>input_sequence_62961
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-----------------------------------------ATGGAGTCGCAGCTGCAGGGCAATGGAGAGCAGGCCACG
GACGCGCGCTACCACGACGCCGCGTCGGCGGC------GCCGGCCAGCAATGCGCCGCTGGCCATAGCGGTGGTCCCGGC
GGCCGCGCACGGGCCCATCGTGCCGAAGCCGGAGCAGGCGCCGGGGGAGTTCCTGGGCGGGCTCGCCGTGGCGCTCCCGC
CGCGGAACCGCGACCGGCACACCAAGGTCGAGGGCCGCGGGCGGCGCATCCGCATGGCGGCGCCCTGCGCGGCGAGGGTC
GCACAGCTCACGCGCGAGCTCGGCCACAAGACCGACGGCGACACCATCCGCTGGCTCCTGCAGCAGTCGGAGCCGGCCAT
CGTCGCCGCCACGGGCACGGGGACGGTGCCCGCGATCGCCACCACCGTCGACGGCGTGCTCCGCATCCCCACCGAGTCGC
CCTCCGCCGCGGGGGCCGACGGCGCGGGGCCGGCATCCAAGCGGCGCAAGCTCCAGCCGACGCGCGCGGCGGGCGGCGCG
GGGCCGCTCGTCGCGGCGCCCCCTGCGGCCTACTACCCCGTCGCGGCCGACCCCCTCCTGCAAGGCAACGGCGGCGGCGG
CGCGATTTCGGTGTCCAGCGGCCTCGCCCCCGTCTCGGCCGCGGCAGCGCCCGCGGGAGGCCACATCCCGTTCTTCGCCC
TACAGGTGCCGGCATCCGGGGACGGGAAGCAGATGGTTCCCCAGGCAGCCATGTGGATGGTTCAGCAGCCGCCCGCCGCC
GGAGGCGCGCCCAACCACCCGACGCACTACTGGGCGTTCCAATCCAACCCTGCAGAATTCAACAACTTCCCCGGCGCACA
GGCCATCAACGTCGCCAACTACCAGCAGCAGCCGTGCTACAGCCCGATGCAGTTCGTCGCCGCGGGCGGGGAGCCACAGG
ACCAGCAAGAAGCCGGTGACCAGTGCGCGGACGCCGACGACCAGATCCAGGGCCTGGAGGACGACTACGACGGCGAGGCG
TTGACTGACTCCAGCTCCGAAGAGTAG-----------------------------------------------------
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>chr5B_1_TraesCS5B01G310000
AACTAACAAAATGTTAATGCATGTCAAGAAAAATTATCTCATTGAATTCGTATTTGAACATAGTTTCCAAAAATATAATA
TTTGGTGACATGCGTGAACATTTTGTTAGTTTAATCTATGGTCAAAATTTGGCACGAAATACAATGGGGACCAATAAACC
CGGACGGAGATAGTATCTCTTAATAACAAAAATGTCATCTTTTAATATAAAATTCCATCTTTTAATAAACAAAAATGCCA
TGTCTTAATATGAAAATGTCATCTCTTATAAGGAATAAATGCCATCTCTTAATATAAATATAACATCTCTTAATAATTTA
AAATGCTATCTCTTAATAAAAATGGCATATCTTTACAATAAAAAAATTCATCCTCAATAAAAAAAGATCATGTACAATAA
CAAAACTTTGCTTGTCGAACAAAACAAAAATAGACAAACTTTTTGAAAAAAGAAATGCCATGTGACATAGTTTGAAAATT
TATAAACTGTCATGTTAATTTTTTCTAGAAAAAATGTCATTTGATTAAAAAAAGAAGTAAAAGGGAGACTGGGATTCTAA
CCAAGATCTCTTAGGTATATAGGGTCGCGTCACTAGCAAATGCGGTGGCTGAAAATGTTATGCATGGTATTGCGTTCGCT
GGATTTTATCGTACAGCGAAGTAGTTTCAAAATCCGACGTGGCTCCGATCCGCACCAGGATTCGTGCAGAGGAAATCCAA
TGGGAGAGTGCGCGTTCGCTGGGATTGCCCCCGAGCGAACGTTCACCAGTTACTATTTCGCGTCTTTATTTGATGGGCCG
AATTGTCCAGTCCCCACCAGCAGGGCCCATTGCCCGGTGGAGCGAGCGGTGGCCCCTAAAACCCTATCCACGGACCCACC
GCCCAGCGATAACCAACCCCTCCTGCCAAAGAACTCGCCGAGACGCCG-CCCGCCGCCGCCGCCAAGCCGTAACCGAAGA
GGGAGCCCAAGCGAAGCAAAACTCCCCAAATCCGATCTCCCATGGAGTCGCAGCTGCAGGGCAATGGAGAGCAGGCCACG
