGTA 58.873 38.462 0.00 0.00 0.00 2.24
2220 2318 7.287005 TGGTCATAGTGGGAGTAACATAAGTAG 59.713 40.741 0.00 0.00 0.00 2.57
2221 2319 7.287235 GGTCATAGTGGGAGTAACATAAGTAGT 59.713 40.741 0.00 0.00 0.00 2.73
2222 2320 9.347240 GTCATAGTGGGAGTAACATAAGTAGTA 57.653 37.037 0.00 0.00 0.00 1.82
2223 2321 9.925545 TCATAGTGGGAGTAACATAAGTAGTAA 57.074 33.333 0.00 0.00 0.00 2.24
2224 2322 9.962783 CATAGTGGGAGTAACATAAGTAGTAAC 57.037 37.037 0.00 0.00 0.00 2.50
2225 2323 9.705103 ATAGTGGGAGTAACATAAGTAGTAACA 57.295 33.333 0.00 0.00 0.00 2.41
2226 2324 8.605325 AGTGGGAGTAACATAAGTAGTAACAT 57.395 34.615 0.00 0.00 0.00 2.71
2227 2325 9.705103 AGTGGGAGTAACATAAGTAGTAACATA 57.295 33.333 0.00 0.00 0.00 2.29
2228 2326 9.962783 GTGGGAGTAACATAAGTAGTAACATAG 57.037 37.037 0.00 0.00 0.00 2.23
2229 2327 9.925545 TGGGAGTAACATAAGTAGTAACATAGA 57.074 33.333 0.00 0.00 0.00 1.98
2234 2332 9.976511 GTAACATAAGTAGTAACATAGATGCCA 57.023 33.333 0.00 0.00 0.00 4.92
2235 2333 8.888579 AACATAAGTAGTAACATAGATGCCAC 57.111 34.615 0.00 0.00 0.00 5.01
2236 2334 8.018537 ACATAAGTAGTAACATAGATGCCACA 57.981 34.615 0.00 0.00 0.00 4.17
2237 2335 8.651389 ACATAAGTAGTAACATAGATGCCACAT 58.349 33.333 0.00 0.00 0.00 3.21
2241 2339 7.155328 AGTAGTAACATAGATGCCACATAAGC 58.845 38.462 0.00 0.00 0.00 3.09
2242 2340 5.928976 AGTAACATAGATGCCACATAAGCA 58.071 37.500 0.00 0.00 45.94 3.91
2243 2341 6.356556 AGTAACATAGATGCCACATAAGCAA 58.643 36.000 0.00 0.00 44.83 3.91
2244 2342 6.828273 AGTAACATAGATGCCACATAAGCAAA 59.172 34.615 0.00 0.00 44.83 3.68
2245 2343 6.528537 AACATAGATGCCACATAAGCAAAA 57.471 33.333 0.00 0.00 44.83 2.44
2246 2344 6.720112 ACATAGATGCCACATAAGCAAAAT 57.280 33.333 0.00 0.00 44.83 1.82
2247 2345 7.116075 ACATAGATGCCACATAAGCAAAATT 57.884 32.000 0.00 0.00 44.83 1.82
2248 2346 6.982141 ACATAGATGCCACATAAGCAAAATTG 59.018 34.615 0.00 0.00 44.83 2.32
2249 2347 5.664294 AGATGCCACATAAGCAAAATTGA 57.336 34.783 0.00 0.00 44.83 2.57
2250 2348 6.229936 AGATGCCACATAAGCAAAATTGAT 57.770 33.333 0.00 0.00 44.83 2.57
2251 2349 6.046593 AGATGCCACATAAGCAAAATTGATG 58.953 36.000 0.00 0.00 44.83 3.07
2252 2350 5.402997 TGCCACATAAGCAAAATTGATGA 57.597 34.783 0.00 0.00 37.28 2.92
2253 2351 5.979993 TGCCACATAAGCAAAATTGATGAT 58.020 33.333 0.00 0.00 37.28 2.45
2254 2352 5.813157 TGCCACATAAGCAAAATTGATGATG 59.187 36.000 7.11 7.11 40.47 3.07
2255 2353 5.813672 GCCACATAAGCAAAATTGATGATGT 59.186 36.000 8.28 8.28 46.67 3.06
2258 2356 5.813672 ACATAAGCAAAATTGATGATGTGGC 59.186 36.000 12.42 0.00 44.65 5.01
2259 2357 3.965379 AGCAAAATTGATGATGTGGCA 57.035 38.095 0.00 0.00 0.00 4.92
2260 2358 4.274602 AGCAAAATTGATGATGTGGCAA 57.725 36.364 0.00 0.00 0.00 4.52
2261 2359 4.250464 AGCAAAATTGATGATGTGGCAAG 58.750 39.130 0.00 0.00 0.00 4.01
2262 2360 3.998341 GCAAAATTGATGATGTGGCAAGT 59.002 39.130 0.00 0.00 0.00 3.16
2263 2361 5.047164 AGCAAAATTGATGATGTGGCAAGTA 60.047 36.000 0.00 0.00 0.00 2.24
2264 2362 5.290158 GCAAAATTGATGATGTGGCAAGTAG 59.710 40.000 0.00 0.00 0.00 2.57
2265 2363 6.392354 CAAAATTGATGATGTGGCAAGTAGT 58.608 36.000 0.00 0.00 0.00 2.73
2266 2364 6.594788 AAATTGATGATGTGGCAAGTAGTT 57.405 33.333 0.00 0.00 0.00 2.24
2267 2365 7.701539 AAATTGATGATGTGGCAAGTAGTTA 57.298 32.000 0.00 0.00 0.00 2.24
2268 2366 7.701539 AATTGATGATGTGGCAAGTAGTTAA 57.298 32.000 0.00 0.00 0.00 2.01
2269 2367 7.886629 ATTGATGATGTGGCAAGTAGTTAAT 57.113 32.000 0.00 0.00 0.00 1.40
2270 2368 6.682423 TGATGATGTGGCAAGTAGTTAATG 57.318 37.500 0.00 0.00 0.00 1.90
2271 2369 6.413892 TGATGATGTGGCAAGTAGTTAATGA 58.586 36.000 0.00 0.00 0.00 2.57
2272 2370 6.539826 TGATGATGTGGCAAGTAGTTAATGAG 59.460 38.462 0.00 0.00 0.00 2.90
2273 2371 5.185454 TGATGTGGCAAGTAGTTAATGAGG 58.815 41.667 0.00 0.00 0.00 3.86
2274 2372 4.901197 TGTGGCAAGTAGTTAATGAGGA 57.099 40.909 0.00 0.00 0.00 3.71
2275 2373 4.832248 TGTGGCAAGTAGTTAATGAGGAG 58.168 43.478 0.00 0.00 0.00 3.69
2276 2374 4.530553 TGTGGCAAGTAGTTAATGAGGAGA 59.469 41.667 0.00 0.00 0.00 3.71
2277 2375 5.112686 GTGGCAAGTAGTTAATGAGGAGAG 58.887 45.833 0.00 0.00 0.00 3.20
2278 2376 5.023452 TGGCAAGTAGTTAATGAGGAGAGA 58.977 41.667 0.00 0.00 0.00 3.10
2279 2377 5.127845 TGGCAAGTAGTTAATGAGGAGAGAG 59.872 44.000 0.00 0.00 0.00 3.20
2280 2378 5.452636 GGCAAGTAGTTAATGAGGAGAGAGG 60.453 48.000 0.00 0.00 0.00 3.69
2281 2379 5.596845 CAAGTAGTTAATGAGGAGAGAGGC 58.403 45.833 0.00 0.00 0.00 4.70
2282 2380 4.873010 AGTAGTTAATGAGGAGAGAGGCA 58.127 43.478 0.00 0.00 0.00 4.75
2283 2381 5.273208 AGTAGTTAATGAGGAGAGAGGCAA 58.727 41.667 0.00 0.00 0.00 4.52
2284 2382 5.721960 AGTAGTTAATGAGGAGAGAGGCAAA 59.278 40.000 0.00 0.00 0.00 3.68
2285 2383 5.707066 AGTTAATGAGGAGAGAGGCAAAT 57.293 39.130 0.00 0.00 0.00 2.32
2286 2384 6.814954 AGTTAATGAGGAGAGAGGCAAATA 57.185 37.500 0.00 0.00 0.00 1.40
2287 2385 6.825610 AGTTAATGAGGAGAGAGGCAAATAG 58.174 40.000 0.00 0.00 0.00 1.73
2288 2386 6.613271 AGTTAATGAGGAGAGAGGCAAATAGA 59.387 38.462 0.00 0.00 0.00 1.98
