>input_sequence_65480
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----------------------ATGGGGAGGTCGCCGTGCTGCGAGAAGGCGCACACCAACAAGGGCGCCTGGACCAAGG
AGGAGGACGACCGGCTCACCGCCTACATCAAGGCGCACGGCGAGGGCTGCTGGCGCTCCCTGCCCAAGGCCGCGGGGCTG
CTCCGCTGCGGCAAGAGCTGCCGCCTACGCTGGATCAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCAGCGACGA
GGAGGACGAGCTCATCATCAAGCTCCACAGCCTCCTGGGCAACAAGTACGTCCATCGTCTA----ATCCATAGCATATAT
AGCTCCAATGAACGAACGATCCTCTGTTCTGCTCTACATGCATGGCCTTGTAAAAGCATAGCTCTGACAGTATTGTTTCT
GTTTGACGAACGCAGATGGTCCCTGATAGCCGGGAGACTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACA
CGCACATCAGGAGGAAGCTCACGAGCCGGGGGATCGACCCGGTGACCCACCGGGCGATCAACAGCGACCACGCCGCGTCC
AACATCACCATATCGTTTGAGGCGGCGCAGAGGGACGACAAGGGCGCCGTGTTCCGGCGAGACGCCGAGCCCACCAAGGT
AGCGGCAGCGGCAGCGGCGATCACCCACGTCGACCACCATCACCGTAGCAACCCCCACCACCAGATGGAGTGGGGCCAGG
GGAAGGCGCTCAAGTGCCCGGACCTGAACCTGGACCTCTGCATCAGCCCCCCGTCCCACGAGGACCCCATGGTGGACACC
AAGCCCGTGGTGAAGAGGGAGGC---------------CGTCGTGGGCCTCTGCTTCAGCTGCAGCATGGGGCTCCCCAG
GAGCGCGGACTGCAAGTGCAGCAGCTTCATGGGGCTCCGGACCGCCATGCTCGACTTCAGAAGCATCGAGATGAAATGA-
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>chr5B_1_TraesCS5B01G330100
GTGTTGGAGAATCAAAACAGCCCCCC-ATAGTCCATAGACGACATCAGGTAGGACACACGAATTGCACTGCATCTGGGTC
ACAACTCACAACTCACAGGAGGTCCTAGAAAATGGCTCGGGGAATAGTCTCCAACGTGGCACATATTCTTTCGTCTAAAT
AAAATTCTTGGCAGACAAATCATCATTGAGTTTGTGTCTTACAAAAAGATTGGGA-TTCTGTATCCGATCTCGGTGATTG
TCGATGCGGATAATTTACTTGTAGATTGAATGGGTTAGAGACCCCAGGCCTGAGT-----------TTTGTGTGTGTTCC
ACGAGGAGTTTTTAGACAGGGAGGGCAGCATCAAGGGAAAGCGAGTGGGC----GGGGAGATTGGGTGAACCTAATAATC
CCCCGTAAACAAATTAGGAAGAGGGAGGCATCACGGGTGG--ATGCGGTTAGTTAGCTGTTAAAAC-------CGAACGA
ACGCGCCAAGAGGGTAGGCAGGGGGAGCTGGAGCTTACCTCACTTTACACCTACCTGTGAGGCTTGTGAATCGGGCAAGT
AGGCGGGCAAATGGAGCCTGTGTGTCCTGTGCCCGGTGGCTGGCTGTGTCATTGTTGCCTTTCTATCTCCCTCTTTT---
-------TGTGCGTGTAATAAACTGGTAAACAAACCGGTGGGGTGATGAGTTGAGGTGAGGTGAGGTGAGGTCATGACCT
GGGGGAGAGGGAGAGGGAGAG----------------GGAGGGGGAGGCCTACCAGTGCTACCAGTACCAGCCTAACCTT
TTTCCCACCAACTCAGCCTCTAGAAGACCTTCTTCCCCGAT------CCAGTCAAGTGCAGTGCCGCCTATAAAGATCCG
AGCCTCCGACTCACCCACCCCTCCCCGTAGCACTAGCCCCCAACAACAACAACAACAGCAGCACCAACTTCCACTCCTGC
AAACCCAACCCAACCCAACCCAACCCACCACCGAGCACAAGAAAA-GGAGAAGGAAGGTGTGTCATCGGCGGCGGCAGAC
CGTC---TAAAGAGATAGCGAGATGGGGAGGTCGCCGTGCTGCGAGAAGGCGCACACCAACAAGGGCGCCTGGACCAAGG
AGGAGGACGACCGGCTCACCGCCTACATCAAGGCGCACGGCGAGGGCTGCTGGCGCTCCCTGCCCAAGGCCGCGGGGCTG
CTCCGCTGCGGCAAGAGCTGCCGCCTACGCTGGATCAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCAGCGACGA
GGAGGACGAGCTCATCATCAAGCTCCACAGCCTCCTGGGCAACAAGTACGTCCATCGTCTA----ATCCATAGCATATAT
AGCTCCAATGAACGAACGATCCTCTGTTCTGCTCTACATGCATGGCCTTGTAAAAGCATAGCTCTGACAGTATTGTTTCT