GACGCGCGCTACCACGACGCCGCGTCGGCGGC------GCCGGCCAGCAATGCGCCGCTGGCCATAGCGGTGGTCCCGGC
GGCCGCGCACGGGCCCATCGTGCCGAAGCCGGAGCAGGCGCCGGGGGAGTTCCTGGGCGGGCTCGCCGTGGCGCTCCCGC
CGCGGAACCGCGACCGGCACACCAAGGTCGAGGGCCGCGGGCGGCGCATCCGCATGGCGGCGCCCTGCGCGGCGAGGGTC
GCACAGCTCACGCGCGAGCTCGGCCACAAGACCGACGGCGACACCATCCGCTGGCTCCTGCAGCAGTCGGAGCCGGCCAT
CGTCGCCGCCACGGGCACGGGGACGGTGCCCGCGATCGCCACCACCGTCGACGGCGTGCTCCGCATCCCCACCGAGTCGC
CCTCCGCCGCGGGGGCCGACGGCGCGGGGCCGGCATCCAAGCGGCGCAAGCTCCAGCCGACGCGCGCGGCGGGCGGCGCG
GGGCCGCTCGTCGCGGCGCCCCCTGCGGCCTACTACCCCGTCGCGGCCGACCCCCTCCTGCAAGGCAACGGCGGCGGCGG
CGCGATTTCGGTGTCCAGCGGCCTCGCCCCCGTCTCGGCCGCGGCAGCGCCCGCGGGAGGCCACATCCCGTTCTTCGCCC
TACAGGTGCCGGCATCCGGGGACGGGAAGCAGATGGTTCCCCAGGCAGCCATGTGGATGGTTCAGCAGCCGCCCGCCGCC
GGAGGCGCGCCCAACCACCCGACGCACTACTGGGCGTTCCAATCCAACCCTGCAGAATTCAACAACTTCCCCGGCGCACA
GGCCATCAACGTCGCCAACTACCAGCAGCAGCCGTGCTACAGCCCGATGCAGTTCGTCGCCGCGGGCGGGGAGCCACAGG
ACCAGCAAGAAGCCGGTGACCAGTGCGCGGACGCCGACGACCAGATCCAGGGCCTGGAGGACGACTACGACGGCGAGGCG
TTGACTGACTCCAGCTCCGAAGAGTAGCATGGCACGGCAGCGCCAAGCTCCATAGTCCATAGAAC--AAACTCGAATCCA
AGACTAGGTTAGAACTTTTGCCTGATCTGATTTTCTTCTTTCTGTCTTTC----TTGTGCCATGTCTCGTATACGATGTT
GGTGATTTT-GGTTGGATTGGAATTTGGAAACTGGTGTAGAGAAGTT--TGGTGTCGACAATTGAGTAGAAAAGCTTGAC
ATGCACAAAAG--TTATCACGAGTTTATCTGCTTTTTCTGCGTAGTAC-TAGTAGTAGCAGCACTGTCCTGTGCACTCG-
-GTGTTTTGTGTTTGTTATTGTAGTCAATCTTTTGACTGCCCTAGTAGTTGACTACTCCCTCCGTAAAAAAATCACTAAA
ATTGTTATCTAAACACTTTTTATATTTCTTTACAAAGGGAGTACTATTGGTAC-----------------------TACT
TTGGATTAGAGCATCTGCAAGAACACAAATGCATTTCCGTTTGAAAATATTAGAAGGTGTTGGTTTATCATAAGTCAAAC
TTCTTTAAGTTTGACCAACTTCATAGAATTTTTTTAATATTTGCAACATCAAATATATAAAATATATAAAATATATAATG
AAACTAATTTGGTGTACTAATTTATGTATAAAAAATATGCTCCCTTCAAATATATAAAGTATAAAAGTATATTTGAAAAT
AATTGACTCAACTTTGTACTAACTTTAGTCTAAAATTAATACTCCCTTTGTAAACTAATATAAGAGTGTTGAGATCACTA
TTTTAGTAAACTAAACATTTTTATATTAGTTTACGGATGGAGTACAAAGTAGAGTCACTTATTTTAGGAAGAAGGGAGTA
CATGTTATGAAATATATATATAATGAAACTAATTTGGTGTCGTAGATGCTGTAGCAAAGAAAACTATATCATGTTGGTAA
AATA---GGACTTTGGGCTATGACTGTCTGTCCACGGAGCTTCAATCTAGCAGCAATTCCATTCACTCGCCACATGAACA
AAATGTATACTTCCCCCGTTACATGAT
>chr5A_783
TCTTTATT------------------------------------------------------------------------
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--------------------------------------------------------------------TTTGATGGGCCG
AATTGTGCAGTCCCCACCAGCAGGGCCCATTGCCCGGCGGAGCGAGCGGTGGCCCCTAAAACCCTATCCGCGGACCCACC
