>input_sequence_74732
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-------------------------------------ATGGGGAGCTACGGCGGAGACGATGGCGGCGTGGAGCTGACCG
AGCTGACGCTGGCGCCGCCGGGCGAGAGGGCGCGGAGGGCGAGGCGGGCGAGGAAGAGCGTCGAGGCGGCGGCGTTCGTG
AAGGTGAGCATGGACGGGACGCCGTACCTGCGCAAGGTGGACGTGGCGGCCTACGGCGACTACCTCGAGCTCCTCCAGGA
GCTCAACGCCATGTTCTACTGCTGCTCCATCGGTAAGCAACCAAAGCTTCAGCATCTCAAATGGACA-----------GC
CATGTTAAGTACAGTAAGATCTTGTGCACTGATCAATTCAATGCTCGTGCATGTATGTATA--TGCAGGCCTGATGGACG
GGTACGGCCAGTGGGAGCACGCCGTGGTGTACGAGGACGGCGACGGCGACTGGATGCTCGTCGGCGACGTGCCCTGGGAG
TAAGCACCACCGCACCAATTGTTCGATCGCGCCGTCGCACTATGCAATAATGCAAATGTTCTGATCTCGAACTGTTGTGT
GAATCTGCAGGATGTTCGTGTGTTCGTGCAGGCGGATGAGAGTGATGCGAGCGTGCGAGGCGAGAGGGCTGAGCGCCAAC
GCGTGA--------------------------------------------------------------------------
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>chr5B_1_TraesCS5B01G317800
GGTGGCGGCTTGACCGGCTCCATCGCCGGCTACCGTTAACGTGTTGGCCAGGCTTGATATTCCATGGGCGACTTCCCGTT
TCAGCAGCCCTTCCCTG-GTGTGAACTTAACTAGATTGTACTTCTGATAGAAAAGTTTAAATGATGCCGATACGTACGGT
TAACGTGTTGAATAGTGTAT------------AAAGATGCCTGTGGACAGTCAGTCTGAGTATAATGATCGGTGCGCGCA
AGTTGTGGCCGCGCGCGGTACGTCGTCGTCTTAGAGCATAATTGGTTTGCTACCAACATTTGGCATTGCCAATATTTAGC
AAGCCAACATTTGGCAAAATCAGAAGTTGCCAAAATTTGGCAACTTTTTGAGAGACTGGCAACGAGAATTGGCAAGCAAT
CAATGTCTAGCCAATATTTGGCAGTTACCAAAAGTTGGCAAACCAATTATGCTCTTAGTTAGTTTATCAGTGCATGTGGT
AAGCTGCAAATGTTCGACTTGGCATTGCCTCGTTAAATTTCGTTGAGAAACCAGACAATGGTTGCTGCA-----------
-----------CGAACTATCGAAGACG-GTCACGGCTGAGCTGATTTTCTTTGTTTAGTGGTGACCACGGAGGCAGCCAC
GCAGGAGACCGGGGAGTCGACGTGGCGGCCCGCCGGTCGGGTCCTACGAGAACAGCGGTGCCAGGGTTCGTTGCCGGCCC
GCACCCAACCCGACCGCCGT----------CCGCAGCCCCTGTCCCCGCCCGG-----GATCCTCTCTGCGCCTGCGCGC
AACCGCCGGATGACCCATACCACGCCGCCTCCTCGCTGGCGGGCACCACCCTGCTCCCCCTCCCC-----CTCCCCGCCT
CAGAGGATCGGGTAGCGCACGT-TC------GTACCAACGGCCGGCGCGGTGTATATATACGGGAGCACCGGCCAGCCAA
AGCTT-GCCATCACGACGACGACGGGCGCCTTCTGCTCCCAGCCTCCCAAACTTCCAGCTTCTGAACCCACCGACCAATC
GTACAGTACAT-------------TCATTTGAGAGTGATGGGGAGCTACGGCGGAGACGATGGCGGCGTGGAGCTGACCG
AGCTGACGCTGGCGCCGCCGGGCGAGAGGGCGCGGAGGGCGAGGCGGGCGAGGAAGAGCGTCGAGGCGGCGGCGTTCGTG
AAGGTGAGCATGGACGGGACGCCGTACCTGCGCAAGGTGGACGTGGCGGCCTACGGCGACTACCTCGAGCTCCTCCAGGA
GCTCAACGCCATGTTCTACTGCTGCTCCATCGGTAAGCAACCAAAGCTTCAGCATCTCAAATGGACA-----------GC
CATGTTAAGTACAGTAAGATCTTGTGCACTGATCAATTCAATGCTCGTGCATGTATGTATA--TGCAGGCCTGATGGACG
GGTACGGCCAGTGGGAGCACGCCGTGGTGTACGAGGACGGCGACGGCGACTGGATGCTCGTCGGCGACGTGCCCTGGGAG
