Multiple sequence alignment - TraesCS5B01G300100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G300100 chr5B 100.000 4177 0 0 1 4177 484732376 484736552 0.000000e+00 7714.0
1 TraesCS5B01G300100 chr5B 97.436 78 2 0 3670 3747 484735970 484736047 2.620000e-27 134.0
2 TraesCS5B01G300100 chr5B 97.436 78 2 0 3595 3672 484736045 484736122 2.620000e-27 134.0
3 TraesCS5B01G300100 chr5D 91.508 1943 121 17 1660 3580 403939431 403937511 0.000000e+00 2634.0
4 TraesCS5B01G300100 chr5D 87.196 617 32 8 2 572 403941194 403940579 0.000000e+00 658.0
5 TraesCS5B01G300100 chr5D 90.020 511 36 7 556 1051 403940560 403940050 0.000000e+00 647.0
6 TraesCS5B01G300100 chr5D 88.534 532 32 13 3670 4177 403937463 403936937 5.930000e-173 617.0
7 TraesCS5B01G300100 chr5A 91.366 1749 110 16 1659 3384 510280297 510278567 0.000000e+00 2355.0
8 TraesCS5B01G300100 chr5A 85.545 761 73 20 647 1379 510281159 510280408 0.000000e+00 761.0
9 TraesCS5B01G300100 chr5A 84.530 362 47 1 5 357 510281804 510281443 2.390000e-92 350.0
10 TraesCS5B01G300100 chr5A 84.804 204 19 9 3865 4058 510278436 510278235 1.180000e-45 195.0
11 TraesCS5B01G300100 chr5A 86.792 106 12 2 3760 3864 510278569 510278465 2.640000e-22 117.0
12 TraesCS5B01G300100 chr7A 87.654 81 10 0 3683 3763 55141486 55141406 1.240000e-15 95.3
13 TraesCS5B01G300100 chr6B 89.333 75 5 3 3865 3938 625367935 625367863 1.600000e-14 91.6
14 TraesCS5B01G300100 chr6A 89.333 75 5 3 3865 3938 559852292 559852220 1.600000e-14 91.6
15 TraesCS5B01G300100 chr6D 88.000 75 7 2 3865 3938 414781072 414780999 2.070000e-13 87.9
16 TraesCS5B01G300100 chr7D 82.979 94 14 1 3670 3763 53188966 53189057 2.680000e-12 84.2
17 TraesCS5B01G300100 chr3B 85.333 75 6 4 3865 3938 159569171 159569241 5.790000e-09 73.1
18 TraesCS5B01G300100 chr2B 83.333 78 6 5 3874 3948 568277707 568277780 9.690000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G300100 chr5B 484732376 484736552 4176 False 2660.666667 7714 98.290667 1 4177 3 chr5B.!!$F1 4176
1 TraesCS5B01G300100 chr5D 403936937 403941194 4257 True 1139.000000 2634 89.314500 2 4177 4 chr5D.!!$R1 4175
2 TraesCS5B01G300100 chr5A 510278235 510281804 3569 True 755.600000 2355 86.607400 5 4058 5 chr5A.!!$R1 4053

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
549 612 0.527113 TTTGCCACCGAATCATGCAG 59.473 50.0 0.0 0.0 32.88 4.41 F
1100 1219 0.178975 CCCTCTCTCCGATGCTACCT 60.179 60.0 0.0 0.0 0.00 3.08 F
1562 1861 0.324943 TTTCGCTCAAGGAAGGGGAG 59.675 55.0 0.0 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2372 2673 0.107459 GGCCTGCTACCTCCTTTCAG 60.107 60.0 0.00 0.00 0.00 3.02 R
3046 3367 0.403271 AAGGTTCTCCTGCAGCATGT 59.597 50.0 8.66 0.00 44.35 3.21 R
3413 3736 0.233848 GCAAACAACGGTGTACTCGG 59.766 55.0 6.49 7.39 36.80 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 4.201391 GCACGCTCATACAAAATTTCAACG 60.201 41.667 0.00 0.00 0.00 4.10
67 68 4.320690 CACGCTCATACAAAATTTCAACGG 59.679 41.667 0.00 0.00 0.00 4.44
78 79 6.816140 ACAAAATTTCAACGGTGACAAGATTT 59.184 30.769 0.44 5.11 31.90 2.17
160 174 5.570973 CAGTAGCGATGAAGGAGATAATTCG 59.429 44.000 0.00 0.00 0.00 3.34
236 250 1.117994 CTCCTGTAGCTGAGGCATCA 58.882 55.000 0.00 0.00 41.70 3.07
255 269 1.966901 ATGCCGCCGTAGTCCATCAA 61.967 55.000 0.00 0.00 0.00 2.57
349 363 2.179427 TGCTCCATAGTGCACTAGTGT 58.821 47.619 29.05 12.33 37.57 3.55
360 374 2.154462 GCACTAGTGTCAAATGCCACT 58.846 47.619 23.44 2.45 43.90 4.00
364 378 1.512926 AGTGTCAAATGCCACTCGAC 58.487 50.000 0.00 0.00 37.34 4.20
376 390 7.421530 AATGCCACTCGACATACATAAATAC 57.578 36.000 0.00 0.00 0.00 1.89
383 397 6.068473 TCGACATACATAAATACAGTCGCT 57.932 37.500 0.00 0.00 44.76 4.93
395 409 2.795121 CAGTCGCTCTGCACAATTAC 57.205 50.000 0.00 0.00 37.36 1.89
435 475 7.979444 TCAATTTTGAACCTACTGGAACTAG 57.021 36.000 0.00 0.00 33.55 2.57
461 504 3.059393 CGGCATGTGTGAGCTATATGTTG 60.059 47.826 0.00 0.00 0.00 3.33
549 612 0.527113 TTTGCCACCGAATCATGCAG 59.473 50.000 0.00 0.00 32.88 4.41
560 623 4.083961 CCGAATCATGCAGCTCTTATCTTG 60.084 45.833 0.00 0.00 0.00 3.02
562 625 4.701651 ATCATGCAGCTCTTATCTTGGA 57.298 40.909 0.00 0.00 0.00 3.53
569 632 4.570369 GCAGCTCTTATCTTGGAGAAGAAC 59.430 45.833 6.18 2.65 39.01 3.01
617 715 1.590238 CGACTTCGCAGCATTTCCTAG 59.410 52.381 0.00 0.00 0.00 3.02
660 758 3.134458 CAAAACAGAGGAACGAGAAGCT 58.866 45.455 0.00 0.00 0.00 3.74
685 783 3.122971 GGGCACCGACCGTTAAGC 61.123 66.667 0.00 0.00 40.86 3.09
767 865 1.655654 CGCAGCATCTCCTCGTACG 60.656 63.158 9.53 9.53 0.00 3.67
828 940 3.304257 CCGTTGCGAGATAGAATCTGAG 58.696 50.000 0.00 0.00 40.38 3.35
829 941 3.003793 CCGTTGCGAGATAGAATCTGAGA 59.996 47.826 0.00 0.00 40.38 3.27
831 943 4.260990 CGTTGCGAGATAGAATCTGAGAGT 60.261 45.833 0.00 0.00 40.38 3.24
848 960 4.218635 TGAGAGTAGTGCTAGTGAAACAGG 59.781 45.833 0.00 0.00 41.43 4.00
850 962 2.632996 AGTAGTGCTAGTGAAACAGGCA 59.367 45.455 0.00 0.00 42.37 4.75
869 981 2.963371 GGAGCGTTCTGTCCGACT 59.037 61.111 0.00 0.00 0.00 4.18
875 987 1.350193 CGTTCTGTCCGACTGATTGG 58.650 55.000 8.74 0.00 0.00 3.16
880 992 5.175859 GTTCTGTCCGACTGATTGGAAATA 58.824 41.667 8.74 0.00 40.38 1.40
949 1068 1.306226 AGTACTCCACTCCTGGGGC 60.306 63.158 0.00 0.00 42.84 5.80
1034 1153 2.677289 CCATGGGAGGCTCTGCTGT 61.677 63.158 15.23 0.00 0.00 4.40
1071 1190 0.824759 ATCTCAAGGTACACCCGCTC 59.175 55.000 0.00 0.00 38.74 5.03
1100 1219 0.178975 CCCTCTCTCCGATGCTACCT 60.179 60.000 0.00 0.00 0.00 3.08
1119 1238 3.019564 CCTTCTTGAGGGGTGCTTTATG 58.980 50.000 0.00 0.00 42.26 1.90
1124 1243 3.857157 TGAGGGGTGCTTTATGTATCC 57.143 47.619 0.00 0.00 0.00 2.59
1127 1246 4.137543 GAGGGGTGCTTTATGTATCCTTG 58.862 47.826 0.00 0.00 31.71 3.61
1157 1279 6.405397 GGGTTTAAGGCGTGATGTGAATTATT 60.405 38.462 0.00 0.00 0.00 1.40
1158 1280 7.201750 GGGTTTAAGGCGTGATGTGAATTATTA 60.202 37.037 0.00 0.00 0.00 0.98
1161 1283 6.942532 AAGGCGTGATGTGAATTATTATGT 57.057 33.333 0.00 0.00 0.00 2.29
1162 1284 6.942532 AGGCGTGATGTGAATTATTATGTT 57.057 33.333 0.00 0.00 0.00 2.71
1164 1286 5.914635 GGCGTGATGTGAATTATTATGTTGG 59.085 40.000 0.00 0.00 0.00 3.77
1165 1287 5.914635 GCGTGATGTGAATTATTATGTTGGG 59.085 40.000 0.00 0.00 0.00 4.12
1166 1288 6.437928 CGTGATGTGAATTATTATGTTGGGG 58.562 40.000 0.00 0.00 0.00 4.96
1167 1289 6.262049 CGTGATGTGAATTATTATGTTGGGGA 59.738 38.462 0.00 0.00 0.00 4.81
1168 1290 7.201776 CGTGATGTGAATTATTATGTTGGGGAA 60.202 37.037 0.00 0.00 0.00 3.97
1175 1457 8.116669 TGAATTATTATGTTGGGGAAGTTGGTA 58.883 33.333 0.00 0.00 0.00 3.25
1182 1464 5.516984 TGTTGGGGAAGTTGGTACTTTTTA 58.483 37.500 0.00 0.00 44.51 1.52
1183 1465 5.360429 TGTTGGGGAAGTTGGTACTTTTTAC 59.640 40.000 0.00 0.00 44.51 2.01
1191 1474 3.889196 TGGTACTTTTTACTTGCGCAG 57.111 42.857 11.31 7.81 0.00 5.18
1194 1477 4.216731 GGTACTTTTTACTTGCGCAGTTC 58.783 43.478 11.31 0.00 36.88 3.01
1195 1478 4.260866 GGTACTTTTTACTTGCGCAGTTCA 60.261 41.667 11.31 0.00 36.88 3.18
1215 1498 5.988310 TCATTGCAATTGAAGAGAATGGT 57.012 34.783 9.83 0.00 0.00 3.55
1223 1506 6.255020 GCAATTGAAGAGAATGGTTAGCATTG 59.745 38.462 14.62 0.00 0.00 2.82
1226 1509 3.303351 AGAGAATGGTTAGCATTGGGG 57.697 47.619 14.62 0.00 0.00 4.96
1231 1514 4.167892 AGAATGGTTAGCATTGGGGTGATA 59.832 41.667 14.62 0.00 0.00 2.15
1237 1520 7.072562 TGGTTAGCATTGGGGTGATATATTTT 58.927 34.615 0.00 0.00 0.00 1.82
1240 1523 5.969086 AGCATTGGGGTGATATATTTTCCT 58.031 37.500 0.00 0.00 0.00 3.36
1241 1524 5.776716 AGCATTGGGGTGATATATTTTCCTG 59.223 40.000 0.00 0.00 0.00 3.86
1244 1527 5.319043 TGGGGTGATATATTTTCCTGTCC 57.681 43.478 0.00 0.00 0.00 4.02
1245 1528 4.202419 TGGGGTGATATATTTTCCTGTCCG 60.202 45.833 0.00 0.00 0.00 4.79
1249 1532 6.295916 GGGTGATATATTTTCCTGTCCGAGAT 60.296 42.308 0.00 0.00 0.00 2.75
1251 1534 7.976734 GGTGATATATTTTCCTGTCCGAGATAG 59.023 40.741 0.00 0.00 0.00 2.08
1255 1538 2.526888 TTCCTGTCCGAGATAGTGGT 57.473 50.000 0.00 0.00 0.00 4.16
1289 1573 6.918067 AAAGCCAGCTCTTAAATTTTACCT 57.082 33.333 0.00 0.00 0.00 3.08
1291 1575 5.570320 AGCCAGCTCTTAAATTTTACCTCA 58.430 37.500 0.00 0.00 0.00 3.86
1325 1612 7.723616 TGAAGAATTTTGGGTTCAGTGATTAGA 59.276 33.333 0.00 0.00 0.00 2.10
1327 1614 8.115490 AGAATTTTGGGTTCAGTGATTAGAAG 57.885 34.615 0.00 0.00 0.00 2.85
1330 1617 7.979444 TTTTGGGTTCAGTGATTAGAAGTAG 57.021 36.000 0.00 0.00 0.00 2.57
1331 1618 6.928348 TTGGGTTCAGTGATTAGAAGTAGA 57.072 37.500 0.00 0.00 0.00 2.59