2289 2387 5.549742 AATGAGGAGAGAGGCAAATAGAG 57.450 43.478 0.00 0.00 0.00 2.43
2290 2388 3.987745 TGAGGAGAGAGGCAAATAGAGT 58.012 45.455 0.00 0.00 0.00 3.24
2291 2389 5.130705 TGAGGAGAGAGGCAAATAGAGTA 57.869 43.478 0.00 0.00 0.00 2.59
2292 2390 5.519808 TGAGGAGAGAGGCAAATAGAGTAA 58.480 41.667 0.00 0.00 0.00 2.24
2293 2391 5.361285 TGAGGAGAGAGGCAAATAGAGTAAC 59.639 44.000 0.00 0.00 0.00 2.50
2294 2392 5.273208 AGGAGAGAGGCAAATAGAGTAACA 58.727 41.667 0.00 0.00 0.00 2.41
2295 2393 5.902431 AGGAGAGAGGCAAATAGAGTAACAT 59.098 40.000 0.00 0.00 0.00 2.71
2296 2394 7.069986 AGGAGAGAGGCAAATAGAGTAACATA 58.930 38.462 0.00 0.00 0.00 2.29
2297 2395 7.565398 AGGAGAGAGGCAAATAGAGTAACATAA 59.435 37.037 0.00 0.00 0.00 1.90
2298 2396 8.371699 GGAGAGAGGCAAATAGAGTAACATAAT 58.628 37.037 0.00 0.00 0.00 1.28
2317 2415 8.479313 ACATAATATGTTACCATCACATAGCG 57.521 34.615 0.00 0.00 41.63 4.26
2318 2416 7.549134 ACATAATATGTTACCATCACATAGCGG 59.451 37.037 0.00 0.00 41.63 5.52
2319 2417 3.838244 ATGTTACCATCACATAGCGGT 57.162 42.857 0.00 0.00 32.88 5.68
2320 2418 3.620427 TGTTACCATCACATAGCGGTT 57.380 42.857 0.00 0.00 32.81 4.44
2321 2419 3.945346 TGTTACCATCACATAGCGGTTT 58.055 40.909 0.00 0.00 32.81 3.27
2322 2420 3.936453 TGTTACCATCACATAGCGGTTTC 59.064 43.478 0.00 0.00 32.81 2.78
2323 2421 2.038387 ACCATCACATAGCGGTTTCC 57.962 50.000 0.00 0.00 0.00 3.13
2324 2422 1.280710 ACCATCACATAGCGGTTTCCA 59.719 47.619 0.00 0.00 0.00 3.53
2325 2423 2.290641 ACCATCACATAGCGGTTTCCAA 60.291 45.455 0.00 0.00 0.00 3.53
2326 2424 2.951642 CCATCACATAGCGGTTTCCAAT 59.048 45.455 0.00 0.00 0.00 3.16
2327 2425 3.243168 CCATCACATAGCGGTTTCCAATG 60.243 47.826 0.00 0.00 0.00 2.82
2328 2426 1.742831 TCACATAGCGGTTTCCAATGC 59.257 47.619 0.00 0.00 0.00 3.56
2329 2427 1.472082 CACATAGCGGTTTCCAATGCA 59.528 47.619 0.00 0.00 0.00 3.96
2330 2428 2.099592 CACATAGCGGTTTCCAATGCAT 59.900 45.455 0.00 0.00 0.00 3.96
2331 2429 3.314913 CACATAGCGGTTTCCAATGCATA 59.685 43.478 0.00 0.00 0.00 3.14
2332 2430 3.951037 ACATAGCGGTTTCCAATGCATAA 59.049 39.130 0.00 0.00 0.00 1.90
2333 2431 4.584325 ACATAGCGGTTTCCAATGCATAAT 59.416 37.500 0.00 0.00 0.00 1.28
2334 2432 3.441496 AGCGGTTTCCAATGCATAATG 57.559 42.857 0.00 0.00 0.00 1.90
2335 2433 3.023119 AGCGGTTTCCAATGCATAATGA 58.977 40.909 0.00 0.00 0.00 2.57
2336 2434 3.067180 AGCGGTTTCCAATGCATAATGAG 59.933 43.478 0.00 0.00 0.00 2.90
2337 2435 3.181487 GCGGTTTCCAATGCATAATGAGT 60.181 43.478 0.00 0.00 0.00 3.41
2338 2436 4.601019 CGGTTTCCAATGCATAATGAGTC 58.399 43.478 0.00 0.00 0.00 3.36
2339 2437 4.336433 CGGTTTCCAATGCATAATGAGTCT 59.664 41.667 0.00 0.00 0.00 3.24
2340 2438 5.527214 CGGTTTCCAATGCATAATGAGTCTA 59.473 40.000 0.00 0.00 0.00 2.59
2341 2439 6.511767 CGGTTTCCAATGCATAATGAGTCTAC 60.512 42.308 0.00 0.00 0.00 2.59
2342 2440 6.318648 GGTTTCCAATGCATAATGAGTCTACA 59.681 38.462 0.00 0.00 0.00 2.74
2343 2441 7.148086 GGTTTCCAATGCATAATGAGTCTACAA 60.148 37.037 0.00 0.00 0.00 2.41
2344 2442 7.936496 TTCCAATGCATAATGAGTCTACAAA 57.064 32.000 0.00 0.00 0.00 2.83
2345 2443 7.558161 TCCAATGCATAATGAGTCTACAAAG 57.442 36.000 0.00 0.00 0.00 2.77
2346 2444 7.112122 TCCAATGCATAATGAGTCTACAAAGT 58.888 34.615 0.00 0.00 0.00 2.66
2347 2445 8.264347 TCCAATGCATAATGAGTCTACAAAGTA 58.736 33.333 0.00 0.00 0.00 2.24
2348 2446 8.892723 CCAATGCATAATGAGTCTACAAAGTAA 58.107 33.333 0.00 0.00 0.00 2.24
2359 2457 9.162764 TGAGTCTACAAAGTAATAAATGAAGGC 57.837 33.333 0.00 0.00 0.00 4.35
2360 2458 9.162764 GAGTCTACAAAGTAATAAATGAAGGCA 57.837 33.333 0.00 0.00 0.00 4.75
2361 2459 9.515226 AGTCTACAAAGTAATAAATGAAGGCAA 57.485 29.630 0.00 0.00 0.00 4.52
2362 2460 9.556030 GTCTACAAAGTAATAAATGAAGGCAAC 57.444 33.333 0.00 0.00 0.00 4.17
2377 2475 3.067684 GGCAACTATGTTACCACACCT 57.932 47.619 0.00 0.00 35.03 4.00
2378 2476 4.210724 GGCAACTATGTTACCACACCTA 57.789 45.455 0.00 0.00 35.03 3.08
2379 2477 4.777463 GGCAACTATGTTACCACACCTAT 58.223 43.478 0.00 0.00 35.03 2.57
2380 2478 4.574828 GGCAACTATGTTACCACACCTATG 59.425 45.833 0.00 0.00 35.03 2.23
2381 2479 5.424757 GCAACTATGTTACCACACCTATGA 58.575 41.667 0.00 0.00 35.03 2.15
2382 2480 5.293569 GCAACTATGTTACCACACCTATGAC 59.706 44.000 0.00 0.00 35.03 3.06
2383 2481 6.403049 CAACTATGTTACCACACCTATGACA 58.597 40.000 0.00 0.00 35.03 3.58
2384 2482 5.974108 ACTATGTTACCACACCTATGACAC 58.026 41.667 0.00 0.00 35.03 3.67
2385 2483 5.720041 ACTATGTTACCACACCTATGACACT 59.280 40.000 0.00 0.00 35.03 3.55
2386 2484 6.893554 ACTATGTTACCACACCTATGACACTA 59.106 38.462 0.00 0.00 35.03 2.74
2387 2485 5.395682 TGTTACCACACCTATGACACTAC 57.604 43.478 0.00 0.00 0.00 2.73
2388 2486 4.221262 TGTTACCACACCTATGACACTACC 59.779 45.833 0.00 0.00 0.00 3.18
2389 2487 2.185387 ACCACACCTATGACACTACCC 58.815 52.381 0.00 0.00 0.00 3.69
2390 2488 2.184533 CCACACCTATGACACTACCCA 58.815 52.381 0.00 0.00 0.00 4.51