GCCCAGCGATAACCAACCTCTCCTGCCAAAGAACACGCCGAGACGCCG-CCCGCCGCCGCCGCCAAGCCGTAACAGAAGA
GGGAGCCCAAGCGAAGCAAAACCCCCCAAATCCGATCTTCCATGGAGTCGCAGCTGCAGGGCAATGGCGAGCAGGCCACG
GACGCGCGCTACCACGACGCCCCGTCGGCGGCGCCGGTGCCGGCCAGCAATGCGCCGCTGGCCATAGCGGTGGTCCCGGC
GGCCGCGCACGGGCCCATCGTGCCGAAGCCGGAGCAGGCGCCGGGGGAGTTCCTGGGCGGCCTCGCCGTCGCGCTCCCGC
CGCGGAACCGCGACCGGCACACCAAGGTGGAGGGCCGCGGGCGGCGCATCCGCATGGCGGCGCCCTGCGCGGCCAGGGTC
GCGCAGCTCACGCGCGAGCTCGGCCACAAGACGGACGGCGACACCATCCGCTGGCTCCTGCAGCAGTCGGAGCCTGCCAT
CGTCGCCGCCACGGGCACGGGGACGGTGCCCGCGATCGCCACCACCGTCGACGGCGTGCTCCGCATCCCCACCGAGTCGG
CCTCCGCCGCGGGGGCCGACGGCGCGGGGCCGGCGTCCAAGCGGCGCAAGCTCCAGCCGACGCGCGCGGCGGGCGGCGCG
GGGCCGCTCGTCGGGGCGCCCCCCGCGGCCTACTACCCGGTGGCCGCCGACCCCCTCCTGCAAGGCAACGGCG-------
--CGATTTCGGTGTCCAGCGGCCTCGCCCCCGTCTCGGCCGCGGCGGCGCCCGCGGGAGGCGGCATCCCGTTCTTCACCA
TACGGGTGCCGGCATCCGGCGACGGCAAGCAGATGGTTTCCCCTGCAGGCATGTGGATGCTTCAGCAGCCGCCCGCCGCC
GGAGGCGCGCCCAACCAGCCGATGCAATACTGGCCGTTCCCGCCCAACCCTGCAGAGTTCAACAACTTCCCCGGCGCACA
GGCCATCAACGTCGCCAACTACCAGCAGCAGCCGTGCTACAGCCCGATGCAGTTCGTCGCCGCCGGCGGGGAGCCACAGG
ACCAGCAACAAGCCGACGGCCGGAGCGAGGGCGCCGACGGCCAGACCCAGGGCCTGGAGGACGACTACGACGGCGAGGCC
CTGACGGACTCCAGCTCCGAAGAGTAGCACGGCACGGCAGCGTTATGCCTCCATAGTGATAGAAC--AAACTCGAATCCA
AGACTAGGTTAGAACTTTTGCCTGATCTGATTTTCTTCTTTCTTTCTTTCGTTCTTGTGCAATGTCTCATATATGATGTT
GGGGATTTTGGGTTGGATTGAAATTTGGAAACTGGTGTAGAGAAGTATTTAGTGTCGACAATTGAGTAGAAAAGGTTGAC
ATGCCCAAAAGTATTACTACGATTTTATCTGCTTTCTCTGGTTGTGTGGTAGTAGTAGCAAA--TGTCCTGTGCACTCCG
TGTGTTTTTTGTTTGTTATTGTGGTCAATCTTTTGACTTTCCTACGTGTT------------------------------
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>chr5D_785
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----------------------------------------------------------------TTTATTTGATGGGCCG
AATTGTCCAGTCCCCACCAGCAGGGCCCATTGCCCGGTGGAGGGAGCGGTGGCCCCTAAAACCCTATCCGCGGACCCACC
GCCCAGCGCTAACCAACCTCTCCTGCCAAAGAACTCGCCGAGACGCCGCCCCGCCGCCGCCGCCAAGCCGTAACCGAAGA
GGGAGCCCAAGCGAAGCAAAACTCCCCAAATCCGATCTCCCATGGAGTCGCAGCTGCAGGGCAACGGCGAGCAGGCCACG
GACGCGCGCTACCACGACGCCGCGTCGGCGGCGC------CGGCCAGCAATGCGCCGCTGGCCATAGCGGTGGTCCCGGC
CGCCGCGCACGGGCCCATCGTGCCGAAGCCGGAGCAGGCGCCGGGCGAGTTCCTGGGCGGCCTCGCTGTGGCGCTCCCGC
CGCGGAACCGCGACCGGCACACCAAGGTGGAGGGCCGCGGGCGGCGCATCCGCATGGCGGCGCCCTGCGCGGCCAGGGTC
GCGCAGCTCACGCGCGAGCTCGGCCACAAGACGGACGGCGACACCATCCGCTGGCTCCTGCAGCAGTCGGAGCCGGCCAT
