Multiple sequence alignment - TraesCS5B01G310000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G310000 chr5B 100.000 3020 0 0 1 3020 491996052 491993033 0.000000e+00 5578.0
1 TraesCS5B01G310000 chr5B 80.440 455 71 14 1190 1633 680580526 680580973 6.240000e-87 331.0
2 TraesCS5B01G310000 chr5B 89.011 91 10 0 2711 2801 655043304 655043214 2.460000e-21 113.0
3 TraesCS5B01G310000 chr5B 79.200 125 22 4 2472 2592 364133960 364134084 1.930000e-12 84.2
4 TraesCS5B01G310000 chr5B 83.929 56 8 1 2371 2426 440024449 440024503 5.000000e-03 52.8
5 TraesCS5B01G310000 chr5D 93.563 1569 66 19 785 2342 410242265 410240721 0.000000e+00 2305.0
6 TraesCS5B01G310000 chr5D 80.778 437 66 13 1190 1620 539014515 539014939 2.900000e-85 326.0
7 TraesCS5B01G310000 chr5D 92.442 172 9 2 2852 3020 410240452 410240282 3.010000e-60 243.0
8 TraesCS5B01G310000 chr5D 76.601 406 55 31 175 565 289724270 289723890 1.430000e-43 187.0
9 TraesCS5B01G310000 chr5D 84.530 181 25 3 2433 2611 410240607 410240428 3.090000e-40 176.0
10 TraesCS5B01G310000 chr5A 92.385 1589 86 18 783 2349 521745051 521743476 0.000000e+00 2231.0
11 TraesCS5B01G310000 chr5A 88.764 89 10 0 2716 2804 324486983 324487071 3.180000e-20 110.0
12 TraesCS5B01G310000 chr5A 88.636 88 10 0 2713 2800 214955950 214956037 1.140000e-19 108.0
13 TraesCS5B01G310000 chr5A 79.130 115 21 3 2480 2592 410506295 410506408 3.230000e-10 76.8
14 TraesCS5B01G310000 chr5A 81.000 100 16 3 2474 2571 635955552 635955454 3.230000e-10 76.8
15 TraesCS5B01G310000 chr4A 79.780 455 74 14 1190 1633 629487142 629486695 6.280000e-82 315.0
16 TraesCS5B01G310000 chr4A 92.941 85 6 0 2716 2800 197241208 197241292 1.140000e-24 124.0
17 TraesCS5B01G310000 chr4A 88.043 92 11 0 2713 2804 561631969 561632060 3.180000e-20 110.0
18 TraesCS5B01G310000 chr4A 91.489 47 4 0 2672 2718 507475954 507475908 6.990000e-07 65.8
19 TraesCS5B01G310000 chr2B 98.286 175 3 0 1 175 181755229 181755055 1.050000e-79 307.0
20 TraesCS5B01G310000 chr2B 97.727 176 4 0 1 176 176251919 176251744 1.360000e-78 303.0
21 TraesCS5B01G310000 chr2B 77.143 315 42 22 255 557 486590460 486590164 4.030000e-34 156.0
22 TraesCS5B01G310000 chr2B 75.245 408 57 31 175 562 135468232 135468615 1.450000e-33 154.0
23 TraesCS5B01G310000 chr2B 72.846 534 97 39 209 727 182129432 182128932 4.060000e-29 139.0
24 TraesCS5B01G310000 chr2B 87.234 94 11 1 2712 2804 324149441 324149534 4.120000e-19 106.0
25 TraesCS5B01G310000 chr2B 82.292 96 15 2 459 553 348015710 348015804 6.940000e-12 82.4
26 TraesCS5B01G310000 chr2B 90.741 54 5 0 2374 2427 68141109 68141056 4.180000e-09 73.1
27 TraesCS5B01G310000 chrUn 97.714 175 4 0 1 175 59805261 59805087 4.890000e-78 302.0
28 TraesCS5B01G310000 chrUn 97.714 175 4 0 1 175 119206117 119206291 4.890000e-78 302.0
29 TraesCS5B01G310000 chrUn 100.000 28 0 0 2400 2427 94750526 94750499 5.000000e-03 52.8
30 TraesCS5B01G310000 chr6D 97.714 175 4 0 1 175 459066344 459066518 4.890000e-78 302.0
31 TraesCS5B01G310000 chr1B 97.714 175 4 0 1 175 229946054 229945880 4.890000e-78 302.0
32 TraesCS5B01G310000 chr1B 93.500 200 11 2 1 200 83410121 83409924 2.280000e-76 296.0
33 TraesCS5B01G310000 chr1B 91.011 89 8 0 2712 2800 391911509 391911597 1.470000e-23 121.0
34 TraesCS5B01G310000 chr1B 82.192 73 13 0 2472 2544 245953851 245953923 2.510000e-06 63.9
35 TraesCS5B01G310000 chr1B 100.000 28 0 0 2397 2424 637493865 637493838 5.000000e-03 52.8
36 TraesCS5B01G310000 chr7B 97.175 177 5 0 1 177 3229888 3230064 1.760000e-77 300.0
37 TraesCS5B01G310000 chr7B 90.995 211 16 1 1 208 149426751 149426541 6.370000e-72 281.0
38 TraesCS5B01G310000 chr2D 85.271 258 32 6 1190 1442 520537022 520536766 8.300000e-66 261.0
39 TraesCS5B01G310000 chr2D 90.000 90 9 0 2714 2803 15832094 15832005 1.900000e-22 117.0
40 TraesCS5B01G310000 chr2D 77.674 215 30 11 334 544 413267428 413267228 6.840000e-22 115.0
41 TraesCS5B01G310000 chr2A 78.082 292 44 14 274 557 580279516 580279237 1.860000e-37 167.0
42 TraesCS5B01G310000 chr4D 75.359 418 62 29 174 576 455484054 455483663 2.410000e-36 163.0
43 TraesCS5B01G310000 chr4D 85.294 68 8 2 2476 2542 22952573 22952507 5.400000e-08 69.4
44 TraesCS5B01G310000 chr1A 88.235 102 12 0 2702 2803 242063707 242063606 4.090000e-24 122.0
45 TraesCS5B01G310000 chr1A 82.192 73 13 0 2472 2544 201863232 201863304 2.510000e-06 63.9
46 TraesCS5B01G310000 chr3D 71.843 483 91 31 273 742 569536906 569536456 2.480000e-16 97.1
47 TraesCS5B01G310000 chr3D 90.476 42 3 1 2383 2424 143246467 143246507 2.000000e-03 54.7
48 TraesCS5B01G310000 chr6B 80.645 93 14 4 2500 2590 135139952 135139862 5.400000e-08 69.4
49 TraesCS5B01G310000 chr4B 83.077 65 9 2 2480 2544 93286435 93286373 1.170000e-04 58.4
50 TraesCS5B01G310000 chr4B 100.000 31 0 0 2397 2427 97892839 97892809 1.170000e-04 58.4
51 TraesCS5B01G310000 chr1D 100.000 31 0 0 2397 2427 360473049 360473079 1.170000e-04 58.4
52 TraesCS5B01G310000 chr3B 87.500 48 6 0 2376 2423 165837099 165837052 4.210000e-04 56.5
53 TraesCS5B01G310000 chr3A 86.275 51 6 1 2376 2426 173932103 173932152 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G310000 chr5B 491993033 491996052 3019 True 5578 5578 100.000000 1 3020 1 chr5B.!!$R1 3019
1 TraesCS5B01G310000 chr5D 410240282 410242265 1983 True 908 2305 90.178333 785 3020 3 chr5D.!!$R2 2235
2 TraesCS5B01G310000 chr5A 521743476 521745051 1575 True 2231 2231 92.385000 783 2349 1 chr5A.!!$R1 1566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
641 642 0.027979 CATGGTATTGCGTTCGCTGG 59.972 55.0 17.63 0.00 0.0 4.85 F
642 643 0.107897 ATGGTATTGCGTTCGCTGGA 60.108 50.0 17.63 5.09 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1998 2006 0.251386 ACTCTTCGGAGCTGGAGTCA 60.251 55.000 0.00 0.00 45.43 3.41 R
2282 2302 1.665916 CCGAGTGCACAGGACAGTG 60.666 63.158 22.28 2.34 42.37 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.539825 AACTAACAAAATGTTAATGCATGTCAA 57.460 25.926 0.00 0.00 41.70 3.18
27 28 9.195411 ACTAACAAAATGTTAATGCATGTCAAG 57.805 29.630 0.00 0.00 41.70 3.02
28 29 9.409312 CTAACAAAATGTTAATGCATGTCAAGA 57.591 29.630 0.00 0.00 41.70 3.02
29 30 8.659925 AACAAAATGTTAATGCATGTCAAGAA 57.340 26.923 0.00 0.00 39.09 2.52
30 31 8.659925 ACAAAATGTTAATGCATGTCAAGAAA 57.340 26.923 0.00 0.00 0.00 2.52
31 32 9.107177 ACAAAATGTTAATGCATGTCAAGAAAA 57.893 25.926 0.00 0.00 0.00 2.29
32 33 9.932699 CAAAATGTTAATGCATGTCAAGAAAAA 57.067 25.926 0.00 0.00 0.00 1.94
43 44 9.361315 TGCATGTCAAGAAAAATTATCTCATTG 57.639 29.630 0.00 0.00 0.00 2.82
44 45 9.577110 GCATGTCAAGAAAAATTATCTCATTGA 57.423 29.630 0.00 0.00 0.00 2.57
67 68 9.834628 TTGAATTCGTATTTGAACATAGTTTCC 57.165 29.630 0.04 0.00 0.00 3.13
68 69 9.004717 TGAATTCGTATTTGAACATAGTTTCCA 57.995 29.630 0.04 0.00 0.00 3.53
69 70 9.834628 GAATTCGTATTTGAACATAGTTTCCAA 57.165 29.630 0.00 0.00 0.00 3.53
95 96 9.462174 AAAATATAATATTTGGTGACATGCGTG 57.538 29.630 3.82 3.82 42.32 5.34
96 97 7.977789 ATATAATATTTGGTGACATGCGTGA 57.022 32.000 14.17 0.00 42.32 4.35
97 98 6.691754 ATAATATTTGGTGACATGCGTGAA 57.308 33.333 14.17 0.00 42.32 3.18
98 99 2.704725 ATTTGGTGACATGCGTGAAC 57.295 45.000 14.17 10.22 42.32 3.18
99 100 1.383523 TTTGGTGACATGCGTGAACA 58.616 45.000 14.17 9.53 42.32 3.18
100 101 1.603456 TTGGTGACATGCGTGAACAT 58.397 45.000 14.17 0.00 42.32 2.71
101 102 1.603456 TGGTGACATGCGTGAACATT 58.397 45.000 14.17 0.00 33.40 2.71
102 103 1.952990 TGGTGACATGCGTGAACATTT 59.047 42.857 14.17 0.00 33.40 2.32
103 104 2.360483 TGGTGACATGCGTGAACATTTT 59.640 40.909 14.17 0.00 33.40 1.82
104 105 2.725723 GGTGACATGCGTGAACATTTTG 59.274 45.455 14.17 0.00 0.00 2.44
105 106 3.371168 GTGACATGCGTGAACATTTTGT 58.629 40.909 14.17 0.00 0.00 2.83
106 107 3.796178 GTGACATGCGTGAACATTTTGTT 59.204 39.130 14.17 0.00 44.37 2.83
107 108 4.973051 GTGACATGCGTGAACATTTTGTTA 59.027 37.500 14.17 0.00 41.28 2.41
108 109 5.115472 GTGACATGCGTGAACATTTTGTTAG 59.885 40.000 14.17 0.00 41.28 2.34
109 110 5.181690 ACATGCGTGAACATTTTGTTAGT 57.818 34.783 14.17 0.00 41.28 2.24
110 111 5.587289 ACATGCGTGAACATTTTGTTAGTT 58.413 33.333 14.17 0.00 41.28 2.24
111 112 6.039616 ACATGCGTGAACATTTTGTTAGTTT 58.960 32.000 14.17 0.00 41.28 2.66
112 113 7.197017 ACATGCGTGAACATTTTGTTAGTTTA 58.803 30.769 14.17 0.00 41.28 2.01
113 114 7.702772 ACATGCGTGAACATTTTGTTAGTTTAA 59.297 29.630 14.17 0.00 41.28 1.52
114 115 8.698854 CATGCGTGAACATTTTGTTAGTTTAAT 58.301 29.630 0.00 0.00 41.28 1.40
115 116 8.276060 TGCGTGAACATTTTGTTAGTTTAATC 57.724 30.769 0.00 0.00 41.28 1.75
116 117 8.132362 TGCGTGAACATTTTGTTAGTTTAATCT 58.868 29.630 0.00 0.00 41.28 2.40
117 118 9.601971 GCGTGAACATTTTGTTAGTTTAATCTA 57.398 29.630 0.00 0.00 41.28 1.98
133 134 8.592809 AGTTTAATCTATGGTCAAAATTTGGCA 58.407 29.630 12.62 0.00 36.88 4.92
134 135 8.655970 GTTTAATCTATGGTCAAAATTTGGCAC 58.344 33.333 12.62 1.03 36.88 5.01
135 136 4.433186 TCTATGGTCAAAATTTGGCACG 57.567 40.909 12.62 0.00 36.88 5.34
