>input_sequence_69130
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-----ATGATTGCCAAACCCTCACCCAAAGAAGTGAGCACCATCTATCTAAGCATGCC-TTGTCTGTTTTGTTTGGCTTT
CTTTCTTCCTTCCTTATTCTGCTATGTGCTATACTGCCAGACTGTCGGTTTGGTTGATTAACTGATGATGATTGTGATGC
TTGCAGGATCCATGGTTGATGTTAAATGGCCCATCTCGTGCGCTCGTGTTAATTGACCCGATTGCATTTGAAGTTCAGCT
AAAAGTAAAGAGCAAAACAGAGCCTGGAAAGGATGAACTGTTGGCTTTCAAAGTTTTCAGCTACTACAAAGCTTTTCATT
CTGATGAGGTGGTATTTACACGCTTCACGTGCAAGCGCTGCACGCTTGAGTTTGCATATGCGCCGCTGCTTCCTTCAGTC
GAGGCCACTGTCACTGTCCAAGTTATTGATGGGTCATGGGACGACCATGTTCAAGGAGTTGTTACTTGCCGCACTGCCAG
CATGGAAAATGGGGAGATGGTGTTGCTTGCTTCTCGAGATGGAAAAATGCCTGTCAACT--CGGATGGTGTGATTGAGCT
TTCAAGGCGCGTTGTTTCTGTAGAATTAAGGGGACAGCTGTTGGTTTCTGTGCTGGGCCGTGGGACGGGTGATAAGAAAG
GTTTGGTCGCGACAGATACCGCTCTCTTTACACAGATGAATGCCGGCACGAGTCATGGCGTATGTGATCTTGGTTTCTGC
AAGGTGCAAGTTACTGTTGCTTGGTCCTTTCTTTCTACCCTGGCAGACATGCTGTTTTCTGCTTAA--------------
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>chr5B_1_TraesCS5B01G322400
CCACAAGCTGGCCCGAGCCGAAGGTGATCGATCCAGAGCCGCCGCGCACCCCCAATTCCGAAGGAGAAGAAAGGACGGAG
AGGGG---------------------------AACCCTAGGAGATGAAGGGGGAGATGGCGGCCGGCGGGCTGGCGGGAA
CGGAGCTGGTCAACACCGGCGGGGCGTAGGCCGGCGAAAACCCAAGGGCGACCGGCAGAGGGAAGAAGAAGGCGCTGAGG
ATGGCCCGCCAGAAGAAGCCCTCGTTCTACAGGAGAGACGATCGCCCAGACCGCGAGGAGTTCATGCGGGCTCTCAGGGA
GGAGGAGCCCATAGAGCAGAGGGAGGAGGACGAGATCCCCGA-TTACCGCGAACTCTGGGACTGTCTCTACGCCGACCAC
TTCGGCTCCTTCGACGACGAAAGTGAGTGTCAGTCGAATCTGTTTTCCTC-TTGCTGCGGATCCAATGATGAACAGGTGG
TCGAAAGTCGATGCAGGGGAGTAAAGTGAAGGGATTTTGTTGTCCTACACACGTCATTAGTAGTAATTTAGGAATCAAAA
TCAAATGATGATGAATTTTGTTTTCCTACAATATAT--------------------------------------------
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-------------------------------------------ATACTGTCAGAGACCTCTTTGCATCATGTAGGAGAAT
TA---CCCAACCCAGGCCATCC----ACATACCCGTCAATACTAGAATCCACGGCAACATGGATGGTGAAACCACCAATA
TGTTACT-CTGTAGACTCTGGTCATCACAATTTTGCTTCCTGCAAGTAGGATTGCGTGTGTCG-TTCCTGCTGACAAGCA
CCTAGTATTGCTGTCTAATACTCTTATCACAATTTTTCTTCATTCAGCTGCTCTTGGCCCCATGCGCCATGCATTCGAAC
CCATCCCACAGTACGCCGCCCCTGATTGTACCTTGCAGATCTTCTACATCCGAGTCTCCGAGATCGGCAAAGATGGTCTC
CAGTGGCCTCTGCATGTCCATGGATTGGTTGCTGCCAGGGACTCCGTAGATCACAAGCGTAACTTCCTCTTCAATCGCAC
TGCGGATGATTGCCAAACCCTCACCCAAAGAAGTGAGCACCATCTATCTAAGCATGCC-TTGTCTGTTTTGTTTGGCTTT
CTTTCTTCCTTCCTTATTCTGCTATGTGCTATACTGCCAGACTGTCGGTTTGGTTGATTAACTGATGATGATTGTGATGC