1335 1622 7.036829 GGGTTCAGTGATTAGAAGTAGAACTC 58.963 42.308 0.00 0.00 35.65 3.01
1340 1627 7.337184 TCAGTGATTAGAAGTAGAACTCACGAT 59.663 37.037 0.00 0.00 37.27 3.73
1341 1628 7.430793 CAGTGATTAGAAGTAGAACTCACGATG 59.569 40.741 0.00 0.00 37.27 3.84
1361 1648 5.638783 GATGGAATTTGCACAAGAGAGAAG 58.361 41.667 0.00 0.00 0.00 2.85
1379 1666 9.487442 AGAGAGAAGATATTCAGAGGTTTTAGT 57.513 33.333 2.42 0.00 0.00 2.24
1380 1667 9.744468 GAGAGAAGATATTCAGAGGTTTTAGTC 57.256 37.037 2.42 0.00 0.00 2.59
1390 1677 7.696992 TCAGAGGTTTTAGTCTTTGTTTTGT 57.303 32.000 0.00 0.00 0.00 2.83
1391 1678 8.117813 TCAGAGGTTTTAGTCTTTGTTTTGTT 57.882 30.769 0.00 0.00 0.00 2.83
1392 1679 8.241367 TCAGAGGTTTTAGTCTTTGTTTTGTTC 58.759 33.333 0.00 0.00 0.00 3.18
1393 1680 7.488150 CAGAGGTTTTAGTCTTTGTTTTGTTCC 59.512 37.037 0.00 0.00 0.00 3.62
1394 1681 7.396339 AGAGGTTTTAGTCTTTGTTTTGTTCCT 59.604 33.333 0.00 0.00 0.00 3.36
1395 1682 7.903145 AGGTTTTAGTCTTTGTTTTGTTCCTT 58.097 30.769 0.00 0.00 0.00 3.36
1396 1683 8.372459 AGGTTTTAGTCTTTGTTTTGTTCCTTT 58.628 29.630 0.00 0.00 0.00 3.11
1397 1684 8.653338 GGTTTTAGTCTTTGTTTTGTTCCTTTC 58.347 33.333 0.00 0.00 0.00 2.62
1398 1685 9.419297 GTTTTAGTCTTTGTTTTGTTCCTTTCT 57.581 29.630 0.00 0.00 0.00 2.52
1399 1686 9.634163 TTTTAGTCTTTGTTTTGTTCCTTTCTC 57.366 29.630 0.00 0.00 0.00 2.87
1400 1687 6.834168 AGTCTTTGTTTTGTTCCTTTCTCA 57.166 33.333 0.00 0.00 0.00 3.27
1401 1688 6.856895 AGTCTTTGTTTTGTTCCTTTCTCAG 58.143 36.000 0.00 0.00 0.00 3.35
1402 1689 5.516696 GTCTTTGTTTTGTTCCTTTCTCAGC 59.483 40.000 0.00 0.00 0.00 4.26
1403 1690 4.385358 TTGTTTTGTTCCTTTCTCAGCC 57.615 40.909 0.00 0.00 0.00 4.85
1404 1691 3.631250 TGTTTTGTTCCTTTCTCAGCCT 58.369 40.909 0.00 0.00 0.00 4.58
1405 1692 4.023291 TGTTTTGTTCCTTTCTCAGCCTT 58.977 39.130 0.00 0.00 0.00 4.35
1406 1693 4.142182 TGTTTTGTTCCTTTCTCAGCCTTG 60.142 41.667 0.00 0.00 0.00 3.61
1407 1694 2.276732 TGTTCCTTTCTCAGCCTTGG 57.723 50.000 0.00 0.00 0.00 3.61
1417 1704 2.092753 TCTCAGCCTTGGCATTAAGAGG 60.093 50.000 14.54 0.00 0.00 3.69
1418 1705 1.064463 TCAGCCTTGGCATTAAGAGGG 60.064 52.381 14.54 0.00 0.00 4.30
1425 1712 4.770010 CCTTGGCATTAAGAGGGTTAAACA 59.230 41.667 0.00 0.00 0.00 2.83
1426 1713 5.245075 CCTTGGCATTAAGAGGGTTAAACAA 59.755 40.000 0.00 0.00 0.00 2.83
1429 1716 5.158494 GGCATTAAGAGGGTTAAACAAACG 58.842 41.667 0.00 0.00 39.13 3.60
1472 1763 9.019656 TGTTTAATTCAGCACAATGTAAGGTAT 57.980 29.630 0.00 0.00 0.00 2.73
1473 1764 9.289303 GTTTAATTCAGCACAATGTAAGGTATG 57.711 33.333 0.00 0.00 0.00 2.39
1474 1765 8.574251 TTAATTCAGCACAATGTAAGGTATGT 57.426 30.769 0.00 0.00 0.00 2.29
1478 1769 6.941857 TCAGCACAATGTAAGGTATGTAGAA 58.058 36.000 0.00 0.00 0.00 2.10
1480 1771 7.880713 TCAGCACAATGTAAGGTATGTAGAAAA 59.119 33.333 0.00 0.00 0.00 2.29
1481 1772 8.511321 CAGCACAATGTAAGGTATGTAGAAAAA 58.489 33.333 0.00 0.00 0.00 1.94
1482 1773 9.243105 AGCACAATGTAAGGTATGTAGAAAAAT 57.757 29.630 0.00 0.00 0.00 1.82
1483 1774 9.289303 GCACAATGTAAGGTATGTAGAAAAATG 57.711 33.333 0.00 0.00 0.00 2.32
1516 1815 2.161012 CAGACAGGCAAGCACACTAATG 59.839 50.000 0.00 0.00 0.00 1.90
1520 1819 2.756760 CAGGCAAGCACACTAATGGATT 59.243 45.455 0.00 0.00 0.00 3.01
1521 1820 3.947196 CAGGCAAGCACACTAATGGATTA 59.053 43.478 0.00 0.00 0.00 1.75
1522 1821 4.581824 CAGGCAAGCACACTAATGGATTAT 59.418 41.667 0.00 0.00 0.00 1.28
1523 1822 5.764686 CAGGCAAGCACACTAATGGATTATA 59.235 40.000 0.00 0.00 0.00 0.98
1524 1823 6.432162 CAGGCAAGCACACTAATGGATTATAT 59.568 38.462 0.00 0.00 0.00 0.86
1525 1824 7.607607 CAGGCAAGCACACTAATGGATTATATA 59.392 37.037 0.00 0.00 0.00 0.86
1526 1825 7.826252 AGGCAAGCACACTAATGGATTATATAG 59.174 37.037 0.00 0.00 0.00 1.31
1527 1826 7.066284 GGCAAGCACACTAATGGATTATATAGG 59.934 40.741 0.00 0.00 0.00 2.57
1528 1827 7.824289 GCAAGCACACTAATGGATTATATAGGA 59.176 37.037 0.00 0.00 0.00 2.94
1529 1828 9.155975 CAAGCACACTAATGGATTATATAGGAC 57.844 37.037 0.00 0.00 0.00 3.85
1530 1829 8.435931 AGCACACTAATGGATTATATAGGACA 57.564 34.615 0.00 0.00 0.00 4.02
1531 1830 8.314751 AGCACACTAATGGATTATATAGGACAC 58.685 37.037 0.00 0.00 0.00 3.67
1532 1831 8.314751 GCACACTAATGGATTATATAGGACACT 58.685 37.037 0.00 0.00 0.00 3.55
1536 1835 9.726438 ACTAATGGATTATATAGGACACTTTGC 57.274 33.333 0.00 0.00 0.00 3.68
1537 1836 9.725019 CTAATGGATTATATAGGACACTTTGCA 57.275 33.333 0.00 0.00 0.00 4.08
1539 1838 9.592196 AATGGATTATATAGGACACTTTGCATT 57.408 29.630 0.00 0.00 0.00 3.56
1547 1846 9.950680 ATATAGGACACTTTGCATTAAATTTCG 57.049 29.630 0.00 0.00 0.00 3.46
1548 1847 4.923281 AGGACACTTTGCATTAAATTTCGC 59.077 37.500 0.00 0.00 0.00 4.70
1549 1848 4.923281 GGACACTTTGCATTAAATTTCGCT 59.077 37.500 0.00 0.00 0.00 4.93
1550 1849 5.060940 GGACACTTTGCATTAAATTTCGCTC 59.939 40.000 0.00 0.00 0.00 5.03
1551 1850 5.527951 ACACTTTGCATTAAATTTCGCTCA 58.472 33.333 0.00 0.00 0.00 4.26
1552 1851 5.982516 ACACTTTGCATTAAATTTCGCTCAA 59.017 32.000 0.00 0.00 0.00 3.02
1553 1852 6.144402 ACACTTTGCATTAAATTTCGCTCAAG 59.856 34.615 0.00 6.16 0.00 3.02
1554 1853 5.634859 ACTTTGCATTAAATTTCGCTCAAGG 59.365 36.000 0.00 0.00 0.00 3.61
1555 1854 5.384063 TTGCATTAAATTTCGCTCAAGGA 57.616 34.783 0.00 0.00 0.00 3.36
1556 1855 5.384063 TGCATTAAATTTCGCTCAAGGAA 57.616 34.783 0.00 0.00 0.00 3.36
1557 1856 5.401550 TGCATTAAATTTCGCTCAAGGAAG 58.598 37.500 0.00 0.00 0.00 3.46
1558 1857 4.800471 GCATTAAATTTCGCTCAAGGAAGG 59.200 41.667 0.00 0.00 0.00 3.46
1559 1858 5.343249 CATTAAATTTCGCTCAAGGAAGGG 58.657 41.667 0.00 0.00 0.00 3.95
1560 1859 1.839424 AATTTCGCTCAAGGAAGGGG 58.161 50.000 0.00 0.00 0.00 4.79
1561 1860 0.991920 ATTTCGCTCAAGGAAGGGGA 59.008 50.000 0.00 0.00 0.00 4.81
1562 1861 0.324943 TTTCGCTCAAGGAAGGGGAG 59.675 55.000 0.00 0.00 0.00 4.30
1563 1862 0.544357 TTCGCTCAAGGAAGGGGAGA 60.544 55.000 0.00 0.00 0.00 3.71
1564 1863 0.544357 TCGCTCAAGGAAGGGGAGAA 60.544 55.000 0.00 0.00 0.00 2.87
1565 1864 0.324943 CGCTCAAGGAAGGGGAGAAA 59.675 55.000 0.00 0.00 0.00 2.52
1566 1865 1.271379 CGCTCAAGGAAGGGGAGAAAA 60.271 52.381 0.00 0.00 0.00 2.29
1567 1866 2.163509 GCTCAAGGAAGGGGAGAAAAC 58.836 52.381 0.00 0.00 0.00 2.43
1568 1867 2.489073 GCTCAAGGAAGGGGAGAAAACA 60.489 50.000 0.00 0.00 0.00 2.83
1569 1868 3.832527 CTCAAGGAAGGGGAGAAAACAA 58.167 45.455 0.00 0.00 0.00 2.83
1570 1869 4.411013 CTCAAGGAAGGGGAGAAAACAAT 58.589 43.478 0.00 0.00 0.00 2.71
1571 1870 4.407365 TCAAGGAAGGGGAGAAAACAATC 58.593 43.478 0.00 0.00 0.00 2.67
1572 1871 4.106341 TCAAGGAAGGGGAGAAAACAATCT 59.894 41.667 0.00 0.00 0.00 2.40
1573 1872 4.039603 AGGAAGGGGAGAAAACAATCTG 57.960 45.455 0.00 0.00 0.00 2.90
1574 1873 3.092301 GGAAGGGGAGAAAACAATCTGG 58.908 50.000 0.00 0.00 0.00 3.86
1575 1874 3.245264 GGAAGGGGAGAAAACAATCTGGA 60.245 47.826 0.00 0.00 0.00 3.86
1576 1875 4.570719 GGAAGGGGAGAAAACAATCTGGAT 60.571 45.833 0.00 0.00 0.00 3.41
1577 1876 3.973425 AGGGGAGAAAACAATCTGGATG 58.027 45.455 0.00 0.00 0.00 3.51
1578 1877 3.334881 AGGGGAGAAAACAATCTGGATGT 59.665 43.478 0.00 0.00 0.00 3.06
1579 1878 4.540099 AGGGGAGAAAACAATCTGGATGTA 59.460 41.667 0.00 0.00 0.00 2.29
1580 1879 4.884164 GGGGAGAAAACAATCTGGATGTAG 59.116 45.833 0.00 0.00 0.00 2.74
1581 1880 4.884164 GGGAGAAAACAATCTGGATGTAGG 59.116 45.833 0.00 0.00 0.00 3.18
1582 1881 4.336713 GGAGAAAACAATCTGGATGTAGGC 59.663 45.833 0.00 0.00 0.00 3.93
1583 1882 4.922206 AGAAAACAATCTGGATGTAGGCA 58.078 39.130 0.00 0.00 0.00 4.75
1584 1883 5.513233 AGAAAACAATCTGGATGTAGGCAT 58.487 37.500 0.00 0.00 38.18 4.40
1597 1896 6.690194 GATGTAGGCATCCAATCCATTATC 57.310 41.667 0.00 0.00 44.26 1.75
1598 1897 5.848286 TGTAGGCATCCAATCCATTATCT 57.152 39.130 0.00 0.00 0.00 1.98
1599 1898 5.809001 TGTAGGCATCCAATCCATTATCTC 58.191 41.667 0.00 0.00 0.00 2.75
1600 1899 3.947868 AGGCATCCAATCCATTATCTCG 58.052 45.455 0.00 0.00 0.00 4.04
1601 1900 2.421424 GGCATCCAATCCATTATCTCGC 59.579 50.000 0.00 0.00 0.00 5.03
1602 1901 3.341823 GCATCCAATCCATTATCTCGCT 58.658 45.455 0.00 0.00 0.00 4.93
1603 1902 3.126514 GCATCCAATCCATTATCTCGCTG 59.873 47.826 0.00 0.00 0.00 5.18
1604 1903 4.321718 CATCCAATCCATTATCTCGCTGT 58.678 43.478 0.00 0.00 0.00 4.40
1605 1904 4.422073 TCCAATCCATTATCTCGCTGTT 57.578 40.909 0.00 0.00 0.00 3.16
1606 1905 4.380531 TCCAATCCATTATCTCGCTGTTC 58.619 43.478 0.00 0.00 0.00 3.18
1607 1906 4.129380 CCAATCCATTATCTCGCTGTTCA 58.871 43.478 0.00 0.00 0.00 3.18