136 137 4.075682 TCTATGGTCAAAATTTGGCACGA 58.924 39.130 12.62 0.00 36.88 4.35
137 138 3.742433 ATGGTCAAAATTTGGCACGAA 57.258 38.095 12.62 0.00 36.88 3.85
138 139 3.526931 TGGTCAAAATTTGGCACGAAA 57.473 38.095 12.62 0.00 36.88 3.46
139 140 4.065321 TGGTCAAAATTTGGCACGAAAT 57.935 36.364 12.62 0.00 36.88 2.17
140 141 5.201713 TGGTCAAAATTTGGCACGAAATA 57.798 34.783 12.62 0.00 36.88 1.40
141 142 4.985409 TGGTCAAAATTTGGCACGAAATAC 59.015 37.500 12.62 0.00 36.88 1.89
142 143 4.985409 GGTCAAAATTTGGCACGAAATACA 59.015 37.500 12.62 0.00 36.88 2.29
143 144 5.463724 GGTCAAAATTTGGCACGAAATACAA 59.536 36.000 12.62 0.00 36.88 2.41
144 145 6.147000 GGTCAAAATTTGGCACGAAATACAAT 59.853 34.615 12.62 0.00 36.88 2.71
145 146 7.008859 GTCAAAATTTGGCACGAAATACAATG 58.991 34.615 5.33 0.00 34.79 2.82
146 147 6.146837 TCAAAATTTGGCACGAAATACAATGG 59.853 34.615 5.83 0.00 0.00 3.16
147 148 3.584406 TTTGGCACGAAATACAATGGG 57.416 42.857 0.00 0.00 0.00 4.00
148 149 1.468985 TGGCACGAAATACAATGGGG 58.531 50.000 0.00 0.00 0.00 4.96
149 150 1.004862 TGGCACGAAATACAATGGGGA 59.995 47.619 0.00 0.00 0.00 4.81
150 151 1.404035 GGCACGAAATACAATGGGGAC 59.596 52.381 0.00 0.00 0.00 4.46
164 165 3.179925 GGGACCAATAAACCCGGAC 57.820 57.895 0.73 0.00 34.03 4.79
165 166 0.745486 GGGACCAATAAACCCGGACG 60.745 60.000 0.73 0.00 34.03 4.79
166 167 0.745486 GGACCAATAAACCCGGACGG 60.745 60.000 0.73 3.25 37.81 4.79
167 168 0.249955 GACCAATAAACCCGGACGGA 59.750 55.000 13.13 0.00 37.50 4.69
168 169 0.251073 ACCAATAAACCCGGACGGAG 59.749 55.000 13.13 5.04 37.50 4.63
169 170 0.538118 CCAATAAACCCGGACGGAGA 59.462 55.000 13.13 0.00 37.50 3.71
170 171 1.140252 CCAATAAACCCGGACGGAGAT 59.860 52.381 13.13 0.00 37.50 2.75
171 172 2.366266 CCAATAAACCCGGACGGAGATA 59.634 50.000 13.13 2.31 37.50 1.98
172 173 3.554337 CCAATAAACCCGGACGGAGATAG 60.554 52.174 13.13 0.00 37.50 2.08
173 174 2.442236 TAAACCCGGACGGAGATAGT 57.558 50.000 13.13 0.00 37.50 2.12
174 175 2.442236 AAACCCGGACGGAGATAGTA 57.558 50.000 13.13 0.00 37.50 1.82
175 176 2.671896 AACCCGGACGGAGATAGTAT 57.328 50.000 13.13 0.00 37.50 2.12
176 177 2.197283 ACCCGGACGGAGATAGTATC 57.803 55.000 13.13 1.55 37.50 2.24
177 178 1.704070 ACCCGGACGGAGATAGTATCT 59.296 52.381 12.62 12.62 43.70 1.98
239 240 9.784531 TCCATCTTTTAATAAACAAAAATGCCA 57.215 25.926 0.00 0.00 0.00 4.92
252 253 9.941325 AAACAAAAATGCCATGTCTTAATATGA 57.059 25.926 0.00 0.00 0.00 2.15
253 254 9.941325 AACAAAAATGCCATGTCTTAATATGAA 57.059 25.926 0.00 0.00 0.00 2.57
254 255 9.941325 ACAAAAATGCCATGTCTTAATATGAAA 57.059 25.926 0.00 0.00 0.00 2.69
259 260 9.754382 AATGCCATGTCTTAATATGAAAATGTC 57.246 29.630 0.00 0.00 0.00 3.06
260 261 8.291191 TGCCATGTCTTAATATGAAAATGTCA 57.709 30.769 0.00 0.00 41.67 3.58
262 263 9.403110 GCCATGTCTTAATATGAAAATGTCATC 57.597 33.333 0.00 0.00 44.01 2.92
282 283 9.507329 TGTCATCTCTTATAAGGAATAAATGCC 57.493 33.333 12.54 0.01 29.59 4.40
283 284 9.507329 GTCATCTCTTATAAGGAATAAATGCCA 57.493 33.333 12.54 0.00 29.59 4.92
287 288 9.950496 TCTCTTATAAGGAATAAATGCCATCTC 57.050 33.333 12.54 0.00 29.59 2.75
288 289 9.956640 CTCTTATAAGGAATAAATGCCATCTCT 57.043 33.333 12.54 0.00 29.59 3.10
410 411 9.410556 AGATCATGTACAATAACAAAACTTTGC 57.589 29.630 0.00 0.00 41.79 3.68
411 412 9.410556 GATCATGTACAATAACAAAACTTTGCT 57.589 29.630 0.00 0.00 41.79 3.91
412 413 9.762933 ATCATGTACAATAACAAAACTTTGCTT 57.237 25.926 0.00 0.13 41.79 3.91
413 414 9.029243 TCATGTACAATAACAAAACTTTGCTTG 57.971 29.630 0.00 6.63 41.79 4.01
414 415 8.816144 CATGTACAATAACAAAACTTTGCTTGT 58.184 29.630 0.00 16.16 41.79 3.16
415 416 8.401046 TGTACAATAACAAAACTTTGCTTGTC 57.599 30.769 15.70 11.10 41.79 3.18
416 417 6.567769 ACAATAACAAAACTTTGCTTGTCG 57.432 33.333 2.07 0.00 41.79 4.35
417 418 6.326375 ACAATAACAAAACTTTGCTTGTCGA 58.674 32.000 2.07 0.00 41.79 4.20
418 419 6.809196 ACAATAACAAAACTTTGCTTGTCGAA 59.191 30.769 2.07 0.00 41.79 3.71
419 420 6.806120 ATAACAAAACTTTGCTTGTCGAAC 57.194 33.333 2.07 0.00 41.79 3.95
420 421 4.167554 ACAAAACTTTGCTTGTCGAACA 57.832 36.364 2.07 0.00 41.79 3.18
421 422 4.551388 ACAAAACTTTGCTTGTCGAACAA 58.449 34.783 2.07 0.00 41.79 2.83
422 423 4.985409 ACAAAACTTTGCTTGTCGAACAAA 59.015 33.333 2.07 0.00 41.79 2.83
423 424 5.463724 ACAAAACTTTGCTTGTCGAACAAAA 59.536 32.000 2.07 0.00 41.79 2.44
424 425 5.509605 AAACTTTGCTTGTCGAACAAAAC 57.490 34.783 0.00 0.00 37.69 2.43
425 426 4.167554 ACTTTGCTTGTCGAACAAAACA 57.832 36.364 0.00 0.00 37.69 2.83
426 427 4.551388 ACTTTGCTTGTCGAACAAAACAA 58.449 34.783 0.00 0.00 37.69 2.83
427 428 4.985409 ACTTTGCTTGTCGAACAAAACAAA 59.015 33.333 17.42 17.42 39.64 2.83
428 429 5.463724 ACTTTGCTTGTCGAACAAAACAAAA 59.536 32.000 18.17 10.08 40.51 2.44
429 430 5.907197 TTGCTTGTCGAACAAAACAAAAA 57.093 30.435 0.00 0.00 37.69 1.94
430 431 6.473397 TTGCTTGTCGAACAAAACAAAAAT 57.527 29.167 0.00 0.00 37.69 1.82
431 432 7.582435 TTGCTTGTCGAACAAAACAAAAATA 57.418 28.000 0.00 0.00 37.69 1.40
432 433 7.215696 TGCTTGTCGAACAAAACAAAAATAG 57.784 32.000 0.00 0.00 37.69 1.73
433 434 7.030165 TGCTTGTCGAACAAAACAAAAATAGA 58.970 30.769 0.00 0.00 37.69 1.98
434 435 7.008810 TGCTTGTCGAACAAAACAAAAATAGAC 59.991 33.333 0.00 0.00 37.69 2.59
435 436 7.008810 GCTTGTCGAACAAAACAAAAATAGACA 59.991 33.333 0.00 0.00 37.69 3.41
436 437 8.744008 TTGTCGAACAAAACAAAAATAGACAA 57.256 26.923 0.00 0.00 40.90 3.18
437 438 8.744008 TGTCGAACAAAACAAAAATAGACAAA 57.256 26.923 0.00 0.00 32.85 2.83
438 439 8.640291 TGTCGAACAAAACAAAAATAGACAAAC 58.360 29.630 0.00 0.00 32.85 2.93
439 440 8.856247 GTCGAACAAAACAAAAATAGACAAACT 58.144 29.630 0.00 0.00 0.00 2.66
440 441 9.413048 TCGAACAAAACAAAAATAGACAAACTT 57.587 25.926 0.00 0.00 0.00 2.66
470 471 6.594788 AAAAGAAATGCCATGTGACATAGT 57.405 33.333 0.00 0.00 0.00 2.12
471 472 6.594788 AAAGAAATGCCATGTGACATAGTT 57.405 33.333 0.00 0.00 0.00 2.24
472 473 6.594788 AAGAAATGCCATGTGACATAGTTT 57.405 33.333 0.00 0.00 0.00 2.66
473 474 5.957798 AGAAATGCCATGTGACATAGTTTG 58.042 37.500 0.00 0.00 0.00 2.93
474 475 5.711506 AGAAATGCCATGTGACATAGTTTGA 59.288 36.000 0.00 0.00 0.00 2.69
475 476 5.981088 AATGCCATGTGACATAGTTTGAA 57.019 34.783 0.00 0.00 0.00 2.69
476 477 5.981088 ATGCCATGTGACATAGTTTGAAA 57.019 34.783 0.00 0.00 0.00 2.69
477 478 5.781210 TGCCATGTGACATAGTTTGAAAA 57.219 34.783 0.00 0.00 0.00 2.29
478 479 6.343716 TGCCATGTGACATAGTTTGAAAAT 57.656 33.333 0.00 0.00 0.00 1.82
479 480 6.757237 TGCCATGTGACATAGTTTGAAAATT 58.243 32.000 0.00 0.00 0.00 1.82
480 481 7.215789 TGCCATGTGACATAGTTTGAAAATTT 58.784 30.769 0.00 0.00 0.00 1.82
481 482 8.363390 TGCCATGTGACATAGTTTGAAAATTTA 58.637 29.630 0.00 0.00 0.00 1.40
482 483 9.369904 GCCATGTGACATAGTTTGAAAATTTAT 57.630 29.630 0.00 0.00 0.00 1.40
551 552 6.961360 AAAAAGAAGTAAAAGGGAGACTGG 57.039 37.500 0.00 0.00 0.00 4.00
552 553 4.642466 AAGAAGTAAAAGGGAGACTGGG 57.358 45.455 0.00 0.00 0.00 4.45
553 554 3.870559 AGAAGTAAAAGGGAGACTGGGA 58.129 45.455 0.00 0.00 0.00 4.37
554 555 4.439860 AGAAGTAAAAGGGAGACTGGGAT 58.560 43.478 0.00 0.00 0.00 3.85
555 556 4.852697 AGAAGTAAAAGGGAGACTGGGATT 59.147 41.667 0.00 0.00 0.00 3.01
556 557 4.846168 AGTAAAAGGGAGACTGGGATTC 57.154 45.455 0.00 0.00 0.00 2.52
557 558 4.439860 AGTAAAAGGGAGACTGGGATTCT 58.560 43.478 0.00 0.00 0.00 2.40
558 559 5.600749 AGTAAAAGGGAGACTGGGATTCTA 58.399 41.667 0.00 0.00 0.00 2.10
559 560 6.030082 AGTAAAAGGGAGACTGGGATTCTAA 58.970 40.000 0.00 0.00 0.00 2.10
560 561 4.846168 AAAGGGAGACTGGGATTCTAAC 57.154 45.455 0.00 0.00 0.00 2.34
561 562 2.765502 AGGGAGACTGGGATTCTAACC 58.234 52.381 0.00 0.00 0.00 2.85
562 563 2.045885 AGGGAGACTGGGATTCTAACCA 59.954 50.000 0.00 0.00 35.05 3.67
563 564 2.844348 GGGAGACTGGGATTCTAACCAA 59.156 50.000 0.00 0.00 36.09 3.67
564 565 3.118223 GGGAGACTGGGATTCTAACCAAG 60.118 52.174 0.00 0.00 36.09 3.61
565 566 3.775316 GGAGACTGGGATTCTAACCAAGA 59.225 47.826 0.00 0.00 36.09 3.02
566 567 4.410555 GGAGACTGGGATTCTAACCAAGAT 59.589 45.833 0.00 0.00 36.09 2.40
567 568 5.454045 GGAGACTGGGATTCTAACCAAGATC 60.454 48.000 0.00 0.00 36.09 2.75
568 569 5.284582 AGACTGGGATTCTAACCAAGATCT 58.715 41.667 0.00 0.00 36.09 2.75
569 570 5.365314 AGACTGGGATTCTAACCAAGATCTC 59.635 44.000 0.00 0.00 36.09 2.75
570 571 5.284582 ACTGGGATTCTAACCAAGATCTCT 58.715 41.667 0.00 0.00 36.09 3.10
571 572 5.728741 ACTGGGATTCTAACCAAGATCTCTT 59.271 40.000 0.00 0.00 36.09 2.85
572 573 6.903534 ACTGGGATTCTAACCAAGATCTCTTA 59.096 38.462 0.00 0.00 36.09 2.10
573 574 7.070571 ACTGGGATTCTAACCAAGATCTCTTAG 59.929 40.741 0.00 2.34 36.09 2.18
574 575 6.327626 TGGGATTCTAACCAAGATCTCTTAGG 59.672 42.308 0.00 0.00 34.28 2.69
575 576 6.327887 GGGATTCTAACCAAGATCTCTTAGGT 59.672 42.308 0.00 0.00 38.27 3.08
576 577 7.509659 GGGATTCTAACCAAGATCTCTTAGGTA 59.490 40.741 0.00 0.45 36.81 3.08
577 578 9.095700 GGATTCTAACCAAGATCTCTTAGGTAT 57.904 37.037 0.00 0.76 36.81 2.73
583 584 8.903059 AACCAAGATCTCTTAGGTATATAGGG 57.097 38.462 0.00 0.00 36.81 3.53
