Multiple sequence alignment - TraesCS5B01G317800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G317800 chr5B 100.000 2596 0 0 1 2596 501963064 501960469 0.000000e+00 4795.0
1 TraesCS5B01G317800 chr5B 94.253 174 10 0 254 427 127545672 127545845 1.530000e-67 267.0
2 TraesCS5B01G317800 chr5B 92.727 55 4 0 1380 1434 559992322 559992376 2.140000e-11 80.5
3 TraesCS5B01G317800 chr5B 89.286 56 6 0 1379 1434 64265108 64265053 1.290000e-08 71.3
4 TraesCS5B01G317800 chr5D 86.824 2239 148 67 440 2596 415623177 415621004 0.000000e+00 2364.0
5 TraesCS5B01G317800 chr5D 89.545 440 33 7 1854 2290 415620835 415620406 1.760000e-151 545.0
6 TraesCS5B01G317800 chr5D 89.011 273 11 6 1 260 415623439 415623173 1.160000e-83 320.0
7 TraesCS5B01G317800 chr5D 90.761 184 14 2 260 440 71475026 71474843 2.580000e-60 243.0
8 TraesCS5B01G317800 chr5D 92.727 55 4 0 1380 1434 457777269 457777323 2.140000e-11 80.5
9 TraesCS5B01G317800 chr5D 90.566 53 5 0 1379 1431 66756465 66756517 1.290000e-08 71.3
10 TraesCS5B01G317800 chr5A 89.534 1653 77 37 551 2154 528262426 528260821 0.000000e+00 2006.0
11 TraesCS5B01G317800 chr5A 90.000 150 12 2 2143 2290 528260803 528260655 9.480000e-45 191.0
12 TraesCS5B01G317800 chr5A 90.909 55 5 0 1380 1434 575658663 575658717 9.960000e-10 75.0
13 TraesCS5B01G317800 chr3D 91.304 184 13 1 262 442 552575307 552575124 5.550000e-62 248.0
14 TraesCS5B01G317800 chr3D 91.525 177 15 0 257 433 112712173 112711997 7.180000e-61 244.0
15 TraesCS5B01G317800 chr3D 89.286 56 6 0 1380 1435 81207449 81207504 1.290000e-08 71.3
16 TraesCS5B01G317800 chr1D 92.000 175 14 0 261 435 31491106 31491280 2.000000e-61 246.0
17 TraesCS5B01G317800 chr1D 90.556 180 17 0 256 435 195446903 195447082 3.340000e-59 239.0
18 TraesCS5B01G317800 chr3A 91.573 178 14 1 259 435 636738341 636738518 7.180000e-61 244.0
19 TraesCS5B01G317800 chr3A 89.286 56 6 0 1380 1435 95477886 95477941 1.290000e-08 71.3
20 TraesCS5B01G317800 chr6A 91.011 178 16 0 256 433 454935664 454935487 9.280000e-60 241.0
21 TraesCS5B01G317800 chrUn 89.175 194 14 4 258 444 79504466 79504273 4.320000e-58 235.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G317800 chr5B 501960469 501963064 2595 True 4795.000000 4795 100.000 1 2596 1 chr5B.!!$R2 2595
1 TraesCS5B01G317800 chr5D 415620406 415623439 3033 True 1076.333333 2364 88.460 1 2596 3 chr5D.!!$R2 2595
2 TraesCS5B01G317800 chr5A 528260655 528262426 1771 True 1098.500000 2006 89.767 551 2290 2 chr5A.!!$R1 1739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 398 0.039256 GCAACGAGAATTGGCAAGCA 60.039 50.0 5.96 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2336 3418 0.106719 CCGCCAGATATTGTGGGGTT 60.107 55.0 16.38 0.0 44.59 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 1.545428 GGCTTGATATTCCATGGGCGA 60.545 52.381 13.02 0.00 0.00 5.54
92 93 2.335712 CCCGTTTCAGCAGCCCTTC 61.336 63.158 0.00 0.00 0.00 3.46
95 96 1.075659 GTTTCAGCAGCCCTTCCCT 59.924 57.895 0.00 0.00 0.00 4.20
96 97 1.075482 TTTCAGCAGCCCTTCCCTG 59.925 57.895 0.00 0.00 0.00 4.45
122 124 8.923683 GGTGTGAACTTAACTAGATTGTACTTC 58.076 37.037 0.00 0.00 0.00 3.01
199 213 1.059098 AAGATGCCTGTGGACAGTCA 58.941 50.000 2.17 0.00 42.27 3.41
201 215 0.322975 GATGCCTGTGGACAGTCAGT 59.677 55.000 2.17 0.00 42.27 3.41
202 216 0.322975 ATGCCTGTGGACAGTCAGTC 59.677 55.000 2.17 0.00 46.83 3.51
204 218 0.320247 GCCTGTGGACAGTCAGTCTG 60.320 60.000 2.17 0.00 46.72 3.51
205 219 1.332195 CCTGTGGACAGTCAGTCTGA 58.668 55.000 2.17 0.00 46.72 3.27
206 220 1.271934 CCTGTGGACAGTCAGTCTGAG 59.728 57.143 1.75 0.00 46.72 3.35
221 235 4.920340 CAGTCTGAGTATAATGATCGGTGC 59.080 45.833 0.00 0.00 0.00 5.01
267 281 3.314763 CGTCGTCGTCTTAGAGCATAA 57.685 47.619 0.00 0.00 0.00 1.90
268 282 3.874706 CGTCGTCGTCTTAGAGCATAAT 58.125 45.455 0.00 0.00 0.00 1.28
269 283 4.280461 CGTCGTCGTCTTAGAGCATAATT 58.720 43.478 0.00 0.00 0.00 1.40
270 284 4.144902 CGTCGTCGTCTTAGAGCATAATTG 59.855 45.833 0.00 0.00 0.00 2.32
271 285 4.441415 GTCGTCGTCTTAGAGCATAATTGG 59.559 45.833 0.00 0.00 0.00 3.16
272 286 4.097437 TCGTCGTCTTAGAGCATAATTGGT 59.903 41.667 0.00 0.00 35.95 3.67
273 287 4.804139 CGTCGTCTTAGAGCATAATTGGTT 59.196 41.667 0.00 0.00 32.62 3.67
274 288 5.291128 CGTCGTCTTAGAGCATAATTGGTTT 59.709 40.000 0.00 0.00 32.62 3.27
275 289 6.478588 GTCGTCTTAGAGCATAATTGGTTTG 58.521 40.000 0.00 0.00 32.62 2.93
276 290 5.064707 TCGTCTTAGAGCATAATTGGTTTGC 59.935 40.000 0.00 0.00 32.62 3.68
278 292 6.257849 CGTCTTAGAGCATAATTGGTTTGCTA 59.742 38.462 6.90 0.00 46.21 3.49
279 293 7.410485 GTCTTAGAGCATAATTGGTTTGCTAC 58.590 38.462 6.90 0.39 46.21 3.58
280 294 6.542370 TCTTAGAGCATAATTGGTTTGCTACC 59.458 38.462 6.90 2.04 46.21 3.18
313 327 4.815533 TTGCCAATATTTAGCAAGCCAA 57.184 36.364 15.46 0.00 41.35 4.52
314 328 4.122143 TGCCAATATTTAGCAAGCCAAC 57.878 40.909 7.33 0.00 32.56 3.77
315 329 3.513119 TGCCAATATTTAGCAAGCCAACA 59.487 39.130 7.33 0.00 32.56 3.33
316 330 4.161942 TGCCAATATTTAGCAAGCCAACAT 59.838 37.500 7.33 0.00 32.56 2.71
317 331 5.118286 GCCAATATTTAGCAAGCCAACATT 58.882 37.500 2.93 0.00 0.00 2.71
318 332 5.585844 GCCAATATTTAGCAAGCCAACATTT 59.414 36.000 2.93 0.00 0.00 2.32
319 333 6.457257 GCCAATATTTAGCAAGCCAACATTTG 60.457 38.462 2.93 0.00 0.00 2.32
332 346 5.600908 CCAACATTTGGCAAAATCAGAAG 57.399 39.130 17.70 3.78 45.17 2.85
333 347 5.058490 CCAACATTTGGCAAAATCAGAAGT 58.942 37.500 17.70 4.62 45.17 3.01
334 348 5.528320 CCAACATTTGGCAAAATCAGAAGTT 59.472 36.000 17.70 9.90 45.17 2.66
335 349 6.423862 CAACATTTGGCAAAATCAGAAGTTG 58.576 36.000 17.70 16.48 33.59 3.16
336 350 4.512571 ACATTTGGCAAAATCAGAAGTTGC 59.487 37.500 17.70 11.38 45.48 4.17
342 356 5.678132 GCAAAATCAGAAGTTGCCAAAAT 57.322 34.783 9.37 0.00 41.41 1.82
343 357 6.063640 GCAAAATCAGAAGTTGCCAAAATT 57.936 33.333 9.37 0.00 41.41 1.82
344 358 6.497437 GCAAAATCAGAAGTTGCCAAAATTT 58.503 32.000 9.37 0.00 41.41 1.82
345 359 6.415573 GCAAAATCAGAAGTTGCCAAAATTTG 59.584 34.615 9.37 0.00 41.41 2.32
359 373 6.434018 CCAAAATTTGGCAACTTTTTGAGA 57.566 33.333 30.29 6.94 45.17 3.27
360 374 6.488817 CCAAAATTTGGCAACTTTTTGAGAG 58.511 36.000 30.29 18.49 45.17 3.20
361 375 6.315891 CCAAAATTTGGCAACTTTTTGAGAGA 59.684 34.615 30.29 5.90 45.17 3.10
362 376 6.908870 AAATTTGGCAACTTTTTGAGAGAC 57.091 33.333 9.48 0.00 34.24 3.36
363 377 5.859205 ATTTGGCAACTTTTTGAGAGACT 57.141 34.783 0.00 0.00 34.24 3.24
364 378 4.637483 TTGGCAACTTTTTGAGAGACTG 57.363 40.909 0.00 0.00 34.24 3.51
365 379 2.951642 TGGCAACTTTTTGAGAGACTGG 59.048 45.455 0.00 0.00 34.24 4.00
366 380 2.287849 GGCAACTTTTTGAGAGACTGGC 60.288 50.000 0.00 0.00 34.24 4.85
367 381 2.358898 GCAACTTTTTGAGAGACTGGCA 59.641 45.455 0.00 0.00 34.24 4.92
368 382 3.181487 GCAACTTTTTGAGAGACTGGCAA 60.181 43.478 0.00 0.00 34.24 4.52
369 383 4.354587 CAACTTTTTGAGAGACTGGCAAC 58.645 43.478 0.00 0.00 34.24 4.17
370 384 2.614057 ACTTTTTGAGAGACTGGCAACG 59.386 45.455 0.00 0.00 42.51 4.10
371 385 2.613026 TTTTGAGAGACTGGCAACGA 57.387 45.000 0.00 0.00 42.51 3.85
372 386 2.154854 TTTGAGAGACTGGCAACGAG 57.845 50.000 0.00 0.00 42.51 4.18
373 387 1.328279 TTGAGAGACTGGCAACGAGA 58.672 50.000 0.00 0.00 42.51 4.04
374 388 1.328279 TGAGAGACTGGCAACGAGAA 58.672 50.000 0.00 0.00 42.51 2.87
375 389 1.895798 TGAGAGACTGGCAACGAGAAT 59.104 47.619 0.00 0.00 42.51 2.40
376 390 2.300152 TGAGAGACTGGCAACGAGAATT 59.700 45.455 0.00 0.00 42.51 2.17
377 391 2.670414 GAGAGACTGGCAACGAGAATTG 59.330 50.000 0.00 0.00 42.51 2.32
378 392 1.734465 GAGACTGGCAACGAGAATTGG 59.266 52.381 0.00 0.00 42.51 3.16
383 397 2.729378 GCAACGAGAATTGGCAAGC 58.271 52.632 5.96 0.00 0.00 4.01