TTGCAGGATCCATGGTTGATGTTAAATGGCCCATCTCGTGCGCTCGTGTTAATTGACCCGATTGCATTTGAAGTTCAGCT
AAAAGTAAAGAGCAAAACAGAGCCTGGAAAGGATGAACTGTTGGCTTTCAAAGTTTTCAGCTACTACAAAGCTTTTCATT
CTGATGAGGTGGTATTTACACGCTTCACGTGCAAGCGCTGCACGCTTGAGTTTGCATATGCGCCGCTGCTTCCTTCAGTC
GAGGCCACTGTCACTGTCCAAGTTATTGATGGGTCATGGGACGACCATGTTCAAGGAGTTGTTACTTGCCGCACTGCCAG
CATGGAAAATGGGGAGATGGTGTTGCTTGCTTCTCGAGATGGAAAAATGCCTGTCAACT--CGGATGGTGTGATTGAGCT
TTCAAGGCGCGTTGTTTCTGTAGAATTAAGGGGACAGCTGTTGGTTTCTGTGCTGGGCCGTGGGACGGGTGATAAGAAAG
GTTTGGTCGCGACAGATACCGCTCTCTTTACACAGATGAATGCCGGCACGAGTCATGGCGTATGTGATCTTGGTTTCTGC
AAGGTGCAAGTTACTGTTGCTTGGTCCTTTCTTTCTACCCTGGCAGACATGCTGTTTTCTGCTTAACAGGTGTGTCTGGA
GGGTGTCGGGGATAGTTTTTGACCAACCTGTTTAGCCTTTTTAGTGGTGTTTCTAACTCGTAAACTGTTGAAGAACCGGT
GGTGTTTTGTAGCAGCTCAGATGGTGTCTAAGCAGCCCAGTTGTTGAGCTTATACCGGTGTCTAAGCGGCTCAGAT----
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--------------------------------------------------GGTGTCTAATGCAGTATCTACTAATTTATT
TGATCCGTGTTTGCGTGTTAGTGTGTACATGAACATACACTTGTTCTGAATTAGTTGTGCAGCACAGATGTAACTGAAAC
AATGC--AGGTTTGTTTGCATTTCAAATCTCGTGATTCTTTTCCACTCCCAACTCCCATGTTCCACAACAAACACATTTA
TGCAGTTTTTATTCATCTATGATATCCTACGAGGGCACTGATTCGATAAAAGTAATACGGCACATTGCAAGATTGGTGTG
CGTCCGTTTTCACCGACATATTTGTTGCATGTGGCTCAGCAGTCAGCACACCTGAAAGACAGTTTGATATTGGGTTAGTA
GAAGAGATCAACCATATGGCGCAGT----AACCACACCAGGTGCCTCGCATACCTTCTAGTGCTGACTCAGGACACCTGA
AAGACAGCATGATAATGAGTTTAATGACAAGTAACA--------------------------------------------
----------ACCAAAACTATACATAACTA-TATAAACTATTTGCAATCACTAGAACCAAAGCATTGCCATGGTTTCACA
TTTCACTTCAGCTGTATGTATCTTTGATTGCTTACCATCTCTGACATGGTTTCCGTGTTGGCCCAAAATTTCCAGATCAT
CATCT-TGTTCCCTGAGTCATGACATGAAACCGATGATCTTAGCTAGTTTGTTGTCCAAAGTACTTGAAATGTTATTGAC
ATTTATCAAAGGCCAGGCAATAAGGTT-TTTCTGATATCAAGTAGATTAGAAACAGAGCAAAATGATGCTATTTCTATGC
AGGGTACAACTAAGGTACAGTATCAAAGCTGTCAGTTCTCGTTTAGTTCAAGCTGTGTGCTGT
>chr5D_1
CCACGAGCTGGCCCGAGCCGAAGGTGATCGATCCAGAGCCGCCGCGCACCCCCAATTTCGAAGGAGAAAAAGAAGAAAGG
AAATAGAAAAAAACAGAAAAGCGAGGGGGAAAAACCCTAGGAGACGAAGGGGGATATGGCGGCCGGCGGGCTGGCGGGGA
CGGAGCTGGTCAGCACCGGCGGGGCGGAGGCCGGCAACAACGCAAGGGTGACCGGCAGAGGGAAGAGGAAGGCGCTGCGG
AAGGCCCGCCAGAAGAAGCCCTCGTCCTACAGGAGGGACGATCGCCGAGACCGCGAGGAGTTCATGCGGGCTCTCAGGGA
GGAGGAGCCCATAGAGCTGAGGGAGGAGGACGAGATCCCCGA-TTATCGCGAACTCTGGGACTGTCTCTACGCCGACCAC