TAAGCACCACCGCACCAATTGTTCGATCGCGCCGTCGCACTATGCAATAATGCAAATGTTCTGATCTCGAACTGTTGTGT
GAATCTGCAGGATGTTCGTGTGTTCGTGCAGGCGGATGAGAGTGATGCGAGCGTGCGAGGCGAGAGGGCTGAGCGCCAAC
GCGTGATGACAGACCAATTTGGTGCCGCAGGTGAGGATTCGCCAAAAGTCTCACAGGC--TAACAGAACTGCAGGGTCTT
CATTAAAAAAAA-GAATTACATATTTAA--------------AAAAAAATGAACGAAATGTGGTTGAAGTTTGACCTGAT
A--CTAAACTGA------CAGCT--TACTAAAGGAATGTTTATCCCGTTTCAGATCTTGGGT----ACGTGTAGATATGA
TCTGAACCTCTTGCATGTCGCTCCAGTGGGTGTGACAGCGATGAGGACCCAAGGAAGCAAGA------------CGATGA
CGCGATTCCGACGAGGCCATGCAGATACGATCCCGTACCTCTACGCCAAGATCGACCGGCGTGCCATCAGTTGGGAATAA
AATGTTGGTTGACTAGGATAAAAATATAGTTTCGCCGATATGAGCCTCATCTCATCTTGTTGCTTCTGGCATGAGGCCGA
CGATACGGGTTGACTTGGCGAGATCCCAGTATTCTAGTACTGCTAGTGTAGTTCAATGCCTCATCAATCCTTCGGTTCCA
TCTAG---------------------------------------------------------------------------
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-------------------------------------------CTAGTTAATTTCTTCGGCTGTTTGTCACATGTACATG
GAT-----------------------------CAAGAGTTTGTGTACCTCCCAATTTTTGATGAAATGTGCTTAATTCGC
CTTGAATTTGGAACATCTATTTCTCTTCGGACCTCCAACTTGGAGGAATCTTGAAGAGCG-GGGCAACTTTGTTTGTTGT
ATTCATTGTTGACCAGCAACAATCCACCGAAACTAACAAGAAGACCAACATCGATTGAACCCCACAATATCTGGCGGAGA
CACATCTCCCAACGCTCTCCGACAACGCTAAACACATCATTGGGATGGGAATAAAAACGTGGGAGACATTATTCTTCATC
ACCACAACCCCGACCAAGATATTGAAACTAAAGAACGAGATCAGGATCTCTCCCGCCGGCGGGGAGCTGACCTCCAAGGC
CCAAAGGCCATCGGAGGCGAGGCGGACTGGCGGCGGCGTCAGCGGGAGGAGGAGGAAACCTAATCACATTGCTCATA
>chr5D_1
GGTGGCGGCTTGACCGGCTCCATCGCCGGCTACCGTTAACGTGTTGGCCAGGCTTGATATTCCATGGGCGGCTTCCCGTC
TCAGCAGCCCTTTCCCTTGTGTGAACTTAACTAGATTGTACTTGTGATAGAAAAGACTAAATGATGCCGATACGTACGGT
TAACGTGTTGAATAGTGTATACTGTACTTCACAAAGATGCCTGTGGACAGTCTGAGTA--TATAATGATCGGTGTGCGCA
AGTTGTGGCG----GCGGTACGTCGTGGTCTTACTTAGTTT---------------------------------------
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--------------------------------------------------------------------AGTGCATGTGG-
AAGCTGCAAATGTTCGACTTGGCATTGTCTCGTTAAATTTCGTCTACTCTACCGTGCAATTGATAGCTGCTGCATCGAAC
TATCGAACAATCGAACAATCGAAGACGAGTCACGGCTGAGCTGATTT-----GTTTAGTGGTGACCACGGAGGCAGCCAC
GCAGGAGACCGGGGAGTCGACGTGGCGA---GCCGGTCGGGTCCCACGGCGACAGCGGTGCCAGGGTTCGTTGCCGGCCC
GCACCCAACCCGACCGCCGC----------CCGCAGCCCCTGTCCCCGCCCCGCTTCGGATCCTCT------CTGCGCGC
AACCGCCGTATAACCCACACCACGCCGCCAT---GCTGGCCGGCA----------------CCAC-----CTCCCCGCCT
CAGGGGATCAGGTAGCACACGTAGTATCGTAGTACCAACGGCCGG-----TGTATATATACGGCAGCACCGGCCAGCCAA
AGCTC-GCCATTC-----ACGACACACGCCTTCCATTCCCAGCCTCCCCAACTTCCAGCCTCTGAACCCACCGACTGATC
