Multiple sequence alignment - TraesCS5B01G322400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G322400 chr5B 100.000 2778 0 0 1 2778 507162381 507165158 0.000000e+00 5131
1 TraesCS5B01G322400 chr5A 91.859 1953 99 31 9 1928 534457367 534459292 0.000000e+00 2671
2 TraesCS5B01G322400 chr5A 92.934 467 17 6 1949 2409 534459447 534459903 0.000000e+00 665
3 TraesCS5B01G322400 chr5A 95.418 371 16 1 2409 2778 534459957 534460327 8.570000e-165 590
4 TraesCS5B01G322400 chr5A 84.848 132 10 3 1807 1928 534367163 534367294 1.040000e-24 124
5 TraesCS5B01G322400 chr5D 91.508 1366 79 17 572 1935 421167297 421165967 0.000000e+00 1845
6 TraesCS5B01G322400 chr5D 88.702 593 34 13 1 566 421168056 421167470 0.000000e+00 693
7 TraesCS5B01G322400 chr5D 96.477 369 10 3 2413 2778 421165686 421165318 8.510000e-170 606
8 TraesCS5B01G322400 chr5D 91.081 370 14 4 2413 2778 421145528 421145174 1.500000e-132 483
9 TraesCS5B01G322400 chr5D 94.017 117 7 0 1949 2065 421165819 421165703 7.910000e-41 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G322400 chr5B 507162381 507165158 2777 False 5131.000000 5131 100.000000 1 2778 1 chr5B.!!$F1 2777
1 TraesCS5B01G322400 chr5A 534457367 534460327 2960 False 1308.666667 2671 93.403667 9 2778 3 chr5A.!!$F2 2769
2 TraesCS5B01G322400 chr5D 421165318 421168056 2738 True 830.500000 1845 92.676000 1 2778 4 chr5D.!!$R2 2777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 460 0.239347 CTGTTTTCCTCTTGCTGCGG 59.761 55.0 0.0 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2103 2448 0.112218 TGTGGAACATGGGAGTTGGG 59.888 55.0 0.0 0.0 45.67 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 1.544691 CGAAGGAGAAGAAAGGACGGA 59.455 52.381 0.00 0.00 0.00 4.69
84 85 0.537653 GAAGAAAGGACGGAGAGGGG 59.462 60.000 0.00 0.00 0.00 4.79
145 173 2.747686 GGGAACGGAGCTGGTCAA 59.252 61.111 9.30 0.00 0.00 3.18
238 266 1.003233 GCCAGAAGAAGCCCTCGTT 60.003 57.895 0.00 0.00 0.00 3.85
248 276 0.331954 AGCCCTCGTTCTACAGGAGA 59.668 55.000 0.00 0.00 39.43 3.71
310 338 0.470833 GAGGAGGAGCCCATAGAGCA 60.471 60.000 0.00 0.00 37.37 4.26
419 448 4.058817 AGTGTCAGTCGAATCTGTTTTCC 58.941 43.478 3.27 0.00 36.85 3.13
430 460 0.239347 CTGTTTTCCTCTTGCTGCGG 59.761 55.000 0.00 0.00 0.00 5.69
434 464 0.392998 TTTCCTCTTGCTGCGGATCC 60.393 55.000 0.00 0.00 28.50 3.36
445 475 2.291365 CTGCGGATCCAATGATGAACA 58.709 47.619 13.41 0.00 0.00 3.18
448 478 2.923121 CGGATCCAATGATGAACAGGT 58.077 47.619 13.41 0.00 0.00 4.00
451 481 3.624777 GATCCAATGATGAACAGGTGGT 58.375 45.455 0.00 0.00 38.22 4.16