2391 2489 2.093658 CCACACCTATGACACTACCCAC 60.094 54.545 0.00 0.00 0.00 4.61
2392 2490 2.832129 CACACCTATGACACTACCCACT 59.168 50.000 0.00 0.00 0.00 4.00
2393 2491 4.021229 CACACCTATGACACTACCCACTA 58.979 47.826 0.00 0.00 0.00 2.74
2394 2492 4.649674 CACACCTATGACACTACCCACTAT 59.350 45.833 0.00 0.00 0.00 2.12
2395 2493 4.649674 ACACCTATGACACTACCCACTATG 59.350 45.833 0.00 0.00 0.00 2.23
2396 2494 4.893524 CACCTATGACACTACCCACTATGA 59.106 45.833 0.00 0.00 0.00 2.15
2397 2495 5.362717 CACCTATGACACTACCCACTATGAA 59.637 44.000 0.00 0.00 0.00 2.57
2398 2496 5.598830 ACCTATGACACTACCCACTATGAAG 59.401 44.000 0.00 0.00 0.00 3.02
2399 2497 5.011125 CCTATGACACTACCCACTATGAAGG 59.989 48.000 0.00 0.00 0.00 3.46
2400 2498 3.786553 TGACACTACCCACTATGAAGGT 58.213 45.455 0.00 0.00 37.69 3.50
2401 2499 4.938028 TGACACTACCCACTATGAAGGTA 58.062 43.478 0.00 0.00 35.02 3.08
2408 2506 7.598759 CTACCCACTATGAAGGTAGTAACAT 57.401 40.000 7.19 0.00 45.39 2.71
2409 2507 8.701908 CTACCCACTATGAAGGTAGTAACATA 57.298 38.462 7.19 0.00 45.39 2.29
2410 2508 7.598759 ACCCACTATGAAGGTAGTAACATAG 57.401 40.000 0.00 0.00 44.14 2.23
2411 2509 7.359849 ACCCACTATGAAGGTAGTAACATAGA 58.640 38.462 16.37 0.00 42.41 1.98
2412 2510 7.287235 ACCCACTATGAAGGTAGTAACATAGAC 59.713 40.741 16.37 0.00 42.41 2.59
2413 2511 7.506261 CCCACTATGAAGGTAGTAACATAGACT 59.494 40.741 16.37 0.00 42.41 3.24
2414 2512 9.570468 CCACTATGAAGGTAGTAACATAGACTA 57.430 37.037 16.37 0.00 42.41 2.59
2420 2518 9.964354 TGAAGGTAGTAACATAGACTAGTAACA 57.036 33.333 0.00 0.00 30.08 2.41
2452 2550 8.558973 TGTTACTAGTCTAAGTTACTCTCCAC 57.441 38.462 0.00 0.00 31.82 4.02
2453 2551 8.381636 TGTTACTAGTCTAAGTTACTCTCCACT 58.618 37.037 0.00 0.00 31.82 4.00
2454 2552 9.883142 GTTACTAGTCTAAGTTACTCTCCACTA 57.117 37.037 0.00 0.00 0.00 2.74
2456 2554 8.967664 ACTAGTCTAAGTTACTCTCCACTATG 57.032 38.462 0.00 0.00 0.00 2.23
2457 2555 8.770322 ACTAGTCTAAGTTACTCTCCACTATGA 58.230 37.037 0.00 0.00 0.00 2.15
2458 2556 7.868906 AGTCTAAGTTACTCTCCACTATGAC 57.131 40.000 0.00 0.00 0.00 3.06
2459 2557 6.829811 AGTCTAAGTTACTCTCCACTATGACC 59.170 42.308 0.00 0.00 31.22 4.02
2460 2558 6.602406 GTCTAAGTTACTCTCCACTATGACCA 59.398 42.308 0.00 0.00 0.00 4.02
2461 2559 5.923733 AAGTTACTCTCCACTATGACCAG 57.076 43.478 0.00 0.00 0.00 4.00
2462 2560 3.702045 AGTTACTCTCCACTATGACCAGC 59.298 47.826 0.00 0.00 0.00 4.85
2463 2561 1.490574 ACTCTCCACTATGACCAGCC 58.509 55.000 0.00 0.00 0.00 4.85
2464 2562 1.007721 ACTCTCCACTATGACCAGCCT 59.992 52.381 0.00 0.00 0.00 4.58
2465 2563 2.245028 ACTCTCCACTATGACCAGCCTA 59.755 50.000 0.00 0.00 0.00 3.93
2466 2564 3.300388 CTCTCCACTATGACCAGCCTAA 58.700 50.000 0.00 0.00 0.00 2.69
2474 2572 5.237344 CACTATGACCAGCCTAAATTACAGC 59.763 44.000 0.00 0.00 0.00 4.40
2542 2640 1.309688 GGCAGGAGAGGAGAGGAGT 59.690 63.158 0.00 0.00 0.00 3.85
2543 2641 0.755327 GGCAGGAGAGGAGAGGAGTC 60.755 65.000 0.00 0.00 0.00 3.36
2544 2642 0.258774 GCAGGAGAGGAGAGGAGTCT 59.741 60.000 0.00 0.00 34.86 3.24
2545 2643 2.023788 GCAGGAGAGGAGAGGAGTCTG 61.024 61.905 0.00 0.00 30.97 3.51
2546 2644 1.284785 CAGGAGAGGAGAGGAGTCTGT 59.715 57.143 0.00 0.00 30.97 3.41
2547 2645 1.564348 AGGAGAGGAGAGGAGTCTGTC 59.436 57.143 0.00 0.00 30.97 3.51
2718 2825 1.398578 GCGACCTGCTTTCTTTTCGAC 60.399 52.381 0.00 0.00 41.73 4.20
2831 2951 9.744468 TGTGAATATTTCTCGAATCGATCTAAA 57.256 29.630 5.59 7.98 34.61 1.85
2856 2976 8.938047 AGTAATTTTACATCCGTTGTTAAACG 57.062 30.769 4.09 4.09 45.35 3.60
2871 2991 0.036388 AAACGGGCAGATGATGACGT 60.036 50.000 0.00 0.00 43.10 4.34
2873 2993 1.592669 CGGGCAGATGATGACGTCC 60.593 63.158 14.12 0.00 38.10 4.79
2874 2994 1.826024 GGGCAGATGATGACGTCCT 59.174 57.895 14.12 2.19 38.10 3.85
2875 2995 0.531532 GGGCAGATGATGACGTCCTG 60.532 60.000 14.12 13.27 38.10 3.86
2876 2996 0.461548 GGCAGATGATGACGTCCTGA 59.538 55.000 19.05 2.79 32.93 3.86
2877 2997 1.069823 GGCAGATGATGACGTCCTGAT 59.930 52.381 19.05 7.63 32.93 2.90
2878 2998 2.402305 GCAGATGATGACGTCCTGATC 58.598 52.381 19.05 15.39 32.93 2.92
2879 2999 2.659387 CAGATGATGACGTCCTGATCG 58.341 52.381 14.12 5.58 32.93 3.69
2880 3000 2.291741 CAGATGATGACGTCCTGATCGA 59.708 50.000 14.12 0.00 32.93 3.59
2881 3001 2.952310 AGATGATGACGTCCTGATCGAA 59.048 45.455 14.12 0.00 32.93 3.71
2882 3002 2.851805 TGATGACGTCCTGATCGAAG 57.148 50.000 14.12 0.00 0.00 3.79
2883 3003 2.365582 TGATGACGTCCTGATCGAAGA 58.634 47.619 14.12 0.00 45.75 2.87
2884 3004 2.356069 TGATGACGTCCTGATCGAAGAG 59.644 50.000 14.12 0.00 43.63 2.85
2885 3005 0.452184 TGACGTCCTGATCGAAGAGC 59.548 55.000 14.12 0.00 46.88 4.09
2892 3012 4.485554 GATCGAAGAGCGTGCTGT 57.514 55.556 0.00 0.00 43.63 4.40
2893 3013 2.283254 GATCGAAGAGCGTGCTGTC 58.717 57.895 0.00 0.00 43.63 3.51
2894 3014 0.456824 GATCGAAGAGCGTGCTGTCA 60.457 55.000 0.00 0.00 43.63 3.58
2895 3015 0.038251 ATCGAAGAGCGTGCTGTCAA 60.038 50.000 0.00 0.00 43.63 3.18