TTCGGCTCCTTCGACGACCAAAGTGAGTGTCAGTCGAATCTGTTCTCTTC-TTGCCGCGAATCAAATGATGAATTGGAGG
GCGAAAGTCGATGCAGGGGAGTAAAGTGAAGGGATTTTGTTGTCCTACACACGGCACTAGTAGTAATTTAGGAATCG---
---AATGATGAGTAATTTTGTTTTCCTACAATATACTCCCTCCTTTCCTAAATATAAGTCTTTTTTATAGATTTCAATGC
GGACTACATACAGATACAGGTGTATATAGACATACTTTAGAGTATAGATTCACTCATTTTGGTCTGTATGTAGTCCGTAG
TGGAATCTCTAGAAAGACTTATATTTAAGAACGGAAAGAGTAGATTATGTCAGAGACCTCTTTGCATAACGTAGGAGAAT
TA---GCCAACCCAGTCCATGTAA----ATACCCGACAATGCTTGGATGGACAACAACATGGATGGTGATTGGTGAAACC
ACA--------------------ATCACAATTTTGCTTCCTGCAAGTATGGC-----ATGTAGTTTCCTGCTGACAAGCT
CCTAGTGTTGCTATATAATTCTCT--TCACATTTTTTCTACATGTAGCGGCTCTTGGTCCCATGCGCCATACATTCGAAC
CCATCCCAAGCTACGCCGCTCCTGATTGTACCTTGCAGATCTTCTACATCCGAGTCACCGAGATTAGCAAAGATGGTCTC
CAGTGGCCTCTGCATGTCCATGGCTTGGTTGCTGCGAGGGACTCTGTAGATCACAACCGCAACTTCCTCTTCAATCGCAC
TAGGGATGACTGTCAAACCCTCACCC-AAGAAGTGAGCACCATCTATCTAAGCATGCC-T-GTCTGCTTAGTTTGGCTTT
CTTTCTTCCTTCTCCCACTGCTGTCTAG-TATACTACTAGACTGTCAATTTGGTTGATTAACTGATGATGA---TGATGC
TTGCAGGATCCATGGTTGATGTTAACCGGCCCATCTCGTGCGCTCGTGTTAATTGATCCGATTGCGTTTGAAGTTCAGCT
AAAAGTAAAGAGCAAAACAGAGCCTGGAAAAGATGAACTGTTGGCTTTCAAAGTCTTCAGCTACCACAAAGCTTATCATT
CTGATGAGGTGGAATCTACACGCATCACCTGCAAGCGCTGCACGCTTGAGTTTGCATATGCGCCGTTGCTTCCTTCAGTC
GAGGCCACTGTCACTGTCCAAGTTATTGATGGGTCATGGGACGACCATGTTCAAGGAGTTGTTACTTGCCGCACTGCCAG
CATGGAAAATGGGGAGATGGTGTTGCTTGCTTCTCGAGATGGAAAAATGCCTGTCAACT--CGGATGGTGTGATTGAGCT
TTCAAGGCGCGTTGTTTCTGTAGAATTAAGGGGACAGCTGTTGGTTTCCGTGCTGGGCCGTGGGACGGGTGATAAGAAAG
GTTTGGTCGCGACAGATACCGCTCTCTTTACACAGATGAATGCCGGCACGAGTCATGGCGTATGTGATCTTGGTTTCTGC
AAGGTGCAAGTTACTGTTGCTTGGTCCTTTCTTTCTACCCTGGCAGACATGCTGCTTTCTGCTTAACAGCTGTGTCTGGA
GGGTGTCGGGGATAGTTTTCGACCAACCTGTTTAGCCTTTTTAGTGGTGTTTCTAACTCGTAAACTGTTGAAGAACCGGT
GGTGTTTTGTAGCGGCTCAGATGGTGTCTAAGCAGCCCAGTTGTTGAGCTTATACCTGTCTGTTCTTTTTATTGGTTATT
ATTACCTGTCCATTGGTACAACTGTACAAGTAAACCTGCAAAATTTTGTACTGTAAA--AAAAACCCTGCAAAGTTTTGT
ACTGACAGCACCCCATCTACTGATGGAACTTGCTGTCAATGTTTTGTGGCGGTCTCAAATGCAGTATCTGCTAATTTCGT
TGATCCGTGTTTGCGTGTTAGTGTATACATGAACATACACTTGTTCTGAATTAGTTGTGCAGCACAGATGTAACTGAAAC
AATAC--AGTT---------------------------------------------------------------------
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-----------------------------------------------------------------GCTCAGCACACCTGA
AA------------------------------------------------------------------------------