GTTTGACGAACGCAGATGGTCCCTGATAGCCGGGAGACTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACA
CGCACATCAGGAGGAAGCTCACGAGCCGGGGGATCGACCCGGTGACCCACCGGGCGATCAACAGCGACCACGCCGCGTCC
AACATCACCATATCGTTTGAGGCGGCGCAGAGGGACGACAAGGGCGCCGTGTTCCGGCGAGACGCCGAGCCCACCAAGGT
AGCGGCAGCGGCAGCGGCGATCACCCACGTCGACCACCATCACCGTAGCAACCCCCACCACCAGATGGAGTGGGGCCAGG
GGAAGGCGCTCAAGTGCCCGGACCTGAACCTGGACCTCTGCATCAGCCCCCCGTCCCACGAGGACCCCATGGTGGACACC
AAGCCCGTGGTGAAGAGGGAGGC---------------CGTCGTGGGCCTCTGCTTCAGCTGCAGCATGGGGCTCCCCAG
GAGCGCGGACTGCAAGTGCAGCAGCTTCATGGGGCTCCGGACCGCCATGCTCGACTTCAGAAGCATCGAGATGAAATGAG
CAGAGC-----AGAGCACCCCCTCCTCCCTGCTCCTCTCCCTCTCTCCTGTGACTCTTGGATATTGGTTTAGCCTGTAGG
TGAAAAAATTACAGCGAGTGAAAGAGAGACAAGAAGAAGGGTGAGGATGATCTTG--------TGTTTCGCCAAGATCAT
CTCCCTCTTCTCCTCCCCCCGCTGCTCTCTTGGTTGCTCCATTTTGTTTGTCCCGTTGTAAAAAAAA---TTACCGTTTG
ACTGATCATGAGCAATAATACTCTGGTGCTGGCTGGCTCACTGTATAAGGCTGGTCATAGTGGGAGTAACATAAGTAGTA
ACATAGATGCCACATAAGCAAAATTGATGATGTGGCAAGTAGTTAATGAGGAGAGAGGCAAATAGAGTAACATAATATGT
TACCATCACATAGCGGTTTCCAATGCATAATGAGTCTACAAAGTAATAAATGAAGGCAACTATGTTACCACACCTATGAC
ACTACCCACTATGAAGGTAGTAACATAGACTAGTAACATATGTATGTTACTAGTCTAAGTTACTCTCCACTATGACCAGC
CTAAATTACAGCAGTGCTTTCAAGAAAGTGTAATAATAATATGAAGGTGAGAATTCTTTTTGGCAGGAGAGGAGAGGAGT
CTGTCCAG--ATGGCCAGATTCAGTGTGCCCCGTGTGGGCGTTGATCTCGAGACCGGGGCACTGGACCGGCCAGAAGCAG
GC------CCTGAGCGCGTGGGCGCATGTGAGCGTTGCCTAATCCTGCATCCACGGCAAAGGCAGCGGCTCGTGACACGC
TTTGCGACCTGCTTT-CTTTTCGACGCC----CTTTGGGATGCTACATACATACATACATACATACATAACCCTTTTTTT
TTTCCTTGCGAAAACGCATAACCTATTTTAGTCCATGTGAATATTTCTCGAATCGATC---------TAAAGTAATTTTA
CATCCGTTGTTAAACGGGCAGATGATGACGTCCTGATCGAAGAGCGTGCTGTCAAACTTGTCTAACCTTTTTTCCCA
>chr5A_1
GTGTTGGAGAATCAAAACAGCCCCCG--TAGTCCATAGACGACATCATGTAGGACACACGAATTGCACTGCCCCTGGGTC
ACAACTGACAGGA-----GAGGTCCTAGAAAATGGCTCGGGGAATAGTCTCCAACGTGGCACATATTCTTCA-TCTAAAT
AAAATTCTTGGCAGACAAATTATCATTGAGTTTGTGTCTTACAGAAAGATTGAGG-TTCTATATCCGATCTCGGCGATCG
TCGATGCGGATAATTTACTTGTAGACTGAACGGGTTCGACACCCTGGCCCTGGATTGAATGGGTTATTTGCTTGTGTTGC
ACGAGTAGTTTTTAGGCAGGGAGGGCAGCATCAAGGGAAAGAGAGTGGGAGGGAGGGGAAATTGGGTGGACCTAATAATC
CCCCACAAACAACTTAGGAAGAGGGAGGCATCACGGGTGG--ATGCGGTTAGTTAGCTGTTAAAAC-------CGAA---
-GGCGCCAAGAGGGTAGGCAGGGGGAGCT-------ACCTCACTTTACACCTACCTGTGAGGCTTGTGAATCGGGCAAGT
AGGCAGGCAAATGGAGCCTGTGTGTCCTGTGCCCTGTGGCTGGCTGTGTCGTTGTTGCCTTTCTATCCTCCTCTTTGTGT
GTGTGTGTGTGTGTGTAATAAACTGGTAAACAAACCGGTGGGGTGCTGAGTTGAGGTGAGGTCATGACCTGT--------
--------------GGGAGAG----------------GGAGGGGGAGGCCTACCAGTGC---CCGTACCAGCCTAACCTT
TTTCCCACCAACTCAGCCTCTAGAAGACCTTCTTCCCCGATCCAGTGCCAGTCAAGTGCAGTGCCGCCTATAAAGATCC-
AGCCTCCGGGTCACCCACCCCTCCCCGTAGCACTAGCCCC------CAACAACAACAACAGCACCAACTTCCACTCCTGC
AAACCCGACCCAACCCAACCCAACCCACCACCGAGCACAAGAAAA-GGAGA----------GTCATCGGCGGCGGCAGAC