1608 1907 4.758674 CCAATCCATTATCTCGCTGTTCAT 59.241 41.667 0.00 0.00 0.00 2.57
1609 1908 5.240183 CCAATCCATTATCTCGCTGTTCATT 59.760 40.000 0.00 0.00 0.00 2.57
1610 1909 6.369005 CAATCCATTATCTCGCTGTTCATTC 58.631 40.000 0.00 0.00 0.00 2.67
1611 1910 4.380531 TCCATTATCTCGCTGTTCATTCC 58.619 43.478 0.00 0.00 0.00 3.01
1612 1911 4.101585 TCCATTATCTCGCTGTTCATTCCT 59.898 41.667 0.00 0.00 0.00 3.36
1613 1912 4.818546 CCATTATCTCGCTGTTCATTCCTT 59.181 41.667 0.00 0.00 0.00 3.36
1614 1913 5.991606 CCATTATCTCGCTGTTCATTCCTTA 59.008 40.000 0.00 0.00 0.00 2.69
1615 1914 6.146837 CCATTATCTCGCTGTTCATTCCTTAG 59.853 42.308 0.00 0.00 0.00 2.18
1616 1915 6.465439 TTATCTCGCTGTTCATTCCTTAGA 57.535 37.500 0.00 0.00 0.00 2.10
1617 1916 4.377839 TCTCGCTGTTCATTCCTTAGAG 57.622 45.455 0.00 0.00 0.00 2.43
1618 1917 3.764434 TCTCGCTGTTCATTCCTTAGAGT 59.236 43.478 0.00 0.00 0.00 3.24
1619 1918 4.220821 TCTCGCTGTTCATTCCTTAGAGTT 59.779 41.667 0.00 0.00 0.00 3.01
1620 1919 5.417894 TCTCGCTGTTCATTCCTTAGAGTTA 59.582 40.000 0.00 0.00 0.00 2.24
1621 1920 6.096987 TCTCGCTGTTCATTCCTTAGAGTTAT 59.903 38.462 0.00 0.00 0.00 1.89
1622 1921 6.042777 TCGCTGTTCATTCCTTAGAGTTATG 58.957 40.000 0.00 0.00 0.00 1.90
1623 1922 5.812642 CGCTGTTCATTCCTTAGAGTTATGT 59.187 40.000 0.00 0.00 0.00 2.29
1624 1923 6.313905 CGCTGTTCATTCCTTAGAGTTATGTT 59.686 38.462 0.00 0.00 0.00 2.71
1625 1924 7.464710 CGCTGTTCATTCCTTAGAGTTATGTTC 60.465 40.741 0.00 0.00 0.00 3.18
1626 1925 7.334421 GCTGTTCATTCCTTAGAGTTATGTTCA 59.666 37.037 0.00 0.00 0.00 3.18
1627 1926 9.219603 CTGTTCATTCCTTAGAGTTATGTTCAA 57.780 33.333 0.00 0.00 0.00 2.69
1628 1927 9.739276 TGTTCATTCCTTAGAGTTATGTTCAAT 57.261 29.630 0.00 0.00 0.00 2.57
1629 1928 9.994432 GTTCATTCCTTAGAGTTATGTTCAATG 57.006 33.333 0.00 0.00 0.00 2.82
1630 1929 8.213518 TCATTCCTTAGAGTTATGTTCAATGC 57.786 34.615 0.00 0.00 0.00 3.56
1631 1930 8.049117 TCATTCCTTAGAGTTATGTTCAATGCT 58.951 33.333 0.00 0.00 0.00 3.79
1632 1931 8.680903 CATTCCTTAGAGTTATGTTCAATGCTT 58.319 33.333 0.00 0.00 0.00 3.91
1633 1932 8.635765 TTCCTTAGAGTTATGTTCAATGCTTT 57.364 30.769 0.00 0.00 0.00 3.51
1634 1933 9.733556 TTCCTTAGAGTTATGTTCAATGCTTTA 57.266 29.630 0.00 0.00 0.00 1.85
1635 1934 9.383519 TCCTTAGAGTTATGTTCAATGCTTTAG 57.616 33.333 0.00 0.00 0.00 1.85
1636 1935 8.125448 CCTTAGAGTTATGTTCAATGCTTTAGC 58.875 37.037 0.00 0.00 42.50 3.09
1637 1936 8.792830 TTAGAGTTATGTTCAATGCTTTAGCT 57.207 30.769 3.10 0.00 42.66 3.32
1638 1937 7.693969 AGAGTTATGTTCAATGCTTTAGCTT 57.306 32.000 0.00 0.00 42.66 3.74
1639 1938 8.792830 AGAGTTATGTTCAATGCTTTAGCTTA 57.207 30.769 0.00 0.00 42.66 3.09
1640 1939 8.669243 AGAGTTATGTTCAATGCTTTAGCTTAC 58.331 33.333 0.00 0.00 42.66 2.34
1641 1940 8.567285 AGTTATGTTCAATGCTTTAGCTTACT 57.433 30.769 0.00 0.00 42.66 2.24
1642 1941 8.669243 AGTTATGTTCAATGCTTTAGCTTACTC 58.331 33.333 0.00 0.00 42.66 2.59
1643 1942 8.450964 GTTATGTTCAATGCTTTAGCTTACTCA 58.549 33.333 0.00 0.00 42.66 3.41
1644 1943 7.636150 ATGTTCAATGCTTTAGCTTACTCAT 57.364 32.000 0.00 0.00 42.66 2.90
1645 1944 6.845302 TGTTCAATGCTTTAGCTTACTCATG 58.155 36.000 0.00 0.00 42.66 3.07
1646 1945 5.490139 TCAATGCTTTAGCTTACTCATGC 57.510 39.130 0.00 0.00 42.66 4.06
1647 1946 4.034394 TCAATGCTTTAGCTTACTCATGCG 59.966 41.667 0.00 0.00 42.66 4.73
1648 1947 3.245518 TGCTTTAGCTTACTCATGCGA 57.754 42.857 0.00 0.00 42.66 5.10
1649 1948 3.595173 TGCTTTAGCTTACTCATGCGAA 58.405 40.909 0.00 0.00 42.66 4.70
1650 1949 4.000325 TGCTTTAGCTTACTCATGCGAAA 59.000 39.130 0.00 0.00 42.66 3.46
1651 1950 4.635765 TGCTTTAGCTTACTCATGCGAAAT 59.364 37.500 0.00 0.00 42.66 2.17
1652 1951 5.201181 GCTTTAGCTTACTCATGCGAAATC 58.799 41.667 0.00 0.00 34.41 2.17
1653 1952 5.389642 TTTAGCTTACTCATGCGAAATCG 57.610 39.130 0.00 0.00 43.27 3.34
1671 1971 6.183360 CGAAATCGCAATCAAAATTTGTGGAT 60.183 34.615 5.56 1.41 35.73 3.41
1675 1975 5.757320 TCGCAATCAAAATTTGTGGATTGTT 59.243 32.000 25.43 3.86 45.15 2.83
1676 1976 6.259608 TCGCAATCAAAATTTGTGGATTGTTT 59.740 30.769 25.43 8.23 45.15 2.83
1708 2008 1.259840 ATCACAAATGCACCAGGGGC 61.260 55.000 6.79 6.79 0.00 5.80
1716 2016 4.722700 CACCAGGGGCCTTGGACG 62.723 72.222 38.38 24.71 0.00 4.79
1732 2032 3.601435 TGGACGTCAACTTCAGTTTTCA 58.399 40.909 18.91 0.00 35.83 2.69
1752 2052 5.682234 TCACATGATGTACCATCTTCTGT 57.318 39.130 0.00 4.49 0.00 3.41
1753 2053 5.422145 TCACATGATGTACCATCTTCTGTG 58.578 41.667 18.43 18.43 0.00 3.66
1756 2056 3.599343 TGATGTACCATCTTCTGTGTGC 58.401 45.455 5.87 0.00 0.00 4.57
1779 2079 9.807649 GTGCCTGATGATATTTAACAAAGAATT 57.192 29.630 0.00 0.00 0.00 2.17
1795 2095 5.941948 AAGAATTCTCAAAACGGTAGGTG 57.058 39.130 8.78 0.00 0.00 4.00
1799 2099 1.156736 CTCAAAACGGTAGGTGGCTG 58.843 55.000 0.00 0.00 0.00 4.85
1800 2100 0.470766 TCAAAACGGTAGGTGGCTGT 59.529 50.000 0.00 0.00 0.00 4.40
1807 2107 1.450025 GGTAGGTGGCTGTTGCTTAC 58.550 55.000 0.00 0.00 39.59 2.34
1821 2121 2.809446 TGCTTACTCGGATCATTGACG 58.191 47.619 0.00 0.00 0.00 4.35
1831 2131 5.424757 TCGGATCATTGACGGTCTTAAAAT 58.575 37.500 9.88 0.00 0.00 1.82
1832 2132 5.293324 TCGGATCATTGACGGTCTTAAAATG 59.707 40.000 9.88 10.48 0.00 2.32
1833 2133 5.293324 CGGATCATTGACGGTCTTAAAATGA 59.707 40.000 18.23 18.23 40.45 2.57
1863 2164 6.094464 TCCTTTAATGTTCGATCGTACTGAGA 59.906 38.462 22.78 5.85 0.00 3.27
1892 2193 5.715753 ACTACCTAGTACTGCTTAGTGCTTT 59.284 40.000 5.39 0.00 37.39 3.51
1915 2216 3.441572 GCACTAATGGATTGCTTCACTGT 59.558 43.478 0.00 0.00 33.26 3.55
1916 2217 4.437930 GCACTAATGGATTGCTTCACTGTC 60.438 45.833 0.00 0.00 33.26 3.51
1928 2229 4.253685 GCTTCACTGTCCATAGTTGCTTA 58.746 43.478 0.00 0.00 0.00 3.09
1964 2265 3.486841 CAGAATCAACCACAAAGTTTGCG 59.513 43.478 15.59 6.07 0.00 4.85
2006 2307 6.931838 TCTCCAGTACAATGTACACCTTTAG 58.068 40.000 23.52 12.23 0.00 1.85
2033 2334 7.320443 TCTTATCATGTTATCCAAACAGTGC 57.680 36.000 0.00 0.00 33.18 4.40
2036 2337 4.397420 TCATGTTATCCAAACAGTGCACT 58.603 39.130 15.25 15.25 33.18 4.40
2044 2345 3.698539 TCCAAACAGTGCACTGAAAATCA 59.301 39.130 44.82 24.25 46.59 2.57
2062 2363 7.619302 TGAAAATCATTACCTTCTGGGCTTATT 59.381 33.333 0.00 0.00 39.10 1.40
2063 2364 7.978099 AAATCATTACCTTCTGGGCTTATTT 57.022 32.000 0.00 0.00 39.10 1.40
2064 2365 7.978099 AATCATTACCTTCTGGGCTTATTTT 57.022 32.000 0.00 0.00 39.10 1.82
2065 2366 7.588497 ATCATTACCTTCTGGGCTTATTTTC 57.412 36.000 0.00 0.00 39.10 2.29
2066 2367 6.731467 TCATTACCTTCTGGGCTTATTTTCT 58.269 36.000 0.00 0.00 39.10 2.52
2067 2368 6.603201 TCATTACCTTCTGGGCTTATTTTCTG 59.397 38.462 0.00 0.00 39.10 3.02
2068 2369 4.388577 ACCTTCTGGGCTTATTTTCTGT 57.611 40.909 0.00 0.00 39.10 3.41
2079 2380 6.055588 GGCTTATTTTCTGTGCTATCAGGTA 58.944 40.000 4.82 0.00 36.25 3.08
2092 2393 4.816925 GCTATCAGGTACAGAAAATCCCAC 59.183 45.833 0.00 0.00 0.00 4.61
2099 2400 0.454957 CAGAAAATCCCACGCAAGCG 60.455 55.000 13.50 13.50 46.03 4.68
2126 2427 6.747280 CGGTAGCCTTTAAAGATTTTCATGTG 59.253 38.462 16.98 0.00 0.00 3.21
2164 2465 4.653341 AGAAGATGGAGTGATAGAGGTTGG 59.347 45.833 0.00 0.00 0.00 3.77
2171 2472 2.375174 AGTGATAGAGGTTGGTTGGCAA 59.625 45.455 0.00 0.00 0.00 4.52
2175 2476 4.837860 TGATAGAGGTTGGTTGGCAATTTT 59.162 37.500 1.92 0.00 0.00 1.82
2181 2482 3.308530 GTTGGTTGGCAATTTTCTCTCG 58.691 45.455 1.92 0.00 0.00 4.04
2192 2493 7.012327 TGGCAATTTTCTCTCGGTAATAGAATG 59.988 37.037 0.00 0.00 0.00 2.67
2194 2495 7.012421 GCAATTTTCTCTCGGTAATAGAATGGT 59.988 37.037 0.00 0.00 0.00 3.55
2221 2522 6.650390 TGAAAATAAAATCCAGCTCTTTTGCC 59.350 34.615 7.94 0.00 0.00 4.52
2238 2539 8.055279 TCTTTTGCCGATTTCATCTTAATCTT 57.945 30.769 0.00 0.00 31.35 2.40
2244 2545 8.188139 TGCCGATTTCATCTTAATCTTTTTACC 58.812 33.333 0.00 0.00 31.35 2.85
2285 2586 8.446273 GTTACAAGACACAGATACGAGTAACTA 58.554 37.037 0.00 0.00 37.12 2.24
2304 2605 8.472413 AGTAACTATTAGCAGTAAAATGACGGA 58.528 33.333 0.00 0.00 0.00 4.69
2372 2673 0.391263 ACTTCCAGGATTTCGGCGAC 60.391 55.000 10.16 0.00 0.00 5.19
2388 2689 1.737363 GCGACTGAAAGGAGGTAGCAG 60.737 57.143 0.00 0.00 39.30 4.24
2477 2778 9.829507 ATTCGATCTTGTATCTTCAAAATCTCT 57.170 29.630 0.00 0.00 0.00 3.10
2482 2783 7.334090 TCTTGTATCTTCAAAATCTCTGGAGG 58.666 38.462 0.00 0.00 0.00 4.30
2486 2787 5.567037 TCTTCAAAATCTCTGGAGGTCAA 57.433 39.130 0.00 0.00 0.00 3.18
2551 2852 6.379133 ACAAATGGCTTCTTGATGTGTCATAT 59.621 34.615 1.69 0.00 33.56 1.78