CGTCGCCGCCACGGGCACGGGGACGGTGCCCGCGATCGCCACCACCGTCGACGGCGTGCTCCGCATCCCCACCGAGTCGG
CCTCTGCCGCGGGGGCCGACGGCGCGGGGCCGGCGTCCAAGCGGCGCAAGCTCCAGCCGACGCGCGCGGCGGGCGGCGCG
GGTCCGCTCGTCGCGGCGCCCCCC---------------GTGGCCGCCGACCCCCTCCTGCAAGGCAACGGCGGCGGCGG
CGCGATTTCGGTGTCCAGCGGCCTCGCCCCCGTCTCGGCCGCGGCGGCGCCCGCGGGAGGCCACATCCCGTTCTTCGCCC
TACAGGTGCCGGCGTCCGGGGACGGCAAGCAGATGGTTCCCCAGGCAGCCATGTGGATGGTTCAGCAGCCGCCCGCCGCC
GGGGGCACGCCCAACCACCCGACGCACTACTGGGCGTTCCAGTCCAACCCTGCAGAATTCAACAACTTCCCCGGCGCACA
GGCCATCAACGTCGGCAACTACCAGCAGCAGCCGTGCTACAGCCCGATGCAGTTCGTCGCCGCCGGCGGGGAGCCACAGG
ACCAGCAGCAACCCGGTGACCAGAGCGAGGGCGCCGACGACCAGACCCAGGGCCTGGAGGACGACTACGACGGCGAGGCC
CTGACGGACTCCAGCTCCGAAGAGTAGCACGGCGCGGCAGCGCCACGT-TCCATAGTCATAGGTTAGAAACTCGAATCCA
AGACTAGGTTAGAACTTTTGCCTGATGTGATTTTCTTCTTTCTTTCTTTCGTTCTTGTGCAATGTCTCATATACGATGTT
GGTGATTTC-GGGTTTGA------TTGGAAACTGGTGTAGAGAAGTATCTGGTGTCGACAATTGAGTAGAAAAGGATGGC
ATGCCCAAAAG--TTATTACGAGCTGCTCTGCTTTCTCTGCTTGTGTGGTAGTAGTAGCA---CTCTCCTGTGCACTCGG
TGTGTTTTTTGTTTGTTATTGTAGTCGATCTTTTGACTTCCCTTCGTGTTTGACTGCTAGTTGCTAGTCGTTCTCAAAAA
TAAGTGACTCAATTTTATACTAATTTTATACTAAAACTAGTTTAAAGTTGAGTCATTTATTTTGAGACGGAGTGAGTACT
TTGGATTAGAACATCTACAAGAACACAAATGCATTTCGGTTTGAAAATATCAGAAGGTCTAGATTTGCCACAAGTCAAAC
TTCTTTAAGTTTGACCAACTTCATAGAAAAAACTGTT--------------AATATATACAGTATAAAAAATATATGTTT
ATGAA---------------------------------------------------------------------------
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---------------ATATATAGTGAAACTAATTTGGTGTCGTAGATGTTGTAGCAAAGAAAACTATATCATGTTGGTAA
AATACTAGGACTTTGGGCTATGACTATCTGTCCATGGAGCTTCAATCTAGTAGAAATTCCATTCACTC-CCACATGAACA
AAATTTATACTTCCTCCGTTACATAAT
>SNPs
SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
---------------------------------------------------------------------S----------
------------------S-------------------------------------------------------------
-------------------------------------------------------------------S------------
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------------------------------------------------------------S-------------------
----------------------------S--------------------------------------------S------
--S-----------------------------S-----------------------------------------------
-------------------------------------------------------------------------------S
----------------------------------S---------------------------------------------