384 398 0.039256 GCAACGAGAATTGGCAAGCA 60.039 50.000 5.96 0.00 0.00 3.91
385 399 1.602668 GCAACGAGAATTGGCAAGCAA 60.603 47.619 5.96 0.00 0.00 3.91
386 400 2.927871 GCAACGAGAATTGGCAAGCAAT 60.928 45.455 5.96 0.00 0.00 3.56
387 401 2.919229 CAACGAGAATTGGCAAGCAATC 59.081 45.455 5.96 1.69 0.00 2.67
388 402 2.161855 ACGAGAATTGGCAAGCAATCA 58.838 42.857 5.96 0.00 0.00 2.57
389 403 2.557924 ACGAGAATTGGCAAGCAATCAA 59.442 40.909 5.96 0.00 0.00 2.57
390 404 3.194116 ACGAGAATTGGCAAGCAATCAAT 59.806 39.130 5.96 0.00 33.12 2.57
391 405 3.550275 CGAGAATTGGCAAGCAATCAATG 59.450 43.478 5.96 0.00 32.24 2.82
392 406 4.501071 GAGAATTGGCAAGCAATCAATGT 58.499 39.130 5.96 0.00 32.24 2.71
393 407 4.501071 AGAATTGGCAAGCAATCAATGTC 58.499 39.130 5.96 0.00 32.24 3.06
394 408 4.222145 AGAATTGGCAAGCAATCAATGTCT 59.778 37.500 5.96 0.00 32.24 3.41
395 409 5.419788 AGAATTGGCAAGCAATCAATGTCTA 59.580 36.000 5.96 0.00 32.24 2.59
396 410 4.707030 TTGGCAAGCAATCAATGTCTAG 57.293 40.909 0.00 0.00 0.00 2.43
397 411 2.424601 TGGCAAGCAATCAATGTCTAGC 59.575 45.455 0.00 0.00 0.00 3.42
398 412 2.223665 GGCAAGCAATCAATGTCTAGCC 60.224 50.000 0.00 0.00 0.00 3.93
399 413 2.424601 GCAAGCAATCAATGTCTAGCCA 59.575 45.455 0.00 0.00 0.00 4.75
400 414 3.119388 GCAAGCAATCAATGTCTAGCCAA 60.119 43.478 0.00 0.00 0.00 4.52
401 415 4.441079 GCAAGCAATCAATGTCTAGCCAAT 60.441 41.667 0.00 0.00 0.00 3.16
402 416 5.221106 GCAAGCAATCAATGTCTAGCCAATA 60.221 40.000 0.00 0.00 0.00 1.90
403 417 6.516194 GCAAGCAATCAATGTCTAGCCAATAT 60.516 38.462 0.00 0.00 0.00 1.28
404 418 7.431249 CAAGCAATCAATGTCTAGCCAATATT 58.569 34.615 0.00 0.00 0.00 1.28
405 419 7.592885 AGCAATCAATGTCTAGCCAATATTT 57.407 32.000 0.00 0.00 0.00 1.40
406 420 7.431249 AGCAATCAATGTCTAGCCAATATTTG 58.569 34.615 0.00 0.00 0.00 2.32
444 458 5.581126 TGGCAAACCAATTATGCTCTTAG 57.419 39.130 0.00 0.00 45.37 2.18
445 459 5.016173 TGGCAAACCAATTATGCTCTTAGT 58.984 37.500 0.00 0.00 45.37 2.24
446 460 5.480073 TGGCAAACCAATTATGCTCTTAGTT 59.520 36.000 0.00 0.00 45.37 2.24
447 461 6.661377 TGGCAAACCAATTATGCTCTTAGTTA 59.339 34.615 0.00 0.00 45.37 2.24
448 462 7.148086 TGGCAAACCAATTATGCTCTTAGTTAG 60.148 37.037 0.00 0.00 45.37 2.34
449 463 7.148069 GGCAAACCAATTATGCTCTTAGTTAGT 60.148 37.037 0.00 0.00 39.94 2.24
450 464 8.244113 GCAAACCAATTATGCTCTTAGTTAGTT 58.756 33.333 0.00 0.00 37.12 2.24
466 480 5.560724 AGTTAGTTTATCAGTGCATGTGGT 58.439 37.500 0.00 0.00 0.00 4.16
494 508 2.352503 AATGTTCGACTTGGCATTGC 57.647 45.000 0.00 0.00 31.29 3.56
510 524 3.917985 GCATTGCCTCGTTAAATTTCGTT 59.082 39.130 0.00 0.00 0.00 3.85
511 525 4.201485 GCATTGCCTCGTTAAATTTCGTTG 60.201 41.667 0.00 0.00 0.00 4.10
513 527 4.398549 TGCCTCGTTAAATTTCGTTGAG 57.601 40.909 0.00 0.00 0.00 3.02
514 528 4.059511 TGCCTCGTTAAATTTCGTTGAGA 58.940 39.130 0.00 0.00 0.00 3.27
515 529 4.512198 TGCCTCGTTAAATTTCGTTGAGAA 59.488 37.500 0.00 0.00 37.01 2.87
526 540 4.811555 TTCGTTGAGAAACCAGACAATG 57.188 40.909 0.00 0.00 35.61 2.82
527 541 3.563808 TTCGTTGAGAAACCAGACAATGG 59.436 43.478 0.00 0.00 43.95 3.16
535 549 2.343506 CCAGACAATGGTTGCTGCA 58.656 52.632 0.00 0.00 44.91 4.41
541 577 0.311790 CAATGGTTGCTGCACGAACT 59.688 50.000 0.00 0.00 0.00 3.01
571 608 1.160137 GTCACGGCTGAGCTGATTTT 58.840 50.000 21.86 0.00 38.46 1.82
572 609 1.129437 GTCACGGCTGAGCTGATTTTC 59.871 52.381 21.86 1.93 38.46 2.29
573 610 1.002430 TCACGGCTGAGCTGATTTTCT 59.998 47.619 21.86 0.00 38.46 2.52
574 611 1.808945 CACGGCTGAGCTGATTTTCTT 59.191 47.619 21.86 0.00 38.46 2.52
575 612 2.227388 CACGGCTGAGCTGATTTTCTTT 59.773 45.455 21.86 0.00 38.46 2.52
653 690 3.207669 CCGGTCGGGTCCTACGAG 61.208 72.222 0.74 0.00 41.50 4.18
654 691 2.124983 CGGTCGGGTCCTACGAGA 60.125 66.667 0.00 0.00 41.50 4.04
736 788 4.924187 CCGCCCGGGATCCTCTCT 62.924 72.222 29.31 0.00 38.47 3.10
737 789 3.610669 CGCCCGGGATCCTCTCTG 61.611 72.222 29.31 0.00 0.00 3.35
738 790 3.934962 GCCCGGGATCCTCTCTGC 61.935 72.222 29.31 0.00 0.00 4.26
739 791 3.610669 CCCGGGATCCTCTCTGCG 61.611 72.222 18.48 5.23 0.00 5.18
740 792 4.292178 CCGGGATCCTCTCTGCGC 62.292 72.222 12.58 0.00 0.00 6.09
840 897 1.519751 CCTCAGAGGATCGGGTAGCG 61.520 65.000 11.62 0.00 42.67 4.26
880 944 1.534595 GGCGCGGTGTATATATACGGG 60.535 57.143 16.29 13.71 39.93 5.28
909 974 4.584688 GCCAAAGCTTGCCATCAC 57.415 55.556 0.00 0.00 35.50 3.06
910 975 1.444895 GCCAAAGCTTGCCATCACG 60.445 57.895 0.00 0.00 35.50 4.35
911 976 1.865788 GCCAAAGCTTGCCATCACGA 61.866 55.000 0.00 0.00 35.50 4.35
912 977 0.109597 CCAAAGCTTGCCATCACGAC 60.110 55.000 0.00 0.00 0.00 4.34
913 978 0.453282 CAAAGCTTGCCATCACGACG 60.453 55.000 0.00 0.00 0.00 5.12
919 984 3.238241 GCCATCACGACGACGACG 61.238 66.667 17.60 17.60 42.66 5.12
920 985 2.576053 CCATCACGACGACGACGG 60.576 66.667 22.36 12.09 44.46 4.79
921 986 2.576053 CATCACGACGACGACGGG 60.576 66.667 22.36 19.24 44.46 5.28
955 1020 1.075659 GCCTCCCAAACTTCCAGCT 59.924 57.895 0.00 0.00 0.00 4.24
971 1036 1.671379 GCTTCTGAACCCACCGACC 60.671 63.158 0.00 0.00 0.00 4.79
972 1037 1.752198 CTTCTGAACCCACCGACCA 59.248 57.895 0.00 0.00 0.00 4.02
1011 1089 1.781786 TGAGAGTGATGGGGAGCTAC 58.218 55.000 0.00 0.00 0.00 3.58
1258 1336 1.271656 AGCAACCAAAGCTTCAGCATC 59.728 47.619 0.00 0.00 45.16 3.91
1285 1374 3.937814 TGGACAGCCATGTTAAGTACAG 58.062 45.455 0.00 0.00 40.68 2.74
1286 1375 3.326588 TGGACAGCCATGTTAAGTACAGT 59.673 43.478 0.00 0.00 40.68 3.55
1287 1376 4.528987 TGGACAGCCATGTTAAGTACAGTA 59.471 41.667 0.00 0.00 40.68 2.74
1292 1381 7.042335 ACAGCCATGTTAAGTACAGTAAGATC 58.958 38.462 0.00 0.00 40.83 2.75
1309 1398 6.883217 AGTAAGATCTTGTGCACTGATCAATT 59.117 34.615 33.33 26.55 39.07 2.32
1311 1400 5.250982 AGATCTTGTGCACTGATCAATTCA 58.749 37.500 33.33 8.65 39.07 2.57
1312 1401 5.708697 AGATCTTGTGCACTGATCAATTCAA 59.291 36.000 33.33 14.29 39.07 2.69
1313 1402 5.970317 TCTTGTGCACTGATCAATTCAAT 57.030 34.783 19.41 0.00 32.78 2.57
1314 1403 5.705902 TCTTGTGCACTGATCAATTCAATG 58.294 37.500 19.41 0.00 34.69 2.82
1319 1408 4.611310 CACTGATCAATTCAATGCTCGT 57.389 40.909 0.00 0.00 32.78 4.18
1461 1552 0.857311 CACCAATTGTTCGATCGCGC 60.857 55.000 11.09 0.00 37.46 6.86
1605 1696 0.943835 CAACGCGTGATGACAGACCA 60.944 55.000 14.98 0.00 0.00 4.02
1656 1749 3.669251 AGTCTCACAGGCTAACAGAAC 57.331 47.619 0.00 0.00 0.00 3.01
1743 1859 7.656137 TGAAGTTTGACCTGATACTAAACTGAC 59.344 37.037 0.00 0.00 40.35 3.51
1754 1872 9.856488 CTGATACTAAACTGACAGCTTACTAAA 57.144 33.333 1.25 0.00 0.00 1.85
1756 1874 9.303537 GATACTAAACTGACAGCTTACTAAAGG 57.696 37.037 1.25 0.00 32.98 3.11
1846 1968 0.737715 GGTGTGACAGCGATGAGGAC 60.738 60.000 8.12 0.75 0.00 3.85
1865 1999 1.089920 CCCAAGGAAGCAAGACGATG 58.910 55.000 0.00 0.00 0.00 3.84
1866 2000 1.339055 CCCAAGGAAGCAAGACGATGA 60.339 52.381 0.00 0.00 0.00 2.92
1867 2001 1.734465 CCAAGGAAGCAAGACGATGAC 59.266 52.381 0.00 0.00 0.00 3.06
1868 2002 1.391485 CAAGGAAGCAAGACGATGACG 59.609 52.381 0.00 0.00 45.75 4.35
1869 2003 0.737715 AGGAAGCAAGACGATGACGC 60.738 55.000 0.00 0.00 43.96 5.19
1870 2004 1.341802 GAAGCAAGACGATGACGCG 59.658 57.895 3.53 3.53 43.96 6.01
1871 2005 1.071019 GAAGCAAGACGATGACGCGA 61.071 55.000 15.93 0.00 43.96 5.87
1872 2006 0.458543 AAGCAAGACGATGACGCGAT 60.459 50.000 15.93 0.00 43.96 4.58
1873 2007 0.458543 AGCAAGACGATGACGCGATT 60.459 50.000 15.93 0.00 43.96 3.34
1874 2008 0.043822 GCAAGACGATGACGCGATTC 60.044 55.000 15.93 0.00 43.96 2.52
1875 2009 0.572590 CAAGACGATGACGCGATTCC 59.427 55.000 15.93 0.00 43.96 3.01
2092 2226 4.558226 AGTGTAGTTCAATGCCTCATCA 57.442 40.909 0.00 0.00 0.00 3.07
2099 2233 4.643784 AGTTCAATGCCTCATCAATCCTTC 59.356 41.667 0.00 0.00 0.00 3.46