2641 2953 6.879458 ACCGTAGATTGCACTTCTCTTATTTT 59.121 34.615 1.70 0.00 0.00 1.82
2642 2954 8.038944 ACCGTAGATTGCACTTCTCTTATTTTA 58.961 33.333 1.70 0.00 0.00 1.52
2666 2978 6.870971 TTTACCTTTTCGTCTTTGTAGCAT 57.129 33.333 0.00 0.00 0.00 3.79
2670 2982 5.977129 ACCTTTTCGTCTTTGTAGCATTTTG 59.023 36.000 0.00 0.00 0.00 2.44
2689 3001 7.062255 GCATTTTGAATTGTTACAGCTTAGACC 59.938 37.037 0.00 0.00 0.00 3.85
2737 3052 1.499049 GTGGTCACTTTCCTCGACAC 58.501 55.000 0.00 0.00 0.00 3.67
2776 3097 6.382859 ACAGGGAAAACTCCAAATGTAAGTTT 59.617 34.615 5.72 5.72 43.22 2.66
2909 3230 1.081892 CTCTGCACTTGATTGGACCG 58.918 55.000 0.00 0.00 0.00 4.79
2948 3269 4.565564 GCAGCCATCAAGAAAATCATCAAC 59.434 41.667 0.00 0.00 0.00 3.18
2999 3320 6.216868 AGGTAACAACTACTATCCATGGGTTT 59.783 38.462 13.02 0.00 41.41 3.27
3046 3367 4.458989 GGTCATTTACCTCTGTTGCATTGA 59.541 41.667 0.00 0.00 45.75 2.57
3072 3393 1.738099 CAGGAGAACCTTGACGCGG 60.738 63.158 12.47 0.00 45.36 6.46
3074 3395 2.357034 GAGAACCTTGACGCGGCA 60.357 61.111 12.71 12.71 0.00 5.69
3217 3538 3.240884 CGATGCCATTAGAGAGATGACG 58.759 50.000 0.00 0.00 0.00 4.35
3244 3565 4.369591 TGGGGGACTCCTGGGCAT 62.370 66.667 0.00 0.00 35.33 4.40
3315 3638 4.093011 CCCTATTGCTATCTCTACTGGCT 58.907 47.826 0.00 0.00 0.00 4.75
3316 3639 5.265191 CCCTATTGCTATCTCTACTGGCTA 58.735 45.833 0.00 0.00 0.00 3.93
3358 3681 2.434702 CGGGGGCAACTCTATTCTAGTT 59.565 50.000 0.00 0.00 37.67 2.24
3413 3736 3.059966 GGAAAAATCGTCGTTACCGAGTC 59.940 47.826 0.00 0.00 45.26 3.36
3415 3738 0.097674 AATCGTCGTTACCGAGTCCG 59.902 55.000 0.00 0.00 45.26 4.79
3416 3739 0.740868 ATCGTCGTTACCGAGTCCGA 60.741 55.000 0.00 0.00 45.26 4.55
3417 3740 1.059994 CGTCGTTACCGAGTCCGAG 59.940 63.158 0.00 0.00 45.26 4.63
3418 3741 1.630244 CGTCGTTACCGAGTCCGAGT 61.630 60.000 0.00 0.00 45.26 4.18
3419 3742 1.359848 GTCGTTACCGAGTCCGAGTA 58.640 55.000 0.00 0.00 45.26 2.59
3420 3743 1.061276 GTCGTTACCGAGTCCGAGTAC 59.939 57.143 0.00 0.00 45.26 2.73
3421 3744 1.078709 CGTTACCGAGTCCGAGTACA 58.921 55.000 0.00 0.00 38.22 2.90
3422 3745 1.201965 CGTTACCGAGTCCGAGTACAC 60.202 57.143 0.00 0.00 38.22 2.90
3423 3746 1.131315 GTTACCGAGTCCGAGTACACC 59.869 57.143 0.00 0.00 38.22 4.16
3424 3747 0.740868 TACCGAGTCCGAGTACACCG 60.741 60.000 0.00 0.00 38.22 4.94
3425 3748 2.037136 CCGAGTCCGAGTACACCGT 61.037 63.158 0.00 0.00 38.22 4.83
3426 3749 1.580845 CCGAGTCCGAGTACACCGTT 61.581 60.000 0.00 0.00 38.22 4.44
3427 3750 0.453950 CGAGTCCGAGTACACCGTTG 60.454 60.000 0.00 0.00 38.22 4.10
3433 3756 1.214367 CGAGTACACCGTTGTTTGCT 58.786 50.000 0.00 0.00 37.15 3.91
3442 3765 1.263217 CCGTTGTTTGCTGAGTACCAC 59.737 52.381 0.00 0.00 0.00 4.16
3474 3797 0.526662 CGGTGAAGGACTCGTAAGCT 59.473 55.000 0.00 0.00 37.18 3.74
3487 3810 3.332919 TCGTAAGCTGAGTACGACTCTT 58.667 45.455 13.68 5.44 46.13 2.85
3491 3814 0.243907 GCTGAGTACGACTCTTGGCA 59.756 55.000 13.65 0.00 45.27 4.92
3506 3829 4.687215 GCAGACAGCAGGGCACGA 62.687 66.667 0.00 0.00 44.79 4.35
3518 3841 2.102420 CAGGGCACGACATATGGTAGAA 59.898 50.000 7.80 0.00 0.00 2.10
3529 3852 0.613260 ATGGTAGAAGCTGCCGAACA 59.387 50.000 0.00 0.00 39.12 3.18
3530 3853 0.320421 TGGTAGAAGCTGCCGAACAC 60.320 55.000 0.00 0.00 39.12 3.32
3535 3858 3.254024 AAGCTGCCGAACACCCGAT 62.254 57.895 0.00 0.00 0.00 4.18
3570 3893 2.549754 CAAACATGACAGAACTCGGCTT 59.450 45.455 0.00 0.00 0.00 4.35
3590 3946 0.610232 ACGGAGCGTGTACCCTTAGT 60.610 55.000 0.00 0.00 39.18 2.24
3592 3948 0.100146 GGAGCGTGTACCCTTAGTCG 59.900 60.000 0.00 0.00 0.00 4.18
3603 3959 4.031636 ACCCTTAGTCGAGAACTACACT 57.968 45.455 0.00 0.00 40.23 3.55
3604 3960 4.009002 ACCCTTAGTCGAGAACTACACTC 58.991 47.826 0.00 0.00 40.23 3.51
3605 3961 4.263418 ACCCTTAGTCGAGAACTACACTCT 60.263 45.833 0.00 0.00 40.23 3.24
3621 3977 1.419387 ACTCTTGGCAAACTCTCTGCT 59.581 47.619 0.00 0.00 39.82 4.24
3622 3978 1.805345 CTCTTGGCAAACTCTCTGCTG 59.195 52.381 0.00 0.00 39.82 4.41
3651 4007 4.441998 GCTTTCGCCGAGCTTTTC 57.558 55.556 0.00 0.00 37.18 2.29
3659 4015 3.951332 CGAGCTTTTCGGCACTCA 58.049 55.556 0.00 0.00 45.54 3.41
3660 4016 1.784062 CGAGCTTTTCGGCACTCAG 59.216 57.895 0.00 0.00 45.54 3.35
3661 4017 1.630244 CGAGCTTTTCGGCACTCAGG 61.630 60.000 0.00 0.00 45.54 3.86
3662 4018 0.320771 GAGCTTTTCGGCACTCAGGA 60.321 55.000 0.00 0.00 34.17 3.86
3663 4019 0.108585 AGCTTTTCGGCACTCAGGAA 59.891 50.000 0.00 0.00 34.17 3.36
3664 4020 0.951558 GCTTTTCGGCACTCAGGAAA 59.048 50.000 0.00 0.00 0.00 3.13
3665 4021 1.068954 GCTTTTCGGCACTCAGGAAAG 60.069 52.381 0.00 0.00 31.94 2.62
3666 4022 2.222027 CTTTTCGGCACTCAGGAAAGT 58.778 47.619 0.00 0.00 31.94 2.66
3667 4023 2.341846 TTTCGGCACTCAGGAAAGTT 57.658 45.000 0.00 0.00 0.00 2.66
3668 4024 1.593196 TTCGGCACTCAGGAAAGTTG 58.407 50.000 0.00 0.00 0.00 3.16
3669 4025 0.250295 TCGGCACTCAGGAAAGTTGG 60.250 55.000 0.00 0.00 0.00 3.77
3670 4026 0.250295 CGGCACTCAGGAAAGTTGGA 60.250 55.000 0.00 0.00 0.00 3.53
3671 4027 1.813862 CGGCACTCAGGAAAGTTGGAA 60.814 52.381 0.00 0.00 0.00 3.53
3672 4028 1.609072 GGCACTCAGGAAAGTTGGAAC 59.391 52.381 0.00 0.00 0.00 3.62
3673 4029 2.576615 GCACTCAGGAAAGTTGGAACT 58.423 47.619 0.00 0.00 42.04 3.01
3674 4030 3.496160 GGCACTCAGGAAAGTTGGAACTA 60.496 47.826 0.00 0.00 38.57 2.24
3675 4031 3.498777 GCACTCAGGAAAGTTGGAACTAC 59.501 47.826 0.00 0.00 38.57 2.73
3676 4032 4.703897 CACTCAGGAAAGTTGGAACTACA 58.296 43.478 0.00 0.00 38.57 2.74
3677 4033 4.511826 CACTCAGGAAAGTTGGAACTACAC 59.488 45.833 0.00 0.00 38.57 2.90
3678 4034 4.409247 ACTCAGGAAAGTTGGAACTACACT 59.591 41.667 0.00 0.00 38.57 3.55
3679 4035 4.957296 TCAGGAAAGTTGGAACTACACTC 58.043 43.478 0.00 0.00 38.57 3.51
3680 4036 4.654262 TCAGGAAAGTTGGAACTACACTCT 59.346 41.667 0.00 0.00 38.57 3.24
3681 4037 5.130477 TCAGGAAAGTTGGAACTACACTCTT 59.870 40.000 0.00 0.00 38.57 2.85
3682 4038 5.237344 CAGGAAAGTTGGAACTACACTCTTG 59.763 44.000 0.00 0.00 38.57 3.02
3683 4039 4.515567 GGAAAGTTGGAACTACACTCTTGG 59.484 45.833 0.00 0.00 38.57 3.61
3684 4040 3.127425 AGTTGGAACTACACTCTTGGC 57.873 47.619 0.00 0.00 37.52 4.52
3685 4041 2.438021 AGTTGGAACTACACTCTTGGCA 59.562 45.455 0.00 0.00 37.52 4.92
3686 4042 3.118038 AGTTGGAACTACACTCTTGGCAA 60.118 43.478 0.00 0.00 37.52 4.52
3687 4043 3.569194 TGGAACTACACTCTTGGCAAA 57.431 42.857 0.00 0.00 0.00 3.68
3688 4044 3.211045 TGGAACTACACTCTTGGCAAAC 58.789 45.455 0.00 0.00 0.00 2.93
3689 4045 3.118038 TGGAACTACACTCTTGGCAAACT 60.118 43.478 0.00 0.00 0.00 2.66
3690 4046 3.498777 GGAACTACACTCTTGGCAAACTC 59.501 47.826 0.00 0.00 0.00 3.01
3691 4047 4.381411 GAACTACACTCTTGGCAAACTCT 58.619 43.478 0.00 0.00 0.00 3.24
3692 4048 3.996480 ACTACACTCTTGGCAAACTCTC 58.004 45.455 0.00 0.00 0.00 3.20
3693 4049 3.643792 ACTACACTCTTGGCAAACTCTCT 59.356 43.478 0.00 0.00 0.00 3.10
3694 4050 2.843701 ACACTCTTGGCAAACTCTCTG 58.156 47.619 0.00 0.00 0.00 3.35
3695 4051 1.534595 CACTCTTGGCAAACTCTCTGC 59.465 52.381 0.00 0.00 39.16 4.26
3696 4052 1.419387 ACTCTTGGCAAACTCTCTGCT 59.581 47.619 0.00 0.00 39.82 4.24
3697 4053 1.805345 CTCTTGGCAAACTCTCTGCTG 59.195 52.381 0.00 0.00 39.82 4.41
3698 4054 1.417517 TCTTGGCAAACTCTCTGCTGA 59.582 47.619 0.00 0.00 39.82 4.26
3699 4055 1.805345 CTTGGCAAACTCTCTGCTGAG 59.195 52.381 14.07 14.07 39.82 3.35
3701 4057 1.155042 GGCAAACTCTCTGCTGAGTG 58.845 55.000 18.82 18.31 45.49 3.51
3702 4058 1.542108 GGCAAACTCTCTGCTGAGTGT 60.542 52.381 19.00 19.00 45.49 3.55
3703 4059 2.289072 GGCAAACTCTCTGCTGAGTGTA 60.289 50.000 23.18 4.84 45.49 2.90
3704 4060 3.393800 GCAAACTCTCTGCTGAGTGTAA 58.606 45.455 23.18 4.52 45.49 2.41
3705 4061 3.809832 GCAAACTCTCTGCTGAGTGTAAA 59.190 43.478 23.18 4.19 45.49 2.01
3706 4062 4.273480 GCAAACTCTCTGCTGAGTGTAAAA 59.727 41.667 23.18 3.55 45.49 1.52
3707 4063 5.049129 GCAAACTCTCTGCTGAGTGTAAAAT 60.049 40.000 23.18 9.47 45.49 1.82
3708 4064 6.369005 CAAACTCTCTGCTGAGTGTAAAATG 58.631 40.000 23.18 16.81 45.49 2.32
3709 4065 4.573900 ACTCTCTGCTGAGTGTAAAATGG 58.426 43.478 22.07 6.29 44.64 3.16
3710 4066 3.338249 TCTCTGCTGAGTGTAAAATGGC 58.662 45.455 18.82 0.00 40.98 4.40
3711 4067 3.008375 TCTCTGCTGAGTGTAAAATGGCT 59.992 43.478 18.82 0.00 40.98 4.75
3712 4068 3.754965 TCTGCTGAGTGTAAAATGGCTT 58.245 40.909 0.00 0.00 0.00 4.35
3713 4069 4.144297 TCTGCTGAGTGTAAAATGGCTTT 58.856 39.130 0.00 0.00 0.00 3.51