584 585 8.013806 ACCAAGATCTCTTAGGTATATAGGGT 57.986 38.462 0.00 0.00 36.39 4.34
585 586 8.117312 ACCAAGATCTCTTAGGTATATAGGGTC 58.883 40.741 0.00 0.00 36.39 4.46
586 587 7.283580 CCAAGATCTCTTAGGTATATAGGGTCG 59.716 44.444 0.00 0.00 34.28 4.79
587 588 6.358991 AGATCTCTTAGGTATATAGGGTCGC 58.641 44.000 0.00 0.00 0.00 5.19
588 589 4.511527 TCTCTTAGGTATATAGGGTCGCG 58.488 47.826 0.00 0.00 0.00 5.87
589 590 4.019860 TCTCTTAGGTATATAGGGTCGCGT 60.020 45.833 5.77 0.00 0.00 6.01
590 591 4.256920 TCTTAGGTATATAGGGTCGCGTC 58.743 47.826 5.77 0.00 0.00 5.19
591 592 2.574006 AGGTATATAGGGTCGCGTCA 57.426 50.000 5.77 0.00 0.00 4.35
592 593 2.157738 AGGTATATAGGGTCGCGTCAC 58.842 52.381 5.77 0.01 0.00 3.67
593 594 2.157738 GGTATATAGGGTCGCGTCACT 58.842 52.381 13.63 13.63 0.00 3.41
594 595 3.008375 AGGTATATAGGGTCGCGTCACTA 59.992 47.826 17.35 17.35 0.00 2.74
595 596 3.373439 GGTATATAGGGTCGCGTCACTAG 59.627 52.174 19.51 0.00 0.00 2.57
596 597 1.233019 TATAGGGTCGCGTCACTAGC 58.767 55.000 19.51 3.47 0.00 3.42
597 598 0.750546 ATAGGGTCGCGTCACTAGCA 60.751 55.000 19.51 0.19 34.19 3.49
598 599 0.961857 TAGGGTCGCGTCACTAGCAA 60.962 55.000 11.34 0.00 34.19 3.91
599 600 1.373748 GGGTCGCGTCACTAGCAAA 60.374 57.895 5.77 0.00 34.19 3.68
600 601 0.739813 GGGTCGCGTCACTAGCAAAT 60.740 55.000 5.77 0.00 34.19 2.32
601 602 0.370273 GGTCGCGTCACTAGCAAATG 59.630 55.000 5.77 0.00 34.19 2.32
602 603 0.247301 GTCGCGTCACTAGCAAATGC 60.247 55.000 5.77 0.00 42.49 3.56
603 604 1.682867 TCGCGTCACTAGCAAATGCG 61.683 55.000 5.77 15.99 46.79 4.73
612 613 2.650196 GCAAATGCGGTGGCTGAA 59.350 55.556 0.00 0.00 40.82 3.02
613 614 1.006337 GCAAATGCGGTGGCTGAAA 60.006 52.632 0.00 0.00 40.82 2.69
614 615 0.599728 GCAAATGCGGTGGCTGAAAA 60.600 50.000 0.00 0.00 40.82 2.29
615 616 1.940752 GCAAATGCGGTGGCTGAAAAT 60.941 47.619 0.00 0.00 40.82 1.82
616 617 1.727880 CAAATGCGGTGGCTGAAAATG 59.272 47.619 0.00 0.00 40.82 2.32
617 618 0.968405 AATGCGGTGGCTGAAAATGT 59.032 45.000 0.00 0.00 40.82 2.71
618 619 0.968405 ATGCGGTGGCTGAAAATGTT 59.032 45.000 0.00 0.00 40.82 2.71
619 620 1.610363 TGCGGTGGCTGAAAATGTTA 58.390 45.000 0.00 0.00 40.82 2.41
620 621 2.166829 TGCGGTGGCTGAAAATGTTAT 58.833 42.857 0.00 0.00 40.82 1.89
621 622 2.094803 TGCGGTGGCTGAAAATGTTATG 60.095 45.455 0.00 0.00 40.82 1.90
622 623 2.529151 CGGTGGCTGAAAATGTTATGC 58.471 47.619 0.00 0.00 0.00 3.14
623 624 2.094803 CGGTGGCTGAAAATGTTATGCA 60.095 45.455 0.00 0.00 0.00 3.96
624 625 3.429272 CGGTGGCTGAAAATGTTATGCAT 60.429 43.478 3.79 3.79 40.03 3.96
625 626 3.866910 GGTGGCTGAAAATGTTATGCATG 59.133 43.478 10.16 0.00 37.96 4.06
626 627 3.866910 GTGGCTGAAAATGTTATGCATGG 59.133 43.478 10.16 0.00 37.96 3.66
627 628 3.514706 TGGCTGAAAATGTTATGCATGGT 59.485 39.130 10.16 0.00 37.96 3.55
628 629 4.708909 TGGCTGAAAATGTTATGCATGGTA 59.291 37.500 10.16 0.00 37.96 3.25
629 630 5.363292 TGGCTGAAAATGTTATGCATGGTAT 59.637 36.000 10.16 0.00 37.96 2.73
630 631 6.127111 TGGCTGAAAATGTTATGCATGGTATT 60.127 34.615 10.16 3.99 37.96 1.89
631 632 6.201425 GGCTGAAAATGTTATGCATGGTATTG 59.799 38.462 10.16 0.00 37.96 1.90
632 633 6.292488 GCTGAAAATGTTATGCATGGTATTGC 60.292 38.462 10.16 3.32 43.07 3.56
633 634 5.747675 TGAAAATGTTATGCATGGTATTGCG 59.252 36.000 10.16 0.00 45.77 4.85
634 635 4.916983 AATGTTATGCATGGTATTGCGT 57.083 36.364 10.16 0.00 45.77 5.24
635 636 4.916983 ATGTTATGCATGGTATTGCGTT 57.083 36.364 10.16 0.00 45.77 4.84
636 637 4.285807 TGTTATGCATGGTATTGCGTTC 57.714 40.909 10.16 0.00 45.77 3.95
637 638 3.242576 TGTTATGCATGGTATTGCGTTCG 60.243 43.478 10.16 0.00 45.77 3.95
638 639 0.029300 ATGCATGGTATTGCGTTCGC 59.971 50.000 10.34 10.34 45.77 4.70
639 640 1.024046 TGCATGGTATTGCGTTCGCT 61.024 50.000 17.63 1.70 45.77 4.93
640 641 0.589729 GCATGGTATTGCGTTCGCTG 60.590 55.000 17.63 7.26 32.06 5.18
641 642 0.027979 CATGGTATTGCGTTCGCTGG 59.972 55.000 17.63 0.00 0.00 4.85
642 643 0.107897 ATGGTATTGCGTTCGCTGGA 60.108 50.000 17.63 5.09 0.00 3.86
643 644 0.107897 TGGTATTGCGTTCGCTGGAT 60.108 50.000 17.63 11.25 0.00 3.41
644 645 1.014352 GGTATTGCGTTCGCTGGATT 58.986 50.000 17.63 1.94 0.00 3.01
645 646 1.400494 GGTATTGCGTTCGCTGGATTT 59.600 47.619 17.63 0.40 0.00 2.17
646 647 2.159435 GGTATTGCGTTCGCTGGATTTT 60.159 45.455 17.63 0.00 0.00 1.82
647 648 3.064271 GGTATTGCGTTCGCTGGATTTTA 59.936 43.478 17.63 0.00 0.00 1.52
648 649 4.261031 GGTATTGCGTTCGCTGGATTTTAT 60.261 41.667 17.63 2.63 0.00 1.40
649 650 3.398954 TTGCGTTCGCTGGATTTTATC 57.601 42.857 17.63 0.00 0.00 1.75
650 651 1.326245 TGCGTTCGCTGGATTTTATCG 59.674 47.619 17.63 0.00 0.00 2.92
651 652 1.326548 GCGTTCGCTGGATTTTATCGT 59.673 47.619 9.99 0.00 0.00 3.73
652 653 2.536803 GCGTTCGCTGGATTTTATCGTA 59.463 45.455 9.99 0.00 0.00 3.43
653 654 3.600909 GCGTTCGCTGGATTTTATCGTAC 60.601 47.826 9.99 0.00 0.00 3.67
654 655 3.548668 CGTTCGCTGGATTTTATCGTACA 59.451 43.478 0.00 0.00 0.00 2.90
655 656 4.317139 CGTTCGCTGGATTTTATCGTACAG 60.317 45.833 0.00 0.00 0.00 2.74
656 657 3.120792 TCGCTGGATTTTATCGTACAGC 58.879 45.455 0.00 0.00 45.63 4.40
657 658 3.505449 GCTGGATTTTATCGTACAGCG 57.495 47.619 0.00 0.00 41.34 5.18
670 671 4.959631 CGTACAGCGAAGTAGTTTCAAA 57.040 40.909 0.00 0.00 44.77 2.69
671 672 5.319232 CGTACAGCGAAGTAGTTTCAAAA 57.681 39.130 0.00 0.00 44.77 2.44
672 673 5.912528 CGTACAGCGAAGTAGTTTCAAAAT 58.087 37.500 0.00 0.00 44.77 1.82
673 674 6.007677 CGTACAGCGAAGTAGTTTCAAAATC 58.992 40.000 0.00 0.00 44.77 2.17
674 675 5.358298 ACAGCGAAGTAGTTTCAAAATCC 57.642 39.130 0.00 0.00 35.43 3.01
675 676 4.084013 ACAGCGAAGTAGTTTCAAAATCCG 60.084 41.667 0.00 0.00 35.43 4.18
676 677 4.151689 CAGCGAAGTAGTTTCAAAATCCGA 59.848 41.667 0.00 0.00 35.43 4.55
677 678 4.151867 AGCGAAGTAGTTTCAAAATCCGAC 59.848 41.667 0.00 0.00 35.43 4.79
678 679 4.625135 CGAAGTAGTTTCAAAATCCGACG 58.375 43.478 0.00 0.00 35.43 5.12
679 680 4.149396 CGAAGTAGTTTCAAAATCCGACGT 59.851 41.667 0.00 0.00 35.43 4.34
680 681 4.985044 AGTAGTTTCAAAATCCGACGTG 57.015 40.909 0.00 0.00 0.00 4.49
681 682 3.744426 AGTAGTTTCAAAATCCGACGTGG 59.256 43.478 0.00 0.00 40.09 4.94
682 683 1.265905 AGTTTCAAAATCCGACGTGGC 59.734 47.619 0.00 0.00 37.80 5.01
683 684 1.265905 GTTTCAAAATCCGACGTGGCT 59.734 47.619 0.00 0.00 37.80 4.75
684 685 1.153353 TTCAAAATCCGACGTGGCTC 58.847 50.000 0.00 0.00 37.80 4.70
685 686 0.672401 TCAAAATCCGACGTGGCTCC 60.672 55.000 0.00 0.00 37.80 4.70
686 687 1.740296 AAAATCCGACGTGGCTCCG 60.740 57.895 0.00 0.00 37.80 4.63
687 688 2.162338 AAAATCCGACGTGGCTCCGA 62.162 55.000 0.00 0.00 37.80 4.55
688 689 1.956629 AAATCCGACGTGGCTCCGAT 61.957 55.000 0.00 0.00 37.80 4.18
689 690 2.351336 AATCCGACGTGGCTCCGATC 62.351 60.000 0.00 0.00 37.80 3.69
690 691 4.570663 CCGACGTGGCTCCGATCC 62.571 72.222 0.00 0.00 0.00 3.36
691 692 4.907034 CGACGTGGCTCCGATCCG 62.907 72.222 0.00 0.00 0.00 4.18
697 698 4.899239 GGCTCCGATCCGCACCAG 62.899 72.222 0.00 0.00 0.00 4.00
698 699 4.899239 GCTCCGATCCGCACCAGG 62.899 72.222 0.00 0.00 0.00 4.45
699 700 3.147595 CTCCGATCCGCACCAGGA 61.148 66.667 0.00 0.00 45.54 3.86
705 706 2.264480 TCCGCACCAGGATTCGTG 59.736 61.111 0.00 0.00 34.92 4.35
710 711 2.759783 CACCAGGATTCGTGCAGAG 58.240 57.895 0.00 0.00 0.00 3.35
711 712 0.742281 CACCAGGATTCGTGCAGAGG 60.742 60.000 0.00 0.00 0.00 3.69
712 713 0.904865 ACCAGGATTCGTGCAGAGGA 60.905 55.000 0.00 0.00 0.00 3.71
713 714 0.250234 CCAGGATTCGTGCAGAGGAA 59.750 55.000 0.76 0.00 0.00 3.36
714 715 1.339055 CCAGGATTCGTGCAGAGGAAA 60.339 52.381 0.76 0.00 30.07 3.13
715 716 2.636830 CAGGATTCGTGCAGAGGAAAT 58.363 47.619 0.00 0.00 30.07 2.17
716 717 2.611292 CAGGATTCGTGCAGAGGAAATC 59.389 50.000 0.00 0.00 30.07 2.17
717 718 1.943340 GGATTCGTGCAGAGGAAATCC 59.057 52.381 8.75 8.75 30.07 3.01
718 719 2.632377 GATTCGTGCAGAGGAAATCCA 58.368 47.619 1.67 0.00 38.89 3.41
719 720 2.559698 TTCGTGCAGAGGAAATCCAA 57.440 45.000 1.67 0.00 38.89 3.53
720 721 2.787473 TCGTGCAGAGGAAATCCAAT 57.213 45.000 1.67 0.00 38.89 3.16
721 722 2.358957 TCGTGCAGAGGAAATCCAATG 58.641 47.619 1.67 1.19 38.89 2.82
722 723 1.402968 CGTGCAGAGGAAATCCAATGG 59.597 52.381 1.67 0.00 38.89 3.16
723 724 1.753073 GTGCAGAGGAAATCCAATGGG 59.247 52.381 0.00 0.00 38.89 4.00
732 733 2.268920 TCCAATGGGAGAGTGCGC 59.731 61.111 0.00 0.00 38.64 6.09
733 734 3.197790 CCAATGGGAGAGTGCGCG 61.198 66.667 0.00 0.00 35.59 6.86
734 735 2.434884 CAATGGGAGAGTGCGCGT 60.435 61.111 8.43 0.00 0.00 6.01
735 736 2.034879 CAATGGGAGAGTGCGCGTT 61.035 57.895 8.43 0.00 0.00 4.84
736 737 1.741770 AATGGGAGAGTGCGCGTTC 60.742 57.895 8.43 2.36 0.00 3.95
737 738 3.989698 ATGGGAGAGTGCGCGTTCG 62.990 63.158 8.43 0.00 39.07 3.95
747 748 4.520846 CGCGTTCGCTGGGATTGC 62.521 66.667 14.92 8.13 0.00 3.56
748 749 4.179579 GCGTTCGCTGGGATTGCC 62.180 66.667 9.99 0.00 0.00 4.52
758 759 4.483243 GGATTGCCCCCGAGCGAA 62.483 66.667 0.00 0.00 34.65 4.70
759 760 3.202706 GATTGCCCCCGAGCGAAC 61.203 66.667 0.00 0.00 34.65 3.95
764 765 4.367023 CCCCCGAGCGAACGTTCA 62.367 66.667 26.71 0.00 0.00 3.18
