Multiple sequence alignment - TraesCS5B01G281300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G281300 chr5B 100.000 2216 0 0 1 2216 466643560 466645775 0.000000e+00 4093.0
1 TraesCS5B01G281300 chr5D 89.033 693 56 13 1 683 388043043 388043725 0.000000e+00 841.0
2 TraesCS5B01G281300 chr5D 94.336 459 19 3 782 1240 388043722 388044173 0.000000e+00 697.0
3 TraesCS5B01G281300 chr5D 92.135 267 17 4 1584 1849 388044170 388044433 7.470000e-100 374.0
4 TraesCS5B01G281300 chr5D 90.000 170 5 4 1833 1992 388044713 388044880 2.230000e-50 209.0
5 TraesCS5B01G281300 chr5D 90.441 136 9 2 2005 2140 388045762 388045893 2.260000e-40 176.0
6 TraesCS5B01G281300 chr5D 93.651 63 4 0 723 785 21508730 21508792 6.510000e-16 95.3
7 TraesCS5B01G281300 chr5D 93.651 63 4 0 723 785 310999857 310999919 6.510000e-16 95.3
8 TraesCS5B01G281300 chr5A 87.966 698 61 13 1 683 491214190 491214879 0.000000e+00 802.0
9 TraesCS5B01G281300 chr5A 94.498 418 23 0 823 1240 491214900 491215317 0.000000e+00 645.0
10 TraesCS5B01G281300 chr5A 92.481 266 17 3 1584 1849 491215314 491215576 5.780000e-101 377.0
11 TraesCS5B01G281300 chr5A 90.798 163 10 4 1833 1992 491215852 491216012 1.720000e-51 213.0
12 TraesCS5B01G281300 chr5A 93.671 79 2 2 2062 2140 491231005 491231080 5.000000e-22 115.0
13 TraesCS5B01G281300 chr3A 96.875 352 11 0 1239 1590 468165867 468166218 6.820000e-165 590.0
14 TraesCS5B01G281300 chr7A 96.866 351 11 0 1237 1587 704628523 704628873 2.450000e-164 588.0
15 TraesCS5B01G281300 chr7B 96.857 350 11 0 1237 1586 443133395 443133744 8.820000e-164 586.0
16 TraesCS5B01G281300 chr7B 93.651 63 4 0 723 785 687747435 687747373 6.510000e-16 95.3
17 TraesCS5B01G281300 chr3B 96.848 349 11 0 1239 1587 678450157 678449809 3.170000e-163 584.0
18 TraesCS5B01G281300 chr3B 96.275 349 13 0 1239 1587 817575030 817574682 6.860000e-160 573.0
19 TraesCS5B01G281300 chr3B 89.333 75 6 2 711 785 195623073 195623145 2.340000e-15 93.5
20 TraesCS5B01G281300 chr1A 95.580 362 16 0 1237 1598 301203558 301203197 4.100000e-162 580.0
21 TraesCS5B01G281300 chr4A 95.775 355 14 1 1233 1586 724618503 724618857 2.470000e-159 571.0
22 TraesCS5B01G281300 chr4A 80.362 387 64 8 153 531 595400540 595400158 1.300000e-72 283.0
23 TraesCS5B01G281300 chr4A 93.651 63 4 0 723 785 166716344 166716406 6.510000e-16 95.3
24 TraesCS5B01G281300 chr2B 95.763 354 15 0 1231 1584 64100497 64100850 2.470000e-159 571.0
25 TraesCS5B01G281300 chr1B 95.278 360 13 4 1233 1590 619093196 619093553 3.190000e-158 568.0
26 TraesCS5B01G281300 chr1B 93.651 63 4 0 723 785 574730054 574729992 6.510000e-16 95.3
27 TraesCS5B01G281300 chr6D 79.257 323 58 8 146 465 106699854 106699538 1.330000e-52 217.0