504 534 3.562557 GGATTTTGTTGTCCTACACACGT 59.437 43.478 0.00 0.00 33.41 4.49
507 537 3.462483 TTGTTGTCCTACACACGTCAT 57.538 42.857 0.00 0.00 33.41 3.06
591 788 3.260740 CTGTCAGAGACCTCTTTGCATC 58.739 50.000 0.00 0.00 37.98 3.91
593 790 3.262660 TGTCAGAGACCTCTTTGCATCAT 59.737 43.478 0.00 0.00 37.98 2.45
606 806 7.041508 CCTCTTTGCATCATGTAGGAGAATTAC 60.042 40.741 8.59 0.00 0.00 1.89
616 816 1.923148 AGGAGAATTACCCAACCCAGG 59.077 52.381 0.00 0.00 0.00 4.45
621 821 0.261696 ATTACCCAACCCAGGCCATC 59.738 55.000 5.01 0.00 0.00 3.51
622 822 1.869824 TTACCCAACCCAGGCCATCC 61.870 60.000 5.01 0.00 0.00 3.51
637 841 2.224426 GCCATCCACATACCCGTCAATA 60.224 50.000 0.00 0.00 0.00 1.90
640 844 4.282449 CCATCCACATACCCGTCAATACTA 59.718 45.833 0.00 0.00 0.00 1.82
642 846 4.795469 TCCACATACCCGTCAATACTAGA 58.205 43.478 0.00 0.00 0.00 2.43
645 849 6.015688 TCCACATACCCGTCAATACTAGAATC 60.016 42.308 0.00 0.00 0.00 2.52
646 850 6.157211 CACATACCCGTCAATACTAGAATCC 58.843 44.000 0.00 0.00 0.00 3.01
650 854 3.552273 CCCGTCAATACTAGAATCCACGG 60.552 52.174 15.72 15.72 44.13 4.94
695 900 7.918033 CACCAATATGTTACTCTGTAGACTCTG 59.082 40.741 0.00 0.00 0.00 3.35
737 942 1.128692 GCAAGTAGGATTGCGTGTGTC 59.871 52.381 0.00 0.00 45.43 3.67
803 1009 9.635520 CTTATCACAATTTTTCTTCATTCAGCT 57.364 29.630 0.00 0.00 0.00 4.24
844 1050 0.679640 GCATTCGAACCCATCCCACA 60.680 55.000 0.00 0.00 0.00 4.17
845 1051 1.382522 CATTCGAACCCATCCCACAG 58.617 55.000 0.00 0.00 0.00 3.66
854 1060 4.157120 ATCCCACAGTACGCCGCC 62.157 66.667 0.00 0.00 0.00 6.13
891 1097 3.568007 GCAGATCTTCTACATCCGAGTCT 59.432 47.826 0.00 0.00 0.00 3.24
900 1106 0.515127 CATCCGAGTCTCCGAGATCG 59.485 60.000 16.78 16.78 39.44 3.69
971 1177 2.099921 CAGGGACTCCGTAGATCACAAG 59.900 54.545 0.00 0.00 34.60 3.16
974 1180 1.132643 GACTCCGTAGATCACAAGCGT 59.867 52.381 0.00 0.00 0.00 5.07
996 1202 2.693069 ACTTCCTCTTCAATCGCACTG 58.307 47.619 0.00 0.00 0.00 3.66
997 1203 1.396301 CTTCCTCTTCAATCGCACTGC 59.604 52.381 0.00 0.00 0.00 4.40
1021 1227 0.541764 GATTGCCAAACCCTCACCCA 60.542 55.000 0.00 0.00 0.00 4.51
1054 1261 4.649692 CACCATCTATCTAAGCATGCCTT 58.350 43.478 15.66 10.65 37.57 4.35
1111 1318 3.667497 TCTGCTATGTGCTATACTGCC 57.333 47.619 0.00 0.00 43.37 4.85
1121 1328 1.269309 GCTATACTGCCAGACTGTCGG 60.269 57.143 0.00 12.35 0.00 4.79
1179 1386 4.402155 GCAGGATCCATGGTTGATGTTAAA 59.598 41.667 15.82 0.00 0.00 1.52
1180 1387 5.069516 GCAGGATCCATGGTTGATGTTAAAT 59.930 40.000 15.82 0.00 0.00 1.40
1219 1426 2.160615 CGTGTTAATTGACCCGATTGCA 59.839 45.455 0.00 0.00 0.00 4.08