765 766 3.110178 CCCCGAGCGAACGTTCAC 61.110 66.667 26.71 18.14 0.00 3.18
766 767 3.110178 CCCGAGCGAACGTTCACC 61.110 66.667 26.71 16.82 0.00 4.02
767 768 2.355363 CCGAGCGAACGTTCACCA 60.355 61.111 26.71 0.00 0.00 4.17
768 769 2.372690 CCGAGCGAACGTTCACCAG 61.373 63.158 26.71 13.92 0.00 4.00
769 770 1.660575 CGAGCGAACGTTCACCAGT 60.661 57.895 26.71 6.81 0.00 4.00
770 771 1.213094 CGAGCGAACGTTCACCAGTT 61.213 55.000 26.71 9.34 0.00 3.16
771 772 1.774639 GAGCGAACGTTCACCAGTTA 58.225 50.000 26.71 0.00 0.00 2.24
772 773 1.454653 GAGCGAACGTTCACCAGTTAC 59.545 52.381 26.71 6.33 0.00 2.50
773 774 1.068127 AGCGAACGTTCACCAGTTACT 59.932 47.619 26.71 8.32 0.00 2.24
774 775 2.294233 AGCGAACGTTCACCAGTTACTA 59.706 45.455 26.71 0.00 0.00 1.82
775 776 3.057033 AGCGAACGTTCACCAGTTACTAT 60.057 43.478 26.71 0.00 0.00 2.12
776 777 3.676646 GCGAACGTTCACCAGTTACTATT 59.323 43.478 26.71 0.00 0.00 1.73
777 778 4.151157 GCGAACGTTCACCAGTTACTATTT 59.849 41.667 26.71 0.00 0.00 1.40
778 779 5.667156 GCGAACGTTCACCAGTTACTATTTC 60.667 44.000 26.71 0.00 0.00 2.17
779 780 5.442390 CGAACGTTCACCAGTTACTATTTCG 60.442 44.000 26.71 4.59 0.00 3.46
780 781 3.676646 ACGTTCACCAGTTACTATTTCGC 59.323 43.478 0.00 0.00 0.00 4.70
781 782 3.241552 CGTTCACCAGTTACTATTTCGCG 60.242 47.826 0.00 0.00 0.00 5.87
782 783 3.581024 TCACCAGTTACTATTTCGCGT 57.419 42.857 5.77 0.00 0.00 6.01
783 784 3.504863 TCACCAGTTACTATTTCGCGTC 58.495 45.455 5.77 0.00 0.00 5.19
869 870 1.228190 GGCCCCTAAAACCCTATCCA 58.772 55.000 0.00 0.00 0.00 3.41
898 899 2.119029 GCCCAGCGATAACCAACCC 61.119 63.158 0.00 0.00 0.00 4.11
1026 1028 2.361992 CAGCTGCAGGGCAATGGA 60.362 61.111 17.12 0.00 38.41 3.41
1221 1229 2.668550 GACCGGCACACCAAGGTC 60.669 66.667 0.00 0.00 45.07 3.85
1305 1313 2.435059 GAGCTCGGCCACAAGACC 60.435 66.667 2.24 0.00 0.00 3.85
1551 1559 3.547513 CCTGCGGCCTACTACCCC 61.548 72.222 0.00 0.00 0.00 4.95
1554 1562 3.909285 GCGGCCTACTACCCCGTC 61.909 72.222 0.00 0.00 43.70 4.79
1557 1565 4.261781 GCCTACTACCCCGTCGCG 62.262 72.222 0.00 0.00 0.00 5.87
1794 1802 1.302192 GCACTACTGGGCGTTCCAA 60.302 57.895 1.60 0.00 46.51 3.53
1921 1929 1.673665 GAGCCACAGGACCAGCAAG 60.674 63.158 0.00 0.00 0.00 4.01
1936 1944 1.071471 CAAGAAGCCGGTGACCAGT 59.929 57.895 1.90 0.00 0.00 4.00
1998 2006 4.719369 GACGGCGAGGCGTTGACT 62.719 66.667 24.53 2.38 0.00 3.41
2022 2030 0.749649 CCAGCTCCGAAGAGTAGCAT 59.250 55.000 0.00 0.00 42.59 3.79
2049 2057 3.724494 GCGCCAAGCTCCATAGTC 58.276 61.111 0.00 0.00 44.04 2.59
2114 2124 6.150641 TGCCTGATCTGATTTTCTTCTTTCTG 59.849 38.462 0.38 0.00 0.00 3.02
2127 2141 4.576463 TCTTCTTTCTGTCTTTCTTGTGCC 59.424 41.667 0.00 0.00 0.00 5.01
2135 2149 2.158449 GTCTTTCTTGTGCCATGTCTCG 59.842 50.000 0.00 0.00 0.00 4.04
2166 2181 4.064388 GTTGGTGATTTTGGTTGGATTGG 58.936 43.478 0.00 0.00 0.00 3.16
2192 2207 5.367945 TTGGAAACTGGTGTAGAGAAGTT 57.632 39.130 0.00 0.00 34.40 2.66
2218 2235 5.374898 GTGTCGACAATTGAGTAGAAAAGC 58.625 41.667 21.95 0.00 0.00 3.51
2228 2245 4.388485 TGAGTAGAAAAGCTTGACATGCA 58.612 39.130 15.01 0.00 0.00 3.96
2239 2258 5.464168 AGCTTGACATGCACAAAAGTTATC 58.536 37.500 15.01 0.00 0.00 1.75
2257 2276 7.907214 AGTTATCACGAGTTTATCTGCTTTT 57.093 32.000 0.00 0.00 0.00 2.27
2263 2282 4.084507 CGAGTTTATCTGCTTTTTCTGCG 58.915 43.478 0.00 0.00 0.00 5.18
2265 2284 5.163992 CGAGTTTATCTGCTTTTTCTGCGTA 60.164 40.000 0.00 0.00 0.00 4.42
2266 2285 6.170675 AGTTTATCTGCTTTTTCTGCGTAG 57.829 37.500 0.00 0.00 0.00 3.51
2267 2286 5.701290 AGTTTATCTGCTTTTTCTGCGTAGT 59.299 36.000 0.00 0.00 0.00 2.73
2268 2287 6.872020 AGTTTATCTGCTTTTTCTGCGTAGTA 59.128 34.615 0.00 0.00 0.00 1.82
2269 2288 6.642683 TTATCTGCTTTTTCTGCGTAGTAC 57.357 37.500 0.00 0.00 0.00 2.73
2281 2301 5.288015 TCTGCGTAGTACTAGTAGTAGCAG 58.712 45.833 32.56 32.56 40.16 4.24
2282 2302 3.806521 TGCGTAGTACTAGTAGTAGCAGC 59.193 47.826 23.62 22.47 30.12 5.25
2283 2303 3.806521 GCGTAGTACTAGTAGTAGCAGCA 59.193 47.826 22.25 4.14 30.12 4.41
2307 2329 0.029300 CCTGTGCACTCGGTGTTTTG 59.971 55.000 19.41 0.00 35.75 2.44
2344 2366 4.640771 TCAATCTTTTGACTGCCCTAGT 57.359 40.909 0.00 0.00 44.02 2.57
2345 2367 5.755409 TCAATCTTTTGACTGCCCTAGTA 57.245 39.130 0.00 0.00 40.53 1.82
2349 2371 4.894784 TCTTTTGACTGCCCTAGTAGTTG 58.105 43.478 0.00 0.00 39.28 3.16
2350 2372 4.591498 TCTTTTGACTGCCCTAGTAGTTGA 59.409 41.667 0.00 0.00 39.28 3.18
2351 2373 3.955650 TTGACTGCCCTAGTAGTTGAC 57.044 47.619 0.00 0.00 39.28 3.18
2352 2374 3.170991 TGACTGCCCTAGTAGTTGACT 57.829 47.619 0.00 0.00 39.28 3.41
2353 2375 4.311520 TGACTGCCCTAGTAGTTGACTA 57.688 45.455 0.00 0.00 39.28 2.59
2354 2376 4.015084 TGACTGCCCTAGTAGTTGACTAC 58.985 47.826 12.30 12.30 46.93 2.73
2365 2387 3.446442 AGTTGACTACTCCCTCCGTAA 57.554 47.619 0.00 0.00 28.23 3.18
2366 2388 3.771216 AGTTGACTACTCCCTCCGTAAA 58.229 45.455 0.00 0.00 28.23 2.01
2367 2389 4.154942 AGTTGACTACTCCCTCCGTAAAA 58.845 43.478 0.00 0.00 28.23 1.52
2368 2390 4.590222 AGTTGACTACTCCCTCCGTAAAAA 59.410 41.667 0.00 0.00 28.23 1.94
2429 2451 7.563724 TCTTTACAAAGGGAGTACTATTGGT 57.436 36.000 0.00 0.00 36.67 3.67
2430 2452 8.669055 TCTTTACAAAGGGAGTACTATTGGTA 57.331 34.615 0.00 0.00 36.67 3.25
2431 2453 8.534496 TCTTTACAAAGGGAGTACTATTGGTAC 58.466 37.037 0.00 2.31 41.93 3.34
2473 2518 3.808726 TGCAAGAACACAAATGCATTTCC 59.191 39.130 21.70 8.84 43.32 3.13
2486 2531 8.782144 ACAAATGCATTTCCGTTTGAAAATATT 58.218 25.926 21.70 0.00 45.67 1.28
2494 2539 9.855021 ATTTCCGTTTGAAAATATTAGAAGGTG 57.145 29.630 0.00 0.00 45.67 4.00
2496 2541 8.398878 TCCGTTTGAAAATATTAGAAGGTGTT 57.601 30.769 0.00 0.00 0.00 3.32
2498 2543 7.540745 CCGTTTGAAAATATTAGAAGGTGTTGG 59.459 37.037 0.00 0.00 0.00 3.77
2704 2749 9.880157 TTGACTCAACTTTGTACTAACTTTAGT 57.120 29.630 6.85 6.85 45.39 2.24
2705 2750 9.525409 TGACTCAACTTTGTACTAACTTTAGTC 57.475 33.333 4.90 12.38 42.66 2.59
2706 2751 9.747293 GACTCAACTTTGTACTAACTTTAGTCT 57.253 33.333 4.90 0.00 42.66 3.24
2804 2849 9.760077 ATATTAGTTTACGGATGGAGTACAAAG 57.240 33.333 0.00 0.00 0.00 2.77
2805 2850 5.479124 AGTTTACGGATGGAGTACAAAGT 57.521 39.130 0.00 0.00 0.00 2.66
2806 2851 6.594788 AGTTTACGGATGGAGTACAAAGTA 57.405 37.500 0.00 0.00 0.00 2.24
2807 2852 6.628185 AGTTTACGGATGGAGTACAAAGTAG 58.372 40.000 0.00 0.00 0.00 2.57
2808 2853 6.435277 AGTTTACGGATGGAGTACAAAGTAGA 59.565 38.462 0.00 0.00 0.00 2.59
2809 2854 4.985538 ACGGATGGAGTACAAAGTAGAG 57.014 45.455 0.00 0.00 0.00 2.43
2810 2855 4.342359 ACGGATGGAGTACAAAGTAGAGT 58.658 43.478 0.00 0.00 0.00 3.24
2811 2856 4.398673 ACGGATGGAGTACAAAGTAGAGTC 59.601 45.833 0.00 0.00 0.00 3.36
2812 2857 4.398358 CGGATGGAGTACAAAGTAGAGTCA 59.602 45.833 0.00 0.00 0.00 3.41
2813 2858 5.652518 GGATGGAGTACAAAGTAGAGTCAC 58.347 45.833 0.00 0.00 0.00 3.67
2814 2859 5.419471 GGATGGAGTACAAAGTAGAGTCACT 59.581 44.000 0.00 0.00 0.00 3.41
2815 2860 6.071278 GGATGGAGTACAAAGTAGAGTCACTT 60.071 42.308 0.00 0.00 40.49 3.16
2816 2861 7.122353 GGATGGAGTACAAAGTAGAGTCACTTA 59.878 40.741 7.95 0.00 37.78 2.24
2817 2862 8.596781 ATGGAGTACAAAGTAGAGTCACTTAT 57.403 34.615 7.95 4.10 37.78 1.73
2818 2863 8.418597 TGGAGTACAAAGTAGAGTCACTTATT 57.581 34.615 7.95 2.93 37.78 1.40
2819 2864 8.867097 TGGAGTACAAAGTAGAGTCACTTATTT 58.133 33.333 7.95 1.15 37.78 1.40
2820 2865 9.708092 GGAGTACAAAGTAGAGTCACTTATTTT 57.292 33.333 7.95 0.00 37.78 1.82
2830 2875 9.589111 GTAGAGTCACTTATTTTAGGAAGAAGG 57.411 37.037 0.00 0.00 0.00 3.46
2831 2876 7.625469 AGAGTCACTTATTTTAGGAAGAAGGG 58.375 38.462 0.00 0.00 0.00 3.95
2832 2877 7.458170 AGAGTCACTTATTTTAGGAAGAAGGGA 59.542 37.037 0.00 0.00 0.00 4.20
2833 2878 7.625469 AGTCACTTATTTTAGGAAGAAGGGAG 58.375 38.462 0.00 0.00 30.42 4.30
2834 2879 7.237887 AGTCACTTATTTTAGGAAGAAGGGAGT 59.762 37.037 0.00 0.08 30.42 3.85
2835 2880 8.537858 GTCACTTATTTTAGGAAGAAGGGAGTA 58.462 37.037 0.00 0.00 30.42 2.59
2836 2881 8.537858 TCACTTATTTTAGGAAGAAGGGAGTAC 58.462 37.037 0.00 0.00 0.00 2.73
2837 2882 8.319146 CACTTATTTTAGGAAGAAGGGAGTACA 58.681 37.037 0.00 0.00 0.00 2.90
2838 2883 9.059023 ACTTATTTTAGGAAGAAGGGAGTACAT 57.941 33.333 0.00 0.00 0.00 2.29
2839 2884 9.331282 CTTATTTTAGGAAGAAGGGAGTACATG 57.669 37.037 0.00 0.00 0.00 3.21
2840 2885 6.697641 TTTTAGGAAGAAGGGAGTACATGT 57.302 37.500 2.69 2.69 0.00 3.21
2841 2886 6.697641 TTTAGGAAGAAGGGAGTACATGTT 57.302 37.500 2.30 0.00 0.00 2.71
2842 2887 7.801893 TTTAGGAAGAAGGGAGTACATGTTA 57.198 36.000 2.30 0.00 0.00 2.41
2843 2888 7.989947 TTAGGAAGAAGGGAGTACATGTTAT 57.010 36.000 2.30 0.00 0.00 1.89
2844 2889 6.240549 AGGAAGAAGGGAGTACATGTTATG 57.759 41.667 2.30 0.00 0.00 1.90
2845 2890 5.964477 AGGAAGAAGGGAGTACATGTTATGA 59.036 40.000 2.30 0.00 0.00 2.15
2846 2891 6.443849 AGGAAGAAGGGAGTACATGTTATGAA 59.556 38.462 2.30 0.00 0.00 2.57
2847 2892 7.037586 AGGAAGAAGGGAGTACATGTTATGAAA 60.038 37.037 2.30 0.00 0.00 2.69
2848 2893 7.775561 GGAAGAAGGGAGTACATGTTATGAAAT 59.224 37.037 2.30 0.00 0.00 2.17