2896 3016 0.249280 TCGAAGAGCGTGCTGTCAAA 60.249 50.000 0.00 0.00 41.80 2.69
2897 3017 0.111089 CGAAGAGCGTGCTGTCAAAC 60.111 55.000 0.00 0.00 34.64 2.93
2898 3018 1.221414 GAAGAGCGTGCTGTCAAACT 58.779 50.000 0.00 0.00 0.00 2.66
2899 3019 1.599542 GAAGAGCGTGCTGTCAAACTT 59.400 47.619 0.00 0.00 0.00 2.66
2900 3020 0.940126 AGAGCGTGCTGTCAAACTTG 59.060 50.000 0.00 0.00 0.00 3.16
2901 3021 0.657840 GAGCGTGCTGTCAAACTTGT 59.342 50.000 0.00 0.00 0.00 3.16
2902 3022 0.657840 AGCGTGCTGTCAAACTTGTC 59.342 50.000 0.00 0.00 0.00 3.18
2903 3023 0.657840 GCGTGCTGTCAAACTTGTCT 59.342 50.000 0.00 0.00 0.00 3.41
2904 3024 1.864711 GCGTGCTGTCAAACTTGTCTA 59.135 47.619 0.00 0.00 0.00 2.59
2905 3025 2.286833 GCGTGCTGTCAAACTTGTCTAA 59.713 45.455 0.00 0.00 0.00 2.10
2906 3026 3.844943 GCGTGCTGTCAAACTTGTCTAAC 60.845 47.826 0.00 0.00 0.00 2.34
2907 3027 3.303132 CGTGCTGTCAAACTTGTCTAACC 60.303 47.826 0.00 0.00 0.00 2.85
2908 3028 3.877508 GTGCTGTCAAACTTGTCTAACCT 59.122 43.478 0.00 0.00 0.00 3.50
2909 3029 4.335594 GTGCTGTCAAACTTGTCTAACCTT 59.664 41.667 0.00 0.00 0.00 3.50
2910 3030 4.947388 TGCTGTCAAACTTGTCTAACCTTT 59.053 37.500 0.00 0.00 0.00 3.11
2911 3031 5.417580 TGCTGTCAAACTTGTCTAACCTTTT 59.582 36.000 0.00 0.00 0.00 2.27
2912 3032 6.071616 TGCTGTCAAACTTGTCTAACCTTTTT 60.072 34.615 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 48 1.463444 GTGCAATTCGTGTGTCCTACC 59.537 52.381 0.00 0.00 0.00 3.18
85 87 1.051812 AGGACCTCCTGTGAGTTGTG 58.948 55.000 0.00 0.00 46.55 3.33
150 152 7.526608 TGTCTGCCAAGAATTTTATTTAGACG 58.473 34.615 0.00 0.00 34.98 4.18
151 153 9.691362 TTTGTCTGCCAAGAATTTTATTTAGAC 57.309 29.630 0.00 0.00 33.05 2.59
232 235 5.989168 AGTAAATTATCCGCATCGACAATCA 59.011 36.000 0.00 0.00 0.00 2.57
236 239 5.113383 ACAAGTAAATTATCCGCATCGACA 58.887 37.500 0.00 0.00 0.00 4.35
274 277 2.040278 CTCAGGCCTGGGGTCTCT 59.960 66.667 32.23 0.00 34.19 3.10
277 280 0.895559 CAAAACTCAGGCCTGGGGTC 60.896 60.000 35.70 0.00 34.74 4.46
282 285 1.066002 CACACACAAAACTCAGGCCTG 59.934 52.381 27.87 27.87 0.00 4.85
283 286 1.340991 ACACACACAAAACTCAGGCCT 60.341 47.619 0.00 0.00 0.00 5.19
285 288 2.479560 GGAACACACACAAAACTCAGGC 60.480 50.000 0.00 0.00 0.00 4.85
305 319 3.326747 CCTGTCTAAAAACTCCTCGTGG 58.673 50.000 0.00 0.00 0.00 4.94
322 336 2.207501 CTTGATGCTGCCCTCCCTGT 62.208 60.000 0.00 0.00 0.00 4.00
348 362 3.470888 AATCTCCCCGCCCACTCG 61.471 66.667 0.00 0.00 0.00 4.18
356 370 1.077716 GGTTCACCCAATCTCCCCG 60.078 63.158 0.00 0.00 0.00 5.73
362 380 5.077564 GGGGATTATTAGGTTCACCCAATC 58.922 45.833 0.00 0.00 37.78 2.67
387 405 5.357314 GCCTCCCTCTTCCTAATTTGTTTAC 59.643 44.000 0.00 0.00 0.00 2.01
388 406 5.014755 TGCCTCCCTCTTCCTAATTTGTTTA 59.985 40.000 0.00 0.00 0.00 2.01
395 413 2.708325 GTGATGCCTCCCTCTTCCTAAT 59.292 50.000 0.00 0.00 0.00 1.73
451 478 3.636313 TACCCTCTTGGCGCGTTCG 62.636 63.158 8.43 0.00 37.83 3.95
452 479 1.810030 CTACCCTCTTGGCGCGTTC 60.810 63.158 8.43 0.58 37.83 3.95
453 480 2.264794 CTACCCTCTTGGCGCGTT 59.735 61.111 8.43 0.00 37.83 4.84
454 481 3.771160 CCTACCCTCTTGGCGCGT 61.771 66.667 8.43 0.00 37.83 6.01
568 595 1.604593 AATGACACAGCCAGCCACC 60.605 57.895 0.00 0.00 0.00 4.61
602 629 3.915437 ATTACACGCACAAAAAGAGGG 57.085 42.857 0.00 0.00 0.00 4.30
676 713 2.074948 CCCTCTCCCCCAGGTCATG 61.075 68.421 0.00 0.00 0.00 3.07
677 714 2.263099 CTCCCTCTCCCCCAGGTCAT 62.263 65.000 0.00 0.00 0.00 3.06
678 715 2.874245 TCCCTCTCCCCCAGGTCA 60.874 66.667 0.00 0.00 0.00 4.02
679 716 2.041405 CTCCCTCTCCCCCAGGTC 60.041 72.222 0.00 0.00 0.00 3.85
680 717 2.540910 TCTCCCTCTCCCCCAGGT 60.541 66.667 0.00 0.00 0.00 4.00
681 718 2.285180 CTCTCCCTCTCCCCCAGG 59.715 72.222 0.00 0.00 0.00 4.45
682 719 2.285180 CCTCTCCCTCTCCCCCAG 59.715 72.222 0.00 0.00 0.00 4.45
683 720 3.368501 CCCTCTCCCTCTCCCCCA 61.369 72.222 0.00 0.00 0.00 4.96
684 721 3.036959 TCCCTCTCCCTCTCCCCC 61.037 72.222 0.00 0.00 0.00 5.40
685 722 2.015726 TCTCCCTCTCCCTCTCCCC 61.016 68.421 0.00 0.00 0.00 4.81
686 723 1.541672 CTCTCCCTCTCCCTCTCCC 59.458 68.421 0.00 0.00 0.00 4.30
687 724 1.541672 CCTCTCCCTCTCCCTCTCC 59.458 68.421 0.00 0.00 0.00 3.71
688 725 0.996762 TCCCTCTCCCTCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
689 726 0.998945 CTCCCTCTCCCTCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
690 727 1.541672 CTCCCTCTCCCTCTCCCTC 59.458 68.421 0.00 0.00 0.00 4.30
691 728 2.018086 CCTCCCTCTCCCTCTCCCT 61.018 68.421 0.00 0.00 0.00 4.20
692 729 2.612251 CCTCCCTCTCCCTCTCCC 59.388 72.222 0.00 0.00 0.00 4.30
693 730 2.612251 CCCTCCCTCTCCCTCTCC 59.388 72.222 0.00 0.00 0.00 3.71
694 731 2.612251 CCCCTCCCTCTCCCTCTC 59.388 72.222 0.00 0.00 0.00 3.20
695 732 3.039526 CCCCCTCCCTCTCCCTCT 61.040 72.222 0.00 0.00 0.00 3.69
696 733 3.036959 TCCCCCTCCCTCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
697 734 3.039526 CTCCCCCTCCCTCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