28 TraesCS5B01G281300 chr7D 82.353 136 19 4 147 281 420427344 420427213 1.800000e-21 113.0
29 TraesCS5B01G281300 chr7D 93.651 63 4 0 723 785 427585747 427585809 6.510000e-16 95.3
30 TraesCS5B01G281300 chr4D 93.651 63 4 0 723 785 226974541 226974479 6.510000e-16 95.3
31 TraesCS5B01G281300 chr1D 81.132 106 16 4 679 783 17967446 17967344 5.070000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G281300 chr5B 466643560 466645775 2215 False 4093.00 4093 100.00000 1 2216 1 chr5B.!!$F1 2215
1 TraesCS5B01G281300 chr5D 388043043 388045893 2850 False 459.40 841 91.18900 1 2140 5 chr5D.!!$F3 2139
2 TraesCS5B01G281300 chr5A 491214190 491216012 1822 False 509.25 802 91.43575 1 1992 4 chr5A.!!$F2 1991

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
671 683 0.249238 AACTGATCCAGCTCGCGATC 60.249 55.0 10.36 5.22 34.37 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1509 1521 0.325933 TGCTAGCCTCACACATGCTT 59.674 50.0 13.29 0.0 36.57 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 159 8.033038 TCATATACTCATATGCGGGAAAAGTAC 58.967 37.037 0.00 0.00 42.57 2.73
159 162 4.196193 CTCATATGCGGGAAAAGTACCAA 58.804 43.478 0.00 0.00 0.00 3.67
167 171 4.571919 CGGGAAAAGTACCAAGTGATACA 58.428 43.478 0.00 0.00 0.00 2.29
203 207 5.688807 CTCCCATGATACCAACTTTGAGAT 58.311 41.667 0.00 0.00 0.00 2.75
204 208 6.688922 GCTCCCATGATACCAACTTTGAGATA 60.689 42.308 0.00 0.00 0.00 1.98
330 334 7.678194 TTAAGAAACAAAAGCGACAAATCTG 57.322 32.000 0.00 0.00 0.00 2.90
388 392 6.990341 TGACACTGTTCATATCTGGATTTG 57.010 37.500 0.00 0.00 0.00 2.32
431 435 9.757227 TTGTAAATTTCGATTTTCAACCTGAAT 57.243 25.926 0.00 0.00 36.11 2.57
455 459 5.673337 TTTCAGCAGTTGTAGACACATTC 57.327 39.130 0.00 0.00 33.76 2.67
457 461 3.324846 TCAGCAGTTGTAGACACATTCCT 59.675 43.478 0.00 0.00 33.76 3.36
477 481 8.550376 CATTCCTTGTGAACCTTAACATTTTTG 58.450 33.333 0.00 0.00 35.31 2.44
481 485 7.763985 CCTTGTGAACCTTAACATTTTTGAAGT 59.236 33.333 0.00 0.00 0.00 3.01
578 589 0.717784 CCATCATATGCGTGCTAGCG 59.282 55.000 10.77 0.00 40.67 4.26
668 680 1.153765 TCAACTGATCCAGCTCGCG 60.154 57.895 0.00 0.00 34.37 5.87
669 681 1.153765 CAACTGATCCAGCTCGCGA 60.154 57.895 9.26 9.26 34.37 5.87
670 682 0.529337 CAACTGATCCAGCTCGCGAT 60.529 55.000 10.36 0.00 34.37 4.58
671 683 0.249238 AACTGATCCAGCTCGCGATC 60.249 55.000 10.36 5.22 34.37 3.69
672 684 1.361632 CTGATCCAGCTCGCGATCA 59.638 57.895 10.36 8.61 41.94 2.92
673 685 1.361632 TGATCCAGCTCGCGATCAG 59.638 57.895 10.36 1.31 39.89 2.90
674 686 1.361993 GATCCAGCTCGCGATCAGT 59.638 57.895 10.36 0.00 35.88 3.41
679 691 1.469940 CCAGCTCGCGATCAGTTTAGT 60.470 52.381 10.36 0.00 0.00 2.24
680 692 2.223502 CCAGCTCGCGATCAGTTTAGTA 60.224 50.000 10.36 0.00 0.00 1.82