1329 1536 6.096001 GCTTTTCATTCTGATGAGGTGGTATT 59.904 38.462 0.00 0.00 42.90 1.89
1337 1544 3.196901 TGATGAGGTGGTATTTACACGCT 59.803 43.478 0.00 0.00 39.69 5.07
1811 2020 1.990327 AGGGTGTCGGGGATAGTTTTT 59.010 47.619 0.00 0.00 0.00 1.94
1885 2094 0.107116 ACCGGTGGTGTTTTGTAGCA 60.107 50.000 6.12 0.00 32.98 3.49
1928 2137 2.936498 CCCAGTTGTTGAGCTTATACCG 59.064 50.000 0.00 0.00 0.00 4.02
1931 2140 3.370978 CAGTTGTTGAGCTTATACCGGTG 59.629 47.826 19.93 0.10 0.00 4.94
1933 2142 3.241067 TGTTGAGCTTATACCGGTGTC 57.759 47.619 19.93 0.00 0.00 3.67
1935 2144 4.018490 TGTTGAGCTTATACCGGTGTCTA 58.982 43.478 19.93 3.07 0.00 2.59
1936 2145 4.463539 TGTTGAGCTTATACCGGTGTCTAA 59.536 41.667 19.93 11.25 0.00 2.10
1937 2146 4.913335 TGAGCTTATACCGGTGTCTAAG 57.087 45.455 19.93 20.34 35.40 2.18
1939 2148 2.391879 GCTTATACCGGTGTCTAAGCG 58.608 52.381 27.76 12.22 43.11 4.68
1944 2153 2.571757 CGGTGTCTAAGCGGCTCA 59.428 61.111 1.45 0.00 45.98 4.26
1946 2155 1.890894 GGTGTCTAAGCGGCTCAGA 59.109 57.895 1.45 0.00 0.00 3.27
1951 2294 0.461548 TCTAAGCGGCTCAGATGGTG 59.538 55.000 1.45 0.00 0.00 4.17
1967 2310 6.777580 TCAGATGGTGTCTAATGCAGTATCTA 59.222 38.462 0.00 0.00 34.69 1.98
2002 2345 1.593551 CCGTGTTTGCGTGTTAGTGTG 60.594 52.381 0.00 0.00 0.00 3.82
2061 2404 5.854866 CAGCACAGATGTAACTGAAACAATG 59.145 40.000 8.71 0.00 40.63 2.82
2101 2446 6.241207 TCAAATCTCGTGATTCTTTTCCAC 57.759 37.500 12.73 0.00 41.62 4.02
2102 2447 5.997746 TCAAATCTCGTGATTCTTTTCCACT 59.002 36.000 12.73 0.00 41.62 4.00
2103 2448 6.147821 TCAAATCTCGTGATTCTTTTCCACTC 59.852 38.462 12.73 0.00 41.62 3.51
2104 2449 3.926616 TCTCGTGATTCTTTTCCACTCC 58.073 45.455 0.00 0.00 0.00 3.85
2105 2450 3.003480 CTCGTGATTCTTTTCCACTCCC 58.997 50.000 0.00 0.00 0.00 4.30
2106 2451 2.370519 TCGTGATTCTTTTCCACTCCCA 59.629 45.455 0.00 0.00 0.00 4.37
2107 2452 3.146066 CGTGATTCTTTTCCACTCCCAA 58.854 45.455 0.00 0.00 0.00 4.12
2188 2533 4.192317 GAGGGCACTGATTCGATAAAAGT 58.808 43.478 0.00 0.00 0.00 2.66
2190 2535 5.741011 AGGGCACTGATTCGATAAAAGTAA 58.259 37.500 0.00 0.00 0.00 2.24
2194 2539 7.281484 GGCACTGATTCGATAAAAGTAATACG 58.719 38.462 0.00 0.00 0.00 3.06
2217 2562 1.336148 ACATTGCAAGATTGGTGTGCG 60.336 47.619 4.94 0.00 41.27 5.34
2218 2563 0.961019 ATTGCAAGATTGGTGTGCGT 59.039 45.000 4.94 0.00 41.27 5.24
2219 2564 0.310543 TTGCAAGATTGGTGTGCGTC 59.689 50.000 0.00 0.00 41.27 5.19
2220 2565 1.210155 GCAAGATTGGTGTGCGTCC 59.790 57.895 0.00 0.00 0.00 4.79
2231 2576 2.106534 TGCGTCCGTTTTCACCGA 59.893 55.556 0.00 0.00 0.00 4.69