2849 2894 9.832445 GAAGAAGGGAGTACATGTTATGAAATA 57.168 33.333 2.30 0.00 0.00 1.40
2884 2929 5.796350 AACTAATTTGGTGTCGTAGATGC 57.204 39.130 0.00 0.00 40.67 3.91
2938 2986 4.696479 ATAGGACTTTGGGCTATGACTG 57.304 45.455 0.00 0.00 0.00 3.51
2947 2995 1.134670 GGGCTATGACTGTCTGTCCAC 60.135 57.143 9.51 0.00 44.75 4.02
2963 3011 1.137086 TCCACGGAGCTTCAATCTAGC 59.863 52.381 0.00 0.00 38.93 3.42
2966 3014 1.216122 CGGAGCTTCAATCTAGCAGC 58.784 55.000 0.00 0.00 41.11 5.25
2981 3029 1.741706 AGCAGCAATTCCATTCACTCG 59.258 47.619 0.00 0.00 0.00 4.18
2997 3045 2.981805 CACTCGCCACATGAACAAAATG 59.018 45.455 0.00 0.00 0.00 2.32
3007 3055 7.257722 CCACATGAACAAAATGTATACTTCCC 58.742 38.462 0.00 0.00 36.10 3.97
3017 3065 4.675976 TGTATACTTCCCCCGTTACATG 57.324 45.455 4.17 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.539825 TTGACATGCATTAACATTTTGTTAGTT 57.460 25.926 0.00 0.00 42.93 2.24
1 2 9.195411 CTTGACATGCATTAACATTTTGTTAGT 57.805 29.630 0.00 0.00 42.93 2.24
2 3 9.409312 TCTTGACATGCATTAACATTTTGTTAG 57.591 29.630 0.00 0.00 42.93 2.34
4 5 8.659925 TTCTTGACATGCATTAACATTTTGTT 57.340 26.923 0.00 0.00 43.88 2.83
6 7 9.932699 TTTTTCTTGACATGCATTAACATTTTG 57.067 25.926 0.00 0.00 0.00 2.44
17 18 9.361315 CAATGAGATAATTTTTCTTGACATGCA 57.639 29.630 0.00 0.00 0.00 3.96
18 19 9.577110 TCAATGAGATAATTTTTCTTGACATGC 57.423 29.630 0.00 0.00 0.00 4.06
41 42 9.834628 GGAAACTATGTTCAAATACGAATTCAA 57.165 29.630 6.22 0.00 0.00 2.69
42 43 9.004717 TGGAAACTATGTTCAAATACGAATTCA 57.995 29.630 6.22 0.00 0.00 2.57
43 44 9.834628 TTGGAAACTATGTTCAAATACGAATTC 57.165 29.630 0.00 0.00 0.00 2.17
69 70 9.462174 CACGCATGTCACCAAATATTATATTTT 57.538 29.630 7.40 0.00 0.00 1.82
70 71 8.845227 TCACGCATGTCACCAAATATTATATTT 58.155 29.630 4.51 4.51 0.00 1.40
71 72 8.389779 TCACGCATGTCACCAAATATTATATT 57.610 30.769 0.00 0.00 0.00 1.28
72 73 7.977789 TCACGCATGTCACCAAATATTATAT 57.022 32.000 0.00 0.00 0.00 0.86
73 74 7.281100 TGTTCACGCATGTCACCAAATATTATA 59.719 33.333 0.00 0.00 0.00 0.98
74 75 6.094742 TGTTCACGCATGTCACCAAATATTAT 59.905 34.615 0.00 0.00 0.00 1.28
75 76 5.412904 TGTTCACGCATGTCACCAAATATTA 59.587 36.000 0.00 0.00 0.00 0.98
76 77 4.217334 TGTTCACGCATGTCACCAAATATT 59.783 37.500 0.00 0.00 0.00 1.28
77 78 3.755905 TGTTCACGCATGTCACCAAATAT 59.244 39.130 0.00 0.00 0.00 1.28
78 79 3.142174 TGTTCACGCATGTCACCAAATA 58.858 40.909 0.00 0.00 0.00 1.40
79 80 1.952990 TGTTCACGCATGTCACCAAAT 59.047 42.857 0.00 0.00 0.00 2.32
80 81 1.383523 TGTTCACGCATGTCACCAAA 58.616 45.000 0.00 0.00 0.00 3.28
81 82 1.603456 ATGTTCACGCATGTCACCAA 58.397 45.000 0.00 0.00 0.00 3.67
82 83 1.603456 AATGTTCACGCATGTCACCA 58.397 45.000 0.00 0.00 0.00 4.17
83 84 2.704725 AAATGTTCACGCATGTCACC 57.295 45.000 0.00 0.00 0.00 4.02
84 85 3.371168 ACAAAATGTTCACGCATGTCAC 58.629 40.909 0.00 0.00 0.00 3.67
85 86 3.706802 ACAAAATGTTCACGCATGTCA 57.293 38.095 0.00 0.00 0.00 3.58
86 87 5.212194 ACTAACAAAATGTTCACGCATGTC 58.788 37.500 0.00 0.00 40.22 3.06
87 88 5.181690 ACTAACAAAATGTTCACGCATGT 57.818 34.783 0.00 0.00 40.22 3.21
88 89 6.509317 AAACTAACAAAATGTTCACGCATG 57.491 33.333 0.00 0.00 40.22 4.06
89 90 8.810652 ATTAAACTAACAAAATGTTCACGCAT 57.189 26.923 0.00 0.00 40.22 4.73
90 91 8.132362 AGATTAAACTAACAAAATGTTCACGCA 58.868 29.630 0.00 0.00 40.22 5.24
91 92 8.502161 AGATTAAACTAACAAAATGTTCACGC 57.498 30.769 0.00 0.00 40.22 5.34
107 108 8.592809 TGCCAAATTTTGACCATAGATTAAACT 58.407 29.630 10.72 0.00 0.00 2.66
108 109 8.655970 GTGCCAAATTTTGACCATAGATTAAAC 58.344 33.333 10.72 0.00 0.00 2.01
109 110 7.543868 CGTGCCAAATTTTGACCATAGATTAAA 59.456 33.333 10.72 0.00 0.00 1.52
110 111 7.032580 CGTGCCAAATTTTGACCATAGATTAA 58.967 34.615 10.72 0.00 0.00 1.40
111 112 6.375736 TCGTGCCAAATTTTGACCATAGATTA 59.624 34.615 10.72 0.00 0.00 1.75
112 113 5.184864 TCGTGCCAAATTTTGACCATAGATT 59.815 36.000 10.72 0.00 0.00 2.40
113 114 4.704540 TCGTGCCAAATTTTGACCATAGAT 59.295 37.500 10.72 0.00 0.00 1.98
114 115 4.075682 TCGTGCCAAATTTTGACCATAGA 58.924 39.130 10.72 8.13 0.00 1.98
115 116 4.433186 TCGTGCCAAATTTTGACCATAG 57.567 40.909 10.72 6.37 0.00 2.23
116 117 4.855715 TTCGTGCCAAATTTTGACCATA 57.144 36.364 10.72 0.00 0.00 2.74
117 118 3.742433 TTCGTGCCAAATTTTGACCAT 57.258 38.095 10.72 0.00 0.00 3.55
118 119 3.526931 TTTCGTGCCAAATTTTGACCA 57.473 38.095 10.72 4.80 0.00 4.02
119 120 4.985409 TGTATTTCGTGCCAAATTTTGACC 59.015 37.500 10.72 2.35 0.00 4.02
120 121 6.517914 TTGTATTTCGTGCCAAATTTTGAC 57.482 33.333 10.72 0.00 0.00 3.18
121 122 6.146837 CCATTGTATTTCGTGCCAAATTTTGA 59.853 34.615 10.72 0.00 0.00 2.69
122 123 6.305639 CCATTGTATTTCGTGCCAAATTTTG 58.694 36.000 1.99 1.99 0.00 2.44
123 124 5.411053 CCCATTGTATTTCGTGCCAAATTTT 59.589 36.000 0.00 0.00 0.00 1.82
124 125 4.934602 CCCATTGTATTTCGTGCCAAATTT 59.065 37.500 0.00 0.00 0.00 1.82
125 126 4.502962 CCCATTGTATTTCGTGCCAAATT 58.497 39.130 0.00 0.00 0.00 1.82
126 127 3.118811 CCCCATTGTATTTCGTGCCAAAT 60.119 43.478 0.00 0.00 0.00 2.32
127 128 2.232452 CCCCATTGTATTTCGTGCCAAA 59.768 45.455 0.00 0.00 0.00 3.28
128 129 1.821753 CCCCATTGTATTTCGTGCCAA 59.178 47.619 0.00 0.00 0.00 4.52
129 130 1.004862 TCCCCATTGTATTTCGTGCCA 59.995 47.619 0.00 0.00 0.00 4.92
130 131 1.404035 GTCCCCATTGTATTTCGTGCC 59.596 52.381 0.00 0.00 0.00 5.01
131 132 1.404035 GGTCCCCATTGTATTTCGTGC 59.596 52.381 0.00 0.00 0.00 5.34
132 133 2.717390 TGGTCCCCATTGTATTTCGTG 58.283 47.619 0.00 0.00 0.00 4.35
133 134 3.443145 TTGGTCCCCATTGTATTTCGT 57.557 42.857 0.00 0.00 31.53 3.85
134 135 6.270064 GTTTATTGGTCCCCATTGTATTTCG 58.730 40.000 0.00 0.00 31.53 3.46
135 136 6.407639 GGGTTTATTGGTCCCCATTGTATTTC 60.408 42.308 0.00 0.00 37.09 2.17
136 137 5.427157 GGGTTTATTGGTCCCCATTGTATTT 59.573 40.000 0.00 0.00 37.09 1.40
137 138 4.966168 GGGTTTATTGGTCCCCATTGTATT 59.034 41.667 0.00 0.00 37.09 1.89
138 139 4.552674 GGGTTTATTGGTCCCCATTGTAT 58.447 43.478 0.00 0.00 37.09 2.29
139 140 3.625211 CGGGTTTATTGGTCCCCATTGTA 60.625 47.826 0.00 0.00 38.09 2.41
140 141 2.827755 GGGTTTATTGGTCCCCATTGT 58.172 47.619 0.00 0.00 37.09 2.71
141 142 1.754226 CGGGTTTATTGGTCCCCATTG 59.246 52.381 0.00 0.00 38.09 2.82
142 143 1.342574 CCGGGTTTATTGGTCCCCATT 60.343 52.381 0.00 0.00 38.09 3.16
143 144 0.260523 CCGGGTTTATTGGTCCCCAT 59.739 55.000 0.00 0.00 38.09 4.00
144 145 0.845543 TCCGGGTTTATTGGTCCCCA 60.846 55.000 0.00 0.00 38.09 4.96
145 146 0.394762 GTCCGGGTTTATTGGTCCCC 60.395 60.000 0.00 0.00 38.09 4.81
146 147 0.745486 CGTCCGGGTTTATTGGTCCC 60.745 60.000 0.00 0.00 37.98 4.46
147 148 0.745486 CCGTCCGGGTTTATTGGTCC 60.745 60.000 0.00 0.00 0.00 4.46
148 149 0.249955 TCCGTCCGGGTTTATTGGTC 59.750 55.000 0.00 0.00 37.00 4.02
149 150 0.251073 CTCCGTCCGGGTTTATTGGT 59.749 55.000 0.00 0.00 37.00 3.67
150 151 0.538118 TCTCCGTCCGGGTTTATTGG 59.462 55.000 0.00 0.00 37.00 3.16
151 152 2.614829 ATCTCCGTCCGGGTTTATTG 57.385 50.000 0.00 0.00 37.00 1.90
152 153 3.303049 ACTATCTCCGTCCGGGTTTATT 58.697 45.455 0.00 0.00 37.00 1.40
153 154 2.954792 ACTATCTCCGTCCGGGTTTAT 58.045 47.619 0.00 0.00 37.00 1.40
154 155 2.442236 ACTATCTCCGTCCGGGTTTA 57.558 50.000 0.00 0.00 37.00 2.01
155 156 2.442236 TACTATCTCCGTCCGGGTTT 57.558 50.000 0.00 0.00 37.00 3.27
156 157 2.107901 AGATACTATCTCCGTCCGGGTT 59.892 50.000 0.00 0.00 33.42 4.11
157 158 1.704070 AGATACTATCTCCGTCCGGGT 59.296 52.381 0.00 0.00 33.42 5.28
158 159 2.493414 AGATACTATCTCCGTCCGGG 57.507 55.000 0.00 0.00 33.42 5.73
213 214 9.784531 TGGCATTTTTGTTTATTAAAAGATGGA 57.215 25.926 0.00 0.00 0.00 3.41
226 227 9.941325 TCATATTAAGACATGGCATTTTTGTTT 57.059 25.926 0.00 0.00 0.00 2.83
227 228 9.941325 TTCATATTAAGACATGGCATTTTTGTT 57.059 25.926 0.00 0.00 0.00 2.83
228 229 9.941325 TTTCATATTAAGACATGGCATTTTTGT 57.059 25.926 0.00 0.00 0.00 2.83
233 234 9.754382 GACATTTTCATATTAAGACATGGCATT 57.246 29.630 0.00 0.00 0.00 3.56
234 235 8.916062 TGACATTTTCATATTAAGACATGGCAT 58.084 29.630 0.00 0.00 0.00 4.40
235 236 8.291191 TGACATTTTCATATTAAGACATGGCA 57.709 30.769 0.00 0.00 0.00 4.92
236 237 9.403110 GATGACATTTTCATATTAAGACATGGC 57.597 33.333 0.00 0.00 45.67 4.40
256 257 9.507329 GGCATTTATTCCTTATAAGAGATGACA 57.493 33.333 14.28 0.00 28.92 3.58
257 258 9.507329 TGGCATTTATTCCTTATAAGAGATGAC 57.493 33.333 14.28 7.52 29.04 3.06
261 262 9.950496 GAGATGGCATTTATTCCTTATAAGAGA 57.050 33.333 14.28 6.79 30.62 3.10
262 263 9.956640 AGAGATGGCATTTATTCCTTATAAGAG 57.043 33.333 14.28 4.52 30.62 2.85
384 385 9.410556 GCAAAGTTTTGTTATTGTACATGATCT 57.589 29.630 0.00 0.00 40.24 2.75
385 386 9.410556 AGCAAAGTTTTGTTATTGTACATGATC 57.589 29.630 0.00 0.00 40.24 2.92
386 387 9.762933 AAGCAAAGTTTTGTTATTGTACATGAT 57.237 25.926 0.00 0.00 40.24 2.45
387 388 9.029243 CAAGCAAAGTTTTGTTATTGTACATGA 57.971 29.630 0.00 0.00 40.24 3.07
388 389 8.816144 ACAAGCAAAGTTTTGTTATTGTACATG 58.184 29.630 16.19 0.00 38.45 3.21
389 390 8.940768 ACAAGCAAAGTTTTGTTATTGTACAT 57.059 26.923 16.19 0.00 38.45 2.29
390 391 7.219154 CGACAAGCAAAGTTTTGTTATTGTACA 59.781 33.333 17.01 0.00 39.33 2.90