681 693 2.784380 CAGCTCGCGATCAGTTTAGTAC 59.216 50.000 10.36 0.00 0.00 2.73
682 694 2.683867 AGCTCGCGATCAGTTTAGTACT 59.316 45.455 10.36 0.00 37.68 2.73
683 695 3.037324 GCTCGCGATCAGTTTAGTACTC 58.963 50.000 10.36 0.00 33.85 2.59
684 696 3.619729 CTCGCGATCAGTTTAGTACTCC 58.380 50.000 10.36 0.00 33.85 3.85
685 697 2.357009 TCGCGATCAGTTTAGTACTCCC 59.643 50.000 3.71 0.00 33.85 4.30
686 698 2.358267 CGCGATCAGTTTAGTACTCCCT 59.642 50.000 0.00 0.00 33.85 4.20
687 699 3.548415 CGCGATCAGTTTAGTACTCCCTC 60.548 52.174 0.00 0.00 33.85 4.30
688 700 3.243468 GCGATCAGTTTAGTACTCCCTCC 60.243 52.174 0.00 0.00 33.85 4.30
689 701 3.003482 CGATCAGTTTAGTACTCCCTCCG 59.997 52.174 0.00 0.00 33.85 4.63
690 702 3.446442 TCAGTTTAGTACTCCCTCCGT 57.554 47.619 0.00 0.00 33.85 4.69
691 703 3.771216 TCAGTTTAGTACTCCCTCCGTT 58.229 45.455 0.00 0.00 33.85 4.44
692 704 4.154942 TCAGTTTAGTACTCCCTCCGTTT 58.845 43.478 0.00 0.00 33.85 3.60
693 705 4.219288 TCAGTTTAGTACTCCCTCCGTTTC 59.781 45.833 0.00 0.00 33.85 2.78
694 706 4.021719 CAGTTTAGTACTCCCTCCGTTTCA 60.022 45.833 0.00 0.00 33.85 2.69
695 707 4.590222 AGTTTAGTACTCCCTCCGTTTCAA 59.410 41.667 0.00 0.00 28.23 2.69
696 708 5.070847 AGTTTAGTACTCCCTCCGTTTCAAA 59.929 40.000 0.00 0.00 28.23 2.69
697 709 5.549742 TTAGTACTCCCTCCGTTTCAAAA 57.450 39.130 0.00 0.00 0.00 2.44
698 710 4.426736 AGTACTCCCTCCGTTTCAAAAA 57.573 40.909 0.00 0.00 0.00 1.94
727 739 7.341445 GTCTTGGATATCTAGACAAGTGACT 57.659 40.000 22.61 0.00 44.11 3.41
728 740 7.777095 GTCTTGGATATCTAGACAAGTGACTT 58.223 38.462 22.61 0.00 44.11 3.01
729 741 7.704472 GTCTTGGATATCTAGACAAGTGACTTG 59.296 40.741 22.73 22.73 44.11 3.16
730 742 7.615757 TCTTGGATATCTAGACAAGTGACTTGA 59.384 37.037 30.03 9.15 43.42 3.02
731 743 7.904558 TGGATATCTAGACAAGTGACTTGAT 57.095 36.000 30.03 19.62 43.42 2.57
732 744 8.996651 TGGATATCTAGACAAGTGACTTGATA 57.003 34.615 30.03 19.68 43.42 2.15
733 745 8.851145 TGGATATCTAGACAAGTGACTTGATAC 58.149 37.037 30.03 19.25 43.42 2.24
734 746 8.851145 GGATATCTAGACAAGTGACTTGATACA 58.149 37.037 30.03 11.44 43.42 2.29
735 747 9.672086 GATATCTAGACAAGTGACTTGATACAC 57.328 37.037 30.03 15.02 43.42 2.90
736 748 6.268825 TCTAGACAAGTGACTTGATACACC 57.731 41.667 30.03 11.88 43.42 4.16
737 749 4.273148 AGACAAGTGACTTGATACACCC 57.727 45.455 30.03 10.38 43.42 4.61
738 750 2.993899 GACAAGTGACTTGATACACCCG 59.006 50.000 30.03 2.21 43.42 5.28
739 751 2.367567 ACAAGTGACTTGATACACCCGT 59.632 45.455 30.03 2.94 43.42 5.28
740 752 3.575256 ACAAGTGACTTGATACACCCGTA 59.425 43.478 30.03 0.00 43.42 4.02
741 753 4.222145 ACAAGTGACTTGATACACCCGTAT 59.778 41.667 30.03 1.66 43.42 3.06
757 769 8.701908 ACACCCGTATCTAGACAAATATAAGA 57.298 34.615 0.00 0.00 0.00 2.10