CATC---TACAGAGATAGTGAGATGGGGAGGTCGCCGTGCTGCGAGAAGGCGCACACCAACAAGGGCGCCTGGACCAAGG
AGGAGGACGACCGGCTCACCGCCTACATCAAGGCGCACGGCGAGGGCTGCTGGCGCTCCCTGCCCAAGGCCGCGGGGTTG
CTCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATCAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCAGCGATGA
GGAGGACGAGCTCATCATCAAGCTCCACAGCCTCCTGGGCAACAAGTACGTTCATC--------TATCCATACCATATAT
AGCTCCAATGAATGAACGATCCTCTGTTT-----TACATGCATGGCCTTGTGAAAACATAGCGCTGACAGTATTGTTTCT
GTTTGACGAACGCAGATGGTCTCTGATAGCCGGGAGACTCCCAGGGAGGACGGACAACGAGATCAAGAACTACTGGAACA
CGCACATCAGGAGGAAGCTCACGAGCCGGGGGATCGACCCGGTGACCCACCGCGCGATCAACAGCGACCACGCCGCGTCC
AACATCACCATATCCTTCGAGACGGCGCAGAGGGACGACAAGGGCGCCGTGTTCCGGCGAGGCGCCGAGCCCACCAAGGT
AGCGGCAGCGGCAGCGGCGATCACCCACGTGGACCACCATCACCATCACCGTAGCAACCCCCAGATGGACTGGGGCCAGG
GGAAGCCACTCAAGTGCCCGGACCTGAACCTGGACCTGTGCATCAGCCCCCCGTCCCACGAGGACCCCATGGTGGACACC
AAGCCCGTGGTGAAGAGGGAGGCCGGCGTCGGCGTCGGCGTCGTGGGCCTGTGCTTCAGCTGCAGCATGGGGCTCCCCAG
GAGCGTGGAGTGCAAGTGCAGCAGCTTCATGGGGCTCCGGACCGCCATGCTCGACTTCAGAAGCATCGAGATGAAATGAG
CAGAGCAGAGCAGAGCACCCCCTCCCT------------CCTCTCTCCTGTGA--CTTGGATATTGGTTTAGCCTGTAGG
TGAAAA---TACAGCGAGTGAAAGAGATGCAAGAAGAAAGAGC--GATGATCTTGTGGTGCCCTGTTTCGCCAGGATCAT
CTCCTTTCCTTCTTTATGCC------CTCTC-GTTGCTCCATTTTGTTTGTCCGGTTGTAAAAAAAAAAATTACCGTTTG
ACTAATCATGGGCAATAATACTCTGGTGCTGGGTGGCTCACTGTATAA--------------------------------
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----ATTACAGGAGTGCTTTCAAGAAAGTGCAATAGTAATATGAAGGTGGCAATTCCTTT-GGC-----AGGAGAGGAGA
GCAGACCAGAATGGCCAGATTCAGTGTGCCCCGTGTGGGCGTTGATCTCGAGACCGGGGCACTGAACCGGGCAGAGGCAG
ACCCTGAGCCTGAGCGCGTGGGCGCATGTGAGCATTGCCTAATCCTGCATCCACGGCAAAGGCAGCGACTCGTGACACGC
TTTGCGACCTGCTTT-CTTTTCGATGCC----CTTTGGGGCGGC-------TACATACATACATACATAAACCTTTTTTT
CTCTTGCCAAAAG-----------------GTCCAGGTGAATATTTTTCGAGTCGATC---------TAA-GTAATTTTA
CATCCGTCGTTAAACAGATAGATGATGACGCCT--------------------------------------------
>chr5D_3
--GTTGGAGTATCAAAACAGCCCCCCCATAGTCCATAGACGACATCATGTAGGACACACGAATTGCACTGCATC------
----------ACTCACAGGAGGTCCTAGAAAATGGCTCGGGGAGTAGTGTCCAACGCGGCACATATTCTTTA-TCTAAAT
AAAATTCTTGGCAGACAAATTATCATTGAGTTTGTGTCATACAAAAAGATTGGGGATTCTATATCCGATCTCGGCAATCG
TCGATGCGGATAATTTACTTGTAGACTGAACGGGTTCGGCACCCTGGCCCTGGATTGAATGGGTTATTTGCTTGTGTTGC
ACGAGGAGTTTTTAGGCAGGGAGGGCAGCATCAAGGGAAAGAGACT----GGGACGGGAAATTGGGTGAACCTAATAATC
CCCCACAAACAACTTAGGAAGAGGGAGGCATCACGGGTGGATATGCGGTTAGTTAGCTGTTAAACCGAACGAACGAA---
-CGCGCCAAGAGGGTAGGCAGGGGGAGGGGGAGCTTACCTCACTTTACACCTGCCTGTGAGGCTTGTGAATCGGGCAAGT
AGGCAGGCAAATTGAGCCTGT-TGTCCTGTGCCCTGTGGCTGGCTGTGTCATTGTTGCCTTTCTATCTTCCTCTTTTTGT
G----------CGTGTAATAAACTGGTAAACAAACCGGTGGGGTGATGAGTTGAGGTGAGGTCATGGCCTGG--------
--------------GGGAGAGTCCGGGAGGGGGAGGGGGAGGGGGAGGCCTACCAGTAG---CAGTACCAGCCTAACCTT