391 392 7.429920 TCGACAAGCAAAGTTTTGTTATTGTAC 59.570 33.333 17.01 12.58 39.33 2.90
392 393 7.473366 TCGACAAGCAAAGTTTTGTTATTGTA 58.527 30.769 17.01 7.36 39.33 2.41
393 394 6.326375 TCGACAAGCAAAGTTTTGTTATTGT 58.674 32.000 17.01 17.01 40.55 2.71
394 395 6.804534 TCGACAAGCAAAGTTTTGTTATTG 57.195 33.333 6.48 10.48 40.24 1.90
395 396 6.809196 TGTTCGACAAGCAAAGTTTTGTTATT 59.191 30.769 6.48 0.00 40.24 1.40
396 397 6.326375 TGTTCGACAAGCAAAGTTTTGTTAT 58.674 32.000 6.48 0.00 40.24 1.89
397 398 5.700846 TGTTCGACAAGCAAAGTTTTGTTA 58.299 33.333 6.48 0.00 40.24 2.41
398 399 4.551388 TGTTCGACAAGCAAAGTTTTGTT 58.449 34.783 6.48 0.00 40.24 2.83
399 400 4.167554 TGTTCGACAAGCAAAGTTTTGT 57.832 36.364 6.48 0.00 40.24 2.83
400 401 5.508124 TTTGTTCGACAAGCAAAGTTTTG 57.492 34.783 0.28 0.28 39.53 2.44
401 402 5.463724 TGTTTTGTTCGACAAGCAAAGTTTT 59.536 32.000 0.00 0.00 39.53 2.43
402 403 4.985409 TGTTTTGTTCGACAAGCAAAGTTT 59.015 33.333 0.00 0.00 39.53 2.66
403 404 4.551388 TGTTTTGTTCGACAAGCAAAGTT 58.449 34.783 0.00 0.00 39.53 2.66
404 405 4.167554 TGTTTTGTTCGACAAGCAAAGT 57.832 36.364 0.00 0.00 39.53 2.66
405 406 5.508124 TTTGTTTTGTTCGACAAGCAAAG 57.492 34.783 17.40 0.00 39.53 2.77
406 407 5.907197 TTTTGTTTTGTTCGACAAGCAAA 57.093 30.435 17.40 17.40 39.53 3.68
407 408 5.907197 TTTTTGTTTTGTTCGACAAGCAA 57.093 30.435 0.00 0.94 39.53 3.91
408 409 7.008810 GTCTATTTTTGTTTTGTTCGACAAGCA 59.991 33.333 0.00 0.00 39.53 3.91
409 410 7.008810 TGTCTATTTTTGTTTTGTTCGACAAGC 59.991 33.333 0.00 0.00 39.53 4.01
410 411 8.388319 TGTCTATTTTTGTTTTGTTCGACAAG 57.612 30.769 0.00 0.00 39.53 3.16
411 412 8.744008 TTGTCTATTTTTGTTTTGTTCGACAA 57.256 26.923 0.00 0.00 36.11 3.18
412 413 8.640291 GTTTGTCTATTTTTGTTTTGTTCGACA 58.360 29.630 0.00 0.00 0.00 4.35
413 414 8.856247 AGTTTGTCTATTTTTGTTTTGTTCGAC 58.144 29.630 0.00 0.00 0.00 4.20
414 415 8.973835 AGTTTGTCTATTTTTGTTTTGTTCGA 57.026 26.923 0.00 0.00 0.00 3.71
446 447 6.996509 ACTATGTCACATGGCATTTCTTTTT 58.003 32.000 3.97 0.00 41.22 1.94
447 448 6.594788 ACTATGTCACATGGCATTTCTTTT 57.405 33.333 3.97 0.00 41.22 2.27
448 449 6.594788 AACTATGTCACATGGCATTTCTTT 57.405 33.333 3.97 0.00 41.22 2.52
449 450 6.209192 TCAAACTATGTCACATGGCATTTCTT 59.791 34.615 3.97 0.00 41.22 2.52
450 451 5.711506 TCAAACTATGTCACATGGCATTTCT 59.288 36.000 3.97 0.00 41.22 2.52
451 452 5.953183 TCAAACTATGTCACATGGCATTTC 58.047 37.500 3.97 0.00 41.22 2.17
452 453 5.981088 TCAAACTATGTCACATGGCATTT 57.019 34.783 3.97 0.00 41.22 2.32
453 454 5.981088 TTCAAACTATGTCACATGGCATT 57.019 34.783 3.97 0.00 41.22 3.56
454 455 5.981088 TTTCAAACTATGTCACATGGCAT 57.019 34.783 0.00 4.13 43.63 4.40
455 456 5.781210 TTTTCAAACTATGTCACATGGCA 57.219 34.783 0.00 0.00 0.00 4.92
456 457 7.656707 AAATTTTCAAACTATGTCACATGGC 57.343 32.000 0.00 0.00 0.00 4.40
528 529 5.833667 CCCAGTCTCCCTTTTACTTCTTTTT 59.166 40.000 0.00 0.00 0.00 1.94
529 530 5.133830 TCCCAGTCTCCCTTTTACTTCTTTT 59.866 40.000 0.00 0.00 0.00 2.27
530 531 4.663592 TCCCAGTCTCCCTTTTACTTCTTT 59.336 41.667 0.00 0.00 0.00 2.52
531 532 4.240323 TCCCAGTCTCCCTTTTACTTCTT 58.760 43.478 0.00 0.00 0.00 2.52
532 533 3.870559 TCCCAGTCTCCCTTTTACTTCT 58.129 45.455 0.00 0.00 0.00 2.85
533 534 4.846168 ATCCCAGTCTCCCTTTTACTTC 57.154 45.455 0.00 0.00 0.00 3.01
534 535 4.852697 AGAATCCCAGTCTCCCTTTTACTT 59.147 41.667 0.00 0.00 0.00 2.24
535 536 4.439860 AGAATCCCAGTCTCCCTTTTACT 58.560 43.478 0.00 0.00 0.00 2.24
536 537 4.846168 AGAATCCCAGTCTCCCTTTTAC 57.154 45.455 0.00 0.00 0.00 2.01
537 538 5.191124 GGTTAGAATCCCAGTCTCCCTTTTA 59.809 44.000 0.00 0.00 0.00 1.52
538 539 4.018324 GGTTAGAATCCCAGTCTCCCTTTT 60.018 45.833 0.00 0.00 0.00 2.27
539 540 3.523972 GGTTAGAATCCCAGTCTCCCTTT 59.476 47.826 0.00 0.00 0.00 3.11
540 541 3.116174 GGTTAGAATCCCAGTCTCCCTT 58.884 50.000 0.00 0.00 0.00 3.95
541 542 2.045885 TGGTTAGAATCCCAGTCTCCCT 59.954 50.000 0.00 0.00 0.00 4.20
542 543 2.478292 TGGTTAGAATCCCAGTCTCCC 58.522 52.381 0.00 0.00 0.00 4.30
543 544 3.775316 TCTTGGTTAGAATCCCAGTCTCC 59.225 47.826 0.00 0.00 31.04 3.71
544 545 5.365314 AGATCTTGGTTAGAATCCCAGTCTC 59.635 44.000 0.00 0.00 36.22 3.36
545 546 5.284582 AGATCTTGGTTAGAATCCCAGTCT 58.715 41.667 0.00 0.00 36.22 3.24
546 547 5.365314 AGAGATCTTGGTTAGAATCCCAGTC 59.635 44.000 0.00 0.00 36.22 3.51
547 548 5.284582 AGAGATCTTGGTTAGAATCCCAGT 58.715 41.667 0.00 0.00 36.22 4.00
548 549 5.885449 AGAGATCTTGGTTAGAATCCCAG 57.115 43.478 0.00 0.00 36.22 4.45
549 550 6.327626 CCTAAGAGATCTTGGTTAGAATCCCA 59.672 42.308 16.44 0.00 36.22 4.37
550 551 6.327887 ACCTAAGAGATCTTGGTTAGAATCCC 59.672 42.308 16.44 0.00 35.40 3.85
551 552 7.368198 ACCTAAGAGATCTTGGTTAGAATCC 57.632 40.000 16.44 0.00 35.40 3.01
557 558 9.992442 CCCTATATACCTAAGAGATCTTGGTTA 57.008 37.037 16.55 4.46 37.95 2.85
558 559 8.465971 ACCCTATATACCTAAGAGATCTTGGTT 58.534 37.037 16.55 2.60 37.95 3.67
559 560 8.013806 ACCCTATATACCTAAGAGATCTTGGT 57.986 38.462 15.97 15.97 39.21 3.67
560 561 7.283580 CGACCCTATATACCTAAGAGATCTTGG 59.716 44.444 5.34 2.24 37.40 3.61
561 562 7.201750 GCGACCCTATATACCTAAGAGATCTTG 60.202 44.444 5.34 0.00 37.40 3.02
562 563 6.829811 GCGACCCTATATACCTAAGAGATCTT 59.170 42.308 0.00 0.07 39.85 2.40
563 564 6.358991 GCGACCCTATATACCTAAGAGATCT 58.641 44.000 0.00 0.00 0.00 2.75
564 565 5.236911 CGCGACCCTATATACCTAAGAGATC 59.763 48.000 0.00 0.00 0.00 2.75
565 566 5.124645 CGCGACCCTATATACCTAAGAGAT 58.875 45.833 0.00 0.00 0.00 2.75
566 567 4.019860 ACGCGACCCTATATACCTAAGAGA 60.020 45.833 15.93 0.00 0.00 3.10
567 568 4.260170 ACGCGACCCTATATACCTAAGAG 58.740 47.826 15.93 0.00 0.00 2.85
568 569 4.256920 GACGCGACCCTATATACCTAAGA 58.743 47.826 15.93 0.00 0.00 2.10
569 570 4.005650 TGACGCGACCCTATATACCTAAG 58.994 47.826 15.93 0.00 0.00 2.18
570 571 3.753272 GTGACGCGACCCTATATACCTAA 59.247 47.826 15.93 0.00 0.00 2.69
571 572 3.008375 AGTGACGCGACCCTATATACCTA 59.992 47.826 15.93 0.00 0.00 3.08
572 573 2.157738 GTGACGCGACCCTATATACCT 58.842 52.381 15.93 0.00 0.00 3.08
573 574 2.157738 AGTGACGCGACCCTATATACC 58.842 52.381 15.93 0.00 0.00 2.73
574 575 3.181512 GCTAGTGACGCGACCCTATATAC 60.182 52.174 15.93 0.00 0.00 1.47
575 576 3.005554 GCTAGTGACGCGACCCTATATA 58.994 50.000 15.93 0.00 0.00 0.86
576 577 1.811359 GCTAGTGACGCGACCCTATAT 59.189 52.381 15.93 0.00 0.00 0.86
577 578 1.233019 GCTAGTGACGCGACCCTATA 58.767 55.000 15.93 0.00 0.00 1.31
578 579 0.750546 TGCTAGTGACGCGACCCTAT 60.751 55.000 15.93 0.00 0.00 2.57
579 580 0.961857 TTGCTAGTGACGCGACCCTA 60.962 55.000 15.93 6.90 0.00 3.53
580 581 1.812686 TTTGCTAGTGACGCGACCCT 61.813 55.000 15.93 5.80 0.00 4.34
581 582 0.739813 ATTTGCTAGTGACGCGACCC 60.740 55.000 15.93 0.00 0.00 4.46
582 583 0.370273 CATTTGCTAGTGACGCGACC 59.630 55.000 15.93 4.44 0.00 4.79
583 584 0.247301 GCATTTGCTAGTGACGCGAC 60.247 55.000 15.93 7.62 38.21 5.19
584 585 1.682867 CGCATTTGCTAGTGACGCGA 61.683 55.000 15.93 0.00 43.64 5.87
585 586 1.296145 CGCATTTGCTAGTGACGCG 60.296 57.895 3.53 3.53 39.32 6.01
586 587 1.060937 CCGCATTTGCTAGTGACGC 59.939 57.895 0.51 0.00 39.32 5.19
587 588 0.095245 CACCGCATTTGCTAGTGACG 59.905 55.000 14.04 0.00 42.11 4.35
588 589 0.447801 CCACCGCATTTGCTAGTGAC 59.552 55.000 18.54 0.00 42.11 3.67
589 590 1.305219 GCCACCGCATTTGCTAGTGA 61.305 55.000 18.54 0.00 42.11 3.41
590 591 1.137404 GCCACCGCATTTGCTAGTG 59.863 57.895 12.87 12.87 40.44 2.74
591 592 1.002134 AGCCACCGCATTTGCTAGT 60.002 52.632 0.51 0.00 39.32 2.57
592 593 1.026182 TCAGCCACCGCATTTGCTAG 61.026 55.000 0.51 0.00 39.32 3.42
593 594 0.607762 TTCAGCCACCGCATTTGCTA 60.608 50.000 0.51 0.00 39.32 3.49
594 595 1.462731 TTTCAGCCACCGCATTTGCT 61.463 50.000 0.51 0.00 39.32 3.91
595 596 0.599728 TTTTCAGCCACCGCATTTGC 60.600 50.000 0.00 0.00 37.52 3.68
596 597 1.727880 CATTTTCAGCCACCGCATTTG 59.272 47.619 0.00 0.00 37.52 2.32
597 598 1.344114 ACATTTTCAGCCACCGCATTT 59.656 42.857 0.00 0.00 37.52 2.32
598 599 0.968405 ACATTTTCAGCCACCGCATT 59.032 45.000 0.00 0.00 37.52 3.56
599 600 0.968405 AACATTTTCAGCCACCGCAT 59.032 45.000 0.00 0.00 37.52 4.73
600 601 1.610363 TAACATTTTCAGCCACCGCA 58.390 45.000 0.00 0.00 37.52 5.69
601 602 2.529151 CATAACATTTTCAGCCACCGC 58.471 47.619 0.00 0.00 0.00 5.68
602 603 2.094803 TGCATAACATTTTCAGCCACCG 60.095 45.455 0.00 0.00 0.00 4.94
603 604 3.591196 TGCATAACATTTTCAGCCACC 57.409 42.857 0.00 0.00 0.00 4.61
604 605 3.866910 CCATGCATAACATTTTCAGCCAC 59.133 43.478 0.00 0.00 36.64 5.01
605 606 3.514706 ACCATGCATAACATTTTCAGCCA 59.485 39.130 0.00 0.00 36.64 4.75
606 607 4.127566 ACCATGCATAACATTTTCAGCC 57.872 40.909 0.00 0.00 36.64 4.85
607 608 6.292488 GCAATACCATGCATAACATTTTCAGC 60.292 38.462 0.00 0.00 45.70 4.26
608 609 6.074729 CGCAATACCATGCATAACATTTTCAG 60.075 38.462 0.00 0.00 46.76 3.02
609 610 5.747675 CGCAATACCATGCATAACATTTTCA 59.252 36.000 0.00 0.00 46.76 2.69
610 611 5.748152 ACGCAATACCATGCATAACATTTTC 59.252 36.000 0.00 0.00 46.76 2.29
611 612 5.659463 ACGCAATACCATGCATAACATTTT 58.341 33.333 0.00 0.00 46.76 1.82