2357 2706 2.359214 CTCGCATACCTTCTAGTGCTGA 59.641 50.000 0.07 0.00 35.52 4.26
2363 2712 2.175202 ACCTTCTAGTGCTGACTCAGG 58.825 52.381 8.17 0.00 33.15 3.86
2401 2750 8.959548 ACAGCATGATAATGAGTTTAATGACAA 58.040 29.630 0.00 0.00 39.69 3.18
2482 2886 3.383620 TGCCATGGTTTCACATTTCAC 57.616 42.857 14.67 0.00 0.00 3.18
2498 2902 7.278646 TCACATTTCACTTCAGCTGTATGTATC 59.721 37.037 14.67 0.00 0.00 2.24
2523 2927 5.363562 TGATTGCTTACCATCTCTGACAT 57.636 39.130 0.00 0.00 0.00 3.06
2531 2935 2.283298 CCATCTCTGACATGGTTTCCG 58.717 52.381 3.98 0.00 36.74 4.30
2560 2964 5.295152 GCCCAAAATTTCCAGATCATCATC 58.705 41.667 0.00 0.00 0.00 2.92
2576 2981 4.472470 TCATCATCTTGTTCCCTGAGTCAT 59.528 41.667 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 2.050918 CCCCTTCATCTCCTAGGGTTC 58.949 57.143 9.46 0.00 46.01 3.62
131 159 1.227853 GGTGTTGACCAGCTCCGTT 60.228 57.895 0.00 0.00 42.59 4.44
159 187 3.193469 TTGGGTTTTCGCCGGCCTA 62.193 57.895 23.46 6.42 0.00 3.93
168 196 2.622962 CGGTCGCCCTTGGGTTTTC 61.623 63.158 7.61 0.00 0.00 2.29
170 198 4.653888 CCGGTCGCCCTTGGGTTT 62.654 66.667 7.61 0.00 0.00 3.27
238 266 1.584175 GCGATCGTCTCTCCTGTAGA 58.416 55.000 17.81 0.00 0.00 2.59
248 276 3.518998 CGGTCTGGGCGATCGTCT 61.519 66.667 20.54 0.00 41.30 4.18
310 338 0.476771 GATCTCGTCCTCCTCCCTCT 59.523 60.000 0.00 0.00 0.00 3.69
419 448 0.661552 CATTGGATCCGCAGCAAGAG 59.338 55.000 7.39 0.00 0.00 2.85
430 460 3.624777 ACCACCTGTTCATCATTGGATC 58.375 45.455 0.00 0.00 34.80 3.36
434 464 2.698803 TCGACCACCTGTTCATCATTG 58.301 47.619 0.00 0.00 0.00 2.82
531 561 9.781633 AGGAAAACAAAATTCATCATCATTTGA 57.218 25.926 3.81 0.00 39.12 2.69
569 766 2.042464 TGCAAAGAGGTCTCTGACAGT 58.958 47.619 1.59 0.00 40.36 3.55
591 788 4.080015 TGGGTTGGGTAATTCTCCTACATG 60.080 45.833 11.45 0.00 31.93 3.21
593 790 3.521937 CTGGGTTGGGTAATTCTCCTACA 59.478 47.826 11.45 0.00 31.93 2.74
606 806 3.671410 TGGATGGCCTGGGTTGGG 61.671 66.667 3.32 0.00 34.31 4.12
616 816 0.107410 TTGACGGGTATGTGGATGGC 60.107 55.000 0.00 0.00 0.00 4.40
621 821 5.524971 TTCTAGTATTGACGGGTATGTGG 57.475 43.478 0.00 0.00 0.00 4.17
622 822 6.157211 GGATTCTAGTATTGACGGGTATGTG 58.843 44.000 0.00 0.00 0.00 3.21
637 841 2.632377 CATGTTGCCGTGGATTCTAGT 58.368 47.619 0.00 0.00 0.00 2.57
646 850 0.959867 TCACCATCCATGTTGCCGTG 60.960 55.000 0.00 0.00 0.00 4.94
650 854 1.617850 TGGTTTCACCATCCATGTTGC 59.382 47.619 0.00 0.00 44.79 4.17
677 881 4.981812 TGACCAGAGTCTACAGAGTAACA 58.018 43.478 0.00 0.00 43.91 2.41
678 882 5.648526 TGATGACCAGAGTCTACAGAGTAAC 59.351 44.000 0.00 0.00 43.91 2.50