-----------------CTATACATAACTATTATAAACCATTTGCAATCACTAGAACCAAAGCATTGCCATGGTTTCACA
TTTCAGTTCAGCTGTATGTATTTTTGATTGCTTACCATCTCTGACAAGGTTTCCATGTTGGCCCAAAATTTCCAGATCAT
CATATATGTTCCCTGAGTCACGACATGAAACCGATGATCTTAGCTAGTTTGTTATCCAAAGTACTTAAAATGTTATTGAC
ATTTATCAAAGGCCAGGCAATAAGGTTTTTTCTGATATCAAGTAGATTAGAAACAGAGCAAAATGATGCTATTTCTATGT
AGGGTACAACTAAGGTACAGTATCAAAGCTGTCAGTTCTCGTTTAGTTCAAGCTGTGTGCTGT
>chr5A_9
--------TGGCCCGAGCCCAAGGTGATCGATCCAGAGCCGCCGCGCACCCCCAACTCCGAAGGAGAAGAAAGGAGAGGG
GGGG------AAACAGAGAAGCGAGGGGGAA-AACCCTAGGAGATGTTGGGGGAGATGGTGGCCGGCGGGCTGACGGGGA
CGGAGCTGGTCAGCACCGGCGGGGCGGAGGCCGGCAACAACCCAAGGACGACCGGCAGAGGGAAGAAGAAGGCGCTGACG
ATGGCCCGCGAGAAGAAGCCCTTGTCCTACCGGAAG---GATCGCCCAAACCGCGAGGAGTTCATGCGGGCTCTAAGGGA
GGAGGAGCCCATAGAGCTGAGGGAGGAGGACGAGATCCCCCGGTTACCGCGAACTCTGGGACTGTCTCTACGCCGACCAC
TTCGGCTCCTTCGACGACGAAAGTGAGTGTCAGTCGAATCTGTTTCCATCTTTGCTGCGAATCAAATGATGAAC------
--------CGATGCTGGGAAGTAAAGTGAAGGGATTGTGTTGTCCTACACATGGCACTA---GTAATTTAGGAATCA---
---AATGATGAGTAGTTTTGTTTTCCTACAAAATGT--------------------------------------------
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-------------------------------------------ATTCTGTCAGAGACCTCTTTGCATAACGTAGGGGAAT
TATTAGCCAACCCAATCCATGTACGTACATACCCGTCAATGCTTGGATGGACGACAACATGGATGGTGAAACCACCAATA
ATATTACGCTGTAGACTCTAGTCATCACAATTTTGCTTCTTGCAAGTAGGATTCTGTATGTAGTTTCCTGCTGACATGTA
CCTAGTATTTCTGTCTAATACTCTTAGCACAATTTTGCTTCATGCAGCGGCTCTTGGCGCCATGCACCATACATTCGAAC
CCATCCTGCGCTACGCCACTCCTGATTGTACCTTGCAGATCTTCTACATCCGAGTCACCGAGATCAGCAAAGATGGTCTC
CAGTGGTCTCTGCGTGTCCATGGATTGGTTGCTGCCAGGGACTCCGTAGATCACAATCGCAACTTCCTCTTCAATCGCAC
TAGGGATGACTGCCAAACCCTCACCC-AAGAAGTGAGCACCATCTATCTAAGCATGCCTT-GTCTGTTTTGTTTGGCTTT
CTTTCTTCCTTCCTTATTCTGCTATGTGCTATACTGCTAGACTGTCGATTTGGTTGATTAACTGATGATGATTGTGATGC
TTGCAGGATCCATGGTTGATGTTAACCGGCCCATCTCGTGCGCTCGTGTTAATTGACCCGATTGCGTTTGAAGTTCAGCT
AAAAGTAAAGAGCAAAACAGAGCCTGGAAAGGATGAACTGTTGGCTTCCAAAGTTTTCAGCTACTACAAAGCTTTTCATT
CTGATGAGGTGGTATCTACACGCGTCACCTGTAAGCGCTGCACGCTTGAGTTTGCATATGCGCCGCTGCTTCCTTCAGTC
GAGGCCACTGTCACTGTCCAAGTTATTGATGGGTCATGGGACGACCATGTTCAAGGAGTTGTTACTTGCCGCACTGCCAG
CATGGAAAATGGGGAGATGGTGTTGCTTGCTTCTCGAGATGGAAAAACGCCTGTCAACTCGCGGATGGTGTGATTGAGCT
TTCAAGGCGCGTTGTTTCTGTAGAATTAAGGGGACAGCTGTTGGTTTCTGTGCTGGGCCGTGGGATGGGTGATAAGAAAG
GTTTGGTCGTGACAGATACCGCTCTCTTTACACAGATGAATGTCGGCACGAGTCATGGCGTATGTGATCTTGGTTTCTGC