758 770 8.574737 ACACCCGTATCTAGACAAATATAAGAC 58.425 37.037 0.00 0.00 0.00 3.01
759 771 8.573885 CACCCGTATCTAGACAAATATAAGACA 58.426 37.037 0.00 0.00 0.00 3.41
760 772 9.139734 ACCCGTATCTAGACAAATATAAGACAA 57.860 33.333 0.00 0.00 0.00 3.18
761 773 9.627395 CCCGTATCTAGACAAATATAAGACAAG 57.373 37.037 0.00 0.00 0.00 3.16
773 785 9.746711 CAAATATAAGACAAGAAGTTTGAGACG 57.253 33.333 0.00 0.00 0.00 4.18
774 786 8.480643 AATATAAGACAAGAAGTTTGAGACGG 57.519 34.615 0.00 0.00 0.00 4.79
775 787 4.402056 AAGACAAGAAGTTTGAGACGGA 57.598 40.909 0.00 0.00 0.00 4.69
776 788 3.983741 AGACAAGAAGTTTGAGACGGAG 58.016 45.455 0.00 0.00 0.00 4.63
777 789 3.060602 GACAAGAAGTTTGAGACGGAGG 58.939 50.000 0.00 0.00 0.00 4.30
778 790 2.224305 ACAAGAAGTTTGAGACGGAGGG 60.224 50.000 0.00 0.00 0.00 4.30
779 791 2.011122 AGAAGTTTGAGACGGAGGGA 57.989 50.000 0.00 0.00 0.00 4.20
780 792 2.326428 AGAAGTTTGAGACGGAGGGAA 58.674 47.619 0.00 0.00 0.00 3.97
786 798 5.021458 AGTTTGAGACGGAGGGAATACTAA 58.979 41.667 0.00 0.00 0.00 2.24
799 811 7.147880 GGAGGGAATACTAACATCGCATATACT 60.148 40.741 0.00 0.00 0.00 2.12
801 813 8.684520 AGGGAATACTAACATCGCATATACTAC 58.315 37.037 0.00 0.00 0.00 2.73
802 814 8.684520 GGGAATACTAACATCGCATATACTACT 58.315 37.037 0.00 0.00 0.00 2.57
803 815 9.719279 GGAATACTAACATCGCATATACTACTC 57.281 37.037 0.00 0.00 0.00 2.59
804 816 9.719279 GAATACTAACATCGCATATACTACTCC 57.281 37.037 0.00 0.00 0.00 3.85
805 817 8.803397 ATACTAACATCGCATATACTACTCCA 57.197 34.615 0.00 0.00 0.00 3.86
806 818 7.147143 ACTAACATCGCATATACTACTCCAG 57.853 40.000 0.00 0.00 0.00 3.86
807 819 6.715718 ACTAACATCGCATATACTACTCCAGT 59.284 38.462 0.00 0.00 41.62 4.00
810 822 6.002082 ACATCGCATATACTACTCCAGTGTA 58.998 40.000 0.00 0.00 38.24 2.90
814 826 8.803397 TCGCATATACTACTCCAGTGTATATT 57.197 34.615 13.53 4.27 38.97 1.28
868 880 3.428725 GGGATCGATCACATAGCTAGCTG 60.429 52.174 27.68 14.85 0.00 4.24
907 919 1.031235 TGGGCAAACACATCACACAG 58.969 50.000 0.00 0.00 0.00 3.66
963 975 2.092968 TGCTGGGGTTAGTGTGATCATC 60.093 50.000 0.00 0.00 0.00 2.92
1020 1032 0.323451 TGAGCTGCTCGGAGAAGGTA 60.323 55.000 23.35 4.32 34.09 3.08
1131 1143 2.827642 ATCGTCGTCCTCCCCGTC 60.828 66.667 0.00 0.00 0.00 4.79
1167 1179 3.588336 GACTACAGGTCCGAGCGT 58.412 61.111 0.00 0.00 38.93 5.07
1236 1248 3.390639 AGCTAAGCTATCTGCCTGAACAT 59.609 43.478 0.00 0.00 44.23 2.71
1237 1249 4.590647 AGCTAAGCTATCTGCCTGAACATA 59.409 41.667 0.00 0.00 44.23 2.29
1238 1250 5.070981 AGCTAAGCTATCTGCCTGAACATAA 59.929 40.000 0.00 0.00 44.23 1.90
1239 1251 5.407995 GCTAAGCTATCTGCCTGAACATAAG 59.592 44.000 0.00 0.00 44.23 1.73
1240 1252 4.348863 AGCTATCTGCCTGAACATAAGG 57.651 45.455 0.00 0.00 44.23 2.69