727 780 2.934263 AGGTTAGGCTGGTACTGGTA 57.066 50.000 0.00 0.00 0.00 3.25
728 781 2.040342 AAGGTTAGGCTGGTACTGGT 57.960 50.000 0.00 0.00 0.00 4.00
729 782 3.434940 AAAAGGTTAGGCTGGTACTGG 57.565 47.619 0.00 0.00 0.00 4.00
821 880 2.680352 TGGGTGAGTCGGAGGCTC 60.680 66.667 5.78 5.78 40.46 4.70
830 889 4.677151 GGGGAGGGGTGGGTGAGT 62.677 72.222 0.00 0.00 0.00 3.41
862 921 2.092524 GCTGCTGTTGTTGTTGTTGTTG 59.907 45.455 0.00 0.00 0.00 3.33
863 922 2.288702 TGCTGCTGTTGTTGTTGTTGTT 60.289 40.909 0.00 0.00 0.00 2.83
864 923 1.271934 TGCTGCTGTTGTTGTTGTTGT 59.728 42.857 0.00 0.00 0.00 3.32
865 924 1.655099 GTGCTGCTGTTGTTGTTGTTG 59.345 47.619 0.00 0.00 0.00 3.33
866 925 1.404047 GGTGCTGCTGTTGTTGTTGTT 60.404 47.619 0.00 0.00 0.00 2.83
867 926 0.173255 GGTGCTGCTGTTGTTGTTGT 59.827 50.000 0.00 0.00 0.00 3.32
879 938 1.518903 GGAGTGGAAGTTGGTGCTGC 61.519 60.000 0.00 0.00 0.00 5.25
908 967 1.383386 GGTTGGGTTGGGTTGGGTT 60.383 57.895 0.00 0.00 0.00 4.11
952 1012 1.296715 GCCGATGACACACCTTCCT 59.703 57.895 0.00 0.00 0.00 3.36
953 1013 2.100631 CGCCGATGACACACCTTCC 61.101 63.158 0.00 0.00 0.00 3.46
954 1014 2.100631 CCGCCGATGACACACCTTC 61.101 63.158 0.00 0.00 0.00 3.46
955 1015 2.047274 CCGCCGATGACACACCTT 60.047 61.111 0.00 0.00 0.00 3.50
956 1016 4.760047 GCCGCCGATGACACACCT 62.760 66.667 0.00 0.00 0.00 4.00
982 1042 4.082463 CCCCATCTCGCTATCTCTTTAGAC 60.082 50.000 0.00 0.00 33.57 2.59
996 1059 3.917760 GGCGACCTCCCCATCTCG 61.918 72.222 0.00 0.00 0.00 4.04
1164 1227 0.824759 GGAGGTAGTTGATCCAGCGT 59.175 55.000 0.00 0.00 33.08 5.07
1274 1337 9.083422 TGGAGCTATATATGCTATGGATTAGAC 57.917 37.037 8.92 0.00 41.30 2.59
1275 1338 9.660544 TTGGAGCTATATATGCTATGGATTAGA 57.339 33.333 8.92 0.00 41.30 2.10
1278 1341 8.942033 TCATTGGAGCTATATATGCTATGGATT 58.058 33.333 8.92 0.00 41.30 3.01
1306 1373 1.135257 AGCAGAACAGAGGATCGTTCG 60.135 52.381 5.81 3.53 45.96 3.95
1325 1392 2.048444 ACAAGGCCATGCATGTAGAG 57.952 50.000 24.58 10.82 30.57 2.43
1345 1412 6.176183 ACAATACTGTCAGAGCTATGCTTTT 58.824 36.000 6.91 0.00 39.88 2.27
1349 1416 5.814705 AGAAACAATACTGTCAGAGCTATGC 59.185 40.000 6.91 0.00 33.45 3.14
1356 1423 6.019075 CGTCAAACAGAAACAATACTGTCAGA 60.019 38.462 6.91 0.00 44.94 3.27
1395 1462 2.045280 CAGTCTCCCGGCTATCAGG 58.955 63.158 0.00 0.00 0.00 3.86
1548 1615 3.793144 CTCTGCGCCGCCTCAAAC 61.793 66.667 6.63 0.00 0.00 2.93
1939 2026 1.938596 AGAGGGAGAGGAGCAGGGA 60.939 63.158 0.00 0.00 0.00 4.20
1940 2027 1.457455 GAGAGGGAGAGGAGCAGGG 60.457 68.421 0.00 0.00 0.00 4.45
1941 2028 0.468029 GAGAGAGGGAGAGGAGCAGG 60.468 65.000 0.00 0.00 0.00 4.85
1942 2029 0.468029 GGAGAGAGGGAGAGGAGCAG 60.468 65.000 0.00 0.00 0.00 4.24
1943 2030 0.923729 AGGAGAGAGGGAGAGGAGCA 60.924 60.000 0.00 0.00 0.00 4.26
1944 2031 0.468029 CAGGAGAGAGGGAGAGGAGC 60.468 65.000 0.00 0.00 0.00 4.70
1945 2032 0.926293 ACAGGAGAGAGGGAGAGGAG 59.074 60.000 0.00 0.00 0.00 3.69
1946 2033 0.628522 CACAGGAGAGAGGGAGAGGA 59.371 60.000 0.00 0.00 0.00 3.71
1947 2034 0.628522 TCACAGGAGAGAGGGAGAGG 59.371 60.000 0.00 0.00 0.00 3.69
1948 2035 1.284785 AGTCACAGGAGAGAGGGAGAG 59.715 57.143 0.00 0.00 0.00 3.20
1949 2036 1.283613 GAGTCACAGGAGAGAGGGAGA 59.716 57.143 0.00 0.00 0.00 3.71
1950 2037 1.284785 AGAGTCACAGGAGAGAGGGAG 59.715 57.143 0.00 0.00 0.00 4.30
1951 2038 1.377690 AGAGTCACAGGAGAGAGGGA 58.622 55.000 0.00 0.00 0.00 4.20
1952 2039 1.824230 CAAGAGTCACAGGAGAGAGGG 59.176 57.143 0.00 0.00 0.00 4.30
2000 2087 5.164954 GTCTCTCTTTCACTCGCTGTAATT 58.835 41.667 0.00 0.00 0.00 1.40
2097 2192 3.130633 GGACAAACAAAATGGAGCAACC 58.869 45.455 0.00 0.00 39.54 3.77
2146 2244 6.128336 GCACCAGAGTATTATTGCTCATGATC 60.128 42.308 0.00 0.00 37.08 2.92
2191 2289 1.789523 TACTCCCACTATGACCAGCC 58.210 55.000 0.00 0.00 0.00 4.85
2192 2290 2.500098 TGTTACTCCCACTATGACCAGC 59.500 50.000 0.00 0.00 0.00 4.85
2193 2291 6.098409 ACTTATGTTACTCCCACTATGACCAG 59.902 42.308 0.00 0.00 0.00 4.00
2194 2292 5.962031 ACTTATGTTACTCCCACTATGACCA 59.038 40.000 0.00 0.00 0.00 4.02
2195 2293 6.481434 ACTTATGTTACTCCCACTATGACC 57.519 41.667 0.00 0.00 0.00 4.02
2196 2294 8.235359 ACTACTTATGTTACTCCCACTATGAC 57.765 38.462 0.00 0.00 0.00 3.06
2197 2295 9.925545 TTACTACTTATGTTACTCCCACTATGA 57.074 33.333 0.00 0.00 0.00 2.15
2198 2296 9.962783 GTTACTACTTATGTTACTCCCACTATG 57.037 37.037 0.00 0.00 0.00 2.23
2199 2297 9.705103 TGTTACTACTTATGTTACTCCCACTAT 57.295 33.333 0.00 0.00 0.00 2.12
2200 2298 9.705103 ATGTTACTACTTATGTTACTCCCACTA 57.295 33.333 0.00 0.00 0.00 2.74
2201 2299 8.605325 ATGTTACTACTTATGTTACTCCCACT 57.395 34.615 0.00 0.00 0.00 4.00
2202 2300 9.962783 CTATGTTACTACTTATGTTACTCCCAC 57.037 37.037 0.00 0.00 0.00 4.61
2203 2301 9.925545 TCTATGTTACTACTTATGTTACTCCCA 57.074 33.333 0.00 0.00 0.00 4.37
2208 2306 9.976511 TGGCATCTATGTTACTACTTATGTTAC 57.023 33.333 0.00 0.00 0.00 2.50
2209 2307 9.976511 GTGGCATCTATGTTACTACTTATGTTA 57.023 33.333 0.00 0.00 0.00 2.41