3714 4070 4.216257 TCTGCTGAGTGTAAAATGGCTTTC 59.784 41.667 0.00 0.00 0.00 2.62
3715 4071 3.058293 TGCTGAGTGTAAAATGGCTTTCG 60.058 43.478 0.00 0.00 0.00 3.46
3716 4072 3.492313 CTGAGTGTAAAATGGCTTTCGC 58.508 45.455 0.00 0.00 0.00 4.70
3740 4096 2.618709 AGTTTTTCGGCACTCAGGAAAG 59.381 45.455 0.00 0.00 31.94 2.62
3770 4126 4.612264 TCCAGTAGTGTTGGGTTAAGAC 57.388 45.455 0.00 0.00 36.34 3.01
3807 4163 4.037565 GGGGAGGGAATTTATAAGCAAACG 59.962 45.833 0.00 0.00 0.00 3.60
3848 4204 6.082338 GTGATTGAGATTGTGTGCTTACAAG 58.918 40.000 11.05 0.00 43.14 3.16
3870 4254 7.870954 ACAAGTACGTGAGTTTGATTCTATTGA 59.129 33.333 16.00 0.00 46.40 2.57
3871 4255 8.873830 CAAGTACGTGAGTTTGATTCTATTGAT 58.126 33.333 2.23 0.00 46.40 2.57
3983 4369 4.093743 GGGTTACCATGGGATTTGTTTCT 58.906 43.478 18.09 0.00 36.50 2.52
4000 4386 1.376037 CTCAGGAAACGAGGTGGGC 60.376 63.158 0.00 0.00 0.00 5.36
4018 4410 1.483316 GCGGTCGTTTTGGGAAAAAG 58.517 50.000 0.00 0.00 31.13 2.27
4043 4435 5.920193 AATGAGGTTATCACATGGTTTGG 57.080 39.130 0.00 0.00 41.91 3.28
4080 4490 1.369091 CGATGGAAGGGGTGAAAGCG 61.369 60.000 0.00 0.00 33.03 4.68
4089 4499 1.087501 GGGTGAAAGCGATGGAAGTC 58.912 55.000 0.00 0.00 33.03 3.01
4151 4563 6.182627 TGATCATGGATGCTAGTCTGTTTTT 58.817 36.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.007614 TGGTTCAGTAGTAAGCCCTTGTC 59.992 47.826 0.00 0.00 0.00 3.18
66 67 9.508567 GATTTTGAAGCTATAAATCTTGTCACC 57.491 33.333 15.48 0.00 36.07 4.02
103 108 4.096984 CCATAACATCTCTCCCTTGCAAAC 59.903 45.833 0.00 0.00 0.00 2.93
160 174 1.083489 TTGCCCGATTTCGATGTGTC 58.917 50.000 0.67 0.00 43.02 3.67
236 250 1.966901 TTGATGGACTACGGCGGCAT 61.967 55.000 13.24 0.00 0.00 4.40
255 269 1.152963 GGGTTGCGGCCTGTGATAT 60.153 57.895 0.00 0.00 0.00 1.63
349 363 3.326836 TGTATGTCGAGTGGCATTTGA 57.673 42.857 0.00 0.00 0.00 2.69
360 374 6.017357 AGAGCGACTGTATTTATGTATGTCGA 60.017 38.462 15.19 0.00 45.49 4.20
383 397 2.829720 ACCTACGGAGTAATTGTGCAGA 59.170 45.455 0.00 0.00 45.13 4.26
403 417 4.783764 AGGTTCAAAATTGATCGGGAAC 57.216 40.909 0.00 0.00 37.00 3.62
417 457 4.157289 CGTAGCTAGTTCCAGTAGGTTCAA 59.843 45.833 0.00 0.00 34.13 2.69
435 475 0.179111 TAGCTCACACATGCCGTAGC 60.179 55.000 0.00 0.00 40.48 3.58
461 504 5.573669 GGTTCAGATAGTTTCAGAGTTCGAC 59.426 44.000 0.00 0.00 0.00 4.20
549 612 5.091261 TGGTTCTTCTCCAAGATAAGAGC 57.909 43.478 0.00 0.00 38.50 4.09
560 623 4.517285 TGTGATATTGCTGGTTCTTCTCC 58.483 43.478 0.00 0.00 0.00 3.71
562 625 3.944015 GCTGTGATATTGCTGGTTCTTCT 59.056 43.478 0.00 0.00 0.00 2.85
569 632 4.707030 TTCTTTGCTGTGATATTGCTGG 57.293 40.909 0.00 0.00 0.00 4.85
617 715 3.604582 CTTCTCCCTGATGGAAACTGTC 58.395 50.000 0.00 0.00 44.57 3.51
660 758 1.071814 GGTCGGTGCCCACTAACAA 59.928 57.895 0.00 0.00 0.00 2.83
685 783 2.887568 CAGTCTAAGCGCCGCCTG 60.888 66.667 4.98 0.92 0.00 4.85
810 908 6.017523 CACTACTCTCAGATTCTATCTCGCAA 60.018 42.308 0.00 0.00 37.58 4.85
811 909 5.468409 CACTACTCTCAGATTCTATCTCGCA 59.532 44.000 0.00 0.00 37.58 5.10
814 926 7.878127 ACTAGCACTACTCTCAGATTCTATCTC 59.122 40.741 0.00 0.00 37.58 2.75
818 930 6.890293 TCACTAGCACTACTCTCAGATTCTA 58.110 40.000 0.00 0.00 0.00 2.10
828 940 3.254892 GCCTGTTTCACTAGCACTACTC 58.745 50.000 0.00 0.00 0.00 2.59
829 941 2.632996 TGCCTGTTTCACTAGCACTACT 59.367 45.455 0.00 0.00 0.00 2.57
848 960 3.112709 GGACAGAACGCTCCGTGC 61.113 66.667 0.00 0.00 39.99 5.34
869 981 3.011119 CCCGACCGTTTATTTCCAATCA 58.989 45.455 0.00 0.00 0.00 2.57
875 987 2.908916 TGGATCCCGACCGTTTATTTC 58.091 47.619 9.90 0.00 0.00 2.17
880 992 1.298667 CCTTGGATCCCGACCGTTT 59.701 57.895 9.90 0.00 0.00 3.60
949 1068 3.615834 GCCTTCCAATTCCAAGCAAGAAG 60.616 47.826 0.00 0.00 0.00 2.85
1041 1160 0.462759 CCTTGAGATTCACGAGGCCC 60.463 60.000 0.00 0.00 32.98 5.80
1042 1161 0.250513 ACCTTGAGATTCACGAGGCC 59.749 55.000 15.21 0.00 41.30 5.19
1078 1197 3.934962 GCATCGGAGAGAGGGGGC 61.935 72.222 0.00 0.00 43.63 5.80
1100 1219 3.806949 ACATAAAGCACCCCTCAAGAA 57.193 42.857 0.00 0.00 0.00 2.52
1109 1228 3.555966 AGGCAAGGATACATAAAGCACC 58.444 45.455 0.00 0.00 41.41 5.01
1143 1262 7.581213 TCCCCAACATAATAATTCACATCAC 57.419 36.000 0.00 0.00 0.00 3.06
1157 1279 5.327737 AAAGTACCAACTTCCCCAACATA 57.672 39.130 0.00 0.00 45.37 2.29
1158 1280 3.895704 AAGTACCAACTTCCCCAACAT 57.104 42.857 0.00 0.00 42.42 2.71
1161 1283 5.768752 AGTAAAAAGTACCAACTTCCCCAA 58.231 37.500 0.00 0.00 45.37 4.12
1162 1284 5.391577 AGTAAAAAGTACCAACTTCCCCA 57.608 39.130 0.00 0.00 45.37 4.96
1164 1286 5.526115 GCAAGTAAAAAGTACCAACTTCCC 58.474 41.667 0.00 0.00 45.37 3.97
1165 1287 5.209977 CGCAAGTAAAAAGTACCAACTTCC 58.790 41.667 0.00 0.00 45.37 3.46
1166 1288 4.673761 GCGCAAGTAAAAAGTACCAACTTC 59.326 41.667 0.30 0.00 42.27 3.01
1167 1289 4.096682 TGCGCAAGTAAAAAGTACCAACTT 59.903 37.500 8.16 0.00 44.04 2.66
1168 1290 3.628487 TGCGCAAGTAAAAAGTACCAACT 59.372 39.130 8.16 0.00 41.68 3.16
1175 1457 4.568152 ATGAACTGCGCAAGTAAAAAGT 57.432 36.364 13.05 0.00 38.56 2.66
1182 1464 0.385029 TTGCAATGAACTGCGCAAGT 59.615 45.000 13.05 9.24 45.74 3.16
1183 1465 1.705256 ATTGCAATGAACTGCGCAAG 58.295 45.000 13.05 8.51 46.54 4.01
1191 1474 6.161381 ACCATTCTCTTCAATTGCAATGAAC 58.839 36.000 13.82 0.00 33.47 3.18
1194 1477 6.255020 GCTAACCATTCTCTTCAATTGCAATG 59.745 38.462 13.82 7.57 0.00 2.82
1195 1478 6.071221 TGCTAACCATTCTCTTCAATTGCAAT 60.071 34.615 5.99 5.99 0.00 3.56
1215 1498 7.451255 CAGGAAAATATATCACCCCAATGCTAA 59.549 37.037 0.00 0.00 0.00 3.09
1223 1506 4.041198 TCGGACAGGAAAATATATCACCCC 59.959 45.833 0.00 0.00 0.00 4.95
1226 1509 8.524487 ACTATCTCGGACAGGAAAATATATCAC 58.476 37.037 0.00 0.00 0.00 3.06
1231 1514 5.602978 ACCACTATCTCGGACAGGAAAATAT 59.397 40.000 0.00 0.00 0.00 1.28
1237 1520 2.100197 CAACCACTATCTCGGACAGGA 58.900 52.381 0.00 0.00 0.00 3.86
1240 1523 0.535335 GCCAACCACTATCTCGGACA 59.465 55.000 0.00 0.00 0.00 4.02
1241 1524 0.824759 AGCCAACCACTATCTCGGAC 59.175 55.000 0.00 0.00 0.00 4.79
1244 1527 5.873179 TTTTTAAGCCAACCACTATCTCG 57.127 39.130 0.00 0.00 0.00 4.04
1269 1552 5.897377 TGAGGTAAAATTTAAGAGCTGGC 57.103 39.130 0.00 0.00 0.00 4.85
1286 1570 6.818142 CCAAAATTCTTCACAAGTTTTGAGGT 59.182 34.615 9.65 0.00 40.41 3.85
1287 1571 6.258507 CCCAAAATTCTTCACAAGTTTTGAGG 59.741 38.462 9.65 0.00 40.41 3.86
1289 1573 6.706295 ACCCAAAATTCTTCACAAGTTTTGA 58.294 32.000 9.65 0.00 40.41 2.69
1291 1575 7.164803 TGAACCCAAAATTCTTCACAAGTTTT 58.835 30.769 0.00 0.00 0.00 2.43
1306 1593 7.741785 TCTACTTCTAATCACTGAACCCAAAA 58.258 34.615 0.00 0.00 0.00 2.44
1325 1612 5.122396 GCAAATTCCATCGTGAGTTCTACTT 59.878 40.000 0.00 0.00 0.00 2.24
1327 1614 4.391830 TGCAAATTCCATCGTGAGTTCTAC 59.608 41.667 0.00 0.00 0.00 2.59
1330 1617 3.058293 TGTGCAAATTCCATCGTGAGTTC 60.058 43.478 0.00 0.00 0.00 3.01
1331 1618 2.884012 TGTGCAAATTCCATCGTGAGTT 59.116 40.909 0.00 0.00 0.00 3.01
1335 1622 3.189080 TCTCTTGTGCAAATTCCATCGTG 59.811 43.478 0.00 0.00 0.00 4.35
1340 1627 4.717877 TCTTCTCTCTTGTGCAAATTCCA 58.282 39.130 0.00 0.00 0.00 3.53
1341 1628 5.893897 ATCTTCTCTCTTGTGCAAATTCC 57.106 39.130 0.00 0.00 0.00 3.01
1379 1666 5.394115 GGCTGAGAAAGGAACAAAACAAAGA 60.394 40.000 0.00 0.00 0.00 2.52
1380 1667 4.805719 GGCTGAGAAAGGAACAAAACAAAG 59.194 41.667 0.00 0.00 0.00 2.77
1383 1670 3.631250 AGGCTGAGAAAGGAACAAAACA 58.369 40.909 0.00 0.00 0.00 2.83
1384 1671 4.363138 CAAGGCTGAGAAAGGAACAAAAC 58.637 43.478 0.00 0.00 0.00 2.43
1385 1672 3.384467 CCAAGGCTGAGAAAGGAACAAAA 59.616 43.478 0.00 0.00 0.00 2.44
1386 1673 2.958355 CCAAGGCTGAGAAAGGAACAAA 59.042 45.455 0.00 0.00 0.00 2.83
1387 1674 2.586425 CCAAGGCTGAGAAAGGAACAA 58.414 47.619 0.00 0.00 0.00 2.83
1388 1675 1.819305 GCCAAGGCTGAGAAAGGAACA 60.819 52.381 3.29 0.00 38.26 3.18
1389 1676 0.884514 GCCAAGGCTGAGAAAGGAAC 59.115 55.000 3.29 0.00 38.26 3.62
1390 1677 0.478072 TGCCAAGGCTGAGAAAGGAA 59.522 50.000 12.96 0.00 42.51 3.36
1391 1678 0.700564 ATGCCAAGGCTGAGAAAGGA 59.299 50.000 12.96 0.00 42.51 3.36
1392 1679 1.553706 AATGCCAAGGCTGAGAAAGG 58.446 50.000 12.96 0.00 42.51 3.11
1393 1680 4.012374 TCTTAATGCCAAGGCTGAGAAAG 58.988 43.478 12.96 8.76 42.51 2.62
1394 1681 4.012374 CTCTTAATGCCAAGGCTGAGAAA 58.988 43.478 12.96 0.00 42.51 2.52
1395 1682 3.614092 CTCTTAATGCCAAGGCTGAGAA 58.386 45.455 12.96 1.01 42.51 2.87
1396 1683 2.092753 CCTCTTAATGCCAAGGCTGAGA 60.093 50.000 12.96 8.86 42.51 3.27