1241 1253 3.713764 AGCTATCTGCCTGAACATAAGGT 59.286 43.478 0.00 0.00 44.23 3.50
1242 1254 4.061596 GCTATCTGCCTGAACATAAGGTC 58.938 47.826 0.00 0.00 37.13 3.85
1243 1255 4.443457 GCTATCTGCCTGAACATAAGGTCA 60.443 45.833 0.00 0.00 37.13 4.02
1244 1256 4.785346 ATCTGCCTGAACATAAGGTCAT 57.215 40.909 0.00 0.00 37.13 3.06
1245 1257 3.877559 TCTGCCTGAACATAAGGTCATG 58.122 45.455 0.00 0.00 37.13 3.07
1246 1258 2.357009 CTGCCTGAACATAAGGTCATGC 59.643 50.000 6.35 6.35 37.13 4.06
1247 1259 2.025981 TGCCTGAACATAAGGTCATGCT 60.026 45.455 13.23 0.00 37.13 3.79
1248 1260 3.019564 GCCTGAACATAAGGTCATGCTT 58.980 45.455 6.08 0.00 37.13 3.91
1249 1261 3.181493 GCCTGAACATAAGGTCATGCTTG 60.181 47.826 6.08 0.00 37.13 4.01
1250 1262 3.379372 CCTGAACATAAGGTCATGCTTGG 59.621 47.826 0.00 0.00 0.00 3.61
1251 1263 4.264253 CTGAACATAAGGTCATGCTTGGA 58.736 43.478 0.00 0.00 0.00 3.53
1252 1264 4.858850 TGAACATAAGGTCATGCTTGGAT 58.141 39.130 0.00 0.00 0.00 3.41
1253 1265 4.883585 TGAACATAAGGTCATGCTTGGATC 59.116 41.667 0.00 0.00 0.00 3.36
1254 1266 3.825328 ACATAAGGTCATGCTTGGATCC 58.175 45.455 4.20 4.20 0.00 3.36
1255 1267 3.202818 ACATAAGGTCATGCTTGGATCCA 59.797 43.478 11.44 11.44 0.00 3.41
1256 1268 2.905415 AAGGTCATGCTTGGATCCAA 57.095 45.000 25.53 25.53 0.00 3.53
1270 1282 7.573968 CTTGGATCCAAGGGACTATTTTTAG 57.426 40.000 37.26 14.87 46.88 1.85
1271 1283 6.652205 TGGATCCAAGGGACTATTTTTAGT 57.348 37.500 13.46 0.00 38.49 2.24
1272 1284 6.659824 TGGATCCAAGGGACTATTTTTAGTC 58.340 40.000 13.46 4.87 44.23 2.59
1273 1285 6.447084 TGGATCCAAGGGACTATTTTTAGTCT 59.553 38.462 13.46 0.00 44.35 3.24
1274 1286 6.768381 GGATCCAAGGGACTATTTTTAGTCTG 59.232 42.308 6.95 4.29 44.35 3.51
1275 1287 6.945636 TCCAAGGGACTATTTTTAGTCTGA 57.054 37.500 11.69 1.60 44.35 3.27
1276 1288 6.708285 TCCAAGGGACTATTTTTAGTCTGAC 58.292 40.000 11.69 0.00 44.35 3.51
1277 1289 6.500751 TCCAAGGGACTATTTTTAGTCTGACT 59.499 38.462 15.57 15.57 44.35 3.41
1278 1290 7.676893 TCCAAGGGACTATTTTTAGTCTGACTA 59.323 37.037 13.34 13.34 44.35 2.59
1279 1291 8.319146 CCAAGGGACTATTTTTAGTCTGACTAA 58.681 37.037 22.80 22.80 44.35 2.24
1280 1292 9.720769 CAAGGGACTATTTTTAGTCTGACTAAA 57.279 33.333 29.65 29.65 42.90 1.85
1298 1310 9.849166 CTGACTAAAACTAGTCTCTTTTAGAGG 57.151 37.037 22.75 12.64 44.99 3.69
1299 1311 8.305317 TGACTAAAACTAGTCTCTTTTAGAGGC 58.695 37.037 22.75 14.89 46.94 4.70
1309 1321 7.964604 GTCTCTTTTAGAGGCTAAAGTTTCA 57.035 36.000 7.84 0.00 43.38 2.69
1310 1322 8.379457 GTCTCTTTTAGAGGCTAAAGTTTCAA 57.621 34.615 7.84 0.00 43.38 2.69
1311 1323 9.004717 GTCTCTTTTAGAGGCTAAAGTTTCAAT 57.995 33.333 7.84 0.00 43.38 2.57
1312 1324 9.220767 TCTCTTTTAGAGGCTAAAGTTTCAATC 57.779 33.333 7.84 0.00 42.54 2.67