2210 2308 8.482943 TGTGGCATCTATGTTACTACTTATGTT 58.517 33.333 0.00 0.00 0.00 2.71
2211 2309 8.018537 TGTGGCATCTATGTTACTACTTATGT 57.981 34.615 0.00 0.00 0.00 2.29
2215 2313 7.657761 GCTTATGTGGCATCTATGTTACTACTT 59.342 37.037 0.00 0.00 0.00 2.24
2216 2314 7.155328 GCTTATGTGGCATCTATGTTACTACT 58.845 38.462 0.00 0.00 0.00 2.57
2217 2315 6.929049 TGCTTATGTGGCATCTATGTTACTAC 59.071 38.462 0.00 0.00 34.56 2.73
2218 2316 7.061566 TGCTTATGTGGCATCTATGTTACTA 57.938 36.000 0.00 0.00 34.56 1.82
2219 2317 5.928976 TGCTTATGTGGCATCTATGTTACT 58.071 37.500 0.00 0.00 34.56 2.24
2220 2318 6.618287 TTGCTTATGTGGCATCTATGTTAC 57.382 37.500 0.00 0.00 39.54 2.50
2221 2319 7.637631 TTTTGCTTATGTGGCATCTATGTTA 57.362 32.000 0.00 0.00 39.54 2.41
2222 2320 6.528537 TTTTGCTTATGTGGCATCTATGTT 57.471 33.333 0.00 0.00 39.54 2.71
2223 2321 6.720112 ATTTTGCTTATGTGGCATCTATGT 57.280 33.333 0.00 0.00 39.54 2.29
2224 2322 7.204604 TCAATTTTGCTTATGTGGCATCTATG 58.795 34.615 0.00 0.00 39.54 2.23
2225 2323 7.350744 TCAATTTTGCTTATGTGGCATCTAT 57.649 32.000 0.00 0.00 39.54 1.98
2226 2324 6.772360 TCAATTTTGCTTATGTGGCATCTA 57.228 33.333 0.00 0.00 39.54 1.98
2227 2325 5.664294 TCAATTTTGCTTATGTGGCATCT 57.336 34.783 0.00 0.00 39.54 2.90
2228 2326 6.044046 TCATCAATTTTGCTTATGTGGCATC 58.956 36.000 0.00 0.00 39.54 3.91
2229 2327 5.979993 TCATCAATTTTGCTTATGTGGCAT 58.020 33.333 0.00 0.00 39.54 4.40
2230 2328 5.402997 TCATCAATTTTGCTTATGTGGCA 57.597 34.783 0.00 0.00 37.97 4.92
2231 2329 5.813672 ACATCATCAATTTTGCTTATGTGGC 59.186 36.000 0.00 0.00 0.00 5.01
2232 2330 6.256975 CCACATCATCAATTTTGCTTATGTGG 59.743 38.462 18.59 18.59 44.59 4.17
2233 2331 6.237996 GCCACATCATCAATTTTGCTTATGTG 60.238 38.462 11.65 11.65 38.83 3.21
2234 2332 5.813672 GCCACATCATCAATTTTGCTTATGT 59.186 36.000 0.00 0.00 0.00 2.29
2235 2333 5.813157 TGCCACATCATCAATTTTGCTTATG 59.187 36.000 0.00 0.00 0.00 1.90
2236 2334 5.979993 TGCCACATCATCAATTTTGCTTAT 58.020 33.333 0.00 0.00 0.00 1.73
2237 2335 5.402997 TGCCACATCATCAATTTTGCTTA 57.597 34.783 0.00 0.00 0.00 3.09
2238 2336 4.274602 TGCCACATCATCAATTTTGCTT 57.725 36.364 0.00 0.00 0.00 3.91
2239 2337 3.965379 TGCCACATCATCAATTTTGCT 57.035 38.095 0.00 0.00 0.00 3.91
2240 2338 3.998341 ACTTGCCACATCATCAATTTTGC 59.002 39.130 0.00 0.00 0.00 3.68
2241 2339 6.392354 ACTACTTGCCACATCATCAATTTTG 58.608 36.000 0.00 0.00 0.00 2.44
2242 2340 6.594788 ACTACTTGCCACATCATCAATTTT 57.405 33.333 0.00 0.00 0.00 1.82
2243 2341 6.594788 AACTACTTGCCACATCATCAATTT 57.405 33.333 0.00 0.00 0.00 1.82
2244 2342 7.701539 TTAACTACTTGCCACATCATCAATT 57.298 32.000 0.00 0.00 0.00 2.32
2245 2343 7.557358 TCATTAACTACTTGCCACATCATCAAT 59.443 33.333 0.00 0.00 0.00 2.57
2246 2344 6.883756 TCATTAACTACTTGCCACATCATCAA 59.116 34.615 0.00 0.00 0.00 2.57
2247 2345 6.413892 TCATTAACTACTTGCCACATCATCA 58.586 36.000 0.00 0.00 0.00 3.07
2248 2346 6.017605 CCTCATTAACTACTTGCCACATCATC 60.018 42.308 0.00 0.00 0.00 2.92
2249 2347 5.824624 CCTCATTAACTACTTGCCACATCAT 59.175 40.000 0.00 0.00 0.00 2.45
2250 2348 5.045942 TCCTCATTAACTACTTGCCACATCA 60.046 40.000 0.00 0.00 0.00 3.07
2251 2349 5.428253 TCCTCATTAACTACTTGCCACATC 58.572 41.667 0.00 0.00 0.00 3.06
2252 2350 5.189736 TCTCCTCATTAACTACTTGCCACAT 59.810 40.000 0.00 0.00 0.00 3.21
2253 2351 4.530553 TCTCCTCATTAACTACTTGCCACA 59.469 41.667 0.00 0.00 0.00 4.17
2254 2352 5.086104 TCTCCTCATTAACTACTTGCCAC 57.914 43.478 0.00 0.00 0.00 5.01
2255 2353 5.023452 TCTCTCCTCATTAACTACTTGCCA 58.977 41.667 0.00 0.00 0.00 4.92
2256 2354 5.452636 CCTCTCTCCTCATTAACTACTTGCC 60.453 48.000 0.00 0.00 0.00 4.52
2257 2355 5.596845 CCTCTCTCCTCATTAACTACTTGC 58.403 45.833 0.00 0.00 0.00 4.01
2258 2356 5.127845 TGCCTCTCTCCTCATTAACTACTTG 59.872 44.000 0.00 0.00 0.00 3.16
2259 2357 5.273208 TGCCTCTCTCCTCATTAACTACTT 58.727 41.667 0.00 0.00 0.00 2.24
2260 2358 4.873010 TGCCTCTCTCCTCATTAACTACT 58.127 43.478 0.00 0.00 0.00 2.57
2261 2359 5.599999 TTGCCTCTCTCCTCATTAACTAC 57.400 43.478 0.00 0.00 0.00 2.73
2262 2360 6.814954 ATTTGCCTCTCTCCTCATTAACTA 57.185 37.500 0.00 0.00 0.00 2.24
2263 2361 5.707066 ATTTGCCTCTCTCCTCATTAACT 57.293 39.130 0.00 0.00 0.00 2.24
2264 2362 6.821388 TCTATTTGCCTCTCTCCTCATTAAC 58.179 40.000 0.00 0.00 0.00 2.01
2265 2363 6.613271 ACTCTATTTGCCTCTCTCCTCATTAA 59.387 38.462 0.00 0.00 0.00 1.40
2266 2364 6.139671 ACTCTATTTGCCTCTCTCCTCATTA 58.860 40.000 0.00 0.00 0.00 1.90
2267 2365 4.968080 ACTCTATTTGCCTCTCTCCTCATT 59.032 41.667 0.00 0.00 0.00 2.57
2268 2366 4.555689 ACTCTATTTGCCTCTCTCCTCAT 58.444 43.478 0.00 0.00 0.00 2.90
2269 2367 3.987745 ACTCTATTTGCCTCTCTCCTCA 58.012 45.455 0.00 0.00 0.00 3.86
2270 2368 5.361285 TGTTACTCTATTTGCCTCTCTCCTC 59.639 44.000 0.00 0.00 0.00 3.71
2271 2369 5.273208 TGTTACTCTATTTGCCTCTCTCCT 58.727 41.667 0.00 0.00 0.00 3.69
2272 2370 5.599999 TGTTACTCTATTTGCCTCTCTCC 57.400 43.478 0.00 0.00 0.00 3.71