612 613 5.261209 ACGCAATACCATGCATAACATTT 57.739 34.783 0.00 0.00 46.76 2.32
613 614 4.916983 ACGCAATACCATGCATAACATT 57.083 36.364 0.00 0.00 46.76 2.71
614 615 4.554526 CGAACGCAATACCATGCATAACAT 60.555 41.667 0.00 0.00 46.76 2.71
615 616 3.242576 CGAACGCAATACCATGCATAACA 60.243 43.478 0.00 0.00 46.76 2.41
616 617 3.288242 CGAACGCAATACCATGCATAAC 58.712 45.455 0.00 0.00 46.76 1.89
617 618 2.286713 GCGAACGCAATACCATGCATAA 60.287 45.455 14.26 0.00 46.76 1.90
618 619 1.262950 GCGAACGCAATACCATGCATA 59.737 47.619 14.26 0.00 46.76 3.14
619 620 0.029300 GCGAACGCAATACCATGCAT 59.971 50.000 14.26 0.00 46.76 3.96
620 621 1.024046 AGCGAACGCAATACCATGCA 61.024 50.000 20.66 0.00 46.76 3.96
621 622 0.589729 CAGCGAACGCAATACCATGC 60.590 55.000 20.66 0.00 44.88 4.06
622 623 0.027979 CCAGCGAACGCAATACCATG 59.972 55.000 20.66 8.39 44.88 3.66
623 624 0.107897 TCCAGCGAACGCAATACCAT 60.108 50.000 20.66 0.00 44.88 3.55
624 625 0.107897 ATCCAGCGAACGCAATACCA 60.108 50.000 20.66 0.00 44.88 3.25
625 626 1.014352 AATCCAGCGAACGCAATACC 58.986 50.000 20.66 0.00 44.88 2.73
626 627 2.825086 AAATCCAGCGAACGCAATAC 57.175 45.000 20.66 0.00 44.88 1.89
627 628 4.318475 CGATAAAATCCAGCGAACGCAATA 60.318 41.667 20.66 5.98 44.88 1.90
628 629 3.546020 CGATAAAATCCAGCGAACGCAAT 60.546 43.478 20.66 8.59 44.88 3.56
629 630 2.222931 CGATAAAATCCAGCGAACGCAA 60.223 45.455 20.66 6.68 44.88 4.85
630 631 1.326245 CGATAAAATCCAGCGAACGCA 59.674 47.619 20.66 1.07 44.88 5.24
631 632 1.326548 ACGATAAAATCCAGCGAACGC 59.673 47.619 11.31 11.31 42.33 4.84
632 633 3.548668 TGTACGATAAAATCCAGCGAACG 59.451 43.478 0.00 0.00 0.00 3.95
633 634 4.550255 GCTGTACGATAAAATCCAGCGAAC 60.550 45.833 0.00 0.00 34.22 3.95
634 635 3.554324 GCTGTACGATAAAATCCAGCGAA 59.446 43.478 0.00 0.00 34.22 4.70
635 636 3.120792 GCTGTACGATAAAATCCAGCGA 58.879 45.455 0.00 0.00 34.22 4.93
636 637 3.505449 GCTGTACGATAAAATCCAGCG 57.495 47.619 0.00 0.00 34.22 5.18
649 650 4.959631 TTTGAAACTACTTCGCTGTACG 57.040 40.909 0.00 0.00 45.62 3.67
650 651 6.304882 GGATTTTGAAACTACTTCGCTGTAC 58.695 40.000 0.00 0.00 36.78 2.90
651 652 5.119588 CGGATTTTGAAACTACTTCGCTGTA 59.880 40.000 0.00 0.00 36.78 2.74
652 653 4.084013 CGGATTTTGAAACTACTTCGCTGT 60.084 41.667 0.00 0.00 36.78 4.40
653 654 4.151689 TCGGATTTTGAAACTACTTCGCTG 59.848 41.667 0.00 0.00 36.78 5.18
654 655 4.151867 GTCGGATTTTGAAACTACTTCGCT 59.848 41.667 0.00 0.00 36.78 4.93
655 656 4.392216 GTCGGATTTTGAAACTACTTCGC 58.608 43.478 0.00 0.00 36.78 4.70
656 657 4.149396 ACGTCGGATTTTGAAACTACTTCG 59.851 41.667 0.00 0.00 36.78 3.79
657 658 5.371629 CACGTCGGATTTTGAAACTACTTC 58.628 41.667 0.00 0.00 34.31 3.01
658 659 4.212636 CCACGTCGGATTTTGAAACTACTT 59.787 41.667 0.00 0.00 36.56 2.24
659 660 3.744426 CCACGTCGGATTTTGAAACTACT 59.256 43.478 0.00 0.00 36.56 2.57
660 661 3.666111 GCCACGTCGGATTTTGAAACTAC 60.666 47.826 8.04 0.00 36.56 2.73
661 662 2.481185 GCCACGTCGGATTTTGAAACTA 59.519 45.455 8.04 0.00 36.56 2.24
662 663 1.265905 GCCACGTCGGATTTTGAAACT 59.734 47.619 8.04 0.00 36.56 2.66
663 664 1.265905 AGCCACGTCGGATTTTGAAAC 59.734 47.619 8.04 0.00 36.56 2.78
664 665 1.533731 GAGCCACGTCGGATTTTGAAA 59.466 47.619 8.04 0.00 36.56 2.69
665 666 1.153353 GAGCCACGTCGGATTTTGAA 58.847 50.000 8.04 0.00 36.56 2.69
666 667 0.672401 GGAGCCACGTCGGATTTTGA 60.672 55.000 8.04 0.00 36.56 2.69
667 668 1.794222 GGAGCCACGTCGGATTTTG 59.206 57.895 8.04 0.00 36.56 2.44
668 669 1.740296 CGGAGCCACGTCGGATTTT 60.740 57.895 8.04 0.00 36.56 1.82
669 670 1.956629 ATCGGAGCCACGTCGGATTT 61.957 55.000 8.04 0.00 33.89 2.17
670 671 2.351336 GATCGGAGCCACGTCGGATT 62.351 60.000 8.04 0.00 36.82 3.01
671 672 2.833582 ATCGGAGCCACGTCGGAT 60.834 61.111 8.04 1.57 36.56 4.18
672 673 3.515286 GATCGGAGCCACGTCGGA 61.515 66.667 8.04 0.00 36.56 4.55
673 674 4.570663 GGATCGGAGCCACGTCGG 62.571 72.222 7.56 0.00 38.11 4.79
674 675 4.907034 CGGATCGGAGCCACGTCG 62.907 72.222 13.43 0.00 34.94 5.12
680 681 4.899239 CTGGTGCGGATCGGAGCC 62.899 72.222 1.21 1.21 44.38 4.70
681 682 4.899239 CCTGGTGCGGATCGGAGC 62.899 72.222 0.00 4.20 45.14 4.70
682 683 2.032860 AATCCTGGTGCGGATCGGAG 62.033 60.000 0.00 0.00 42.89 4.63
683 684 2.028125 GAATCCTGGTGCGGATCGGA 62.028 60.000 0.00 0.00 42.89 4.55
684 685 1.595382 GAATCCTGGTGCGGATCGG 60.595 63.158 0.00 0.00 42.89 4.18
685 686 1.951130 CGAATCCTGGTGCGGATCG 60.951 63.158 0.00 0.00 42.89 3.69
686 687 1.144057 ACGAATCCTGGTGCGGATC 59.856 57.895 0.00 0.00 42.89 3.36
687 688 1.153369 CACGAATCCTGGTGCGGAT 60.153 57.895 0.00 0.00 45.59 4.18
688 689 2.264480 CACGAATCCTGGTGCGGA 59.736 61.111 0.00 0.00 37.50 5.54
692 693 0.742281 CCTCTGCACGAATCCTGGTG 60.742 60.000 0.00 0.00 37.22 4.17
693 694 0.904865 TCCTCTGCACGAATCCTGGT 60.905 55.000 0.00 0.00 0.00 4.00
694 695 0.250234 TTCCTCTGCACGAATCCTGG 59.750 55.000 0.00 0.00 0.00 4.45
695 696 2.099141 TTTCCTCTGCACGAATCCTG 57.901 50.000 0.00 0.00 0.00 3.86
696 697 2.420687 GGATTTCCTCTGCACGAATCCT 60.421 50.000 11.59 0.00 41.48 3.24
697 698 1.943340 GGATTTCCTCTGCACGAATCC 59.057 52.381 0.00 0.00 39.05 3.01
698 699 2.632377 TGGATTTCCTCTGCACGAATC 58.368 47.619 0.00 0.00 36.82 2.52
699 700 2.787473 TGGATTTCCTCTGCACGAAT 57.213 45.000 0.00 0.00 36.82 3.34
700 701 2.559698 TTGGATTTCCTCTGCACGAA 57.440 45.000 0.00 0.00 36.82 3.85
701 702 2.358957 CATTGGATTTCCTCTGCACGA 58.641 47.619 0.00 0.00 36.82 4.35
702 703 1.402968 CCATTGGATTTCCTCTGCACG 59.597 52.381 0.00 0.00 36.82 5.34
703 704 1.753073 CCCATTGGATTTCCTCTGCAC 59.247 52.381 3.62 0.00 36.82 4.57
704 705 1.640149 TCCCATTGGATTTCCTCTGCA 59.360 47.619 3.62 0.00 35.03 4.41
705 706 2.092212 TCTCCCATTGGATTTCCTCTGC 60.092 50.000 3.62 0.00 40.80 4.26
706 707 3.201708 ACTCTCCCATTGGATTTCCTCTG 59.798 47.826 3.62 0.00 40.80 3.35
707 708 3.201708 CACTCTCCCATTGGATTTCCTCT 59.798 47.826 3.62 0.00 40.80 3.69
708 709 3.549794 CACTCTCCCATTGGATTTCCTC 58.450 50.000 3.62 0.00 40.80 3.71
709 710 2.357569 GCACTCTCCCATTGGATTTCCT 60.358 50.000 3.62 0.00 40.80 3.36
710 711 2.027385 GCACTCTCCCATTGGATTTCC 58.973 52.381 3.62 0.00 40.80 3.13
711 712 1.672881 CGCACTCTCCCATTGGATTTC 59.327 52.381 3.62 0.00 40.80 2.17
712 713 1.755179 CGCACTCTCCCATTGGATTT 58.245 50.000 3.62 0.00 40.80 2.17
713 714 0.749454 GCGCACTCTCCCATTGGATT 60.749 55.000 0.30 0.00 40.80 3.01
714 715 1.153086 GCGCACTCTCCCATTGGAT 60.153 57.895 0.30 0.00 40.80 3.41
715 716 2.268920 GCGCACTCTCCCATTGGA 59.731 61.111 0.30 0.00 38.75 3.53
716 717 3.197790 CGCGCACTCTCCCATTGG 61.198 66.667 8.75 0.00 0.00 3.16
717 718 1.970917 GAACGCGCACTCTCCCATTG 61.971 60.000 5.73 0.00 0.00 2.82
718 719 1.741770 GAACGCGCACTCTCCCATT 60.742 57.895 5.73 0.00 0.00 3.16
719 720 2.125512 GAACGCGCACTCTCCCAT 60.126 61.111 5.73 0.00 0.00 4.00
720 721 4.717629 CGAACGCGCACTCTCCCA 62.718 66.667 5.73 0.00 0.00 4.37
731 732 4.179579 GGCAATCCCAGCGAACGC 62.180 66.667 11.31 11.31 42.33 4.84
741 742 4.483243 TTCGCTCGGGGGCAATCC 62.483 66.667 0.00 0.00 0.00 3.01
742 743 3.202706 GTTCGCTCGGGGGCAATC 61.203 66.667 0.00 0.00 0.00 2.67
747 748 4.367023 TGAACGTTCGCTCGGGGG 62.367 66.667 22.48 0.00 34.94 5.40
748 749 3.110178 GTGAACGTTCGCTCGGGG 61.110 66.667 29.66 0.00 34.94 5.73
749 750 3.110178 GGTGAACGTTCGCTCGGG 61.110 66.667 33.54 0.00 37.80 5.14
750 751 2.355363 TGGTGAACGTTCGCTCGG 60.355 61.111 33.54 0.00 37.80 4.63
751 752 1.213094 AACTGGTGAACGTTCGCTCG 61.213 55.000 33.54 26.66 37.80 5.03
752 753 1.454653 GTAACTGGTGAACGTTCGCTC 59.545 52.381 33.54 25.20 37.80 5.03
753 754 1.068127 AGTAACTGGTGAACGTTCGCT 59.932 47.619 33.54 20.45 37.80 4.93
754 755 1.494824 AGTAACTGGTGAACGTTCGC 58.505 50.000 29.23 29.23 36.98 4.70
755 756 5.442390 CGAAATAGTAACTGGTGAACGTTCG 60.442 44.000 22.48 11.14 0.00 3.95
756 757 5.667156 GCGAAATAGTAACTGGTGAACGTTC 60.667 44.000 21.42 21.42 0.00 3.95
757 758 4.151157 GCGAAATAGTAACTGGTGAACGTT 59.849 41.667 0.00 0.00 0.00 3.99
758 759 3.676646 GCGAAATAGTAACTGGTGAACGT 59.323 43.478 0.00 0.00 0.00 3.99
759 760 3.241552 CGCGAAATAGTAACTGGTGAACG 60.242 47.826 0.00 0.00 0.00 3.95
760 761 3.676646 ACGCGAAATAGTAACTGGTGAAC 59.323 43.478 15.93 0.00 0.00 3.18
761 762 3.916761 ACGCGAAATAGTAACTGGTGAA 58.083 40.909 15.93 0.00 0.00 3.18
762 763 3.192001 AGACGCGAAATAGTAACTGGTGA 59.808 43.478 15.93 0.00 0.00 4.02
763 764 3.508762 AGACGCGAAATAGTAACTGGTG 58.491 45.455 15.93 0.00 0.00 4.17
764 765 3.863142 AGACGCGAAATAGTAACTGGT 57.137 42.857 15.93 0.00 0.00 4.00
765 766 6.823678 ATAAAGACGCGAAATAGTAACTGG 57.176 37.500 15.93 0.00 0.00 4.00
766 767 8.377681 TCAAATAAAGACGCGAAATAGTAACTG 58.622 33.333 15.93 0.00 0.00 3.16
767 768 8.470040 TCAAATAAAGACGCGAAATAGTAACT 57.530 30.769 15.93 0.00 0.00 2.24
768 769 9.144085 CATCAAATAAAGACGCGAAATAGTAAC 57.856 33.333 15.93 0.00 0.00 2.50
769 770 8.332464 CCATCAAATAAAGACGCGAAATAGTAA 58.668 33.333 15.93 0.00 0.00 2.24
770 771 7.042321 CCCATCAAATAAAGACGCGAAATAGTA 60.042 37.037 15.93 0.00 0.00 1.82