1313 1325 8.918202 TCTTTTAGAGGCTAAAGTTTCAATCA 57.082 30.769 7.84 0.00 33.97 2.57
1314 1326 8.784043 TCTTTTAGAGGCTAAAGTTTCAATCAC 58.216 33.333 7.84 0.00 33.97 3.06
1315 1327 7.448748 TTTAGAGGCTAAAGTTTCAATCACC 57.551 36.000 0.00 0.00 0.00 4.02
1316 1328 4.336280 AGAGGCTAAAGTTTCAATCACCC 58.664 43.478 0.00 0.00 0.00 4.61
1317 1329 3.431415 AGGCTAAAGTTTCAATCACCCC 58.569 45.455 0.00 0.00 0.00 4.95
1318 1330 3.076032 AGGCTAAAGTTTCAATCACCCCT 59.924 43.478 0.00 0.00 0.00 4.79
1319 1331 3.193479 GGCTAAAGTTTCAATCACCCCTG 59.807 47.826 0.00 0.00 0.00 4.45
1320 1332 4.079253 GCTAAAGTTTCAATCACCCCTGA 58.921 43.478 0.00 0.00 0.00 3.86
1321 1333 4.082733 GCTAAAGTTTCAATCACCCCTGAC 60.083 45.833 0.00 0.00 0.00 3.51
1322 1334 3.884037 AAGTTTCAATCACCCCTGACT 57.116 42.857 0.00 0.00 0.00 3.41
1323 1335 4.993705 AAGTTTCAATCACCCCTGACTA 57.006 40.909 0.00 0.00 0.00 2.59
1324 1336 4.993705 AGTTTCAATCACCCCTGACTAA 57.006 40.909 0.00 0.00 0.00 2.24
1325 1337 5.319043 AGTTTCAATCACCCCTGACTAAA 57.681 39.130 0.00 0.00 0.00 1.85
1326 1338 5.316987 AGTTTCAATCACCCCTGACTAAAG 58.683 41.667 0.00 0.00 0.00 1.85
1327 1339 5.073144 AGTTTCAATCACCCCTGACTAAAGA 59.927 40.000 0.00 0.00 0.00 2.52
1328 1340 4.826274 TCAATCACCCCTGACTAAAGAG 57.174 45.455 0.00 0.00 0.00 2.85
1329 1341 4.425772 TCAATCACCCCTGACTAAAGAGA 58.574 43.478 0.00 0.00 0.00 3.10
1330 1342 4.467795 TCAATCACCCCTGACTAAAGAGAG 59.532 45.833 0.00 0.00 0.00 3.20
1331 1343 2.821437 TCACCCCTGACTAAAGAGAGG 58.179 52.381 0.00 0.00 0.00 3.69
1332 1344 1.208293 CACCCCTGACTAAAGAGAGGC 59.792 57.143 0.00 0.00 0.00 4.70
1333 1345 1.079658 ACCCCTGACTAAAGAGAGGCT 59.920 52.381 0.00 0.00 0.00 4.58
1334 1346 2.315155 ACCCCTGACTAAAGAGAGGCTA 59.685 50.000 0.00 0.00 0.00 3.93
1335 1347 2.962421 CCCCTGACTAAAGAGAGGCTAG 59.038 54.545 0.00 0.00 0.00 3.42
1336 1348 3.373220 CCCCTGACTAAAGAGAGGCTAGA 60.373 52.174 0.00 0.00 0.00 2.43
1337 1349 4.282496 CCCTGACTAAAGAGAGGCTAGAA 58.718 47.826 0.00 0.00 0.00 2.10
1338 1350 4.098807 CCCTGACTAAAGAGAGGCTAGAAC 59.901 50.000 0.00 0.00 0.00 3.01
1339 1351 4.953579 CCTGACTAAAGAGAGGCTAGAACT 59.046 45.833 0.00 0.00 0.00 3.01
1340 1352 6.123651 CCTGACTAAAGAGAGGCTAGAACTA 58.876 44.000 0.00 0.00 0.00 2.24
1341 1353 6.262273 CCTGACTAAAGAGAGGCTAGAACTAG 59.738 46.154 0.00 4.67 36.29 2.57
1342 1354 6.723339 TGACTAAAGAGAGGCTAGAACTAGT 58.277 40.000 10.03 0.00 35.65 2.57
1343 1355 6.824704 TGACTAAAGAGAGGCTAGAACTAGTC 59.175 42.308 14.17 14.17 38.03 2.59
1393 1405 7.803279 GGAACCCTACTAAAATGTGGATTAG 57.197 40.000 0.00 0.00 35.67 1.73
1394 1406 7.344134 GGAACCCTACTAAAATGTGGATTAGT 58.656 38.462 3.93 3.93 43.05 2.24
1395 1407 7.832685 GGAACCCTACTAAAATGTGGATTAGTT 59.167 37.037 3.79 0.00 41.35 2.24