GTATAGTAGGAGTAGTACATTGCGTAATTTGAGAGTGATGGGGAGCTATGGCGGAGACGATGGCGGCGTGGAGCTGACCG
AGCTGACGCTGGCGCCGCCCGGCGAGAGGGCGCGGAGGGCGAGGCGGGCGAGGAAGAGCGTCGAGGCGGCGGCGTTCGTG
AAGGTGAGCATGGACGGGACGCCGTACCTGCGCAAGGTGGACGTGGCGGCCTACAGCGACTACCTCGAGCTCCTCCAGGA
GCTCAACGCCATGTTCTACTGCTGCTCCATCGGTAAGCAACCAAAGCTTCACCATGTCAAATGGACA-----------GC
CATGTCAAATG-----AGATTTTGTGCACTGATCAATGC---------GCGTGCATGCTTGTCTGCAGGTCTGATGGACG
GGTACGGCCAGTGGGAGCACGCCGTGGTGTACGAGGACGGCGACGGCGACTGGATGCTCGTCGGCGACGTGCCCTGGGAG
TAAGCACCACCGCACCAATTGTTCGATCGCGTCGTCGCACTATGCAATAATGCAAATGTTCTGACCTAGAACTGTTGTGT
GAATCTGCAGGATGTTCGTGTGTTCGTGCAGGCGGATGAGAGTGATGCGAGCGTGCGAGGCGAGAGGGCTGAGCGCCAAC
GCGTGA---CAGACCGATTTCCTGCTGCAGGTGAGGATTCGGCAAAAGTCCACCAGACAGTAACAGAATTGCAGGGTCTT
CACTAAATAAACAGAATTGCAGAAATATGTTTGATGTTTTTTTTTAAATCGACCAAAATGTGGTTGAAGTTTGACCTGAT
A--CTAAACTGA------TAGCTTATACTAATGAAATTCTTATCCGGTTTCAGATCTTGGGTACGTACGTGTAGATATGA
TCTGAACCTCTTGCATGTCGCTCCAGTGGGTGTGACAGCGATGAGGAACCAAGGAAGCAAGA------------CGATTC
T--------GACGAGGCCATGCAGATACGATCCCGTACCTCTACGCCAAGATCGACCGGCGTGTCATCGGTTGGGAATAA
AATGTTGGTTGACTAGGATAAAAATATAGTTTCGCCGATATGAGCCTCATCTCATCTTGTTGCTTCTGGCATGAGGCTGA
CGATACGGGTTGACTTGGCGAGATCCCAGTATTCTAGTACTGCTAGTGTAGTTCAATGCCTCATCGATCCTTGGGTTCCA
TCTACGTAGTTAATTTCTTCGGCTGTTTGTCACATGTACATGGATCAAGAGTTTGTGTACCGCCCAAATTTTGATGAAAT
GTGCTTAATTCGCCTCGAATTTGGAACATCTATTTTTGTTCGGACCTCCAACTTGGAGGAATCTTGAAGGGCGGGGCAAC
TTTGTTTGTTGTGTTCATTGTTGACCAGCGATAATCCACCGAAACTAACCAGAAGACCAGCACCGATTGAATCTCACAAG
ATCTGACGGACACACGCCTCCCCACGCGAGCAACGCTAAACGCATCATCAGGGCGGGTACCGAAATATGGAAGACATTAT
TTCTGTCGAGGGACATCTCTGTCACCACAACCCCAACCAAGACACCAAAACTAAAGAACGAGATCGGGATCTCTCCTGCC
GAGCCGACGTGGAGCTGACCTCCAAGGCCCAAAGGCCATCGAAGGCGAGGCGGACCGGCGGCGGCGCCAACGGGAGGAGG
AGAAAACCTAATCACATGGCTCATAAGGTCGGATGTGTGCGCGCGTGTATTTATAGGGATGAGTGTATGTGCGCATGTGT
GAGCATCTGCCTTTTATATTGTATTCAAAAACCTAATTGCATGAAAGTTCTTTCGTGACGAGGAAAGAACGGACATGTAA
CCTTAGAGCATCTCCAACACGTGACGAGAAACCAAGGAAGACGATGATGCGATTCTGACGAGGCCACGCAGATATGATCC
CGTACCTCTACGCAAAGATCGACCAGCGTGCCATTAATTGCGAATAAAATGTTGGTTGACTAGGATAAAAATATAGTTTG
GCCGATATGAGCCTCATCTTGTTTGCTTCTCGCATGAGGCTGACGATACGGTTGACTTGGCAAGATCCCAATATTCTAGT
ACTGCTAGTGTAGTTCCATGCCTCGTCGATCCTTGGGTTCAATCTAGTTAATTTCTTCGGCTGTTTTGTCACAT------
----------------------GTACATGGATCCAGAGTTTGTGCACCTCCCAAATTTTGATGAAATGTGCTTAATTCGC
CTTAAATTTGGAACATGTTTTTTTGTTCGGACCTCCAACTTGTAAGAATCTTGAATTGAGCGGGCAACTTTGTTTGTTGG
GTTCATTGTTG---------------------------------------------------------------------
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>chr5A_551