2111 2245 4.672587 TCAATCCTTCGGTTCCATCTAG 57.327 45.455 0.00 0.00 0.00 2.43
2164 3245 5.620206 TGTACATGGATCAAGAGTTTGTGT 58.380 37.500 0.00 0.00 35.73 3.72
2174 3255 4.104102 TCAAGAGTTTGTGTACCTCCCAAT 59.896 41.667 0.00 0.00 35.73 3.16
2203 3284 4.484236 TGAAATGTGCTTAATTCGCCTTG 58.516 39.130 0.00 0.00 0.00 3.61
2216 3297 3.848272 TCGCCTTGAATTTGGAACATC 57.152 42.857 0.00 0.00 39.30 3.06
2218 3299 4.584874 TCGCCTTGAATTTGGAACATCTA 58.415 39.130 0.00 0.00 39.30 1.98
2222 3303 6.473455 CGCCTTGAATTTGGAACATCTATTTC 59.527 38.462 0.00 0.00 39.30 2.17
2224 3305 7.704047 GCCTTGAATTTGGAACATCTATTTCTC 59.296 37.037 0.00 0.00 39.30 2.87
2255 3336 4.655963 TCCAACTTGGAGGAATCTTGAAG 58.344 43.478 6.39 0.00 42.67 3.02
2256 3337 4.350816 TCCAACTTGGAGGAATCTTGAAGA 59.649 41.667 6.39 0.00 42.67 2.87
2258 3339 3.949132 ACTTGGAGGAATCTTGAAGAGC 58.051 45.455 0.00 0.00 0.00 4.09
2278 3360 1.404851 CGGGGCAACTTTGTTTGTTGT 60.405 47.619 8.15 0.00 44.54 3.32
2279 3361 2.159226 CGGGGCAACTTTGTTTGTTGTA 60.159 45.455 8.15 0.00 44.54 2.41
2290 3372 8.994429 ACTTTGTTTGTTGTATTCATTGTTGA 57.006 26.923 0.00 0.00 0.00 3.18
2291 3373 8.868916 ACTTTGTTTGTTGTATTCATTGTTGAC 58.131 29.630 0.00 0.00 0.00 3.18
2292 3374 7.763172 TTGTTTGTTGTATTCATTGTTGACC 57.237 32.000 0.00 0.00 0.00 4.02
2293 3375 6.867550 TGTTTGTTGTATTCATTGTTGACCA 58.132 32.000 0.00 0.00 0.00 4.02
2294 3376 6.977502 TGTTTGTTGTATTCATTGTTGACCAG 59.022 34.615 0.00 0.00 0.00 4.00
2295 3377 5.119931 TGTTGTATTCATTGTTGACCAGC 57.880 39.130 0.00 0.00 0.00 4.85
2296 3378 4.582240 TGTTGTATTCATTGTTGACCAGCA 59.418 37.500 0.00 0.00 0.00 4.41
2297 3379 5.068329 TGTTGTATTCATTGTTGACCAGCAA 59.932 36.000 1.95 1.95 36.03 3.91
2306 3388 1.327303 TTGACCAGCAACAATCCACC 58.673 50.000 0.00 0.00 0.00 4.61
2307 3389 0.888736 TGACCAGCAACAATCCACCG 60.889 55.000 0.00 0.00 0.00 4.94
2308 3390 0.605319 GACCAGCAACAATCCACCGA 60.605 55.000 0.00 0.00 0.00 4.69
2309 3391 0.179004 ACCAGCAACAATCCACCGAA 60.179 50.000 0.00 0.00 0.00 4.30
2310 3392 0.958091 CCAGCAACAATCCACCGAAA 59.042 50.000 0.00 0.00 0.00 3.46
2311 3393 1.335872 CCAGCAACAATCCACCGAAAC 60.336 52.381 0.00 0.00 0.00 2.78
2312 3394 1.608590 CAGCAACAATCCACCGAAACT 59.391 47.619 0.00 0.00 0.00 2.66
2313 3395 2.811431 CAGCAACAATCCACCGAAACTA 59.189 45.455 0.00 0.00 0.00 2.24
2314 3396 3.252215 CAGCAACAATCCACCGAAACTAA 59.748 43.478 0.00 0.00 0.00 2.24
2315 3397 3.252458 AGCAACAATCCACCGAAACTAAC 59.748 43.478 0.00 0.00 0.00 2.34
2316 3398 3.003897 GCAACAATCCACCGAAACTAACA 59.996 43.478 0.00 0.00 0.00 2.41
2317 3399 4.498345 GCAACAATCCACCGAAACTAACAA 60.498 41.667 0.00 0.00 0.00 2.83
2318 3400 5.212194 CAACAATCCACCGAAACTAACAAG 58.788 41.667 0.00 0.00 0.00 3.16
2319 3401 4.710324 ACAATCCACCGAAACTAACAAGA 58.290 39.130 0.00 0.00 0.00 3.02
2320 3402 5.127491 ACAATCCACCGAAACTAACAAGAA 58.873 37.500 0.00 0.00 0.00 2.52
2321 3403 5.238650 ACAATCCACCGAAACTAACAAGAAG 59.761 40.000 0.00 0.00 0.00 2.85
2322 3404 4.675976 TCCACCGAAACTAACAAGAAGA 57.324 40.909 0.00 0.00 0.00 2.87
2323 3405 4.374399 TCCACCGAAACTAACAAGAAGAC 58.626 43.478 0.00 0.00 0.00 3.01
2324 3406 3.497262 CCACCGAAACTAACAAGAAGACC 59.503 47.826 0.00 0.00 0.00 3.85
2325 3407 4.124238 CACCGAAACTAACAAGAAGACCA 58.876 43.478 0.00 0.00 0.00 4.02
2326 3408 4.573201 CACCGAAACTAACAAGAAGACCAA 59.427 41.667 0.00 0.00 0.00 3.67
2327 3409 4.573607 ACCGAAACTAACAAGAAGACCAAC 59.426 41.667 0.00 0.00 0.00 3.77
2328 3410 4.573201 CCGAAACTAACAAGAAGACCAACA 59.427 41.667 0.00 0.00 0.00 3.33
2329 3411 5.238650 CCGAAACTAACAAGAAGACCAACAT 59.761 40.000 0.00 0.00 0.00 2.71
2330 3412 6.363473 CGAAACTAACAAGAAGACCAACATC 58.637 40.000 0.00 0.00 0.00 3.06
2331 3413 5.924475 AACTAACAAGAAGACCAACATCG 57.076 39.130 0.00 0.00 0.00 3.84
2332 3414 5.209818 ACTAACAAGAAGACCAACATCGA 57.790 39.130 0.00 0.00 0.00 3.59
2333 3415 5.794894 ACTAACAAGAAGACCAACATCGAT 58.205 37.500 0.00 0.00 0.00 3.59
2334 3416 6.231211 ACTAACAAGAAGACCAACATCGATT 58.769 36.000 0.00 0.00 0.00 3.34
2335 3417 5.362556 AACAAGAAGACCAACATCGATTG 57.637 39.130 0.00 0.00 0.00 2.67
2336 3418 4.641396 ACAAGAAGACCAACATCGATTGA 58.359 39.130 0.00 0.00 0.00 2.57
2337 3419 5.063204 ACAAGAAGACCAACATCGATTGAA 58.937 37.500 0.00 0.00 0.00 2.69
2338 3420 5.049405 ACAAGAAGACCAACATCGATTGAAC 60.049 40.000 0.00 0.00 0.00 3.18
2339 3421 4.003648 AGAAGACCAACATCGATTGAACC 58.996 43.478 0.00 0.00 0.00 3.62
2340 3422 2.711542 AGACCAACATCGATTGAACCC 58.288 47.619 0.00 0.00 0.00 4.11
2341 3423 1.743394 GACCAACATCGATTGAACCCC 59.257 52.381 0.00 0.00 0.00 4.95
2342 3424 1.074727 ACCAACATCGATTGAACCCCA 59.925 47.619 0.00 0.00 0.00 4.96
2343 3425 1.472480 CCAACATCGATTGAACCCCAC 59.528 52.381 0.00 0.00 0.00 4.61
2344 3426 2.158559 CAACATCGATTGAACCCCACA 58.841 47.619 0.00 0.00 0.00 4.17
2345 3427 2.556189 CAACATCGATTGAACCCCACAA 59.444 45.455 0.00 0.00 0.00 3.33
2346 3428 3.085952 ACATCGATTGAACCCCACAAT 57.914 42.857 0.00 0.00 40.08 2.71
2347 3429 4.229304 ACATCGATTGAACCCCACAATA 57.771 40.909 0.00 0.00 37.96 1.90
2348 3430 4.792068 ACATCGATTGAACCCCACAATAT 58.208 39.130 0.00 0.00 37.96 1.28
2349 3431 4.821805 ACATCGATTGAACCCCACAATATC 59.178 41.667 0.00 0.00 37.96 1.63
2350 3432 4.771114 TCGATTGAACCCCACAATATCT 57.229 40.909 0.00 0.00 37.96 1.98
2351 3433 4.450976 TCGATTGAACCCCACAATATCTG 58.549 43.478 0.00 0.00 37.96 2.90
2352 3434 3.565482 CGATTGAACCCCACAATATCTGG 59.435 47.826 0.00 0.00 37.96 3.86
2353 3435 2.435372 TGAACCCCACAATATCTGGC 57.565 50.000 0.00 0.00 0.00 4.85
2354 3436 1.308998 GAACCCCACAATATCTGGCG 58.691 55.000 0.00 0.00 0.00 5.69
2355 3437 0.106719 AACCCCACAATATCTGGCGG 60.107 55.000 0.00 0.00 0.00 6.13
2356 3438 0.986019 ACCCCACAATATCTGGCGGA 60.986 55.000 0.00 0.00 0.00 5.54
2357 3439 0.250467 CCCCACAATATCTGGCGGAG 60.250 60.000 1.04 0.00 0.00 4.63
2358 3440 0.758734 CCCACAATATCTGGCGGAGA 59.241 55.000 1.04 0.00 34.25 3.71
2359 3441 1.541233 CCCACAATATCTGGCGGAGAC 60.541 57.143 1.04 0.00 31.75 3.36
2361 3443 2.205074 CACAATATCTGGCGGAGACAC 58.795 52.381 1.04 0.00 34.89 3.67
2362 3444 1.831106 ACAATATCTGGCGGAGACACA 59.169 47.619 1.04 0.00 34.89 3.72
2363 3445 2.435805 ACAATATCTGGCGGAGACACAT 59.564 45.455 1.04 0.00 34.89 3.21
2364 3446 3.062763 CAATATCTGGCGGAGACACATC 58.937 50.000 1.04 0.00 34.89 3.06
2365 3447 2.073252 TATCTGGCGGAGACACATCT 57.927 50.000 1.04 0.00 34.89 2.90
2366 3448 0.749649 ATCTGGCGGAGACACATCTC 59.250 55.000 1.04 0.00 34.89 2.75
2367 3449 1.142748 CTGGCGGAGACACATCTCC 59.857 63.158 12.54 12.54 34.89 3.71
2368 3450 2.303549 CTGGCGGAGACACATCTCCC 62.304 65.000 16.01 9.64 34.89 4.30
2373 3455 2.755929 GAGACACATCTCCCAACGC 58.244 57.895 0.00 0.00 45.06 4.84
2374 3456 0.247736 GAGACACATCTCCCAACGCT 59.752 55.000 0.00 0.00 45.06 5.07
2375 3457 0.247736 AGACACATCTCCCAACGCTC 59.752 55.000 0.00 0.00 0.00 5.03
2376 3458 0.247736 GACACATCTCCCAACGCTCT 59.752 55.000 0.00 0.00 0.00 4.09
2377 3459 0.247736 ACACATCTCCCAACGCTCTC 59.752 55.000 0.00 0.00 0.00 3.20
2378 3460 0.460987 CACATCTCCCAACGCTCTCC 60.461 60.000 0.00 0.00 0.00 3.71
2379 3461 1.227089 CATCTCCCAACGCTCTCCG 60.227 63.158 0.00 0.00 44.21 4.63
2380 3462 1.379977 ATCTCCCAACGCTCTCCGA 60.380 57.895 0.00 0.00 41.02 4.55
2381 3463 1.668101 ATCTCCCAACGCTCTCCGAC 61.668 60.000 0.00 0.00 41.02 4.79
2382 3464 2.599281 TCCCAACGCTCTCCGACA 60.599 61.111 0.00 0.00 41.02 4.35
2383 3465 2.154798 CTCCCAACGCTCTCCGACAA 62.155 60.000 0.00 0.00 41.02 3.18
2384 3466 2.027625 CCCAACGCTCTCCGACAAC 61.028 63.158 0.00 0.00 41.02 3.32
2385 3467 2.372690 CCAACGCTCTCCGACAACG 61.373 63.158 0.00 0.00 41.02 4.10