TTTCCCACCAACTCAGCCTCTAGAAGACCTTCTTCCCCGAT------CCAGTCAAGTGCAGTGCCGCCTATAAAGATCC-
AGCCAAAGGCTCACCCACCCCTCCCCGTAGCACTAGCCCC------CAACAACAACAACAGCACCAACTTCCACTCCTGC
AA-----ACCCAACCCAACCCAACCCACCACCGAGCACAAGAAAAAGGAGA----------GCCATCGGCGGCGGCAGAC
CATCGTCTAAAGAGATAGTGAGATGGGGAGGTCGCCGTGCTGCGAGAAGGCGCACACCAACAAGGGCGCCTGGACCAAGG
AGGAGGACGACCGGCTCACCGCCTACATCAAGGCGCACGGCGAGGGCTGCTGGCGCTCCCTGCCCAAGGCCGCGGGGCTG
CTCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATCAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCAGCGACGA
GGAGGACGAGCTCATCATCAAGCTCCACAGCCTCCTGGGCAACAAGTACGTCCATCCATCGTCGTATCCATAGCATATAT
AGCACCGATGGATGAACCATCCTCTGTTCTGTTCCACATGCATGGCCTTGTGAAAACATAGCGCTGACAGTATTGTTTCT
GTTTGACGAACGCAGATGGTCTCTGATAGCAGGGAGACTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACA
CGCACATCAGGAGGAAGCTGACGAGCCGGGGGATCGACCCGGTGACCCACCGGGCGATCAACAGCGACCACGCCGCGTCC
AACATCACCATATCCTTCGAGGCGGCGCAGAGGGACGACAAGGGCGCCGTGTTCCGGCGAGACGCCGAGCCCACCAAG--
----GCAGCGGCAGCGGCGATCACCCACGTCGACCACCATCACCGTAGCAACCCCCACCACCAGATGGACTGGGGCCAGG
GGAAGCCGCTCAAGTGCCCGGACCTGAACCTGGACCTGTGCATCAGCCCCCCGTCCCACGAGGACCCCATGGTGGACACC
AAGCCCGTCGTGAAGAGGGAGGCCGGCGCCGGCGTCGGCGTCGTGGGCCTCTGCTTCAGCTGCAGCATGGGGCTCCCCAG
GAGCACGGAGTGCAAGTGCAGCAGCTTCATGGGGCTCCGGACCGCCATGCTCGACTTCAGAAGCATCGAGATGAAATGAG
CAGAGC-----AGAGCACCCCCTCCCT------------CCTTTCTCCTGTGACTCTTGGATATTGGTTTAGCCTGTAGG
TGAAAA-ATTACAGCGAGTGAAAGAGAGACAAGAAGAAGGGTGAGGATGATCTTG--------TGTTTCGCCAAGGTCAT
CTTCCTCTTCTCCTCCCCCCGCTGCTCTCTT-GTTGCTCCATTTTGTTTGTCCCGTTGTAAAAAAAAGG--TACCGTTTG
ACTAATCATGAGCAATAATACTCTGGTGCTGGCTGGATCACTGTATAA--------------------------------
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----ATTACAGTAGTGCTTTCAAGAAAGTGTAATAGTAATATGAAGGTGAGAATTCTTTT-GGCAGGAGAGGAGAGGAGA
GCAGACCAGA-TGGGCAGATTCAGTGTG-CCCGTGTGGGCGCTGATCTCGAGACCGGGGCACTGAACCGGGCAGAGGCAG
ACCCTGAGCCTGAGCGCGTGGGCGCATGTGAGCATTGCCTAATCCTGCATCCACGGCAAAGGCAGCGGCTCGTGACACGC
TTTGCGACCTGCTTTTCTTTTCGATGCCCAAACTTTGGGGTGGC-------TACATACACACATA-----ACCCTTTCTT
TTCTCGCGAAAAT--GCATAACCTATTTTAGTCCATGTGAATATTTTTCGAATCGAAACCGCAGTCTTAA-GTAATTTTA
CATCCGTTGTTAAAC--------------------------------------------------------------
>SNPs
-----------------------------------------------S--------------------------------
------S----------------------------------------------------------------SS-------
--------------------S---------------------------------S-----S-------------S---S-
-------------------------S----S-----S--S----SS-S----SS----------------SS------S-
---------------S-------------------------S-------S---------S--------------------
----SS------S----------------------------------------------------------------SSS