1397 1684 2.295885 CCTCTTAATGCCAAGGCTGAG 58.704 52.381 12.96 10.89 42.51 3.35
1398 1685 1.064463 CCCTCTTAATGCCAAGGCTGA 60.064 52.381 12.96 0.00 42.51 4.26
1399 1686 1.341383 ACCCTCTTAATGCCAAGGCTG 60.341 52.381 12.96 0.00 42.51 4.85
1400 1687 1.002857 ACCCTCTTAATGCCAAGGCT 58.997 50.000 12.96 0.00 42.51 4.58
1401 1688 1.852633 AACCCTCTTAATGCCAAGGC 58.147 50.000 3.61 3.61 42.35 4.35
1402 1689 4.770010 TGTTTAACCCTCTTAATGCCAAGG 59.230 41.667 0.00 0.00 0.00 3.61
1403 1690 5.975693 TGTTTAACCCTCTTAATGCCAAG 57.024 39.130 0.00 0.00 0.00 3.61
1404 1691 6.517605 GTTTGTTTAACCCTCTTAATGCCAA 58.482 36.000 0.00 0.00 0.00 4.52
1405 1692 5.278561 CGTTTGTTTAACCCTCTTAATGCCA 60.279 40.000 0.00 0.00 32.92 4.92
1406 1693 5.158494 CGTTTGTTTAACCCTCTTAATGCC 58.842 41.667 0.00 0.00 32.92 4.40
1407 1694 4.619760 GCGTTTGTTTAACCCTCTTAATGC 59.380 41.667 0.00 0.00 32.92 3.56
1417 1704 1.483316 GCAGGTGCGTTTGTTTAACC 58.517 50.000 0.00 0.00 32.92 2.85
1434 1721 1.323412 ATTAAACAACAGCACCCGCA 58.677 45.000 0.00 0.00 42.27 5.69
1435 1722 2.287909 TGAATTAAACAACAGCACCCGC 60.288 45.455 0.00 0.00 38.99 6.13
1444 1735 7.651704 ACCTTACATTGTGCTGAATTAAACAAC 59.348 33.333 0.00 0.00 35.51 3.32
1478 1769 7.176515 TGCCTGTCTGAACATAACATACATTTT 59.823 33.333 0.00 0.00 34.13 1.82
1480 1771 6.179756 TGCCTGTCTGAACATAACATACATT 58.820 36.000 0.00 0.00 34.13 2.71
1481 1772 5.744171 TGCCTGTCTGAACATAACATACAT 58.256 37.500 0.00 0.00 34.13 2.29
1482 1773 5.159273 TGCCTGTCTGAACATAACATACA 57.841 39.130 0.00 0.00 34.13 2.29
1483 1774 5.447818 GCTTGCCTGTCTGAACATAACATAC 60.448 44.000 0.00 0.00 34.13 2.39
1484 1775 4.635765 GCTTGCCTGTCTGAACATAACATA 59.364 41.667 0.00 0.00 34.13 2.29
1485 1776 3.441572 GCTTGCCTGTCTGAACATAACAT 59.558 43.478 0.00 0.00 34.13 2.71
1486 1777 2.813754 GCTTGCCTGTCTGAACATAACA 59.186 45.455 0.00 0.00 34.13 2.41
1487 1778 2.813754 TGCTTGCCTGTCTGAACATAAC 59.186 45.455 0.00 0.00 34.13 1.89
1488 1779 2.813754 GTGCTTGCCTGTCTGAACATAA 59.186 45.455 0.00 0.00 34.13 1.90
1521 1820 9.950680 CGAAATTTAATGCAAAGTGTCCTATAT 57.049 29.630 0.00 0.00 0.00 0.86
1522 1821 7.913297 GCGAAATTTAATGCAAAGTGTCCTATA 59.087 33.333 0.00 0.00 0.00 1.31
1523 1822 6.751888 GCGAAATTTAATGCAAAGTGTCCTAT 59.248 34.615 0.00 0.00 0.00 2.57
1524 1823 6.072175 AGCGAAATTTAATGCAAAGTGTCCTA 60.072 34.615 10.90 0.00 0.00 2.94
1525 1824 4.923281 GCGAAATTTAATGCAAAGTGTCCT 59.077 37.500 0.00 0.00 0.00 3.85
1526 1825 4.923281 AGCGAAATTTAATGCAAAGTGTCC 59.077 37.500 10.90 0.00 0.00 4.02
1527 1826 5.629020 TGAGCGAAATTTAATGCAAAGTGTC 59.371 36.000 10.90 1.71 0.00 3.67
1528 1827 5.527951 TGAGCGAAATTTAATGCAAAGTGT 58.472 33.333 10.90 0.00 0.00 3.55
1529 1828 6.400303 CCTTGAGCGAAATTTAATGCAAAGTG 60.400 38.462 10.90 6.06 0.00 3.16
1530 1829 5.634859 CCTTGAGCGAAATTTAATGCAAAGT 59.365 36.000 10.90 0.00 0.00 2.66
1531 1830 5.863397 TCCTTGAGCGAAATTTAATGCAAAG 59.137 36.000 10.90 12.03 0.00 2.77
1532 1831 5.777802 TCCTTGAGCGAAATTTAATGCAAA 58.222 33.333 10.90 5.44 0.00 3.68
1533 1832 5.384063 TCCTTGAGCGAAATTTAATGCAA 57.616 34.783 10.90 4.73 0.00 4.08
1534 1833 5.384063 TTCCTTGAGCGAAATTTAATGCA 57.616 34.783 10.90 0.00 0.00 3.96
1535 1834 4.800471 CCTTCCTTGAGCGAAATTTAATGC 59.200 41.667 0.00 0.00 0.00 3.56
1536 1835 5.343249 CCCTTCCTTGAGCGAAATTTAATG 58.657 41.667 0.00 0.00 0.00 1.90
1537 1836 4.402474 CCCCTTCCTTGAGCGAAATTTAAT 59.598 41.667 0.00 0.00 0.00 1.40
1538 1837 3.761752 CCCCTTCCTTGAGCGAAATTTAA 59.238 43.478 0.00 0.00 0.00 1.52
1539 1838 3.009695 TCCCCTTCCTTGAGCGAAATTTA 59.990 43.478 0.00 0.00 0.00 1.40
1540 1839 2.171003 CCCCTTCCTTGAGCGAAATTT 58.829 47.619 0.00 0.00 0.00 1.82
1541 1840 1.354368 TCCCCTTCCTTGAGCGAAATT 59.646 47.619 0.00 0.00 0.00 1.82
1542 1841 0.991920 TCCCCTTCCTTGAGCGAAAT 59.008 50.000 0.00 0.00 0.00 2.17
1543 1842 0.324943 CTCCCCTTCCTTGAGCGAAA 59.675 55.000 0.00 0.00 0.00 3.46
1544 1843 0.544357 TCTCCCCTTCCTTGAGCGAA 60.544 55.000 0.00 0.00 0.00 4.70
1545 1844 0.544357 TTCTCCCCTTCCTTGAGCGA 60.544 55.000 0.00 0.00 0.00 4.93
1546 1845 0.324943 TTTCTCCCCTTCCTTGAGCG 59.675 55.000 0.00 0.00 0.00 5.03
1547 1846 2.163509 GTTTTCTCCCCTTCCTTGAGC 58.836 52.381 0.00 0.00 0.00 4.26
1548 1847 3.508845 TGTTTTCTCCCCTTCCTTGAG 57.491 47.619 0.00 0.00 0.00 3.02
1549 1848 3.963476 TTGTTTTCTCCCCTTCCTTGA 57.037 42.857 0.00 0.00 0.00 3.02
1550 1849 4.219288 CAGATTGTTTTCTCCCCTTCCTTG 59.781 45.833 0.00 0.00 0.00 3.61
1551 1850 4.411013 CAGATTGTTTTCTCCCCTTCCTT 58.589 43.478 0.00 0.00 0.00 3.36
1552 1851 3.245407 CCAGATTGTTTTCTCCCCTTCCT 60.245 47.826 0.00 0.00 0.00 3.36
1553 1852 3.092301 CCAGATTGTTTTCTCCCCTTCC 58.908 50.000 0.00 0.00 0.00 3.46
1554 1853 4.034285 TCCAGATTGTTTTCTCCCCTTC 57.966 45.455 0.00 0.00 0.00 3.46
1555 1854 4.202716 ACATCCAGATTGTTTTCTCCCCTT 60.203 41.667 0.00 0.00 0.00 3.95
1556 1855 3.334881 ACATCCAGATTGTTTTCTCCCCT 59.665 43.478 0.00 0.00 0.00 4.79
1557 1856 3.701664 ACATCCAGATTGTTTTCTCCCC 58.298 45.455 0.00 0.00 0.00 4.81
1558 1857 4.884164 CCTACATCCAGATTGTTTTCTCCC 59.116 45.833 0.00 0.00 0.00 4.30
1559 1858 4.336713 GCCTACATCCAGATTGTTTTCTCC 59.663 45.833 0.00 0.00 0.00 3.71
1560 1859 4.943705 TGCCTACATCCAGATTGTTTTCTC 59.056 41.667 0.00 0.00 0.00 2.87
1561 1860 4.922206 TGCCTACATCCAGATTGTTTTCT 58.078 39.130 0.00 0.00 0.00 2.52
1562 1861 5.825507 GATGCCTACATCCAGATTGTTTTC 58.174 41.667 0.00 0.00 45.94 2.29
1563 1862 5.841957 GATGCCTACATCCAGATTGTTTT 57.158 39.130 0.00 0.00 45.94 2.43
1575 1874 6.398655 AGATAATGGATTGGATGCCTACAT 57.601 37.500 0.00 0.00 39.98 2.29
1576 1875 5.569428 CGAGATAATGGATTGGATGCCTACA 60.569 44.000 0.00 0.00 0.00 2.74
1577 1876 4.872691 CGAGATAATGGATTGGATGCCTAC 59.127 45.833 0.00 0.00 0.00 3.18
1578 1877 4.623886 GCGAGATAATGGATTGGATGCCTA 60.624 45.833 0.00 0.00 0.00 3.93
1579 1878 3.871463 GCGAGATAATGGATTGGATGCCT 60.871 47.826 0.00 0.00 0.00 4.75
1580 1879 2.421424 GCGAGATAATGGATTGGATGCC 59.579 50.000 0.00 0.00 0.00 4.40
1581 1880 3.126514 CAGCGAGATAATGGATTGGATGC 59.873 47.826 0.00 0.00 0.00 3.91
1582 1881 4.321718 ACAGCGAGATAATGGATTGGATG 58.678 43.478 0.00 0.00 0.00 3.51
1583 1882 4.630644 ACAGCGAGATAATGGATTGGAT 57.369 40.909 0.00 0.00 0.00 3.41
1584 1883 4.141733 TGAACAGCGAGATAATGGATTGGA 60.142 41.667 0.00 0.00 0.00 3.53
1585 1884 4.129380 TGAACAGCGAGATAATGGATTGG 58.871 43.478 0.00 0.00 0.00 3.16
1586 1885 5.936686 ATGAACAGCGAGATAATGGATTG 57.063 39.130 0.00 0.00 0.00 2.67
1587 1886 5.471456 GGAATGAACAGCGAGATAATGGATT 59.529 40.000 0.00 0.00 0.00 3.01
1588 1887 4.999950 GGAATGAACAGCGAGATAATGGAT 59.000 41.667 0.00 0.00 0.00 3.41
1589 1888 4.101585 AGGAATGAACAGCGAGATAATGGA 59.898 41.667 0.00 0.00 0.00 3.41
1590 1889 4.384056 AGGAATGAACAGCGAGATAATGG 58.616 43.478 0.00 0.00 0.00 3.16
1591 1890 5.998454 AAGGAATGAACAGCGAGATAATG 57.002 39.130 0.00 0.00 0.00 1.90
1592 1891 7.055667 TCTAAGGAATGAACAGCGAGATAAT 57.944 36.000 0.00 0.00 0.00 1.28
1593 1892 6.096987 ACTCTAAGGAATGAACAGCGAGATAA 59.903 38.462 0.00 0.00 0.00 1.75
1594 1893 5.594725 ACTCTAAGGAATGAACAGCGAGATA 59.405 40.000 0.00 0.00 0.00 1.98
1595 1894 4.404073 ACTCTAAGGAATGAACAGCGAGAT 59.596 41.667 0.00 0.00 0.00 2.75
1596 1895 3.764434 ACTCTAAGGAATGAACAGCGAGA 59.236 43.478 0.00 0.00 0.00 4.04
1597 1896 4.116747 ACTCTAAGGAATGAACAGCGAG 57.883 45.455 0.00 0.00 0.00 5.03
1598 1897 4.537135 AACTCTAAGGAATGAACAGCGA 57.463 40.909 0.00 0.00 0.00 4.93
1599 1898 5.812642 ACATAACTCTAAGGAATGAACAGCG 59.187 40.000 0.00 0.00 0.00 5.18
1600 1899 7.334421 TGAACATAACTCTAAGGAATGAACAGC 59.666 37.037 0.00 0.00 0.00 4.40
1601 1900 8.777865 TGAACATAACTCTAAGGAATGAACAG 57.222 34.615 0.00 0.00 0.00 3.16
1602 1901 9.739276 ATTGAACATAACTCTAAGGAATGAACA 57.261 29.630 0.00 0.00 0.00 3.18
1603 1902 9.994432 CATTGAACATAACTCTAAGGAATGAAC 57.006 33.333 0.00 0.00 0.00 3.18
1604 1903 8.677300 GCATTGAACATAACTCTAAGGAATGAA 58.323 33.333 0.00 0.00 0.00 2.57
1605 1904 8.049117 AGCATTGAACATAACTCTAAGGAATGA 58.951 33.333 0.00 0.00 0.00 2.57
1606 1905 8.218338 AGCATTGAACATAACTCTAAGGAATG 57.782 34.615 0.00 0.00 0.00 2.67
1607 1906 8.814038 AAGCATTGAACATAACTCTAAGGAAT 57.186 30.769 0.00 0.00 0.00 3.01
1608 1907 8.635765 AAAGCATTGAACATAACTCTAAGGAA 57.364 30.769 0.00 0.00 0.00 3.36
1609 1908 9.383519 CTAAAGCATTGAACATAACTCTAAGGA 57.616 33.333 0.00 0.00 0.00 3.36
1610 1909 8.125448 GCTAAAGCATTGAACATAACTCTAAGG 58.875 37.037 0.00 0.00 41.59 2.69