2386 3468 2.733593 AACGCTCTCCGACAACGC 60.734 61.111 0.00 0.00 41.02 4.84
2387 3469 3.208884 AACGCTCTCCGACAACGCT 62.209 57.895 0.00 0.00 41.02 5.07
2388 3470 1.859427 AACGCTCTCCGACAACGCTA 61.859 55.000 0.00 0.00 41.02 4.26
2389 3471 1.154093 CGCTCTCCGACAACGCTAA 60.154 57.895 0.00 0.00 40.02 3.09
2390 3472 0.731514 CGCTCTCCGACAACGCTAAA 60.732 55.000 0.00 0.00 40.02 1.85
2391 3473 0.714439 GCTCTCCGACAACGCTAAAC 59.286 55.000 0.00 0.00 38.29 2.01
2392 3474 1.933500 GCTCTCCGACAACGCTAAACA 60.934 52.381 0.00 0.00 38.29 2.83
2393 3475 1.719780 CTCTCCGACAACGCTAAACAC 59.280 52.381 0.00 0.00 38.29 3.32
2394 3476 1.067364 TCTCCGACAACGCTAAACACA 59.933 47.619 0.00 0.00 38.29 3.72
2395 3477 2.066262 CTCCGACAACGCTAAACACAT 58.934 47.619 0.00 0.00 38.29 3.21
2396 3478 2.063266 TCCGACAACGCTAAACACATC 58.937 47.619 0.00 0.00 38.29 3.06
2397 3479 1.795872 CCGACAACGCTAAACACATCA 59.204 47.619 0.00 0.00 38.29 3.07
2398 3480 2.415168 CCGACAACGCTAAACACATCAT 59.585 45.455 0.00 0.00 38.29 2.45
2399 3481 3.120338 CCGACAACGCTAAACACATCATT 60.120 43.478 0.00 0.00 38.29 2.57
2400 3482 3.840209 CGACAACGCTAAACACATCATTG 59.160 43.478 0.00 0.00 0.00 2.82
2401 3483 4.158384 GACAACGCTAAACACATCATTGG 58.842 43.478 0.00 0.00 0.00 3.16
2402 3484 3.057596 ACAACGCTAAACACATCATTGGG 60.058 43.478 0.00 0.00 0.00 4.12
2403 3485 3.066291 ACGCTAAACACATCATTGGGA 57.934 42.857 0.00 0.00 0.00 4.37
2404 3486 3.620488 ACGCTAAACACATCATTGGGAT 58.380 40.909 0.00 0.00 36.39 3.85
2417 3499 5.590530 TCATTGGGATGGGAATAAAAACG 57.409 39.130 0.00 0.00 33.93 3.60
2418 3500 5.020132 TCATTGGGATGGGAATAAAAACGT 58.980 37.500 0.00 0.00 33.93 3.99
2419 3501 4.792521 TTGGGATGGGAATAAAAACGTG 57.207 40.909 0.00 0.00 0.00 4.49
2420 3502 3.093057 TGGGATGGGAATAAAAACGTGG 58.907 45.455 0.00 0.00 0.00 4.94
2421 3503 2.429250 GGGATGGGAATAAAAACGTGGG 59.571 50.000 0.00 0.00 0.00 4.61
2422 3504 3.358118 GGATGGGAATAAAAACGTGGGA 58.642 45.455 0.00 0.00 0.00 4.37
2423 3505 3.380320 GGATGGGAATAAAAACGTGGGAG 59.620 47.826 0.00 0.00 0.00 4.30
2424 3506 3.791953 TGGGAATAAAAACGTGGGAGA 57.208 42.857 0.00 0.00 0.00 3.71
2425 3507 3.414269 TGGGAATAAAAACGTGGGAGAC 58.586 45.455 0.00 0.00 0.00 3.36
2426 3508 3.181442 TGGGAATAAAAACGTGGGAGACA 60.181 43.478 0.00 0.00 0.00 3.41
2427 3509 4.014406 GGGAATAAAAACGTGGGAGACAT 58.986 43.478 0.00 0.00 0.00 3.06
2428 3510 4.461431 GGGAATAAAAACGTGGGAGACATT 59.539 41.667 0.00 0.00 0.00 2.71
2429 3511 5.648960 GGGAATAAAAACGTGGGAGACATTA 59.351 40.000 0.00 0.00 0.00 1.90
2430 3512 6.320418 GGGAATAAAAACGTGGGAGACATTAT 59.680 38.462 0.00 0.00 0.00 1.28
2431 3513 7.147966 GGGAATAAAAACGTGGGAGACATTATT 60.148 37.037 0.00 0.00 0.00 1.40
2432 3514 7.913821 GGAATAAAAACGTGGGAGACATTATTC 59.086 37.037 0.00 0.00 37.59 1.75
2433 3515 8.575649 AATAAAAACGTGGGAGACATTATTCT 57.424 30.769 0.00 0.00 0.00 2.40
2434 3516 6.894339 AAAAACGTGGGAGACATTATTCTT 57.106 33.333 0.00 0.00 0.00 2.52
2435 3517 6.496338 AAAACGTGGGAGACATTATTCTTC 57.504 37.500 0.00 0.00 0.00 2.87
2436 3518 4.819105 ACGTGGGAGACATTATTCTTCA 57.181 40.909 0.00 0.00 0.00 3.02
2437 3519 5.359194 ACGTGGGAGACATTATTCTTCAT 57.641 39.130 0.00 0.00 0.00 2.57
2438 3520 5.360591 ACGTGGGAGACATTATTCTTCATC 58.639 41.667 0.00 0.00 0.00 2.92
2439 3521 5.104941 ACGTGGGAGACATTATTCTTCATCA 60.105 40.000 0.00 0.00 0.00 3.07
2440 3522 5.235186 CGTGGGAGACATTATTCTTCATCAC 59.765 44.000 0.00 0.00 0.00 3.06
2441 3523 5.529060 GTGGGAGACATTATTCTTCATCACC 59.471 44.000 0.00 0.00 0.00 4.02
2442 3524 5.191522 TGGGAGACATTATTCTTCATCACCA 59.808 40.000 0.00 0.00 0.00 4.17
2443 3525 5.529060 GGGAGACATTATTCTTCATCACCAC 59.471 44.000 0.00 0.00 0.00 4.16
2444 3526 6.115446 GGAGACATTATTCTTCATCACCACA 58.885 40.000 0.00 0.00 0.00 4.17
2445 3527 6.599244 GGAGACATTATTCTTCATCACCACAA 59.401 38.462 0.00 0.00 0.00 3.33
2446 3528 7.383102 AGACATTATTCTTCATCACCACAAC 57.617 36.000 0.00 0.00 0.00 3.32
2447 3529 6.375455 AGACATTATTCTTCATCACCACAACC 59.625 38.462 0.00 0.00 0.00 3.77
2448 3530 5.418840 ACATTATTCTTCATCACCACAACCC 59.581 40.000 0.00 0.00 0.00 4.11
2449 3531 2.286365 TTCTTCATCACCACAACCCC 57.714 50.000 0.00 0.00 0.00 4.95
2450 3532 0.036164 TCTTCATCACCACAACCCCG 59.964 55.000 0.00 0.00 0.00 5.73
2451 3533 0.036164 CTTCATCACCACAACCCCGA 59.964 55.000 0.00 0.00 0.00 5.14
2452 3534 0.250553 TTCATCACCACAACCCCGAC 60.251 55.000 0.00 0.00 0.00 4.79
2453 3535 1.674322 CATCACCACAACCCCGACC 60.674 63.158 0.00 0.00 0.00 4.79
2454 3536 2.150719 ATCACCACAACCCCGACCA 61.151 57.895 0.00 0.00 0.00 4.02
2455 3537 1.710996 ATCACCACAACCCCGACCAA 61.711 55.000 0.00 0.00 0.00 3.67
2456 3538 1.896660 CACCACAACCCCGACCAAG 60.897 63.158 0.00 0.00 0.00 3.61
2457 3539 2.073716 ACCACAACCCCGACCAAGA 61.074 57.895 0.00 0.00 0.00 3.02
2458 3540 1.378762 CCACAACCCCGACCAAGAT 59.621 57.895 0.00 0.00 0.00 2.40
2459 3541 0.616371 CCACAACCCCGACCAAGATA 59.384 55.000 0.00 0.00 0.00 1.98
2460 3542 1.211949 CCACAACCCCGACCAAGATAT 59.788 52.381 0.00 0.00 0.00 1.63
2461 3543 2.356741 CCACAACCCCGACCAAGATATT 60.357 50.000 0.00 0.00 0.00 1.28
2462 3544 2.682856 CACAACCCCGACCAAGATATTG 59.317 50.000 0.00 0.00 0.00 1.90
2463 3545 2.574369 ACAACCCCGACCAAGATATTGA 59.426 45.455 0.54 0.00 0.00 2.57
2464 3546 3.009695 ACAACCCCGACCAAGATATTGAA 59.990 43.478 0.54 0.00 0.00 2.69
2465 3547 4.013728 CAACCCCGACCAAGATATTGAAA 58.986 43.478 0.54 0.00 0.00 2.69
2466 3548 3.617284 ACCCCGACCAAGATATTGAAAC 58.383 45.455 0.54 0.00 0.00 2.78
2467 3549 3.265995 ACCCCGACCAAGATATTGAAACT 59.734 43.478 0.54 0.00 0.00 2.66
2468 3550 4.472108 ACCCCGACCAAGATATTGAAACTA 59.528 41.667 0.54 0.00 0.00 2.24
2469 3551 5.045432 ACCCCGACCAAGATATTGAAACTAA 60.045 40.000 0.54 0.00 0.00 2.24
2470 3552 5.883673 CCCCGACCAAGATATTGAAACTAAA 59.116 40.000 0.54 0.00 0.00 1.85
2471 3553 6.038271 CCCCGACCAAGATATTGAAACTAAAG 59.962 42.308 0.54 0.00 0.00 1.85
2472 3554 6.821665 CCCGACCAAGATATTGAAACTAAAGA 59.178 38.462 0.54 0.00 0.00 2.52
2473 3555 7.335924 CCCGACCAAGATATTGAAACTAAAGAA 59.664 37.037 0.54 0.00 0.00 2.52
2474 3556 8.175716 CCGACCAAGATATTGAAACTAAAGAAC 58.824 37.037 0.54 0.00 0.00 3.01
2475 3557 7.898309 CGACCAAGATATTGAAACTAAAGAACG 59.102 37.037 0.54 0.00 0.00 3.95
2476 3558 8.842358 ACCAAGATATTGAAACTAAAGAACGA 57.158 30.769 0.54 0.00 0.00 3.85
2477 3559 8.936864 ACCAAGATATTGAAACTAAAGAACGAG 58.063 33.333 0.54 0.00 0.00 4.18
2478 3560 9.151471 CCAAGATATTGAAACTAAAGAACGAGA 57.849 33.333 0.54 0.00 0.00 4.04
2483 3565 7.602517 ATTGAAACTAAAGAACGAGATCAGG 57.397 36.000 0.00 0.00 0.00 3.86
2484 3566 6.340962 TGAAACTAAAGAACGAGATCAGGA 57.659 37.500 0.00 0.00 0.00 3.86
2485 3567 6.936279 TGAAACTAAAGAACGAGATCAGGAT 58.064 36.000 0.00 0.00 0.00 3.24
2486 3568 7.036220 TGAAACTAAAGAACGAGATCAGGATC 58.964 38.462 0.95 0.95 38.09 3.36
2494 3576 3.050089 AGATCAGGATCTCTCCCGC 57.950 57.895 5.98 0.00 44.37 6.13
2495 3577 0.541764 AGATCAGGATCTCTCCCGCC 60.542 60.000 5.98 0.00 44.37 6.13
2496 3578 1.872197 GATCAGGATCTCTCCCGCCG 61.872 65.000 2.05 0.00 43.21 6.46
2497 3579 3.610669 CAGGATCTCTCCCGCCGG 61.611 72.222 0.00 0.00 43.21 6.13
2519 3601 2.270527 GAGCTGACCTCCAAGGCC 59.729 66.667 0.00 0.00 39.63 5.19
2520 3602 3.334054 AGCTGACCTCCAAGGCCC 61.334 66.667 0.00 0.00 39.63 5.80
2521 3603 3.650950 GCTGACCTCCAAGGCCCA 61.651 66.667 0.00 0.00 39.63 5.36
2522 3604 3.170362 CTGACCTCCAAGGCCCAA 58.830 61.111 0.00 0.00 39.63 4.12
2523 3605 1.460255 CTGACCTCCAAGGCCCAAA 59.540 57.895 0.00 0.00 39.63 3.28
2524 3606 0.610232 CTGACCTCCAAGGCCCAAAG 60.610 60.000 0.00 0.00 39.63 2.77
2525 3607 1.304464 GACCTCCAAGGCCCAAAGG 60.304 63.158 0.00 4.09 39.63 3.11
2535 3617 2.124151 CCCAAAGGCCATCGGAGG 60.124 66.667 5.01 0.00 0.00 4.30