679 883 5.648526 GTGATGACCAGAGTCTACAGAGTAA 59.351 44.000 0.00 0.00 43.91 2.24
681 885 4.013728 GTGATGACCAGAGTCTACAGAGT 58.986 47.826 0.00 0.00 43.91 3.24
682 886 4.013050 TGTGATGACCAGAGTCTACAGAG 58.987 47.826 0.00 0.00 43.91 3.35
683 887 4.034285 TGTGATGACCAGAGTCTACAGA 57.966 45.455 0.00 0.00 43.91 3.41
695 900 4.240096 CAGGAAGCAAAATTGTGATGACC 58.760 43.478 0.00 1.10 0.00 4.02
729 934 2.661866 AGCAGGAACGACACACGC 60.662 61.111 0.00 0.00 46.94 5.34
733 938 0.861837 CTTGTCAGCAGGAACGACAC 59.138 55.000 0.00 0.00 39.29 3.67
798 1004 4.039092 GGGGCCAAGAGCAGCTGA 62.039 66.667 20.43 0.00 46.50 4.26
825 1031 0.679640 TGTGGGATGGGTTCGAATGC 60.680 55.000 0.00 0.00 0.00 3.56
844 1050 3.081409 AATCAGGGGCGGCGTACT 61.081 61.111 9.37 1.00 0.00 2.73
845 1051 2.300850 TACAATCAGGGGCGGCGTAC 62.301 60.000 9.37 1.33 0.00 3.67
854 1060 2.787473 TCTGCAAGGTACAATCAGGG 57.213 50.000 0.00 0.00 0.00 4.45
900 1106 1.457346 CACTGGAGACCATCTTTGCC 58.543 55.000 0.00 0.00 30.82 4.52
971 1177 2.029365 GCGATTGAAGAGGAAGTTACGC 59.971 50.000 0.00 0.00 36.06 4.42
974 1180 4.245660 CAGTGCGATTGAAGAGGAAGTTA 58.754 43.478 0.00 0.00 0.00 2.24
996 1202 1.141665 GGGTTTGGCAATCATCCGC 59.858 57.895 0.00 0.00 0.00 5.54
997 1203 0.740737 GAGGGTTTGGCAATCATCCG 59.259 55.000 0.00 0.00 0.00 4.18
1004 1210 0.325671 TTTGGGTGAGGGTTTGGCAA 60.326 50.000 0.00 0.00 0.00 4.52
1021 1227 5.690464 AGATAGATGGTGCTCACTTCTTT 57.310 39.130 9.86 4.67 0.00 2.52
1054 1261 4.799564 AGAAAGCCAAACAAAACAGACA 57.200 36.364 0.00 0.00 0.00 3.41
1111 1318 1.948104 TCAACCAAACCGACAGTCTG 58.052 50.000 0.00 0.00 0.00 3.51
1121 1328 9.079833 CAATCATCATCAGTTAATCAACCAAAC 57.920 33.333 0.00 0.00 35.05 2.93
1811 2020 3.306472 AAAGGCTAAACAGGTTGGTCA 57.694 42.857 0.00 0.00 0.00 4.02
1928 2137 0.461961 ATCTGAGCCGCTTAGACACC 59.538 55.000 16.49 0.00 29.13 4.16
1931 2140 0.461961 ACCATCTGAGCCGCTTAGAC 59.538 55.000 16.49 0.00 29.13 2.59
1933 2142 0.176680 ACACCATCTGAGCCGCTTAG 59.823 55.000 5.82 5.82 0.00 2.18
1935 2144 1.078848 GACACCATCTGAGCCGCTT 60.079 57.895 0.00 0.00 0.00 4.68
1936 2145 0.684479 TAGACACCATCTGAGCCGCT 60.684 55.000 0.00 0.00 38.49 5.52
1937 2146 0.175760 TTAGACACCATCTGAGCCGC 59.824 55.000 0.00 0.00 38.49 6.53
1938 2147 2.477825 CATTAGACACCATCTGAGCCG 58.522 52.381 0.00 0.00 38.49 5.52
1939 2148 2.216898 GCATTAGACACCATCTGAGCC 58.783 52.381 0.00 0.00 38.49 4.70
1940 2149 2.871022 CTGCATTAGACACCATCTGAGC 59.129 50.000 0.00 0.00 38.49 4.26
1941 2150 4.134379 ACTGCATTAGACACCATCTGAG 57.866 45.455 0.00 0.00 38.49 3.35