S-------------------------------------------------------------------------------
----S-----------------------------S---------------------------------S-----------
--------------------------------------------------------------S-S-SSSS--SSSSSSSS
SSSSSSSSSSSSSS---------------------------------------------SSS------------------
-------------------------------------------------------------------------------S
--------S-------------------------------SSSSSS-----------S----------------------
------S--------------------------------------------SSSSSSSSSS-------------------
-S----------------S-------------------------------------------------------------
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--------------------------S-----------------------------------------------------
--------------------------------------------------------SSSSS-------------------
------------S------------------S-------------------S---S------S-----------------
---------------------S----------------------------------------------------------
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--------------S--S--------------------------------------------------------------
---------------------------------------------------------------------S----------
-----S-------------------------------S------------------------------------------
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---------S----------------------------------------------------------------------
-------------------------SSSSSSSSSSSSSS-----------------------------------------
------S-------------------------------------------------------------------------
-------------------------------S------------------------------------------------
---S--------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS-------S-----------------------S------------------------S------------------S
SSSSS-SS--------------------------------------------------------S-----S----S----
S--------------------------------S----------------------------------------------
------------------------S--------------S--SSSSSSSSS-------------------S---------
--SS-SS-SS--SSS-------------------------------S-----------------------S---------
---------------S-SS-----------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_967
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-------------------------------------------------------------------CTTCCACTCCTGC
AAACCCA-------------------------------------------------------------------------
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>reverse_2996
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-----------------------------------ATCGAAGAGCGTGCTGTCAA----------------------