1611 1910 8.887717 AGCTAAAGCATTGAACATAACTCTAAG 58.112 33.333 4.54 0.00 45.16 2.18
1612 1911 8.792830 AGCTAAAGCATTGAACATAACTCTAA 57.207 30.769 4.54 0.00 45.16 2.10
1613 1912 8.792830 AAGCTAAAGCATTGAACATAACTCTA 57.207 30.769 4.54 0.00 45.16 2.43
1614 1913 7.693969 AAGCTAAAGCATTGAACATAACTCT 57.306 32.000 4.54 0.00 45.16 3.24
1615 1914 8.669243 AGTAAGCTAAAGCATTGAACATAACTC 58.331 33.333 4.54 0.00 45.16 3.01
1616 1915 8.567285 AGTAAGCTAAAGCATTGAACATAACT 57.433 30.769 4.54 0.00 45.16 2.24
1617 1916 8.450964 TGAGTAAGCTAAAGCATTGAACATAAC 58.549 33.333 4.54 0.00 45.16 1.89
1618 1917 8.560355 TGAGTAAGCTAAAGCATTGAACATAA 57.440 30.769 4.54 0.00 45.16 1.90
1619 1918 8.615211 CATGAGTAAGCTAAAGCATTGAACATA 58.385 33.333 4.54 0.00 45.16 2.29
1620 1919 7.478322 CATGAGTAAGCTAAAGCATTGAACAT 58.522 34.615 4.54 0.72 45.16 2.71
1621 1920 6.623549 GCATGAGTAAGCTAAAGCATTGAACA 60.624 38.462 4.54 0.00 45.16 3.18
1622 1921 5.741040 GCATGAGTAAGCTAAAGCATTGAAC 59.259 40.000 4.54 0.00 45.16 3.18
1623 1922 5.447683 CGCATGAGTAAGCTAAAGCATTGAA 60.448 40.000 4.54 0.00 45.16 2.69
1624 1923 4.034394 CGCATGAGTAAGCTAAAGCATTGA 59.966 41.667 4.54 0.00 45.16 2.57
1625 1924 4.034394 TCGCATGAGTAAGCTAAAGCATTG 59.966 41.667 4.54 0.00 45.16 2.82
1626 1925 4.191544 TCGCATGAGTAAGCTAAAGCATT 58.808 39.130 4.54 0.00 45.16 3.56
1627 1926 3.797039 TCGCATGAGTAAGCTAAAGCAT 58.203 40.909 4.54 0.00 45.16 3.79
1628 1927 3.245518 TCGCATGAGTAAGCTAAAGCA 57.754 42.857 4.54 0.00 45.16 3.91
1629 1928 4.600012 TTTCGCATGAGTAAGCTAAAGC 57.400 40.909 0.00 0.00 42.49 3.51
1630 1929 5.427082 CGATTTCGCATGAGTAAGCTAAAG 58.573 41.667 0.00 0.00 30.57 1.85
1631 1930 5.389642 CGATTTCGCATGAGTAAGCTAAA 57.610 39.130 0.00 0.00 31.41 1.85
1646 1945 5.118357 TCCACAAATTTTGATTGCGATTTCG 59.882 36.000 15.81 0.00 43.27 3.46
1647 1946 6.464895 TCCACAAATTTTGATTGCGATTTC 57.535 33.333 15.81 0.00 0.00 2.17
1648 1947 7.041235 ACAATCCACAAATTTTGATTGCGATTT 60.041 29.630 22.58 9.77 44.94 2.17
1649 1948 6.427547 ACAATCCACAAATTTTGATTGCGATT 59.572 30.769 22.58 11.27 44.94 3.34
1650 1949 5.933463 ACAATCCACAAATTTTGATTGCGAT 59.067 32.000 22.58 6.91 44.94 4.58
1651 1950 5.295950 ACAATCCACAAATTTTGATTGCGA 58.704 33.333 22.58 5.19 44.94 5.10
1652 1951 5.594724 ACAATCCACAAATTTTGATTGCG 57.405 34.783 22.58 10.24 44.94 4.85
1653 1952 7.306109 GCAAAACAATCCACAAATTTTGATTGC 60.306 33.333 22.58 17.66 44.94 3.56
1654 1953 7.701078 TGCAAAACAATCCACAAATTTTGATTG 59.299 29.630 21.76 21.76 45.95 2.67
1657 1956 6.596888 TCTGCAAAACAATCCACAAATTTTGA 59.403 30.769 15.81 0.00 40.89 2.69
1658 1957 6.783162 TCTGCAAAACAATCCACAAATTTTG 58.217 32.000 7.59 7.59 41.19 2.44
1663 1963 4.141756 ACCATCTGCAAAACAATCCACAAA 60.142 37.500 0.00 0.00 0.00 2.83
1671 1971 4.099113 TGTGATTCACCATCTGCAAAACAA 59.901 37.500 14.05 0.00 32.73 2.83
1675 1975 4.933505 TTTGTGATTCACCATCTGCAAA 57.066 36.364 14.05 3.70 36.26 3.68
1676 1976 4.811908 CATTTGTGATTCACCATCTGCAA 58.188 39.130 14.05 0.00 32.73 4.08
1708 2008 2.240493 ACTGAAGTTGACGTCCAAGG 57.760 50.000 14.12 0.00 35.03 3.61
1716 2016 6.498304 ACATCATGTGAAAACTGAAGTTGAC 58.502 36.000 0.00 0.00 38.44 3.18
1752 2052 7.936496 TCTTTGTTAAATATCATCAGGCACA 57.064 32.000 0.00 0.00 0.00 4.57
1753 2053 9.807649 AATTCTTTGTTAAATATCATCAGGCAC 57.192 29.630 0.00 0.00 0.00 5.01
1779 2079 1.053424 AGCCACCTACCGTTTTGAGA 58.947 50.000 0.00 0.00 0.00 3.27
1780 2080 1.156736 CAGCCACCTACCGTTTTGAG 58.843 55.000 0.00 0.00 0.00 3.02
1795 2095 1.291132 GATCCGAGTAAGCAACAGCC 58.709 55.000 0.00 0.00 0.00 4.85
1799 2099 3.000322 CGTCAATGATCCGAGTAAGCAAC 60.000 47.826 0.00 0.00 0.00 4.17
1800 2100 3.186909 CGTCAATGATCCGAGTAAGCAA 58.813 45.455 0.00 0.00 0.00 3.91
1807 2107 2.586258 AAGACCGTCAATGATCCGAG 57.414 50.000 0.40 0.00 0.00 4.63
1831 2131 8.657074 ACGATCGAACATTAAAGGAATAATCA 57.343 30.769 24.34 0.00 0.00 2.57
1833 2133 9.760077 AGTACGATCGAACATTAAAGGAATAAT 57.240 29.630 24.34 0.00 0.00 1.28
1844 2145 4.636648 ACTCTCTCAGTACGATCGAACATT 59.363 41.667 24.34 0.39 31.37 2.71
1846 2147 3.597255 ACTCTCTCAGTACGATCGAACA 58.403 45.455 24.34 3.21 31.37 3.18
1847 2148 5.069485 GTACTCTCTCAGTACGATCGAAC 57.931 47.826 24.34 1.28 46.41 3.95
1906 2207 2.704572 AGCAACTATGGACAGTGAAGC 58.295 47.619 0.00 0.00 0.00 3.86
1915 2216 9.638239 GAAAACAAATTCATAAGCAACTATGGA 57.362 29.630 0.00 0.00 31.33 3.41
1916 2217 8.872845 GGAAAACAAATTCATAAGCAACTATGG 58.127 33.333 0.00 0.00 31.33 2.74
1928 2229 7.442062 GTGGTTGATTCTGGAAAACAAATTCAT 59.558 33.333 7.46 0.00 0.00 2.57
2006 2307 6.543831 ACTGTTTGGATAACATGATAAGAGGC 59.456 38.462 0.00 0.00 0.00 4.70
2033 2334 5.393461 GCCCAGAAGGTAATGATTTTCAGTG 60.393 44.000 0.00 0.00 38.26 3.66
2036 2337 4.934356 AGCCCAGAAGGTAATGATTTTCA 58.066 39.130 0.00 0.00 38.26 2.69
2044 2345 6.378280 CACAGAAAATAAGCCCAGAAGGTAAT 59.622 38.462 0.00 0.00 38.26 1.89
2064 2365 5.738619 TTTTCTGTACCTGATAGCACAGA 57.261 39.130 7.06 0.00 44.17 3.41
2065 2366 5.525378 GGATTTTCTGTACCTGATAGCACAG 59.475 44.000 0.00 0.00 39.79 3.66
2066 2367 5.428253 GGATTTTCTGTACCTGATAGCACA 58.572 41.667 0.00 0.00 0.00 4.57
2067 2368 4.816925 GGGATTTTCTGTACCTGATAGCAC 59.183 45.833 0.00 0.00 0.00 4.40
2068 2369 4.473196 TGGGATTTTCTGTACCTGATAGCA 59.527 41.667 0.00 0.00 0.00 3.49
2079 2380 0.598065 GCTTGCGTGGGATTTTCTGT 59.402 50.000 0.00 0.00 0.00 3.41
2099 2400 4.157105 TGAAAATCTTTAAAGGCTACCGGC 59.843 41.667 15.13 0.00 40.90 6.13
2126 2427 4.629200 CCATCTTCTTCAGTAAGCACAGAC 59.371 45.833 0.00 0.00 32.36 3.51
2164 2465 4.759516 TTACCGAGAGAAAATTGCCAAC 57.240 40.909 0.00 0.00 0.00 3.77
2171 2472 7.928706 CAGACCATTCTATTACCGAGAGAAAAT 59.071 37.037 0.00 0.00 33.15 1.82
2175 2476 5.691896 TCAGACCATTCTATTACCGAGAGA 58.308 41.667 0.00 0.00 0.00 3.10
2192 2493 6.765915 AGAGCTGGATTTTATTTTCAGACC 57.234 37.500 0.00 0.00 0.00 3.85
2194 2495 7.599998 GCAAAAGAGCTGGATTTTATTTTCAGA 59.400 33.333 0.00 0.00 0.00 3.27
2238 2539 9.720769 TGTAACAAACAAAATGGAAAGGTAAAA 57.279 25.926 0.00 0.00 34.29 1.52
2255 2556 6.420008 ACTCGTATCTGTGTCTTGTAACAAAC 59.580 38.462 0.00 0.00 0.00 2.93
2285 2586 6.823689 ACAGAATCCGTCATTTTACTGCTAAT 59.176 34.615 0.00 0.00 0.00 1.73
2304 2605 9.784531 TTGATAAGACTTTCTCAAAGACAGAAT 57.215 29.630 9.32 0.00 41.02 2.40
2372 2673 0.107459 GGCCTGCTACCTCCTTTCAG 60.107 60.000 0.00 0.00 0.00 3.02
2388 2689 5.645201 AGATGGATAGGGAAATAAAAGGCC 58.355 41.667 0.00 0.00 0.00 5.19
2476 2777 0.987294 ACTCATGGGTTGACCTCCAG 59.013 55.000 0.00 0.00 41.11 3.86
2477 2778 1.351017 GAACTCATGGGTTGACCTCCA 59.649 52.381 17.62 0.00 41.11 3.86
2482 2783 8.519526 TGTTAAATATTGAACTCATGGGTTGAC 58.480 33.333 17.62 2.56 0.00 3.18
2486 2787 8.906867 CAGATGTTAAATATTGAACTCATGGGT 58.093 33.333 15.37 0.00 0.00 4.51
2551 2852 6.490040 TGATCCATTGAGACATACGATGAGTA 59.510 38.462 0.00 0.00 40.03 2.59
2611 2923 6.043411 AGAGAAGTGCAATCTACGGTTAATC 58.957 40.000 3.40 0.00 0.00 1.75
2641 2953 7.966246 TGCTACAAAGACGAAAAGGTAAATA 57.034 32.000 0.00 0.00 0.00 1.40
2642 2954 6.870971 TGCTACAAAGACGAAAAGGTAAAT 57.129 33.333 0.00 0.00 0.00 1.40
2645 2957 6.870971 AAATGCTACAAAGACGAAAAGGTA 57.129 33.333 0.00 0.00 0.00 3.08
2646 2958 5.767816 AAATGCTACAAAGACGAAAAGGT 57.232 34.783 0.00 0.00 0.00 3.50
2647 2959 6.205784 TCAAAATGCTACAAAGACGAAAAGG 58.794 36.000 0.00 0.00 0.00 3.11
2652 2964 6.734137 ACAATTCAAAATGCTACAAAGACGA 58.266 32.000 0.00 0.00 0.00 4.20
2654 2966 9.243637 TGTAACAATTCAAAATGCTACAAAGAC 57.756 29.630 0.00 0.00 28.28 3.01
2659 2971 6.980593 AGCTGTAACAATTCAAAATGCTACA 58.019 32.000 0.00 0.00 30.08 2.74
2666 2978 6.664515 CGGTCTAAGCTGTAACAATTCAAAA 58.335 36.000 0.00 0.00 0.00 2.44
2670 2982 3.933332 AGCGGTCTAAGCTGTAACAATTC 59.067 43.478 0.00 0.00 44.22 2.17
2704 3019 3.773119 AGTGACCACCGTTAGTTCCATAT 59.227 43.478 0.00 0.00 0.00 1.78
2705 3020 3.167485 AGTGACCACCGTTAGTTCCATA 58.833 45.455 0.00 0.00 0.00 2.74
2706 3021 1.975680 AGTGACCACCGTTAGTTCCAT 59.024 47.619 0.00 0.00 0.00 3.41
2707 3022 1.416243 AGTGACCACCGTTAGTTCCA 58.584 50.000 0.00 0.00 0.00 3.53
2708 3023 2.538512 AAGTGACCACCGTTAGTTCC 57.461 50.000 0.00 0.00 0.00 3.62
2709 3024 2.804527 GGAAAGTGACCACCGTTAGTTC 59.195 50.000 0.00 0.00 0.00 3.01
2718 3033 1.068741 AGTGTCGAGGAAAGTGACCAC 59.931 52.381 0.00 0.00 0.00 4.16
2737 3052 1.347707 TCCCTGTTCAAGTAGCACCAG 59.652 52.381 0.00 0.00 0.00 4.00