-----------------------S--------------S--S--S-----------------------------------
---------------------------------------------S----------------------------------
-------------------------S------------------------------------------------------
-----------------------------------------S--------------------------------------
---------------------------------------------------------------S----------------
--------S--------------S---S--S--------------S---------------------------------S
S----S-----------------------S---------------S--SS-SSSSSS-----------------------
-------------------------------------------S----------------S-------S-----------
--------------------S-------------------------S---------------------------S-----
----S------------S-----------------S-----S-SSSSS------------SSS-----------------
--------S-----------------------------S-----SSS---SSSSSSSSSS-SSS--SSSSSSSSSSS---
SSS--S-SSS--SSSSS-SS--SS---S-SSSS---SSSSS-SSS-S-S-SSS---------------------------
----------S-----S--------------------S------------S-------S-S-S---SS--S---------
----------------------------SSSSS-SSSSSSSSSSSSSSSSS--------S-S----S---------SS-S
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS-------S-------------------------S-------------------------------
-------------------------S--------S---------------S--S--------------S-----------
----S---------S---------S--
>forward_642
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--------------------------------------------------------------CATGGTATTGCGTTCGCT
GG------------------------------------------------------------------------------
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>reverse_2006
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-----TGACTCCAGCTCCGAAGAGT-------------------------------------------------------
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>forward_643
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---------------------------------------------------------------ATGGTATTGCGTTCGCT
GGA-----------------------------------------------------------------------------
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>reverse_2302
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-------------------------------------------------------------CACTGTCCTGTGCACTCGG
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