1396 1408 8.803397 AACCCTACTAAAATGTGGATTAGTTC 57.197 34.615 3.79 0.00 41.35 3.01
1397 1409 8.159229 ACCCTACTAAAATGTGGATTAGTTCT 57.841 34.615 3.79 0.00 41.35 3.01
1398 1410 8.265764 ACCCTACTAAAATGTGGATTAGTTCTC 58.734 37.037 3.79 0.00 41.35 2.87
1399 1411 8.487028 CCCTACTAAAATGTGGATTAGTTCTCT 58.513 37.037 3.79 0.00 41.35 3.10
1400 1412 9.535878 CCTACTAAAATGTGGATTAGTTCTCTC 57.464 37.037 3.79 0.00 41.35 3.20
1403 1415 9.041354 ACTAAAATGTGGATTAGTTCTCTCTCT 57.959 33.333 0.00 0.00 38.81 3.10
1404 1416 9.528018 CTAAAATGTGGATTAGTTCTCTCTCTC 57.472 37.037 0.00 0.00 0.00 3.20
1405 1417 6.478512 AATGTGGATTAGTTCTCTCTCTCC 57.521 41.667 0.00 0.00 0.00 3.71
1406 1418 5.199982 TGTGGATTAGTTCTCTCTCTCCT 57.800 43.478 0.00 0.00 0.00 3.69
1407 1419 5.197451 TGTGGATTAGTTCTCTCTCTCCTC 58.803 45.833 0.00 0.00 0.00 3.71
1408 1420 5.197451 GTGGATTAGTTCTCTCTCTCCTCA 58.803 45.833 0.00 0.00 0.00 3.86
1409 1421 5.833131 GTGGATTAGTTCTCTCTCTCCTCAT 59.167 44.000 0.00 0.00 0.00 2.90
1410 1422 6.323739 GTGGATTAGTTCTCTCTCTCCTCATT 59.676 42.308 0.00 0.00 0.00 2.57
1411 1423 6.900186 TGGATTAGTTCTCTCTCTCCTCATTT 59.100 38.462 0.00 0.00 0.00 2.32
1412 1424 8.061920 TGGATTAGTTCTCTCTCTCCTCATTTA 58.938 37.037 0.00 0.00 0.00 1.40
1413 1425 8.919145 GGATTAGTTCTCTCTCTCCTCATTTAA 58.081 37.037 0.00 0.00 0.00 1.52
1414 1426 9.744468 GATTAGTTCTCTCTCTCCTCATTTAAC 57.256 37.037 0.00 0.00 0.00 2.01
1415 1427 8.887264 TTAGTTCTCTCTCTCCTCATTTAACT 57.113 34.615 0.00 0.00 0.00 2.24
1416 1428 7.404671 AGTTCTCTCTCTCCTCATTTAACTC 57.595 40.000 0.00 0.00 0.00 3.01
1417 1429 6.379988 AGTTCTCTCTCTCCTCATTTAACTCC 59.620 42.308 0.00 0.00 0.00 3.85
1418 1430 6.086011 TCTCTCTCTCCTCATTTAACTCCT 57.914 41.667 0.00 0.00 0.00 3.69
1419 1431 6.126409 TCTCTCTCTCCTCATTTAACTCCTC 58.874 44.000 0.00 0.00 0.00 3.71
1420 1432 6.069088 TCTCTCTCTCCTCATTTAACTCCTCT 60.069 42.308 0.00 0.00 0.00 3.69
1421 1433 6.126409 TCTCTCTCCTCATTTAACTCCTCTC 58.874 44.000 0.00 0.00 0.00 3.20
1422 1434 5.205056 TCTCTCCTCATTTAACTCCTCTCC 58.795 45.833 0.00 0.00 0.00 3.71
1423 1435 5.043732 TCTCTCCTCATTTAACTCCTCTCCT 60.044 44.000 0.00 0.00 0.00 3.69
1424 1436 5.594777 TCTCCTCATTTAACTCCTCTCCTT 58.405 41.667 0.00 0.00 0.00 3.36
1425 1437 6.026186 TCTCCTCATTTAACTCCTCTCCTTT 58.974 40.000 0.00 0.00 0.00 3.11
1426 1438 7.189794 TCTCCTCATTTAACTCCTCTCCTTTA 58.810 38.462 0.00 0.00 0.00 1.85
1427 1439 7.678598 TCTCCTCATTTAACTCCTCTCCTTTAA 59.321 37.037 0.00 0.00 0.00 1.52
1428 1440 7.621796 TCCTCATTTAACTCCTCTCCTTTAAC 58.378 38.462 0.00 0.00 0.00 2.01
1429 1441 7.236847 TCCTCATTTAACTCCTCTCCTTTAACA 59.763 37.037 0.00 0.00 0.00 2.41
1430 1442 8.049721 CCTCATTTAACTCCTCTCCTTTAACAT 58.950 37.037 0.00 0.00 0.00 2.71