2301 2399 3.311596 GGAAACCGCTATGTGATGGTAAC 59.688 47.826 0.00 0.00 33.45 2.50
2302 2400 3.055021 TGGAAACCGCTATGTGATGGTAA 60.055 43.478 0.00 0.00 33.45 2.85
2303 2401 2.502130 TGGAAACCGCTATGTGATGGTA 59.498 45.455 0.00 0.00 33.45 3.25
2304 2402 1.280710 TGGAAACCGCTATGTGATGGT 59.719 47.619 0.00 0.00 35.90 3.55
2305 2403 2.036958 TGGAAACCGCTATGTGATGG 57.963 50.000 0.00 0.00 0.00 3.51
2306 2404 3.793129 GCATTGGAAACCGCTATGTGATG 60.793 47.826 0.00 0.00 0.00 3.07
2307 2405 2.358898 GCATTGGAAACCGCTATGTGAT 59.641 45.455 0.00 0.00 0.00 3.06
2308 2406 1.742831 GCATTGGAAACCGCTATGTGA 59.257 47.619 0.00 0.00 0.00 3.58
2309 2407 1.472082 TGCATTGGAAACCGCTATGTG 59.528 47.619 0.00 0.00 0.00 3.21
2310 2408 1.832883 TGCATTGGAAACCGCTATGT 58.167 45.000 0.00 0.00 0.00 2.29
2311 2409 4.566545 TTATGCATTGGAAACCGCTATG 57.433 40.909 3.54 0.00 0.00 2.23
2312 2410 4.826733 TCATTATGCATTGGAAACCGCTAT 59.173 37.500 3.54 0.00 0.00 2.97
2313 2411 4.203226 TCATTATGCATTGGAAACCGCTA 58.797 39.130 3.54 0.00 0.00 4.26
2314 2412 3.023119 TCATTATGCATTGGAAACCGCT 58.977 40.909 3.54 0.00 0.00 5.52
2315 2413 3.181487 ACTCATTATGCATTGGAAACCGC 60.181 43.478 3.54 0.00 0.00 5.68
2316 2414 4.336433 AGACTCATTATGCATTGGAAACCG 59.664 41.667 3.54 0.00 0.00 4.44
2317 2415 5.841957 AGACTCATTATGCATTGGAAACC 57.158 39.130 3.54 0.00 0.00 3.27
2318 2416 7.320443 TGTAGACTCATTATGCATTGGAAAC 57.680 36.000 3.54 0.00 0.00 2.78
2319 2417 7.936496 TTGTAGACTCATTATGCATTGGAAA 57.064 32.000 3.54 0.00 0.00 3.13
2320 2418 7.611467 ACTTTGTAGACTCATTATGCATTGGAA 59.389 33.333 3.54 0.00 0.00 3.53
2321 2419 7.112122 ACTTTGTAGACTCATTATGCATTGGA 58.888 34.615 3.54 0.00 0.00 3.53
2322 2420 7.325660 ACTTTGTAGACTCATTATGCATTGG 57.674 36.000 3.54 0.00 0.00 3.16
2333 2431 9.162764 GCCTTCATTTATTACTTTGTAGACTCA 57.837 33.333 0.00 0.00 0.00 3.41
2334 2432 9.162764 TGCCTTCATTTATTACTTTGTAGACTC 57.837 33.333 0.00 0.00 0.00 3.36
2335 2433 9.515226 TTGCCTTCATTTATTACTTTGTAGACT 57.485 29.630 0.00 0.00 0.00 3.24
2336 2434 9.556030 GTTGCCTTCATTTATTACTTTGTAGAC 57.444 33.333 0.00 0.00 0.00 2.59
2337 2435 9.515226 AGTTGCCTTCATTTATTACTTTGTAGA 57.485 29.630 0.00 0.00 0.00 2.59
2345 2443 9.946165 GGTAACATAGTTGCCTTCATTTATTAC 57.054 33.333 9.36 0.00 0.00 1.89
2346 2444 9.688091 TGGTAACATAGTTGCCTTCATTTATTA 57.312 29.630 16.08 0.00 46.17 0.98
2347 2445 8.588290 TGGTAACATAGTTGCCTTCATTTATT 57.412 30.769 16.08 0.00 46.17 1.40
2366 2464 4.382362 GGGTAGTGTCATAGGTGTGGTAAC 60.382 50.000 0.00 0.00 0.00 2.50
2367 2465 3.770933 GGGTAGTGTCATAGGTGTGGTAA 59.229 47.826 0.00 0.00 0.00 2.85
2368 2466 3.245694 TGGGTAGTGTCATAGGTGTGGTA 60.246 47.826 0.00 0.00 0.00 3.25
2369 2467 2.185387 GGGTAGTGTCATAGGTGTGGT 58.815 52.381 0.00 0.00 0.00 4.16
2370 2468 2.093658 GTGGGTAGTGTCATAGGTGTGG 60.094 54.545 0.00 0.00 0.00 4.17
2371 2469 2.832129 AGTGGGTAGTGTCATAGGTGTG 59.168 50.000 0.00 0.00 0.00 3.82
2372 2470 3.185880 AGTGGGTAGTGTCATAGGTGT 57.814 47.619 0.00 0.00 0.00 4.16
2373 2471 4.893524 TCATAGTGGGTAGTGTCATAGGTG 59.106 45.833 0.00 0.00 0.00 4.00
2374 2472 5.138758 TCATAGTGGGTAGTGTCATAGGT 57.861 43.478 0.00 0.00 0.00 3.08
2375 2473 5.011125 CCTTCATAGTGGGTAGTGTCATAGG 59.989 48.000 0.00 0.00 0.00 2.57
2376 2474 5.598830 ACCTTCATAGTGGGTAGTGTCATAG 59.401 44.000 0.00 0.00 0.00 2.23
2377 2475 5.525484 ACCTTCATAGTGGGTAGTGTCATA 58.475 41.667 0.00 0.00 0.00 2.15
2378 2476 4.362677 ACCTTCATAGTGGGTAGTGTCAT 58.637 43.478 0.00 0.00 0.00 3.06
2379 2477 3.786553 ACCTTCATAGTGGGTAGTGTCA 58.213 45.455 0.00 0.00 0.00 3.58
2380 2478 5.517322 CTACCTTCATAGTGGGTAGTGTC 57.483 47.826 9.46 0.00 44.30 3.67
2385 2483 8.505246 TCTATGTTACTACCTTCATAGTGGGTA 58.495 37.037 0.00 0.00 40.01 3.69
2386 2484 7.287235 GTCTATGTTACTACCTTCATAGTGGGT 59.713 40.741 0.00 0.00 40.01 4.51
2387 2485 7.506261 AGTCTATGTTACTACCTTCATAGTGGG 59.494 40.741 0.00 0.00 40.01 4.61
2388 2486 8.466617 AGTCTATGTTACTACCTTCATAGTGG 57.533 38.462 0.00 0.00 40.01 4.00
2394 2492 9.964354 TGTTACTAGTCTATGTTACTACCTTCA 57.036 33.333 0.00 0.00 0.00 3.02
2426 2524 9.176460 GTGGAGAGTAACTTAGACTAGTAACAT 57.824 37.037 0.00 0.00 0.00 2.71
2427 2525 8.381636 AGTGGAGAGTAACTTAGACTAGTAACA 58.618 37.037 0.00 0.00 0.00 2.41
2428 2526 8.791327 AGTGGAGAGTAACTTAGACTAGTAAC 57.209 38.462 0.00 0.00 0.00 2.50
2431 2529 8.770322 TCATAGTGGAGAGTAACTTAGACTAGT 58.230 37.037 0.00 0.00 0.00 2.57
2432 2530 9.048446 GTCATAGTGGAGAGTAACTTAGACTAG 57.952 40.741 0.00 0.00 31.58 2.57
2433 2531 7.992033 GGTCATAGTGGAGAGTAACTTAGACTA 59.008 40.741 0.00 0.00 33.27 2.59
2434 2532 6.829811 GGTCATAGTGGAGAGTAACTTAGACT 59.170 42.308 0.00 0.00 33.27 3.24
2435 2533 6.602406 TGGTCATAGTGGAGAGTAACTTAGAC 59.398 42.308 0.00 0.00 32.58 2.59
2436 2534 6.728411 TGGTCATAGTGGAGAGTAACTTAGA 58.272 40.000 0.00 0.00 0.00 2.10
2437 2535 6.460399 GCTGGTCATAGTGGAGAGTAACTTAG 60.460 46.154 0.00 0.00 0.00 2.18