AAGGTGCAAGTTACTGTTGCTTGGTCCTTTCTTTCTACCCTGGCAGACATGCTGCTTTCTGCTTAACAGGTGTGTCTGGA
GGGTGTCGGGGATAGTTTTCGACCAACCTGTTTAGCCTTTTTAGTGGTGTTTCTAACTCGTAAACTGTTGAAGAACCGGT
GGTGTTTTGTAGCGGCTCAGATGGTGTCTAAGCAGCCCAGTTGTTGAGCTTATACCTGTCTGTTCTTTTTATTGGTTATT
ATTACATGTACATTGGCACAACTGTACAAGTAAACCTGCAAAATTTTGTACTGTAAAAAAAAAACCCTGCAAAGTTTTGT
ACTGACAGCACCCCATCTGCTGATGGAACTTGCTGGCAATGTTTTGTCGCGGTCTCTAATGGAGTATCTGCTAATTTATT
TGATCCGTGTTTGCGTGTTAGTGTATACATGAACATACACTT-TTCTGAATTAGTTGTGCAGCACAGATGTAACTGAAAC
AATACAGAGGTTTGTTTCAATTTCAAATCTCGTGATTCTTTTCCA-------CTCCCATGTTCCACAACAAACACATTTA
TGCAGTTTTTATTCATCTATGATATCCTACGAGGGCACTGATTCGATAAAAGCATTAC-GCACATTGCAAGATTGGCGTG
CACT-GTTTTCACCGCCATATTTGTTGCATGTGGCTCAGCAGTCAGCACACCTAAAAGACAGTTTGATATTGGGTTAGTA
GAAGAGATCAACCATATGGCGCAGTGGTCAACCACACCAGGTGCCTCGCATACCTTCTAGTGCTGGCTCAGCACACCTGA
AAGACAGCATGATAATGAGTTTAATGACAGGTAACAAGCTTGTAAAAATTGTGCCACATACCAGCCATGTCAGAGTAGCA
GTAGCTTATTACCAAAACTATACTTAACTA-TATAAACCATTTGCAATCACTAGAATCAAAGCATTGCCATGGTTTCACA
TTTCAGTTCAGCTGTATTTATTTTTTATTGCTTACCATCTCTGACAAGGTTACCATGTTGGCCCAAAATTTCCAGATCAT
CATATATGTTCCCTGAGTCACGACATGAAACCGATGATCTTAGCTAGTTTGTTGTCCAAAGTACTTGAAATGTTATTTAC
ATTTATCAAAGGTCAGGCAATAAGG-TTTTTCTGATATCAAGTAGATTAGAAACAGAGCAAAATGATGCTATTTCTATGT
AGGGTACAACTAAGGTACAGTATCAAAGCTGTCAGTTCTCGTTTAGTTCAAGTTGTGTGCTGT
>SNPs
----S----------------------------------------------------------------------SS-S-
----S-------------------------------------------------------------------------S-
------------S-------------S--------S-S------------------------------------------
-------------------------S---------S--------------------------------------------
-----------------S--------------------------------------------------------------
-----------------------------------------------S-----------S---S----------S--S--
S----------------------------------------------------S--S--------------------SSS
SSS--------SS-------------------------------------------------------------------
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---------------------------------------------S---------------------S-S----------
-----S---------S----SS------------------S--S-S--SS---S--------------------------
SSS-SSS------------S---------------------------------SS--S---S------------------
-------------------------------------------S----S---------------------S---------
---------SS--------S------------------------------------S--------S--------------
--------------------------------------------------------S--S--------------------
-SS------S----------------S---------------------------------S-------------------
-------------------------------------S---------S--------------------------------
-------------------------SS--------------------------------------S--------------
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---------------S-------S----S---------------------------------------------------
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------------------------------------------------------S-------------------------
-------------------S------------------------------------------------------------
-------------S------------------------------------------S--S-S-SSSSSSSSSS-S-----
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-----------------------------------------------------S---------------S----------
------------------------S-------------------------------------------------------
---S-------------SS--------------------------SSSSSSS----------------------------
----------------------------------------------------S-S---S-----------------S---
-SSSS----------S-------------------------------------S--------------------------
-----------------------------------------------------------------S-----S--------
-----------------------------S--------------------------------------------------
--------------------------------------S-----------------------------------------
-----S---------------S------------------------S-------S-------------------------
---S----------------S-----------------------------------------------------------
-------------------------------------------------------------------------------S
---------------------------------------------------------------
>forward_460
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----------------------------------------CTGTTTTCCTCTTGCTGCGG--------------------
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>reverse_2448
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-----------------------------------------------CCCAACTCCCATGTTCCACA-------------
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