2572 3654 3.522731 CGTCAGCGGGAGGAGGAG 61.523 72.222 0.00 0.00 33.18 3.69
2573 3655 3.151022 GTCAGCGGGAGGAGGAGG 61.151 72.222 0.00 0.00 0.00 4.30
2574 3656 3.347590 TCAGCGGGAGGAGGAGGA 61.348 66.667 0.00 0.00 0.00 3.71
2575 3657 2.364317 CAGCGGGAGGAGGAGGAA 60.364 66.667 0.00 0.00 0.00 3.36
2576 3658 1.990060 CAGCGGGAGGAGGAGGAAA 60.990 63.158 0.00 0.00 0.00 3.13
2577 3659 1.990614 AGCGGGAGGAGGAGGAAAC 60.991 63.158 0.00 0.00 0.00 2.78
2578 3660 3.032667 GCGGGAGGAGGAGGAAACC 62.033 68.421 0.00 0.00 0.00 3.27
2579 3661 1.306226 CGGGAGGAGGAGGAAACCT 60.306 63.158 0.00 0.00 43.64 3.50
2580 3662 0.032416 CGGGAGGAGGAGGAAACCTA 60.032 60.000 0.00 0.00 40.73 3.08
2581 3663 1.621622 CGGGAGGAGGAGGAAACCTAA 60.622 57.143 0.00 0.00 40.73 2.69
2582 3664 2.777913 GGGAGGAGGAGGAAACCTAAT 58.222 52.381 0.00 0.00 40.73 1.73
2583 3665 2.706723 GGGAGGAGGAGGAAACCTAATC 59.293 54.545 0.00 0.00 40.73 1.75
2584 3666 3.385115 GGAGGAGGAGGAAACCTAATCA 58.615 50.000 0.00 0.00 40.73 2.57
2585 3667 3.134985 GGAGGAGGAGGAAACCTAATCAC 59.865 52.174 0.00 0.00 40.73 3.06
2586 3668 3.775316 GAGGAGGAGGAAACCTAATCACA 59.225 47.826 0.00 0.00 40.73 3.58
2587 3669 4.375313 AGGAGGAGGAAACCTAATCACAT 58.625 43.478 0.00 0.00 40.73 3.21
2588 3670 4.790790 AGGAGGAGGAAACCTAATCACATT 59.209 41.667 0.00 0.00 40.73 2.71
2589 3671 4.884164 GGAGGAGGAAACCTAATCACATTG 59.116 45.833 0.00 0.00 40.73 2.82
2590 3672 4.273318 AGGAGGAAACCTAATCACATTGC 58.727 43.478 0.00 0.00 38.65 3.56
2591 3673 4.018050 AGGAGGAAACCTAATCACATTGCT 60.018 41.667 0.00 0.00 38.65 3.91
2592 3674 4.336713 GGAGGAAACCTAATCACATTGCTC 59.663 45.833 0.00 0.00 37.63 4.26
2593 3675 4.922206 AGGAAACCTAATCACATTGCTCA 58.078 39.130 0.00 0.00 28.47 4.26
2594 3676 5.513233 AGGAAACCTAATCACATTGCTCAT 58.487 37.500 0.00 0.00 28.47 2.90
2595 3677 6.662755 AGGAAACCTAATCACATTGCTCATA 58.337 36.000 0.00 0.00 28.47 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 1.600916 GGCTGCTGAAACGGGAAGT 60.601 57.895 0.00 0.00 0.00 3.01
79 80 2.759114 CAGGGAAGGGCTGCTGAA 59.241 61.111 0.00 0.00 0.00 3.02
92 93 4.884668 TCTAGTTAAGTTCACACCAGGG 57.115 45.455 0.00 0.00 0.00 4.45
95 96 7.959175 AGTACAATCTAGTTAAGTTCACACCA 58.041 34.615 0.00 0.00 0.00 4.17
96 97 8.828688 AAGTACAATCTAGTTAAGTTCACACC 57.171 34.615 0.00 0.00 0.00 4.16
122 124 8.397906 TCGGCATCATTTAAACTTTTCTATCAG 58.602 33.333 0.00 0.00 0.00 2.90
134 136 4.445052 CCGTACGTATCGGCATCATTTAAA 59.555 41.667 18.85 0.00 41.48 1.52
135 137 3.982701 CCGTACGTATCGGCATCATTTAA 59.017 43.478 18.85 0.00 41.48 1.52
199 213 4.320567 CGCACCGATCATTATACTCAGACT 60.321 45.833 0.00 0.00 0.00 3.24
201 215 3.611766 GCGCACCGATCATTATACTCAGA 60.612 47.826 0.30 0.00 0.00 3.27
202 216 2.663602 GCGCACCGATCATTATACTCAG 59.336 50.000 0.30 0.00 0.00 3.35
204 218 1.649171 CGCGCACCGATCATTATACTC 59.351 52.381 8.75 0.00 40.02 2.59
205 219 1.698165 CGCGCACCGATCATTATACT 58.302 50.000 8.75 0.00 40.02 2.12
206 220 0.093026 GCGCGCACCGATCATTATAC 59.907 55.000 29.10 0.00 40.02 1.47
253 267 5.065218 AGCAAACCAATTATGCTCTAAGACG 59.935 40.000 0.00 0.00 46.98 4.18
293 307 3.513119 TGTTGGCTTGCTAAATATTGGCA 59.487 39.130 10.95 10.95 45.81 4.92
294 308 4.122143 TGTTGGCTTGCTAAATATTGGC 57.878 40.909 6.70 6.70 37.69 4.52
295 309 6.037391 CCAAATGTTGGCTTGCTAAATATTGG 59.963 38.462 12.41 12.41 45.17 3.16
296 310 7.007313 CCAAATGTTGGCTTGCTAAATATTG 57.993 36.000 0.00 0.21 45.17 1.90
311 325 6.423862 CAACTTCTGATTTTGCCAAATGTTG 58.576 36.000 0.00 5.05 32.35 3.33
312 326 5.007921 GCAACTTCTGATTTTGCCAAATGTT 59.992 36.000 0.00 0.00 39.82 2.71
313 327 4.512571 GCAACTTCTGATTTTGCCAAATGT 59.487 37.500 0.00 0.00 39.82 2.71
314 328 5.025986 GCAACTTCTGATTTTGCCAAATG 57.974 39.130 0.00 0.00 39.82 2.32
320 334 5.678132 ATTTTGGCAACTTCTGATTTTGC 57.322 34.783 0.00 12.84 44.05 3.68
321 335 6.913673 CCAAATTTTGGCAACTTCTGATTTTG 59.086 34.615 14.96 3.89 45.17 2.44
322 336 7.030075 CCAAATTTTGGCAACTTCTGATTTT 57.970 32.000 14.96 0.00 45.17 1.82
323 337 6.622833 CCAAATTTTGGCAACTTCTGATTT 57.377 33.333 14.96 0.00 45.17 2.17
337 351 7.064966 AGTCTCTCAAAAAGTTGCCAAATTTTG 59.935 33.333 15.37 16.48 41.69 2.44
338 352 7.064966 CAGTCTCTCAAAAAGTTGCCAAATTTT 59.935 33.333 9.59 9.59 34.50 1.82
339 353 6.536224 CAGTCTCTCAAAAAGTTGCCAAATTT 59.464 34.615 0.00 0.00 34.50 1.82
340 354 6.044682 CAGTCTCTCAAAAAGTTGCCAAATT 58.955 36.000 0.00 0.00 34.50 1.82
341 355 5.452356 CCAGTCTCTCAAAAAGTTGCCAAAT 60.452 40.000 0.00 0.00 34.50 2.32
342 356 4.142182 CCAGTCTCTCAAAAAGTTGCCAAA 60.142 41.667 0.00 0.00 34.50 3.28
343 357 3.381272 CCAGTCTCTCAAAAAGTTGCCAA 59.619 43.478 0.00 0.00 34.50 4.52
344 358 2.951642 CCAGTCTCTCAAAAAGTTGCCA 59.048 45.455 0.00 0.00 34.50 4.92
345 359 2.287849 GCCAGTCTCTCAAAAAGTTGCC 60.288 50.000 0.00 0.00 34.50 4.52
346 360 2.358898 TGCCAGTCTCTCAAAAAGTTGC 59.641 45.455 0.00 0.00 34.50 4.17
347 361 4.354587 GTTGCCAGTCTCTCAAAAAGTTG 58.645 43.478 0.00 0.00 35.95 3.16
348 362 3.065371 CGTTGCCAGTCTCTCAAAAAGTT 59.935 43.478 0.00 0.00 0.00 2.66
349 363 2.614057 CGTTGCCAGTCTCTCAAAAAGT 59.386 45.455 0.00 0.00 0.00 2.66
350 364 2.872245 TCGTTGCCAGTCTCTCAAAAAG 59.128 45.455 0.00 0.00 0.00 2.27
351 365 2.872245 CTCGTTGCCAGTCTCTCAAAAA 59.128 45.455 0.00 0.00 0.00 1.94
352 366 2.102420 TCTCGTTGCCAGTCTCTCAAAA 59.898 45.455 0.00 0.00 0.00 2.44
353 367 1.686587 TCTCGTTGCCAGTCTCTCAAA 59.313 47.619 0.00 0.00 0.00 2.69
354 368 1.328279 TCTCGTTGCCAGTCTCTCAA 58.672 50.000 0.00 0.00 0.00 3.02
355 369 1.328279 TTCTCGTTGCCAGTCTCTCA 58.672 50.000 0.00 0.00 0.00 3.27
356 370 2.663826 ATTCTCGTTGCCAGTCTCTC 57.336 50.000 0.00 0.00 0.00 3.20
357 371 2.613977 CCAATTCTCGTTGCCAGTCTCT 60.614 50.000 0.00 0.00 0.00 3.10
358 372 1.734465 CCAATTCTCGTTGCCAGTCTC 59.266 52.381 0.00 0.00 0.00 3.36
359 373 1.813513 CCAATTCTCGTTGCCAGTCT 58.186 50.000 0.00 0.00 0.00 3.24
360 374 0.169009 GCCAATTCTCGTTGCCAGTC 59.831 55.000 0.00 0.00 0.00 3.51
361 375 0.537143 TGCCAATTCTCGTTGCCAGT 60.537 50.000 0.00 0.00 0.00 4.00
362 376 0.597568 TTGCCAATTCTCGTTGCCAG 59.402 50.000 0.00 0.00 0.00 4.85
363 377 0.597568 CTTGCCAATTCTCGTTGCCA 59.402 50.000 0.00 0.00 0.00 4.92
364 378 0.733909 GCTTGCCAATTCTCGTTGCC 60.734 55.000 0.00 0.00 0.00 4.52
365 379 0.039256 TGCTTGCCAATTCTCGTTGC 60.039 50.000 0.00 0.00 0.00 4.17
366 380 2.420628 TTGCTTGCCAATTCTCGTTG 57.579 45.000 0.00 0.00 0.00 4.10
367 381 2.557924 TGATTGCTTGCCAATTCTCGTT 59.442 40.909 0.00 0.00 44.02 3.85
368 382 2.161855 TGATTGCTTGCCAATTCTCGT 58.838 42.857 0.00 0.00 44.02 4.18
369 383 2.925578 TGATTGCTTGCCAATTCTCG 57.074 45.000 0.00 0.00 44.02 4.04
370 384 4.501071 ACATTGATTGCTTGCCAATTCTC 58.499 39.130 0.00 0.00 44.02 2.87
371 385 4.222145 AGACATTGATTGCTTGCCAATTCT 59.778 37.500 0.00 0.00 44.02 2.40
372 386 4.501071 AGACATTGATTGCTTGCCAATTC 58.499 39.130 0.00 0.00 44.02 2.17
373 387 4.546829 AGACATTGATTGCTTGCCAATT 57.453 36.364 0.00 0.00 44.02 2.32
374 388 4.441079 GCTAGACATTGATTGCTTGCCAAT 60.441 41.667 0.00 0.00 46.57 3.16
375 389 3.119388 GCTAGACATTGATTGCTTGCCAA 60.119 43.478 0.00 0.00 37.94 4.52
376 390 2.424601 GCTAGACATTGATTGCTTGCCA 59.575 45.455 0.00 0.00 30.39 4.92
377 391 2.223665 GGCTAGACATTGATTGCTTGCC 60.224 50.000 0.00 0.00 40.23 4.52
378 392 2.424601 TGGCTAGACATTGATTGCTTGC 59.575 45.455 0.00 0.00 33.25 4.01
379 393 4.707030 TTGGCTAGACATTGATTGCTTG 57.293 40.909 0.00 0.00 0.00 4.01
380 394 7.592885 AATATTGGCTAGACATTGATTGCTT 57.407 32.000 0.00 0.00 0.00 3.91
381 395 7.431249 CAAATATTGGCTAGACATTGATTGCT 58.569 34.615 0.00 0.00 0.00 3.91
382 396 6.643770 CCAAATATTGGCTAGACATTGATTGC 59.356 38.462 10.63 0.00 45.17 3.56