2776 3097 5.163733 GGAACTAGTTTTTGGTTGTCACGAA 60.164 40.000 10.02 0.00 0.00 3.85
2909 3230 3.181487 TGGCTGCTTTCTTCACTTTTGAC 60.181 43.478 0.00 0.00 0.00 3.18
2999 3320 6.884295 CCAACCAATTCACATCTAAAGTAGGA 59.116 38.462 0.00 0.00 0.00 2.94
3043 3364 1.527034 GTTCTCCTGCAGCATGTCAA 58.473 50.000 8.66 0.00 39.31 3.18
3046 3367 0.403271 AAGGTTCTCCTGCAGCATGT 59.597 50.000 8.66 0.00 44.35 3.21
3217 3538 4.035102 GTCCCCCACCCTGCAGTC 62.035 72.222 13.81 0.00 0.00 3.51
3244 3565 2.105477 GAGCTTAGGATCAATGGGCAGA 59.895 50.000 0.00 0.00 0.00 4.26
3358 3681 7.328249 GCAATCGGAAATTTTCTATGTTGAACA 59.672 33.333 0.00 0.00 0.00 3.18
3370 3693 4.764823 TCCAGTAGTGCAATCGGAAATTTT 59.235 37.500 0.00 0.00 0.00 1.82
3377 3700 4.662145 GATTTTTCCAGTAGTGCAATCGG 58.338 43.478 0.00 0.00 0.00 4.18
3378 3701 4.142902 ACGATTTTTCCAGTAGTGCAATCG 60.143 41.667 19.92 19.92 44.40 3.34
3413 3736 0.233848 GCAAACAACGGTGTACTCGG 59.766 55.000 6.49 7.39 36.80 4.63
3415 3738 2.206750 TCAGCAAACAACGGTGTACTC 58.793 47.619 6.49 0.00 36.80 2.59
3416 3739 2.210116 CTCAGCAAACAACGGTGTACT 58.790 47.619 6.49 1.51 36.80 2.73
3417 3740 1.937899 ACTCAGCAAACAACGGTGTAC 59.062 47.619 6.49 0.00 36.80 2.90
3418 3741 2.319136 ACTCAGCAAACAACGGTGTA 57.681 45.000 6.49 0.00 36.80 2.90
3419 3742 1.937899 GTACTCAGCAAACAACGGTGT 59.062 47.619 0.00 0.00 40.75 4.16
3420 3743 1.263217 GGTACTCAGCAAACAACGGTG 59.737 52.381 0.00 0.00 0.00 4.94
3421 3744 1.134340 TGGTACTCAGCAAACAACGGT 60.134 47.619 0.00 0.00 0.00 4.83
3422 3745 1.263217 GTGGTACTCAGCAAACAACGG 59.737 52.381 0.00 0.00 33.05 4.44
3423 3746 1.937223 TGTGGTACTCAGCAAACAACG 59.063 47.619 0.00 0.00 33.05 4.10
3424 3747 3.127895 TGTTGTGGTACTCAGCAAACAAC 59.872 43.478 9.02 9.02 39.83 3.32
3425 3748 3.127895 GTGTTGTGGTACTCAGCAAACAA 59.872 43.478 8.85 0.00 43.80 2.83
3426 3749 2.680841 GTGTTGTGGTACTCAGCAAACA 59.319 45.455 8.85 6.47 43.80 2.83
3427 3750 2.286184 CGTGTTGTGGTACTCAGCAAAC 60.286 50.000 8.85 4.63 43.80 2.93
3433 3756 1.274167 GATCCCGTGTTGTGGTACTCA 59.726 52.381 0.00 0.00 0.00 3.41
3442 3765 0.601576 TTCACCGTGATCCCGTGTTG 60.602 55.000 1.09 0.00 0.00 3.33
3459 3782 3.485546 CGTACTCAGCTTACGAGTCCTTC 60.486 52.174 10.27 0.70 44.11 3.46
3482 3805 1.374190 CCTGCTGTCTGCCAAGAGT 59.626 57.895 0.00 0.00 42.00 3.24
3487 3810 4.648626 GTGCCCTGCTGTCTGCCA 62.649 66.667 0.00 0.00 42.00 4.92
3491 3814 1.257750 TATGTCGTGCCCTGCTGTCT 61.258 55.000 0.00 0.00 0.00 3.41
3504 3827 2.408050 GGCAGCTTCTACCATATGTCG 58.592 52.381 1.24 0.00 0.00 4.35
3506 3829 2.039418 TCGGCAGCTTCTACCATATGT 58.961 47.619 1.24 0.00 0.00 2.29
3518 3841 2.298158 CTATCGGGTGTTCGGCAGCT 62.298 60.000 9.25 0.00 44.46 4.24
3535 3858 3.512329 TCATGTTTGCCGAGTACTTCCTA 59.488 43.478 0.00 0.00 0.00 2.94
3570 3893 1.340017 ACTAAGGGTACACGCTCCGTA 60.340 52.381 0.00 0.00 38.32 4.02
3590 3946 2.235891 TGCCAAGAGTGTAGTTCTCGA 58.764 47.619 0.00 0.00 37.07 4.04
3592 3948 4.381411 AGTTTGCCAAGAGTGTAGTTCTC 58.619 43.478 0.00 0.00 0.00 2.87
3603 3959 1.417517 TCAGCAGAGAGTTTGCCAAGA 59.582 47.619 0.00 0.00 42.48 3.02
3604 3960 1.805345 CTCAGCAGAGAGTTTGCCAAG 59.195 52.381 0.00 0.00 44.98 3.61
3605 3961 1.141657 ACTCAGCAGAGAGTTTGCCAA 59.858 47.619 13.73 0.00 46.26 4.52
3646 4002 2.222027 ACTTTCCTGAGTGCCGAAAAG 58.778 47.619 0.00 0.00 0.00 2.27
3647 4003 2.341846 ACTTTCCTGAGTGCCGAAAA 57.658 45.000 0.00 0.00 0.00 2.29
3648 4004 1.946768 CAACTTTCCTGAGTGCCGAAA 59.053 47.619 0.00 0.00 0.00 3.46
3649 4005 1.593196 CAACTTTCCTGAGTGCCGAA 58.407 50.000 0.00 0.00 0.00 4.30
3650 4006 0.250295 CCAACTTTCCTGAGTGCCGA 60.250 55.000 0.00 0.00 0.00 5.54
3651 4007 0.250295 TCCAACTTTCCTGAGTGCCG 60.250 55.000 0.00 0.00 0.00 5.69
3652 4008 1.609072 GTTCCAACTTTCCTGAGTGCC 59.391 52.381 0.00 0.00 0.00 5.01
3653 4009 2.576615 AGTTCCAACTTTCCTGAGTGC 58.423 47.619 0.00 0.00 35.21 4.40
3654 4010 4.511826 GTGTAGTTCCAACTTTCCTGAGTG 59.488 45.833 0.00 0.00 40.37 3.51
3655 4011 4.409247 AGTGTAGTTCCAACTTTCCTGAGT 59.591 41.667 0.00 0.00 40.37 3.41
3656 4012 4.962155 AGTGTAGTTCCAACTTTCCTGAG 58.038 43.478 0.00 0.00 40.37 3.35
3657 4013 4.654262 AGAGTGTAGTTCCAACTTTCCTGA 59.346 41.667 0.00 0.00 40.37 3.86
3658 4014 4.962155 AGAGTGTAGTTCCAACTTTCCTG 58.038 43.478 0.00 0.00 40.37 3.86
3659 4015 5.368989 CAAGAGTGTAGTTCCAACTTTCCT 58.631 41.667 0.00 0.00 40.37 3.36
3660 4016 4.515567 CCAAGAGTGTAGTTCCAACTTTCC 59.484 45.833 0.00 0.00 40.37 3.13
3661 4017 4.023963 GCCAAGAGTGTAGTTCCAACTTTC 60.024 45.833 0.00 0.00 40.37 2.62
3662 4018 3.883489 GCCAAGAGTGTAGTTCCAACTTT 59.117 43.478 0.00 0.00 40.37 2.66
3663 4019 3.118038 TGCCAAGAGTGTAGTTCCAACTT 60.118 43.478 0.00 0.00 40.37 2.66
3664 4020 2.438021 TGCCAAGAGTGTAGTTCCAACT 59.562 45.455 0.00 0.00 42.91 3.16
3665 4021 2.846193 TGCCAAGAGTGTAGTTCCAAC 58.154 47.619 0.00 0.00 0.00 3.77
3666 4022 3.569194 TTGCCAAGAGTGTAGTTCCAA 57.431 42.857 0.00 0.00 0.00 3.53
3667 4023 3.118038 AGTTTGCCAAGAGTGTAGTTCCA 60.118 43.478 0.00 0.00 0.00 3.53
3668 4024 3.477530 AGTTTGCCAAGAGTGTAGTTCC 58.522 45.455 0.00 0.00 0.00 3.62
3669 4025 4.381411 AGAGTTTGCCAAGAGTGTAGTTC 58.619 43.478 0.00 0.00 0.00 3.01
3670 4026 4.101741 AGAGAGTTTGCCAAGAGTGTAGTT 59.898 41.667 0.00 0.00 0.00 2.24
3671 4027 3.643792 AGAGAGTTTGCCAAGAGTGTAGT 59.356 43.478 0.00 0.00 0.00 2.73
3672 4028 3.993081 CAGAGAGTTTGCCAAGAGTGTAG 59.007 47.826 0.00 0.00 0.00 2.74
3673 4029 3.803715 GCAGAGAGTTTGCCAAGAGTGTA 60.804 47.826 0.00 0.00 35.54 2.90
3674 4030 2.843701 CAGAGAGTTTGCCAAGAGTGT 58.156 47.619 0.00 0.00 0.00 3.55
3675 4031 1.534595 GCAGAGAGTTTGCCAAGAGTG 59.465 52.381 0.00 0.00 35.54 3.51
3676 4032 1.419387 AGCAGAGAGTTTGCCAAGAGT 59.581 47.619 0.00 0.00 42.48 3.24
3677 4033 1.805345 CAGCAGAGAGTTTGCCAAGAG 59.195 52.381 0.00 0.00 42.48 2.85
3678 4034 1.417517 TCAGCAGAGAGTTTGCCAAGA 59.582 47.619 0.00 0.00 42.48 3.02
3679 4035 1.805345 CTCAGCAGAGAGTTTGCCAAG 59.195 52.381 0.00 0.00 44.98 3.61
3680 4036 1.141657 ACTCAGCAGAGAGTTTGCCAA 59.858 47.619 13.73 0.00 46.26 4.52
3681 4037 0.761187 ACTCAGCAGAGAGTTTGCCA 59.239 50.000 13.73 0.00 46.26 4.92
3682 4038 1.155042 CACTCAGCAGAGAGTTTGCC 58.845 55.000 13.73 0.00 46.26 4.52
3683 4039 1.876322 ACACTCAGCAGAGAGTTTGC 58.124 50.000 13.73 0.00 46.26 3.68
3684 4040 5.991328 TTTTACACTCAGCAGAGAGTTTG 57.009 39.130 13.73 3.07 46.26 2.93
3685 4041 5.471456 CCATTTTACACTCAGCAGAGAGTTT 59.529 40.000 13.73 5.59 46.26 2.66
3686 4042 4.999950 CCATTTTACACTCAGCAGAGAGTT 59.000 41.667 13.73 0.00 46.26 3.01
3688 4044 3.373439 GCCATTTTACACTCAGCAGAGAG 59.627 47.826 13.73 7.61 44.98 3.20
3689 4045 3.008375 AGCCATTTTACACTCAGCAGAGA 59.992 43.478 13.73 0.00 44.98 3.10
3691 4047 3.423539 AGCCATTTTACACTCAGCAGA 57.576 42.857 0.00 0.00 0.00 4.26
3692 4048 4.479619 GAAAGCCATTTTACACTCAGCAG 58.520 43.478 0.00 0.00 0.00 4.24
3693 4049 3.058293 CGAAAGCCATTTTACACTCAGCA 60.058 43.478 0.00 0.00 0.00 4.41
3694 4050 3.492313 CGAAAGCCATTTTACACTCAGC 58.508 45.455 0.00 0.00 0.00 4.26
3717 4073 0.512952 CCTGAGTGCCGAAAAACTCG 59.487 55.000 0.00 0.00 44.75 4.18
3718 4074 1.878953 TCCTGAGTGCCGAAAAACTC 58.121 50.000 0.00 0.00 42.61 3.01
3719 4075 2.341846 TTCCTGAGTGCCGAAAAACT 57.658 45.000 0.00 0.00 0.00 2.66
3720 4076 2.357952 ACTTTCCTGAGTGCCGAAAAAC 59.642 45.455 0.00 0.00 0.00 2.43
3770 4126 1.615883 CCTCCCCACGTCATATCTCAG 59.384 57.143 0.00 0.00 0.00 3.35
3807 4163 6.064060 TCAATCACATCATATTTCCCCTCAC 58.936 40.000 0.00 0.00 0.00 3.51
3848 4204 8.407457 TCATCAATAGAATCAAACTCACGTAC 57.593 34.615 0.00 0.00 0.00 3.67
3871 4255 9.932207 AGCAATCAACAGAAATCAAATAAATCA 57.068 25.926 0.00 0.00 0.00 2.57
3926 4310 1.075374 CAAACCAATCCCCACCTCTCA 59.925 52.381 0.00 0.00 0.00 3.27
3983 4369 2.747686 GCCCACCTCGTTTCCTGA 59.252 61.111 0.00 0.00 0.00 3.86
3996 4382 2.905935 TTTCCCAAAACGACCGCCCA 62.906 55.000 0.00 0.00 0.00 5.36
4000 4386 3.423996 TTCTTTTTCCCAAAACGACCG 57.576 42.857 0.00 0.00 29.71 4.79
4018 4410 6.813152 CCAAACCATGTGATAACCTCATTTTC 59.187 38.462 0.00 0.00 35.97 2.29
4062 4472 0.035439 TCGCTTTCACCCCTTCCATC 60.035 55.000 0.00 0.00 0.00 3.51
4080 4490 5.262588 AGTTTGTTGGTTTGACTTCCATC 57.737 39.130 0.00 0.00 33.50 3.51
4122 4532 6.668718 ACAGACTAGCATCCATGATCATCTAT 59.331 38.462 4.86 0.00 0.00 1.98
4123 4533 6.015282 ACAGACTAGCATCCATGATCATCTA 58.985 40.000 4.86 3.21 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.