2438 2536 5.360144 GCTGGTCATAGTGGAGAGTAACTTA 59.640 44.000 0.00 0.00 0.00 2.24
2439 2537 4.160626 GCTGGTCATAGTGGAGAGTAACTT 59.839 45.833 0.00 0.00 0.00 2.66
2440 2538 3.702045 GCTGGTCATAGTGGAGAGTAACT 59.298 47.826 0.00 0.00 0.00 2.24
2441 2539 3.181474 GGCTGGTCATAGTGGAGAGTAAC 60.181 52.174 0.00 0.00 0.00 2.50
2442 2540 3.031736 GGCTGGTCATAGTGGAGAGTAA 58.968 50.000 0.00 0.00 0.00 2.24
2443 2541 2.245028 AGGCTGGTCATAGTGGAGAGTA 59.755 50.000 0.00 0.00 0.00 2.59
2444 2542 1.007721 AGGCTGGTCATAGTGGAGAGT 59.992 52.381 0.00 0.00 0.00 3.24
2445 2543 1.786937 AGGCTGGTCATAGTGGAGAG 58.213 55.000 0.00 0.00 0.00 3.20
2446 2544 3.398318 TTAGGCTGGTCATAGTGGAGA 57.602 47.619 0.00 0.00 0.00 3.71
2447 2545 4.696479 ATTTAGGCTGGTCATAGTGGAG 57.304 45.455 0.00 0.00 0.00 3.86
2448 2546 5.427157 TGTAATTTAGGCTGGTCATAGTGGA 59.573 40.000 0.00 0.00 0.00 4.02
2449 2547 5.680619 TGTAATTTAGGCTGGTCATAGTGG 58.319 41.667 0.00 0.00 0.00 4.00
2450 2548 5.237344 GCTGTAATTTAGGCTGGTCATAGTG 59.763 44.000 0.00 0.00 0.00 2.74
2451 2549 5.104527 TGCTGTAATTTAGGCTGGTCATAGT 60.105 40.000 0.00 0.00 0.00 2.12
2452 2550 5.368145 TGCTGTAATTTAGGCTGGTCATAG 58.632 41.667 0.00 0.00 0.00 2.23
2453 2551 5.104527 ACTGCTGTAATTTAGGCTGGTCATA 60.105 40.000 0.00 0.00 0.00 2.15
2454 2552 4.202441 CTGCTGTAATTTAGGCTGGTCAT 58.798 43.478 0.00 0.00 0.00 3.06
2455 2553 3.009033 ACTGCTGTAATTTAGGCTGGTCA 59.991 43.478 0.00 0.00 0.00 4.02
2456 2554 3.375299 CACTGCTGTAATTTAGGCTGGTC 59.625 47.826 0.00 0.00 0.00 4.02
2457 2555 3.347216 CACTGCTGTAATTTAGGCTGGT 58.653 45.455 0.00 4.99 0.00 4.00
2458 2556 2.098117 GCACTGCTGTAATTTAGGCTGG 59.902 50.000 0.00 4.59 0.00 4.85
2459 2557 3.012518 AGCACTGCTGTAATTTAGGCTG 58.987 45.455 1.67 0.00 37.57 4.85
2460 2558 3.356529 AGCACTGCTGTAATTTAGGCT 57.643 42.857 1.67 0.00 37.57 4.58
2461 2559 4.082787 TGAAAGCACTGCTGTAATTTAGGC 60.083 41.667 3.73 0.00 39.62 3.93
2462 2560 5.627499 TGAAAGCACTGCTGTAATTTAGG 57.373 39.130 3.73 0.00 39.62 2.69
2463 2561 6.902341 TCTTGAAAGCACTGCTGTAATTTAG 58.098 36.000 3.73 0.00 39.62 1.85
2464 2562 6.875948 TCTTGAAAGCACTGCTGTAATTTA 57.124 33.333 3.73 0.00 39.62 1.40
2465 2563 5.772825 TCTTGAAAGCACTGCTGTAATTT 57.227 34.783 3.73 0.61 39.62 1.82
2466 2564 5.772825 TTCTTGAAAGCACTGCTGTAATT 57.227 34.783 3.73 0.00 39.62 1.40
2523 2621 1.309347 CTCCTCTCCTCTCCTGCCA 59.691 63.158 0.00 0.00 0.00 4.92
2545 2643 1.211457 ACTGAATCTGGCCATCTGGAC 59.789 52.381 5.51 0.00 45.93 4.02
2546 2644 1.211212 CACTGAATCTGGCCATCTGGA 59.789 52.381 5.51 0.00 37.39 3.86
2547 2645 1.064906 ACACTGAATCTGGCCATCTGG 60.065 52.381 5.51 0.00 38.53 3.86
2549 2647 1.681166 GCACACTGAATCTGGCCATCT 60.681 52.381 5.51 0.00 0.00 2.90
2550 2648 0.737219 GCACACTGAATCTGGCCATC 59.263 55.000 5.51 0.67 0.00 3.51
2611 2711 2.271497 CTCAGGGCCTGCTTCTGG 59.729 66.667 29.02 9.88 0.00 3.86
2648 2754 1.678101 GTGGATGCAGGATTAGGCAAC 59.322 52.381 0.00 0.00 44.20 4.17
2718 2825 0.466189 ATGTAGCATCCCAAAGGGCG 60.466 55.000 0.00 0.00 43.94 6.13
2779 2890 7.754625 TGGACTAAAATAGGTTATGCGTTTTC 58.245 34.615 0.00 0.00 0.00 2.29
2782 2893 6.826741 ACATGGACTAAAATAGGTTATGCGTT 59.173 34.615 0.00 0.00 0.00 4.84
2783 2894 6.260050 CACATGGACTAAAATAGGTTATGCGT 59.740 38.462 0.00 0.00 0.00 5.24
2784 2895 6.481976 TCACATGGACTAAAATAGGTTATGCG 59.518 38.462 0.00 0.00 0.00 4.73
2856 2976 0.531532 CAGGACGTCATCATCTGCCC 60.532 60.000 18.91 0.00 0.00 5.36
2858 2978 2.402305 GATCAGGACGTCATCATCTGC 58.598 52.381 18.91 0.00 0.00 4.26
2859 2979 2.291741 TCGATCAGGACGTCATCATCTG 59.708 50.000 18.91 14.49 0.00 2.90
2871 2991 1.139734 GCACGCTCTTCGATCAGGA 59.860 57.895 0.00 0.00 41.67 3.86
2873 2993 0.457509 ACAGCACGCTCTTCGATCAG 60.458 55.000 0.00 0.00 41.67 2.90
2874 2994 0.456824 GACAGCACGCTCTTCGATCA 60.457 55.000 0.00 0.00 41.67 2.92
2875 2995 0.456824 TGACAGCACGCTCTTCGATC 60.457 55.000 0.00 0.00 41.67 3.69
2876 2996 0.038251 TTGACAGCACGCTCTTCGAT 60.038 50.000 0.00 0.00 41.67 3.59
2877 2997 0.249280 TTTGACAGCACGCTCTTCGA 60.249 50.000 0.00 0.00 41.67 3.71
2878 2998 0.111089 GTTTGACAGCACGCTCTTCG 60.111 55.000 0.00 0.00 45.38 3.79
2879 2999 1.221414 AGTTTGACAGCACGCTCTTC 58.779 50.000 0.00 0.00 0.00 2.87
2880 3000 1.331756 CAAGTTTGACAGCACGCTCTT 59.668 47.619 0.00 0.00 0.00 2.85
2881 3001 0.940126 CAAGTTTGACAGCACGCTCT 59.060 50.000 0.00 0.00 0.00 4.09
2882 3002 0.657840 ACAAGTTTGACAGCACGCTC 59.342 50.000 0.00 0.00 0.00 5.03
2883 3003 0.657840 GACAAGTTTGACAGCACGCT 59.342 50.000 0.00 0.00 0.00 5.07
2884 3004 0.657840 AGACAAGTTTGACAGCACGC 59.342 50.000 0.00 0.00 0.00 5.34
2885 3005 3.303132 GGTTAGACAAGTTTGACAGCACG 60.303 47.826 0.00 0.00 0.00 5.34
2886 3006 3.877508 AGGTTAGACAAGTTTGACAGCAC 59.122 43.478 0.00 0.00 0.00 4.40
2887 3007 4.150897 AGGTTAGACAAGTTTGACAGCA 57.849 40.909 0.00 0.00 0.00 4.41
2888 3008 5.500645 AAAGGTTAGACAAGTTTGACAGC 57.499 39.130 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.