404 418 3.810310 CCAACTTTTGGTAACTGCCAA 57.190 42.857 0.00 0.00 45.93 4.52
422 436 5.016173 ACTAAGAGCATAATTGGTTTGCCA 58.984 37.500 0.00 0.00 44.38 4.92
423 437 5.582689 ACTAAGAGCATAATTGGTTTGCC 57.417 39.130 0.00 0.00 37.07 4.52
424 438 7.762382 ACTAACTAAGAGCATAATTGGTTTGC 58.238 34.615 0.00 0.00 33.04 3.68
433 447 9.314321 GCACTGATAAACTAACTAAGAGCATAA 57.686 33.333 0.00 0.00 0.00 1.90
434 448 8.474831 TGCACTGATAAACTAACTAAGAGCATA 58.525 33.333 0.00 0.00 0.00 3.14
435 449 7.331026 TGCACTGATAAACTAACTAAGAGCAT 58.669 34.615 0.00 0.00 0.00 3.79
436 450 6.697395 TGCACTGATAAACTAACTAAGAGCA 58.303 36.000 0.00 0.00 0.00 4.26
437 451 7.278868 ACATGCACTGATAAACTAACTAAGAGC 59.721 37.037 0.00 0.00 0.00 4.09
438 452 8.598924 CACATGCACTGATAAACTAACTAAGAG 58.401 37.037 0.00 0.00 0.00 2.85
439 453 7.549134 CCACATGCACTGATAAACTAACTAAGA 59.451 37.037 0.00 0.00 0.00 2.10
440 454 7.334421 ACCACATGCACTGATAAACTAACTAAG 59.666 37.037 0.00 0.00 0.00 2.18
441 455 7.165485 ACCACATGCACTGATAAACTAACTAA 58.835 34.615 0.00 0.00 0.00 2.24
442 456 6.707290 ACCACATGCACTGATAAACTAACTA 58.293 36.000 0.00 0.00 0.00 2.24
443 457 5.560724 ACCACATGCACTGATAAACTAACT 58.439 37.500 0.00 0.00 0.00 2.24
444 458 5.880054 ACCACATGCACTGATAAACTAAC 57.120 39.130 0.00 0.00 0.00 2.34
445 459 6.093495 GCTTACCACATGCACTGATAAACTAA 59.907 38.462 0.00 0.00 0.00 2.24
446 460 5.584649 GCTTACCACATGCACTGATAAACTA 59.415 40.000 0.00 0.00 0.00 2.24
447 461 4.396166 GCTTACCACATGCACTGATAAACT 59.604 41.667 0.00 0.00 0.00 2.66
448 462 4.396166 AGCTTACCACATGCACTGATAAAC 59.604 41.667 0.00 0.00 0.00 2.01
449 463 4.395854 CAGCTTACCACATGCACTGATAAA 59.604 41.667 0.00 0.00 0.00 1.40
450 464 3.940852 CAGCTTACCACATGCACTGATAA 59.059 43.478 0.00 0.00 0.00 1.75
451 465 3.534554 CAGCTTACCACATGCACTGATA 58.465 45.455 0.00 0.00 0.00 2.15
452 466 2.362736 CAGCTTACCACATGCACTGAT 58.637 47.619 0.00 0.00 0.00 2.90
453 467 1.812235 CAGCTTACCACATGCACTGA 58.188 50.000 0.00 0.00 0.00 3.41
454 468 0.169672 GCAGCTTACCACATGCACTG 59.830 55.000 0.00 0.00 38.54 3.66
466 480 3.058293 CCAAGTCGAACATTTGCAGCTTA 60.058 43.478 0.00 0.00 0.00 3.09
494 508 5.849604 GGTTTCTCAACGAAATTTAACGAGG 59.150 40.000 6.31 0.00 43.08 4.63
519 533 0.534877 TCGTGCAGCAACCATTGTCT 60.535 50.000 0.00 0.00 0.00 3.41
521 535 0.030638 GTTCGTGCAGCAACCATTGT 59.969 50.000 0.00 0.00 0.00 2.71
522 536 0.311790 AGTTCGTGCAGCAACCATTG 59.688 50.000 0.00 0.00 0.00 2.82
523 537 1.890876 TAGTTCGTGCAGCAACCATT 58.109 45.000 0.00 0.00 0.00 3.16
525 539 1.438651 GATAGTTCGTGCAGCAACCA 58.561 50.000 0.00 0.00 0.00 3.67
526 540 0.370273 CGATAGTTCGTGCAGCAACC 59.630 55.000 0.00 0.00 40.53 3.77
527 541 1.346365 TCGATAGTTCGTGCAGCAAC 58.654 50.000 0.00 0.00 45.65 4.17
528 542 1.992667 CTTCGATAGTTCGTGCAGCAA 59.007 47.619 0.00 0.00 45.65 3.91
529 543 1.201414 TCTTCGATAGTTCGTGCAGCA 59.799 47.619 0.00 0.00 45.65 4.41
530 544 1.584308 GTCTTCGATAGTTCGTGCAGC 59.416 52.381 0.00 0.00 45.65 5.25
531 545 1.840741 CGTCTTCGATAGTTCGTGCAG 59.159 52.381 0.00 0.00 45.65 4.41
532 546 1.466866 CCGTCTTCGATAGTTCGTGCA 60.467 52.381 0.00 0.00 45.65 4.57
533 547 1.189403 CCGTCTTCGATAGTTCGTGC 58.811 55.000 0.00 0.00 45.65 5.34
534 548 2.159612 TGACCGTCTTCGATAGTTCGTG 60.160 50.000 0.00 0.00 45.65 4.35
535 549 2.079158 TGACCGTCTTCGATAGTTCGT 58.921 47.619 0.00 0.00 45.65 3.85
541 577 1.028330 AGCCGTGACCGTCTTCGATA 61.028 55.000 14.76 0.00 39.71 2.92
648 685 2.260434 GGCACCGCTGTTCTCGTA 59.740 61.111 0.00 0.00 0.00 3.43
652 689 4.335647 CCCTGGCACCGCTGTTCT 62.336 66.667 0.00 0.00 0.00 3.01
653 690 4.643387 ACCCTGGCACCGCTGTTC 62.643 66.667 0.00 0.00 0.00 3.18
654 691 4.204028 AACCCTGGCACCGCTGTT 62.204 61.111 0.00 0.00 0.00 3.16
725 772 2.841988 AGGCGCAGAGAGGATCCC 60.842 66.667 10.83 0.00 33.66 3.85
862 926 2.540361 GCTCCCGTATATATACACCGCG 60.540 54.545 20.24 0.00 32.87 6.46
863 927 2.424601 TGCTCCCGTATATATACACCGC 59.575 50.000 20.24 15.99 32.87 5.68
864 928 3.181493 GGTGCTCCCGTATATATACACCG 60.181 52.174 20.24 8.55 37.22 4.94
865 929 4.382345 GGTGCTCCCGTATATATACACC 57.618 50.000 20.24 15.07 39.52 4.16
929 994 2.858476 TTTGGGAGGCTGGGAGCA 60.858 61.111 0.00 0.00 44.75 4.26
930 995 2.361737 GTTTGGGAGGCTGGGAGC 60.362 66.667 0.00 0.00 41.46 4.70
931 996 0.322906 GAAGTTTGGGAGGCTGGGAG 60.323 60.000 0.00 0.00 0.00 4.30
955 1020 0.768622 ATTGGTCGGTGGGTTCAGAA 59.231 50.000 0.00 0.00 0.00 3.02
971 1036 8.185003 TCTCAAATGAATGTACTGTACGATTG 57.815 34.615 12.87 10.60 0.00 2.67
972 1037 8.035394 ACTCTCAAATGAATGTACTGTACGATT 58.965 33.333 12.87 12.56 0.00 3.34
988 1066 2.092538 AGCTCCCCATCACTCTCAAATG 60.093 50.000 0.00 0.00 0.00 2.32
1282 1371 4.607293 TCAGTGCACAAGATCTTACTGT 57.393 40.909 25.04 12.69 37.42 3.55
1283 1372 5.173664 TGATCAGTGCACAAGATCTTACTG 58.826 41.667 33.31 22.22 39.07 2.74
1284 1373 5.411831 TGATCAGTGCACAAGATCTTACT 57.588 39.130 33.31 14.02 39.07 2.24
1285 1374 6.674694 ATTGATCAGTGCACAAGATCTTAC 57.325 37.500 33.31 19.65 39.07 2.34
1286 1375 6.880529 TGAATTGATCAGTGCACAAGATCTTA 59.119 34.615 33.31 26.16 39.07 2.10
1287 1376 5.708697 TGAATTGATCAGTGCACAAGATCTT 59.291 36.000 33.31 25.96 39.07 2.40
1314 1403 4.250570 GCATATACATACATGCACGAGC 57.749 45.455 0.00 0.00 45.51 5.03
1325 1414 4.080919 GTCCATCAGGCCTGCATATACATA 60.081 45.833 28.91 7.75 33.74 2.29
1605 1696 1.526575 CTCACCTGCGGCACCAAATT 61.527 55.000 0.00 0.00 0.00 1.82
1697 1805 6.816140 ACTTCAACCACATTTCGTTCATTTTT 59.184 30.769 0.00 0.00 0.00 1.94
1702 1810 4.974368 AACTTCAACCACATTTCGTTCA 57.026 36.364 0.00 0.00 0.00 3.18
1743 1859 7.254795 CGGGATAAACATTCCTTTAGTAAGCTG 60.255 40.741 0.00 0.00 33.53 4.24
1754 1872 5.174037 TCTGAAACGGGATAAACATTCCT 57.826 39.130 0.00 0.00 33.53 3.36
1756 1874 6.927294 AGATCTGAAACGGGATAAACATTC 57.073 37.500 0.00 0.00 0.00 2.67
1846 1968 1.089920 CATCGTCTTGCTTCCTTGGG 58.910 55.000 0.00 0.00 0.00 4.12
1865 1999 2.651232 CCTCGTCGGAATCGCGTC 60.651 66.667 5.77 0.00 37.27 5.19
1866 2000 4.849329 GCCTCGTCGGAATCGCGT 62.849 66.667 5.77 0.00 37.27 6.01
1868 2002 3.792053 ATGGCCTCGTCGGAATCGC 62.792 63.158 3.32 0.00 36.13 4.58
1869 2003 1.951130 CATGGCCTCGTCGGAATCG 60.951 63.158 3.32 0.00 37.82 3.34
1870 2004 2.247437 GCATGGCCTCGTCGGAATC 61.247 63.158 3.32 0.00 33.16 2.52
1871 2005 2.203070 GCATGGCCTCGTCGGAAT 60.203 61.111 3.32 0.00 33.16 3.01
1872 2006 3.664025 CTGCATGGCCTCGTCGGAA 62.664 63.158 3.32 0.00 33.16 4.30
1873 2007 4.147449 CTGCATGGCCTCGTCGGA 62.147 66.667 3.32 0.00 33.16 4.55
1874 2008 2.087462 TATCTGCATGGCCTCGTCGG 62.087 60.000 3.32 0.00 0.00 4.79
1875 2009 0.941463 GTATCTGCATGGCCTCGTCG 60.941 60.000 3.32 0.00 0.00 5.12
2024 2158 1.265568 CAAGTCAACCCGTATCGTCG 58.734 55.000 0.00 0.00 0.00 5.12
2099 2233 7.210873 AGAAATTAACTAGCTAGATGGAACCG 58.789 38.462 27.45 0.00 0.00 4.44
2111 2245 5.547181 AACAGCCGAAGAAATTAACTAGC 57.453 39.130 0.00 0.00 0.00 3.42
2164 3245 7.385267 CACATTTCATCAAAAATTGGGAGGTA 58.615 34.615 0.00 0.00 0.00 3.08
2174 3255 7.359933 GGCGAATTAAGCACATTTCATCAAAAA 60.360 33.333 7.55 0.00 36.08 1.94
2203 3284 8.125448 CCGAAGAGAAATAGATGTTCCAAATTC 58.875 37.037 0.00 0.00 0.00 2.17
2216 3297 4.160626 AGTTGGAGGTCCGAAGAGAAATAG 59.839 45.833 0.00 0.00 39.43 1.73
2218 3299 2.907042 AGTTGGAGGTCCGAAGAGAAAT 59.093 45.455 0.00 0.00 39.43 2.17
2222 3303 1.338200 CCAAGTTGGAGGTCCGAAGAG 60.338 57.143 17.60 0.00 40.96 2.85
2224 3305 0.685097 TCCAAGTTGGAGGTCCGAAG 59.315 55.000 21.05 0.00 42.67 3.79
2244 3325 1.098129 GCCCCGCTCTTCAAGATTCC 61.098 60.000 0.00 0.00 0.00 3.01
2255 3336 0.597377 CAAACAAAGTTGCCCCGCTC 60.597 55.000 0.00 0.00 0.00 5.03
2256 3337 1.326951 ACAAACAAAGTTGCCCCGCT 61.327 50.000 0.00 0.00 31.29 5.52