771 772 6.238374 CCCATCAAATAAAGACGCGAAATAGT 60.238 38.462 15.93 0.00 0.00 2.12
772 773 6.136071 CCCATCAAATAAAGACGCGAAATAG 58.864 40.000 15.93 0.00 0.00 1.73
773 774 5.504994 GCCCATCAAATAAAGACGCGAAATA 60.505 40.000 15.93 0.00 0.00 1.40
774 775 4.733523 GCCCATCAAATAAAGACGCGAAAT 60.734 41.667 15.93 0.00 0.00 2.17
775 776 3.426963 GCCCATCAAATAAAGACGCGAAA 60.427 43.478 15.93 0.00 0.00 3.46
776 777 2.096819 GCCCATCAAATAAAGACGCGAA 59.903 45.455 15.93 0.00 0.00 4.70
777 778 1.668751 GCCCATCAAATAAAGACGCGA 59.331 47.619 15.93 0.00 0.00 5.87
778 779 1.268539 GGCCCATCAAATAAAGACGCG 60.269 52.381 3.53 3.53 0.00 6.01
779 780 1.268539 CGGCCCATCAAATAAAGACGC 60.269 52.381 0.00 0.00 0.00 5.19
780 781 2.285083 TCGGCCCATCAAATAAAGACG 58.715 47.619 0.00 0.00 0.00 4.18
781 782 4.918810 ATTCGGCCCATCAAATAAAGAC 57.081 40.909 0.00 0.00 0.00 3.01
782 783 4.709397 ACAATTCGGCCCATCAAATAAAGA 59.291 37.500 0.00 0.00 0.00 2.52
783 784 5.009854 ACAATTCGGCCCATCAAATAAAG 57.990 39.130 0.00 0.00 0.00 1.85
898 899 1.301677 GCGAGTTCTTTGGCAGGAGG 61.302 60.000 0.00 0.00 0.00 4.30
1266 1274 2.433318 GTGAGCTGTGCGACCCTC 60.433 66.667 0.00 0.00 0.00 4.30
1536 1544 4.764771 ACGGGGTAGTAGGCCGCA 62.765 66.667 0.00 0.00 38.67 5.69
1794 1802 2.827921 GTTGAATTCTGCAGGGTTGGAT 59.172 45.455 15.13 0.00 0.00 3.41
1921 1929 3.050275 GCACTGGTCACCGGCTTC 61.050 66.667 1.07 0.00 32.02 3.86
1943 1951 3.823330 GGATCTGGTCGTCGGCGT 61.823 66.667 10.18 0.00 39.49 5.68
1992 2000 0.389166 CGGAGCTGGAGTCAGTCAAC 60.389 60.000 0.00 0.00 42.78 3.18
1993 2001 0.539669 TCGGAGCTGGAGTCAGTCAA 60.540 55.000 0.00 0.00 42.78 3.18
1998 2006 0.251386 ACTCTTCGGAGCTGGAGTCA 60.251 55.000 0.00 0.00 45.43 3.41
2038 2046 5.426833 AGTTTGTTCTATGGACTATGGAGCT 59.573 40.000 0.00 0.00 30.48 4.09
2041 2049 5.655090 TCGAGTTTGTTCTATGGACTATGGA 59.345 40.000 0.00 0.00 0.00 3.41
2042 2050 5.902681 TCGAGTTTGTTCTATGGACTATGG 58.097 41.667 0.00 0.00 0.00 2.74
2044 2052 7.147724 TGGATTCGAGTTTGTTCTATGGACTAT 60.148 37.037 0.00 0.00 0.00 2.12
2045 2053 6.153851 TGGATTCGAGTTTGTTCTATGGACTA 59.846 38.462 0.00 0.00 0.00 2.59
2046 2054 5.046591 TGGATTCGAGTTTGTTCTATGGACT 60.047 40.000 0.00 0.00 0.00 3.85
2047 2055 5.175859 TGGATTCGAGTTTGTTCTATGGAC 58.824 41.667 0.00 0.00 0.00 4.02
2048 2056 5.414789 TGGATTCGAGTTTGTTCTATGGA 57.585 39.130 0.00 0.00 0.00 3.41
2049 2057 5.874810 TCTTGGATTCGAGTTTGTTCTATGG 59.125 40.000 0.00 0.00 0.00 2.74
2135 2149 6.431198 ACCAAAATCACCAACATCGTATAC 57.569 37.500 0.00 0.00 0.00 1.47
2166 2181 6.486993 ACTTCTCTACACCAGTTTCCAAATTC 59.513 38.462 0.00 0.00 0.00 2.17
2192 2207 4.594123 TCTACTCAATTGTCGACACCAA 57.406 40.909 19.90 3.91 0.00 3.67
2218 2235 5.340403 CGTGATAACTTTTGTGCATGTCAAG 59.660 40.000 0.00 0.00 0.00 3.02
2228 2245 7.387948 AGCAGATAAACTCGTGATAACTTTTGT 59.612 33.333 0.00 0.00 0.00 2.83
2239 2258 4.848299 GCAGAAAAAGCAGATAAACTCGTG 59.152 41.667 0.00 0.00 0.00 4.35
2257 2276 5.664457 TGCTACTACTAGTACTACGCAGAA 58.336 41.667 0.00 0.00 28.89 3.02
2263 2282 5.816777 ACAGTGCTGCTACTACTAGTACTAC 59.183 44.000 0.00 0.00 35.63 2.73
2265 2284 4.846040 ACAGTGCTGCTACTACTAGTACT 58.154 43.478 0.00 0.00 37.78 2.73
2266 2285 4.035441 GGACAGTGCTGCTACTACTAGTAC 59.965 50.000 0.00 0.00 0.00 2.73
2267 2286 4.080469 AGGACAGTGCTGCTACTACTAGTA 60.080 45.833 1.89 1.89 0.00 1.82
2268 2287 3.018149 GGACAGTGCTGCTACTACTAGT 58.982 50.000 0.00 0.00 0.00 2.57
2269 2288 3.066064 CAGGACAGTGCTGCTACTACTAG 59.934 52.174 9.41 0.00 0.00 2.57
2282 2302 1.665916 CCGAGTGCACAGGACAGTG 60.666 63.158 22.28 2.34 42.37 3.66
2283 2303 2.134287 ACCGAGTGCACAGGACAGT 61.134 57.895 30.10 12.40 0.00 3.55
2343 2365 2.720915 ACGGAGGGAGTAGTCAACTAC 58.279 52.381 11.55 11.55 46.93 2.73
2344 2366 4.574674 TTACGGAGGGAGTAGTCAACTA 57.425 45.455 0.00 0.00 39.07 2.24
2345 2367 3.446442 TTACGGAGGGAGTAGTCAACT 57.554 47.619 0.00 0.00 42.80 3.16
2402 2424 9.462606 CCAATAGTACTCCCTTTGTAAAGAAAT 57.537 33.333 0.00 0.00 38.28 2.17
2406 2428 8.713737 GTACCAATAGTACTCCCTTTGTAAAG 57.286 38.462 0.00 0.00 46.69 1.85
2421 2443 8.422566 GCTCTAATCCAAAGTAGTACCAATAGT 58.577 37.037 0.00 0.00 0.00 2.12
2422 2444 8.421784 TGCTCTAATCCAAAGTAGTACCAATAG 58.578 37.037 0.00 0.00 0.00 1.73
2423 2445 8.313944 TGCTCTAATCCAAAGTAGTACCAATA 57.686 34.615 0.00 0.00 0.00 1.90
2425 2447 6.614694 TGCTCTAATCCAAAGTAGTACCAA 57.385 37.500 0.00 0.00 0.00 3.67
2427 2449 6.926272 CAGATGCTCTAATCCAAAGTAGTACC 59.074 42.308 0.00 0.00 0.00 3.34
2429 2451 6.098266 TGCAGATGCTCTAATCCAAAGTAGTA 59.902 38.462 6.35 0.00 42.66 1.82
2430 2452 5.104776 TGCAGATGCTCTAATCCAAAGTAGT 60.105 40.000 6.35 0.00 42.66 2.73
2431 2453 5.363101 TGCAGATGCTCTAATCCAAAGTAG 58.637 41.667 6.35 0.00 42.66 2.57
2446 2491 2.410730 GCATTTGTGTTCTTGCAGATGC 59.589 45.455 0.00 0.00 42.83 3.91
2452 2497 3.120923 CGGAAATGCATTTGTGTTCTTGC 60.121 43.478 28.67 10.80 35.67 4.01
2473 2518 8.079809 ACCAACACCTTCTAATATTTTCAAACG 58.920 33.333 0.00 0.00 0.00 3.60
2486 2531 8.598916 TGACTTATGATAAACCAACACCTTCTA 58.401 33.333 0.00 0.00 0.00 2.10
2678 2723 9.880157 ACTAAAGTTAGTACAAAGTTGAGTCAA 57.120 29.630 0.08 0.08 41.92 3.18
2679 2724 9.525409 GACTAAAGTTAGTACAAAGTTGAGTCA 57.475 33.333 13.36 0.00 43.75 3.41
2680 2725 9.747293 AGACTAAAGTTAGTACAAAGTTGAGTC 57.253 33.333 11.39 11.39 44.21 3.36
2778 2823 9.760077 CTTTGTACTCCATCCGTAAACTAATAT 57.240 33.333 0.00 0.00 0.00 1.28
2779 2824 8.752187 ACTTTGTACTCCATCCGTAAACTAATA 58.248 33.333 0.00 0.00 0.00 0.98
2780 2825 7.618137 ACTTTGTACTCCATCCGTAAACTAAT 58.382 34.615 0.00 0.00 0.00 1.73
2781 2826 6.996509 ACTTTGTACTCCATCCGTAAACTAA 58.003 36.000 0.00 0.00 0.00 2.24
2782 2827 6.594788 ACTTTGTACTCCATCCGTAAACTA 57.405 37.500 0.00 0.00 0.00 2.24
2783 2828 5.479124 ACTTTGTACTCCATCCGTAAACT 57.521 39.130 0.00 0.00 0.00 2.66
2784 2829 6.624423 TCTACTTTGTACTCCATCCGTAAAC 58.376 40.000 0.00 0.00 0.00 2.01
2785 2830 6.435277 ACTCTACTTTGTACTCCATCCGTAAA 59.565 38.462 0.00 0.00 0.00 2.01
2786 2831 5.948162 ACTCTACTTTGTACTCCATCCGTAA 59.052 40.000 0.00 0.00 0.00 3.18
2787 2832 5.503927 ACTCTACTTTGTACTCCATCCGTA 58.496 41.667 0.00 0.00 0.00 4.02
2788 2833 4.342359 ACTCTACTTTGTACTCCATCCGT 58.658 43.478 0.00 0.00 0.00 4.69
2789 2834 4.398358 TGACTCTACTTTGTACTCCATCCG 59.602 45.833 0.00 0.00 0.00 4.18
2790 2835 5.419471 AGTGACTCTACTTTGTACTCCATCC 59.581 44.000 0.00 0.00 0.00 3.51
2791 2836 6.518208 AGTGACTCTACTTTGTACTCCATC 57.482 41.667 0.00 0.00 0.00 3.51
2792 2837 6.919775 AAGTGACTCTACTTTGTACTCCAT 57.080 37.500 0.00 0.00 37.62 3.41
2793 2838 8.418597 AATAAGTGACTCTACTTTGTACTCCA 57.581 34.615 0.00 0.00 41.01 3.86
2794 2839 9.708092 AAAATAAGTGACTCTACTTTGTACTCC 57.292 33.333 0.00 0.00 41.01 3.85
2804 2849 9.589111 CCTTCTTCCTAAAATAAGTGACTCTAC 57.411 37.037 0.00 0.00 0.00 2.59
2805 2850 8.759782 CCCTTCTTCCTAAAATAAGTGACTCTA 58.240 37.037 0.00 0.00 0.00 2.43
2806 2851 7.458170 TCCCTTCTTCCTAAAATAAGTGACTCT 59.542 37.037 0.00 0.00 0.00 3.24
2807 2852 7.621796 TCCCTTCTTCCTAAAATAAGTGACTC 58.378 38.462 0.00 0.00 0.00 3.36
2808 2853 7.237887 ACTCCCTTCTTCCTAAAATAAGTGACT 59.762 37.037 0.00 0.00 0.00 3.41
2809 2854 7.395617 ACTCCCTTCTTCCTAAAATAAGTGAC 58.604 38.462 0.00 0.00 0.00 3.67
2810 2855 7.569599 ACTCCCTTCTTCCTAAAATAAGTGA 57.430 36.000 0.00 0.00 0.00 3.41
2811 2856 8.319146 TGTACTCCCTTCTTCCTAAAATAAGTG 58.681 37.037 0.00 0.00 0.00 3.16
2812 2857 8.445361 TGTACTCCCTTCTTCCTAAAATAAGT 57.555 34.615 0.00 0.00 0.00 2.24
2813 2858 9.331282 CATGTACTCCCTTCTTCCTAAAATAAG 57.669 37.037 0.00 0.00 0.00 1.73
2814 2859 8.832735 ACATGTACTCCCTTCTTCCTAAAATAA 58.167 33.333 0.00 0.00 0.00 1.40
2815 2860 8.388656 ACATGTACTCCCTTCTTCCTAAAATA 57.611 34.615 0.00 0.00 0.00 1.40
2816 2861 7.272144 ACATGTACTCCCTTCTTCCTAAAAT 57.728 36.000 0.00 0.00 0.00 1.82
2817 2862 6.697641 ACATGTACTCCCTTCTTCCTAAAA 57.302 37.500 0.00 0.00 0.00 1.52
2818 2863 6.697641 AACATGTACTCCCTTCTTCCTAAA 57.302 37.500 0.00 0.00 0.00 1.85
2819 2864 7.622081 TCATAACATGTACTCCCTTCTTCCTAA 59.378 37.037 0.00 0.00 0.00 2.69
2820 2865 7.130099 TCATAACATGTACTCCCTTCTTCCTA 58.870 38.462 0.00 0.00 0.00 2.94
2821 2866 5.964477 TCATAACATGTACTCCCTTCTTCCT 59.036 40.000 0.00 0.00 0.00 3.36
2822 2867 6.235231 TCATAACATGTACTCCCTTCTTCC 57.765 41.667 0.00 0.00 0.00 3.46
2823 2868 8.738645 ATTTCATAACATGTACTCCCTTCTTC 57.261 34.615 0.00 0.00 0.00 2.87
2858 2903 7.414098 GCATCTACGACACCAAATTAGTTTCAT 60.414 37.037 0.00 0.00 0.00 2.57
2938 2986 0.033504 TTGAAGCTCCGTGGACAGAC 59.966 55.000 0.00 0.00 0.00 3.51
2947 2995 1.216122 GCTGCTAGATTGAAGCTCCG 58.784 55.000 0.00 0.00 40.73 4.63
2963 3011 1.202222 GGCGAGTGAATGGAATTGCTG 60.202 52.381 0.00 0.00 36.07 4.41
2966 3014 1.811965 TGTGGCGAGTGAATGGAATTG 59.188 47.619 0.00 0.00 36.07 2.32
2981 3029 6.751888 GGAAGTATACATTTTGTTCATGTGGC 59.248 38.462 5.50 0.00 35.57 5.01
2997 3045 4.942761 TCATGTAACGGGGGAAGTATAC 57.057 45.455 0.00 0.00 0.00 1.47


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.