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-------------------------CG-GTCACGCCTGAGCTGATTT-----GTTTAGGGGTGACCACGGAGGCAGCCAC
GCAGGAGACCGGGGCGTCGACGTGGCGGGCCGCCGGTCGGGTCCCACGGCGACAGCGGTGCCAGGGTTCGTTGCCGGACC
GCACCCAACCCGACCGCCGCCCGCCAGGGTCCGCAGCCCCTGTCCCCGCCCCG-----GATCCTCT------CTGCGCGC
AACCGCCGGATGACCCATACCACGCCGCCTCCTCGCTGGCCGGCACCACCCTGCTCCCCCTCCCCTCCTCCTACCCGGCA
CAGAGGATCGGGTAGCTCACGTATC------GTACCAACGGCCGG-----TGTATATATACGGCAGCACCGGCCAGCCAA
AGCTTTGCCATTC-----ACGACCCACGCCTTCCATTCCTAGTGTCCCAAACTTCCAGCCTCTGAACCCACCGACTGATC
GTACAGTACAT-------------TAATTTGAGAGTGATGGGTAGCTATGGTGGAGACGATGGCGGCGTGGAGCTGACCG
AGCTGACGCTGGCGCCGCCGGGCGAGAGGGCGCGGAGGGCGAGGCGGGCGAGGAAGAGCGTCGAGGCGGCGGCGTTCGTG
AAGGTGAGCATGGACGGGACGCCGTACCTGCGCAAGGTGGACGTGGCGGCCTACGGCGACTACCTCGAGCTCCTCCAGGA
GCTCAACGCCATGTTCTACTGCTGCTCCATCGGTAAGCAACCAAAGCTTCAGCATATCGATCGATCCACCATCTTTTGGC
CATGTTAAGG----------TTTGTGCACTGACGCGCGC---------GCATGCATGTATA--TGCAGGCCTGATGGACG
GGTACGGCCAGTGGGAGCACGCCGTGGTGTACGAGGACGGCGACGGCGACTGGATGCTCGTCGGCGACGTGCCCTGGGAG
TAAGCACCACCGCACCAATTGTTGGATCGCGTCGTCGCACTATGCAATAATGCAAATGTTCTGATCTCGAACTGTTGTGT
GAATCTGCAGGATGTTCGTGTGTTCGTGCAGGCGGATGAGAGTGATGCGAGCGTGCGAGGCGAGAGGGCTGAGCGCCAAC
GCGTGA---CGGACCTATTTGGTGCCGCAGGTGAGAATTCGCCAAAAGTCTCACAGGC--TAACAGAATTGCAGGGTCTT
CATTAAAAAAAT-GAATTACAGAAATATGTTTGATTTTTTTTAAGAAAACGAACGATATGTGGTTGAAGTTTGACCTGAT
ATACTAAACTGATAGGAGTAGCTTATACTAATAAAATGTTTATCCCGTTTCAGATCTTCGGTG----CGTGTAGATATGA
TCTGAAC--CTTGCATGTCGCTCCAGTGGGTGTGACAGCGATGAGGAACCAAGGAAGCAAGGAAGACGATGGCGCGATTC
T--------GACGAGGCCATGCAGATACGATCCCGTACCTCTAATCCAAGATCGACCGGCGTGCCATCAGTTGGGAATAA
AATGTTGGTTGACTTGGATAAAAATATAGTTTG-----------------------------------------------
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GCCGATATGAGCCTCATCTTGTTTGCTTCTCGCATGAGGCTGACGATACGGTTGACTTGGCAAGATCCCAATATTCTAGT
ACTGCTAGTGTAGTTCCATCCCTCGTCGATCCTTGGGTTCCATCTAGTTAATTTCTTCGGCTGTTTGTCACATGTACATG
GATCACCTCGCAAAAAAAAAAGGTACATGGATCAAGAGTTTGTGCACCTCCCAAATTTTGATGAAATGTGCTTAATTCGC
CTTAAATTTGGAACATATTTTTTTGCTCGGACCTCCAACTTGGAAGAATCTTGAATTGAGCGGGCAACTCTGTTTGTTGG
GTTCATTGTTG---------------------------------------------------------------------
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>SNPs
----------------------------------------------------------------------S--------S
------------S--SS--------------------------S-----------SS-----------------------
----------------------------------------------------S-SS-SSS--------------S-----