2258 3339 1.285578 CAACAAACAAAGTTGCCCCG 58.714 50.000 0.00 0.00 39.76 5.73
2290 3372 0.179004 TTCGGTGGATTGTTGCTGGT 60.179 50.000 0.00 0.00 0.00 4.00
2291 3373 0.958091 TTTCGGTGGATTGTTGCTGG 59.042 50.000 0.00 0.00 0.00 4.85
2292 3374 1.608590 AGTTTCGGTGGATTGTTGCTG 59.391 47.619 0.00 0.00 0.00 4.41
2293 3375 1.981256 AGTTTCGGTGGATTGTTGCT 58.019 45.000 0.00 0.00 0.00 3.91
2294 3376 3.003897 TGTTAGTTTCGGTGGATTGTTGC 59.996 43.478 0.00 0.00 0.00 4.17
2295 3377 4.822036 TGTTAGTTTCGGTGGATTGTTG 57.178 40.909 0.00 0.00 0.00 3.33
2296 3378 5.127491 TCTTGTTAGTTTCGGTGGATTGTT 58.873 37.500 0.00 0.00 0.00 2.83
2297 3379 4.710324 TCTTGTTAGTTTCGGTGGATTGT 58.290 39.130 0.00 0.00 0.00 2.71
2298 3380 5.468746 TCTTCTTGTTAGTTTCGGTGGATTG 59.531 40.000 0.00 0.00 0.00 2.67
2299 3381 5.469084 GTCTTCTTGTTAGTTTCGGTGGATT 59.531 40.000 0.00 0.00 0.00 3.01
2300 3382 4.995487 GTCTTCTTGTTAGTTTCGGTGGAT 59.005 41.667 0.00 0.00 0.00 3.41
2301 3383 4.374399 GTCTTCTTGTTAGTTTCGGTGGA 58.626 43.478 0.00 0.00 0.00 4.02
2302 3384 3.497262 GGTCTTCTTGTTAGTTTCGGTGG 59.503 47.826 0.00 0.00 0.00 4.61
2303 3385 4.124238 TGGTCTTCTTGTTAGTTTCGGTG 58.876 43.478 0.00 0.00 0.00 4.94
2304 3386 4.411256 TGGTCTTCTTGTTAGTTTCGGT 57.589 40.909 0.00 0.00 0.00 4.69
2305 3387 4.573201 TGTTGGTCTTCTTGTTAGTTTCGG 59.427 41.667 0.00 0.00 0.00 4.30
2306 3388 5.728351 TGTTGGTCTTCTTGTTAGTTTCG 57.272 39.130 0.00 0.00 0.00 3.46
2307 3389 6.202188 TCGATGTTGGTCTTCTTGTTAGTTTC 59.798 38.462 0.00 0.00 0.00 2.78
2308 3390 6.053005 TCGATGTTGGTCTTCTTGTTAGTTT 58.947 36.000 0.00 0.00 0.00 2.66
2309 3391 5.607477 TCGATGTTGGTCTTCTTGTTAGTT 58.393 37.500 0.00 0.00 0.00 2.24
2310 3392 5.209818 TCGATGTTGGTCTTCTTGTTAGT 57.790 39.130 0.00 0.00 0.00 2.24
2311 3393 6.368791 TCAATCGATGTTGGTCTTCTTGTTAG 59.631 38.462 0.00 0.00 0.00 2.34
2312 3394 6.227522 TCAATCGATGTTGGTCTTCTTGTTA 58.772 36.000 0.00 0.00 0.00 2.41
2313 3395 5.063204 TCAATCGATGTTGGTCTTCTTGTT 58.937 37.500 0.00 0.00 0.00 2.83
2314 3396 4.641396 TCAATCGATGTTGGTCTTCTTGT 58.359 39.130 0.00 0.00 0.00 3.16
2315 3397 5.385617 GTTCAATCGATGTTGGTCTTCTTG 58.614 41.667 0.00 0.00 0.00 3.02
2316 3398 4.455877 GGTTCAATCGATGTTGGTCTTCTT 59.544 41.667 0.00 0.00 0.00 2.52
2317 3399 4.003648 GGTTCAATCGATGTTGGTCTTCT 58.996 43.478 0.00 0.00 0.00 2.85
2318 3400 3.127030 GGGTTCAATCGATGTTGGTCTTC 59.873 47.826 0.00 0.00 0.00 2.87
2319 3401 3.081804 GGGTTCAATCGATGTTGGTCTT 58.918 45.455 0.00 0.00 0.00 3.01
2320 3402 2.618045 GGGGTTCAATCGATGTTGGTCT 60.618 50.000 0.00 0.00 0.00 3.85
2321 3403 1.743394 GGGGTTCAATCGATGTTGGTC 59.257 52.381 0.00 0.00 0.00 4.02
2322 3404 1.074727 TGGGGTTCAATCGATGTTGGT 59.925 47.619 0.00 0.00 0.00 3.67
2323 3405 1.472480 GTGGGGTTCAATCGATGTTGG 59.528 52.381 0.00 0.00 0.00 3.77
2324 3406 2.158559 TGTGGGGTTCAATCGATGTTG 58.841 47.619 0.00 0.00 0.00 3.33
2325 3407 2.577606 TGTGGGGTTCAATCGATGTT 57.422 45.000 0.00 0.00 0.00 2.71
2326 3408 2.577606 TTGTGGGGTTCAATCGATGT 57.422 45.000 0.00 0.00 0.00 3.06
2327 3409 5.049198 CAGATATTGTGGGGTTCAATCGATG 60.049 44.000 0.00 0.00 36.92 3.84
2328 3410 5.065914 CAGATATTGTGGGGTTCAATCGAT 58.934 41.667 0.00 0.00 36.92 3.59
2329 3411 4.450976 CAGATATTGTGGGGTTCAATCGA 58.549 43.478 0.00 0.00 36.92 3.59
2330 3412 3.565482 CCAGATATTGTGGGGTTCAATCG 59.435 47.826 0.00 0.00 36.92 3.34
2331 3413 3.319122 GCCAGATATTGTGGGGTTCAATC 59.681 47.826 7.08 0.00 36.92 2.67
2332 3414 3.299503 GCCAGATATTGTGGGGTTCAAT 58.700 45.455 7.08 0.00 38.72 2.57
2333 3415 2.733956 GCCAGATATTGTGGGGTTCAA 58.266 47.619 7.08 0.00 35.39 2.69
2334 3416 1.408127 CGCCAGATATTGTGGGGTTCA 60.408 52.381 11.84 0.00 41.87 3.18
2335 3417 1.308998 CGCCAGATATTGTGGGGTTC 58.691 55.000 11.84 0.00 41.87 3.62
2336 3418 0.106719 CCGCCAGATATTGTGGGGTT 60.107 55.000 16.38 0.00 44.59 4.11
2337 3419 0.986019 TCCGCCAGATATTGTGGGGT 60.986 55.000 16.38 0.00 44.59 4.95
2338 3420 0.250467 CTCCGCCAGATATTGTGGGG 60.250 60.000 12.70 12.70 45.43 4.96
2339 3421 0.758734 TCTCCGCCAGATATTGTGGG 59.241 55.000 7.08 0.00 35.39 4.61
2340 3422 1.138859 TGTCTCCGCCAGATATTGTGG 59.861 52.381 1.42 1.42 38.21 4.17
2341 3423 2.205074 GTGTCTCCGCCAGATATTGTG 58.795 52.381 0.00 0.00 32.08 3.33
2342 3424 1.831106 TGTGTCTCCGCCAGATATTGT 59.169 47.619 0.00 0.00 32.08 2.71
2343 3425 2.602257 TGTGTCTCCGCCAGATATTG 57.398 50.000 0.00 0.00 32.08 1.90
2344 3426 2.968574 AGATGTGTCTCCGCCAGATATT 59.031 45.455 0.00 0.00 32.08 1.28
2345 3427 2.560542 GAGATGTGTCTCCGCCAGATAT 59.439 50.000 0.00 0.00 44.20 1.63
2346 3428 1.957177 GAGATGTGTCTCCGCCAGATA 59.043 52.381 0.00 0.00 44.20 1.98
2347 3429 0.749649 GAGATGTGTCTCCGCCAGAT 59.250 55.000 0.00 0.00 44.20 2.90
2348 3430 2.193532 GAGATGTGTCTCCGCCAGA 58.806 57.895 0.00 0.00 44.20 3.86
2349 3431 4.823276 GAGATGTGTCTCCGCCAG 57.177 61.111 0.00 0.00 44.20 4.85
2356 3438 0.247736 GAGCGTTGGGAGATGTGTCT 59.752 55.000 0.00 0.00 37.42 3.41
2357 3439 0.247736 AGAGCGTTGGGAGATGTGTC 59.752 55.000 0.00 0.00 0.00 3.67
2358 3440 0.247736 GAGAGCGTTGGGAGATGTGT 59.752 55.000 0.00 0.00 0.00 3.72
2359 3441 0.460987 GGAGAGCGTTGGGAGATGTG 60.461 60.000 0.00 0.00 0.00 3.21
2360 3442 1.901085 GGAGAGCGTTGGGAGATGT 59.099 57.895 0.00 0.00 0.00 3.06
2361 3443 1.227089 CGGAGAGCGTTGGGAGATG 60.227 63.158 0.00 0.00 0.00 2.90
2362 3444 1.379977 TCGGAGAGCGTTGGGAGAT 60.380 57.895 0.00 0.00 0.00 2.75
2363 3445 2.035155 TCGGAGAGCGTTGGGAGA 59.965 61.111 0.00 0.00 0.00 3.71
2364 3446 2.154798 TTGTCGGAGAGCGTTGGGAG 62.155 60.000 0.00 0.00 36.95 4.30
2365 3447 2.204461 TTGTCGGAGAGCGTTGGGA 61.204 57.895 0.00 0.00 36.95 4.37
2366 3448 2.027625 GTTGTCGGAGAGCGTTGGG 61.028 63.158 0.00 0.00 36.95 4.12
2367 3449 2.372690 CGTTGTCGGAGAGCGTTGG 61.373 63.158 3.26 0.00 36.95 3.77
2368 3450 3.000080 GCGTTGTCGGAGAGCGTTG 62.000 63.158 12.51 0.00 36.95 4.10
2369 3451 1.859427 TAGCGTTGTCGGAGAGCGTT 61.859 55.000 12.51 9.30 36.95 4.84
2370 3452 1.859427 TTAGCGTTGTCGGAGAGCGT 61.859 55.000 12.51 3.23 36.95 5.07
2371 3453 0.731514 TTTAGCGTTGTCGGAGAGCG 60.732 55.000 7.02 7.02 36.95 5.03
2372 3454 0.714439 GTTTAGCGTTGTCGGAGAGC 59.286 55.000 0.00 0.00 36.95 4.09
2373 3455 1.719780 GTGTTTAGCGTTGTCGGAGAG 59.280 52.381 0.00 0.00 36.95 3.20
2374 3456 1.067364 TGTGTTTAGCGTTGTCGGAGA 59.933 47.619 0.00 0.00 37.56 3.71
2375 3457 1.493772 TGTGTTTAGCGTTGTCGGAG 58.506 50.000 0.00 0.00 37.56 4.63
2376 3458 2.063266 GATGTGTTTAGCGTTGTCGGA 58.937 47.619 0.00 0.00 37.56 4.55
2377 3459 1.795872 TGATGTGTTTAGCGTTGTCGG 59.204 47.619 0.00 0.00 37.56 4.79
2378 3460 3.722555 ATGATGTGTTTAGCGTTGTCG 57.277 42.857 0.00 0.00 40.37 4.35
2379 3461 4.158384 CCAATGATGTGTTTAGCGTTGTC 58.842 43.478 0.00 0.00 32.57 3.18
2380 3462 3.057596 CCCAATGATGTGTTTAGCGTTGT 60.058 43.478 0.00 0.00 32.57 3.32
2381 3463 3.190327 TCCCAATGATGTGTTTAGCGTTG 59.810 43.478 0.00 0.00 33.86 4.10
2382 3464 3.417101 TCCCAATGATGTGTTTAGCGTT 58.583 40.909 0.00 0.00 0.00 4.84
2383 3465 3.066291 TCCCAATGATGTGTTTAGCGT 57.934 42.857 0.00 0.00 0.00 5.07
2384 3466 3.956233 CATCCCAATGATGTGTTTAGCG 58.044 45.455 0.00 0.00 44.91 4.26
2394 3476 5.660864 ACGTTTTTATTCCCATCCCAATGAT 59.339 36.000 0.00 0.00 34.61 2.45
2395 3477 5.020132 ACGTTTTTATTCCCATCCCAATGA 58.980 37.500 0.00 0.00 34.61 2.57
2396 3478 5.108517 CACGTTTTTATTCCCATCCCAATG 58.891 41.667 0.00 0.00 0.00 2.82
2397 3479 4.161377 CCACGTTTTTATTCCCATCCCAAT 59.839 41.667 0.00 0.00 0.00 3.16
2398 3480 3.511934 CCACGTTTTTATTCCCATCCCAA 59.488 43.478 0.00 0.00 0.00 4.12
2399 3481 3.093057 CCACGTTTTTATTCCCATCCCA 58.907 45.455 0.00 0.00 0.00 4.37