1942 2151 5.600069 AGATACTGCATTAGACACCATCTGA 59.400 40.000 0.00 0.00 38.49 3.27
1943 2152 5.851720 AGATACTGCATTAGACACCATCTG 58.148 41.667 0.00 0.00 38.49 2.90
1944 2153 6.780031 AGTAGATACTGCATTAGACACCATCT 59.220 38.462 0.00 0.00 36.96 2.90
1946 2155 6.985653 AGTAGATACTGCATTAGACACCAT 57.014 37.500 0.00 0.00 34.72 3.55
1967 2310 6.745450 CGCAAACACGGATCAAATAAATTAGT 59.255 34.615 0.00 0.00 0.00 2.24
2061 2404 4.612932 TTTGAAATGCAAACAAACCTGC 57.387 36.364 10.65 0.00 41.37 4.85
2073 2418 7.201384 GGAAAAGAATCACGAGATTTGAAATGC 60.201 37.037 9.51 0.00 44.30 3.56
2074 2419 7.809331 TGGAAAAGAATCACGAGATTTGAAATG 59.191 33.333 9.51 0.00 44.30 2.32
2101 2446 0.698238 TGGAACATGGGAGTTGGGAG 59.302 55.000 0.00 0.00 0.00 4.30
2102 2447 0.404040 GTGGAACATGGGAGTTGGGA 59.596 55.000 0.00 0.00 44.52 4.37
2103 2448 0.112218 TGTGGAACATGGGAGTTGGG 59.888 55.000 0.00 0.00 45.67 4.12
2104 2449 3.743714 TGTGGAACATGGGAGTTGG 57.256 52.632 0.00 0.00 45.67 3.77
2188 2533 4.202000 CCAATCTTGCAATGTGCCGTATTA 60.202 41.667 0.00 0.00 44.23 0.98
2190 2535 2.099592 CCAATCTTGCAATGTGCCGTAT 59.900 45.455 0.00 0.00 44.23 3.06
2194 2539 1.001181 ACACCAATCTTGCAATGTGCC 59.999 47.619 0.00 0.00 44.23 5.01
2212 2557 2.526993 CGGTGAAAACGGACGCACA 61.527 57.895 0.00 0.00 33.09 4.57
2217 2562 4.083696 ACAAATATGTCGGTGAAAACGGAC 60.084 41.667 8.99 8.99 33.41 4.79
2218 2563 4.066490 ACAAATATGTCGGTGAAAACGGA 58.934 39.130 0.00 0.00 33.41 4.69
2219 2564 4.413495 ACAAATATGTCGGTGAAAACGG 57.587 40.909 0.00 0.00 33.41 4.44
2220 2565 4.087930 GCAACAAATATGTCGGTGAAAACG 59.912 41.667 0.00 0.00 39.40 3.60
2231 2576 3.510753 TGAGCCACATGCAACAAATATGT 59.489 39.130 0.00 0.00 44.83 2.29
2269 2614 8.336801 ACTAACCCAATATCAAACTGTCTTTC 57.663 34.615 0.00 0.00 0.00 2.62
2363 2712 2.771089 TCATGCTGTCTTTCAGGTGTC 58.229 47.619 0.00 0.00 43.78 3.67
2435 2839 6.208402 TGCTTTGGTTCTAGTGATTGCAAATA 59.792 34.615 1.71 0.00 0.00 1.40
2482 2886 7.012138 AGCAATCAAAGATACATACAGCTGAAG 59.988 37.037 23.35 11.84 0.00 3.02
2498 2902 5.645067 TGTCAGAGATGGTAAGCAATCAAAG 59.355 40.000 0.00 0.00 0.00 2.77
2523 2927 2.519780 GGGCCAACACGGAAACCA 60.520 61.111 4.39 0.00 36.56 3.67
2531 2935 2.103941 TCTGGAAATTTTGGGCCAACAC 59.896 45.455 20.79 8.47 0.00 3.32
2560 2964 3.407424 TGTCATGACTCAGGGAACAAG 57.593 47.619 25.55 0.00 0.00 3.16
2576 2981 4.811024 GCTAAGATCATCGGTTTCATGTCA 59.189 41.667 0.00 0.00 0.00 3.58
2714 3120 6.379133 TGATACTGTACCTTAGTTGTACCCTG 59.621 42.308 0.00 0.00 38.21 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.