---------SSSSS------------S------SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S
---------------------------S---------------SS-SSSSS-S-SSS-SSSSSSSSSSS-----------
----------------S------------------------------SSSSS----------------------------
----------------------------S---------------S---SSS-----------------------------
-------------------S-------------------------------S--------------SSSSSS--------
----------------------------------------S---------------------------------------
----------------S----------------------------SSSSS-------------S----------------
-----------SSSSSSS-----SSS-------SSS-----------------------S---------------SS---
-------------------------S----------------------S-------------------------------
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-------------------------------------------------------S------------------------
----------SSSSSS----S----------------S-SSSSSSSSS-----S--------------------------
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-------------------------------S------------------------------------------------
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------SSS------S----------------------------------------------------S-----------
-----------S---------S-SS--S----------------S----S------------------------------
------------------S------------S-S----------------------------------------------
-----------------------------------------------S------------------------------SS
SSSSSSSSS-----------------------------------------------------------------------
-----------------------------------------------------------------------------S--
-----------------------------------------------------------------S------S-------
----S---------------------------------------------------------------------------
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--------------------------------------------S---------S-------------------------
---S------------S-S---S-S-------------------S----------SS-S--------------------S
S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_398
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----------------------------------------------------------GCAACGAGAATTGGCAAGCA--
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>reverse_3418
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---------------------------------------------------------AACCCCACAATATCTGGCGG---
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