2400 3482 2.429250 CCCACGTTTTTATTCCCATCCC 59.571 50.000 0.00 0.00 0.00 3.85
2401 3483 3.358118 TCCCACGTTTTTATTCCCATCC 58.642 45.455 0.00 0.00 0.00 3.51
2402 3484 4.095932 GTCTCCCACGTTTTTATTCCCATC 59.904 45.833 0.00 0.00 0.00 3.51
2403 3485 4.014406 GTCTCCCACGTTTTTATTCCCAT 58.986 43.478 0.00 0.00 0.00 4.00
2404 3486 3.181442 TGTCTCCCACGTTTTTATTCCCA 60.181 43.478 0.00 0.00 0.00 4.37
2405 3487 3.414269 TGTCTCCCACGTTTTTATTCCC 58.586 45.455 0.00 0.00 0.00 3.97
2406 3488 5.638596 AATGTCTCCCACGTTTTTATTCC 57.361 39.130 0.00 0.00 28.96 3.01
2407 3489 8.674607 AGAATAATGTCTCCCACGTTTTTATTC 58.325 33.333 0.00 0.00 35.68 1.75
2408 3490 8.575649 AGAATAATGTCTCCCACGTTTTTATT 57.424 30.769 0.00 0.00 35.68 1.40
2409 3491 8.575649 AAGAATAATGTCTCCCACGTTTTTAT 57.424 30.769 0.00 0.00 35.68 1.40
2410 3492 7.662258 TGAAGAATAATGTCTCCCACGTTTTTA 59.338 33.333 0.00 0.00 35.68 1.52
2411 3493 6.488683 TGAAGAATAATGTCTCCCACGTTTTT 59.511 34.615 0.00 0.00 35.68 1.94
2412 3494 6.001460 TGAAGAATAATGTCTCCCACGTTTT 58.999 36.000 0.00 0.00 35.68 2.43
2413 3495 5.556915 TGAAGAATAATGTCTCCCACGTTT 58.443 37.500 0.00 0.00 35.68 3.60
2414 3496 5.160607 TGAAGAATAATGTCTCCCACGTT 57.839 39.130 0.00 0.00 37.94 3.99
2415 3497 4.819105 TGAAGAATAATGTCTCCCACGT 57.181 40.909 0.00 0.00 0.00 4.49
2416 3498 5.235186 GTGATGAAGAATAATGTCTCCCACG 59.765 44.000 0.00 0.00 0.00 4.94
2417 3499 5.529060 GGTGATGAAGAATAATGTCTCCCAC 59.471 44.000 0.00 0.00 0.00 4.61
2418 3500 5.191522 TGGTGATGAAGAATAATGTCTCCCA 59.808 40.000 0.00 0.00 0.00 4.37
2419 3501 5.529060 GTGGTGATGAAGAATAATGTCTCCC 59.471 44.000 0.00 0.00 0.00 4.30
2420 3502 6.115446 TGTGGTGATGAAGAATAATGTCTCC 58.885 40.000 0.00 0.00 0.00 3.71
2421 3503 7.414540 GGTTGTGGTGATGAAGAATAATGTCTC 60.415 40.741 0.00 0.00 0.00 3.36
2422 3504 6.375455 GGTTGTGGTGATGAAGAATAATGTCT 59.625 38.462 0.00 0.00 0.00 3.41
2423 3505 6.404734 GGGTTGTGGTGATGAAGAATAATGTC 60.405 42.308 0.00 0.00 0.00 3.06
2424 3506 5.418840 GGGTTGTGGTGATGAAGAATAATGT 59.581 40.000 0.00 0.00 0.00 2.71
2425 3507 5.163519 GGGGTTGTGGTGATGAAGAATAATG 60.164 44.000 0.00 0.00 0.00 1.90
2426 3508 4.956075 GGGGTTGTGGTGATGAAGAATAAT 59.044 41.667 0.00 0.00 0.00 1.28
2427 3509 4.340617 GGGGTTGTGGTGATGAAGAATAA 58.659 43.478 0.00 0.00 0.00 1.40
2428 3510 3.621214 CGGGGTTGTGGTGATGAAGAATA 60.621 47.826 0.00 0.00 0.00 1.75
2429 3511 2.807676 GGGGTTGTGGTGATGAAGAAT 58.192 47.619 0.00 0.00 0.00 2.40
2430 3512 1.544537 CGGGGTTGTGGTGATGAAGAA 60.545 52.381 0.00 0.00 0.00 2.52
2431 3513 0.036164 CGGGGTTGTGGTGATGAAGA 59.964 55.000 0.00 0.00 0.00 2.87
2432 3514 0.036164 TCGGGGTTGTGGTGATGAAG 59.964 55.000 0.00 0.00 0.00 3.02
2433 3515 0.250553 GTCGGGGTTGTGGTGATGAA 60.251 55.000 0.00 0.00 0.00 2.57
2434 3516 1.373435 GTCGGGGTTGTGGTGATGA 59.627 57.895 0.00 0.00 0.00 2.92
2435 3517 1.674322 GGTCGGGGTTGTGGTGATG 60.674 63.158 0.00 0.00 0.00 3.07
2436 3518 1.710996 TTGGTCGGGGTTGTGGTGAT 61.711 55.000 0.00 0.00 0.00 3.06
2437 3519 2.332312 CTTGGTCGGGGTTGTGGTGA 62.332 60.000 0.00 0.00 0.00 4.02
2438 3520 1.896660 CTTGGTCGGGGTTGTGGTG 60.897 63.158 0.00 0.00 0.00 4.17
2439 3521 1.423794 ATCTTGGTCGGGGTTGTGGT 61.424 55.000 0.00 0.00 0.00 4.16
2440 3522 0.616371 TATCTTGGTCGGGGTTGTGG 59.384 55.000 0.00 0.00 0.00 4.17
2441 3523 2.682856 CAATATCTTGGTCGGGGTTGTG 59.317 50.000 0.00 0.00 0.00 3.33
2442 3524 2.574369 TCAATATCTTGGTCGGGGTTGT 59.426 45.455 0.00 0.00 32.95 3.32
2443 3525 3.275617 TCAATATCTTGGTCGGGGTTG 57.724 47.619 0.00 0.00 32.95 3.77
2444 3526 4.014406 GTTTCAATATCTTGGTCGGGGTT 58.986 43.478 0.00 0.00 32.95 4.11
2445 3527 3.265995 AGTTTCAATATCTTGGTCGGGGT 59.734 43.478 0.00 0.00 32.95 4.95
2446 3528 3.886123 AGTTTCAATATCTTGGTCGGGG 58.114 45.455 0.00 0.00 32.95 5.73
2447 3529 6.821665 TCTTTAGTTTCAATATCTTGGTCGGG 59.178 38.462 0.00 0.00 32.95 5.14
2448 3530 7.843490 TCTTTAGTTTCAATATCTTGGTCGG 57.157 36.000 0.00 0.00 32.95 4.79
2449 3531 7.898309 CGTTCTTTAGTTTCAATATCTTGGTCG 59.102 37.037 0.00 0.00 32.95 4.79
2450 3532 8.932791 TCGTTCTTTAGTTTCAATATCTTGGTC 58.067 33.333 0.00 0.00 32.95 4.02
2451 3533 8.842358 TCGTTCTTTAGTTTCAATATCTTGGT 57.158 30.769 0.00 0.00 32.95 3.67
2452 3534 9.151471 TCTCGTTCTTTAGTTTCAATATCTTGG 57.849 33.333 0.00 0.00 32.95 3.61
2457 3539 9.319143 CCTGATCTCGTTCTTTAGTTTCAATAT 57.681 33.333 0.00 0.00 0.00 1.28
2458 3540 8.528643 TCCTGATCTCGTTCTTTAGTTTCAATA 58.471 33.333 0.00 0.00 0.00 1.90
2459 3541 7.386851 TCCTGATCTCGTTCTTTAGTTTCAAT 58.613 34.615 0.00 0.00 0.00 2.57
2460 3542 6.755206 TCCTGATCTCGTTCTTTAGTTTCAA 58.245 36.000 0.00 0.00 0.00 2.69
2461 3543 6.340962 TCCTGATCTCGTTCTTTAGTTTCA 57.659 37.500 0.00 0.00 0.00 2.69
2462 3544 7.262048 AGATCCTGATCTCGTTCTTTAGTTTC 58.738 38.462 3.80 0.00 44.37 2.78
2463 3545 7.176589 AGATCCTGATCTCGTTCTTTAGTTT 57.823 36.000 3.80 0.00 44.37 2.66
2464 3546 6.783708 AGATCCTGATCTCGTTCTTTAGTT 57.216 37.500 3.80 0.00 44.37 2.24
2477 3559 1.872197 CGGCGGGAGAGATCCTGATC 61.872 65.000 7.31 0.00 38.41 2.92
2478 3560 1.905843 CGGCGGGAGAGATCCTGAT 60.906 63.158 7.31 0.00 38.41 2.90
2479 3561 2.519541 CGGCGGGAGAGATCCTGA 60.520 66.667 7.31 0.00 38.41 3.86
2480 3562 3.610669 CCGGCGGGAGAGATCCTG 61.611 72.222 20.56 0.00 39.14 3.86
2498 3580 3.003173 TTGGAGGTCAGCTCCCCG 61.003 66.667 20.55 0.00 40.15 5.73
2499 3581 2.674220 CCTTGGAGGTCAGCTCCCC 61.674 68.421 20.55 0.00 40.15 4.81
2500 3582 2.993853 CCTTGGAGGTCAGCTCCC 59.006 66.667 20.55 2.98 40.15 4.30
2501 3583 2.270527 GCCTTGGAGGTCAGCTCC 59.729 66.667 16.66 16.66 37.80 4.70
2502 3584 2.270527 GGCCTTGGAGGTCAGCTC 59.729 66.667 0.00 0.00 40.51 4.09
2503 3585 3.334054 GGGCCTTGGAGGTCAGCT 61.334 66.667 0.84 0.00 43.30 4.24
2504 3586 2.713531 TTTGGGCCTTGGAGGTCAGC 62.714 60.000 4.53 0.00 43.30 4.26
2505 3587 0.610232 CTTTGGGCCTTGGAGGTCAG 60.610 60.000 4.53 0.00 43.30 3.51
2506 3588 1.460255 CTTTGGGCCTTGGAGGTCA 59.540 57.895 4.53 0.00 43.30 4.02
2507 3589 1.304464 CCTTTGGGCCTTGGAGGTC 60.304 63.158 4.53 0.00 39.92 3.85
2508 3590 2.854076 CCTTTGGGCCTTGGAGGT 59.146 61.111 4.53 0.00 37.80 3.85
2518 3600 2.124151 CCTCCGATGGCCTTTGGG 60.124 66.667 21.99 12.12 0.00 4.12
2519 3601 2.830370 GCCTCCGATGGCCTTTGG 60.830 66.667 17.44 17.44 46.82 3.28
2555 3637 3.522731 CTCCTCCTCCCGCTGACG 61.523 72.222 0.00 0.00 39.67 4.35
2556 3638 3.151022 CCTCCTCCTCCCGCTGAC 61.151 72.222 0.00 0.00 0.00 3.51
2557 3639 2.455960 TTTCCTCCTCCTCCCGCTGA 62.456 60.000 0.00 0.00 0.00 4.26
2558 3640 1.990060 TTTCCTCCTCCTCCCGCTG 60.990 63.158 0.00 0.00 0.00 5.18
2559 3641 1.990614 GTTTCCTCCTCCTCCCGCT 60.991 63.158 0.00 0.00 0.00 5.52
2560 3642 2.585153 GTTTCCTCCTCCTCCCGC 59.415 66.667 0.00 0.00 0.00 6.13
2561 3643 0.032416 TAGGTTTCCTCCTCCTCCCG 60.032 60.000 0.00 0.00 38.86 5.14
2562 3644 2.265526 TTAGGTTTCCTCCTCCTCCC 57.734 55.000 0.00 0.00 38.86 4.30
2563 3645 3.134985 GTGATTAGGTTTCCTCCTCCTCC 59.865 52.174 0.00 0.00 38.86 4.30
2564 3646 3.775316 TGTGATTAGGTTTCCTCCTCCTC 59.225 47.826 0.00 0.00 38.86 3.71
2565 3647 3.803340 TGTGATTAGGTTTCCTCCTCCT 58.197 45.455 0.00 0.00 38.86 3.69
2566 3648 4.779993 ATGTGATTAGGTTTCCTCCTCC 57.220 45.455 0.00 0.00 38.86 4.30
2567 3649 4.336713 GCAATGTGATTAGGTTTCCTCCTC 59.663 45.833 0.00 0.00 38.86 3.71
2568 3650 4.018050 AGCAATGTGATTAGGTTTCCTCCT 60.018 41.667 0.00 0.00 41.20 3.69
2569 3651 4.273318 AGCAATGTGATTAGGTTTCCTCC 58.727 43.478 0.00 0.00 34.61 4.30
2570 3652 4.943705 TGAGCAATGTGATTAGGTTTCCTC 59.056 41.667 0.00 0.00 34.61 3.71
2571 3653 4.922206 TGAGCAATGTGATTAGGTTTCCT 58.078 39.130 0.00 0.00 37.71 3.36
2572 3654 5.841957 ATGAGCAATGTGATTAGGTTTCC 57.158 39.130 0.00 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.