1434 1446 8.732746 TTTAACTCCTCTCCTTTAACATATGC 57.267 34.615 1.58 0.00 0.00 3.14
1435 1447 4.950050 ACTCCTCTCCTTTAACATATGCG 58.050 43.478 1.58 0.00 0.00 4.73
1436 1448 4.649674 ACTCCTCTCCTTTAACATATGCGA 59.350 41.667 1.58 0.00 0.00 5.10
1437 1449 5.201713 TCCTCTCCTTTAACATATGCGAG 57.798 43.478 1.58 0.00 0.00 5.03
1438 1450 4.649674 TCCTCTCCTTTAACATATGCGAGT 59.350 41.667 1.58 0.00 0.00 4.18
1439 1451 5.128827 TCCTCTCCTTTAACATATGCGAGTT 59.871 40.000 1.58 0.00 0.00 3.01
1440 1452 5.463724 CCTCTCCTTTAACATATGCGAGTTC 59.536 44.000 1.58 0.00 0.00 3.01
1441 1453 5.041287 TCTCCTTTAACATATGCGAGTTCG 58.959 41.667 1.58 0.00 43.27 3.95
1442 1454 4.116961 TCCTTTAACATATGCGAGTTCGG 58.883 43.478 1.58 0.00 40.23 4.30
1443 1455 3.247648 CCTTTAACATATGCGAGTTCGGG 59.752 47.826 1.58 0.00 40.23 5.14
1444 1456 3.804786 TTAACATATGCGAGTTCGGGA 57.195 42.857 1.58 0.00 40.23 5.14
1445 1457 2.910688 AACATATGCGAGTTCGGGAT 57.089 45.000 1.58 0.00 40.23 3.85
1446 1458 2.910688 ACATATGCGAGTTCGGGATT 57.089 45.000 1.58 0.00 40.23 3.01
1447 1459 2.483876 ACATATGCGAGTTCGGGATTG 58.516 47.619 1.58 0.00 40.23 2.67
1448 1460 1.800586 CATATGCGAGTTCGGGATTGG 59.199 52.381 3.50 0.00 40.23 3.16
1449 1461 1.116308 TATGCGAGTTCGGGATTGGA 58.884 50.000 3.50 0.00 40.23 3.53
1450 1462 0.179073 ATGCGAGTTCGGGATTGGAG 60.179 55.000 3.50 0.00 40.23 3.86
1451 1463 1.521681 GCGAGTTCGGGATTGGAGG 60.522 63.158 3.50 0.00 40.23 4.30
1452 1464 1.144057 CGAGTTCGGGATTGGAGGG 59.856 63.158 0.00 0.00 35.37 4.30
1453 1465 1.614241 CGAGTTCGGGATTGGAGGGT 61.614 60.000 0.00 0.00 35.37 4.34
1454 1466 0.618981 GAGTTCGGGATTGGAGGGTT 59.381 55.000 0.00 0.00 0.00 4.11
1455 1467 1.004394 GAGTTCGGGATTGGAGGGTTT 59.996 52.381 0.00 0.00 0.00 3.27
1456 1468 1.173913 GTTCGGGATTGGAGGGTTTG 58.826 55.000 0.00 0.00 0.00 2.93
1457 1469 0.039035 TTCGGGATTGGAGGGTTTGG 59.961 55.000 0.00 0.00 0.00 3.28
1458 1470 0.842905 TCGGGATTGGAGGGTTTGGA 60.843 55.000 0.00 0.00 0.00 3.53
1459 1471 0.394352 CGGGATTGGAGGGTTTGGAG 60.394 60.000 0.00 0.00 0.00 3.86
1460 1472 0.033109 GGGATTGGAGGGTTTGGAGG 60.033 60.000 0.00 0.00 0.00 4.30
1461 1473 0.999712 GGATTGGAGGGTTTGGAGGA 59.000 55.000 0.00 0.00 0.00 3.71
1462 1474 1.570979 GGATTGGAGGGTTTGGAGGAT 59.429 52.381 0.00 0.00 0.00 3.24
1463 1475 2.783510 GGATTGGAGGGTTTGGAGGATA 59.216 50.000 0.00 0.00 0.00 2.59
1464 1476 3.204382 GGATTGGAGGGTTTGGAGGATAA 59.796 47.826 0.00 0.00 0.00 1.75
1465 1477 4.140924 GGATTGGAGGGTTTGGAGGATAAT 60.141 45.833 0.00 0.00 0.00 1.28
1466 1478 5.074515 GGATTGGAGGGTTTGGAGGATAATA 59.925 44.000 0.00 0.00 0.00 0.98
1467 1479 6.411554 GGATTGGAGGGTTTGGAGGATAATAA 60.412 42.308 0.00 0.00 0.00 1.40
1468 1480 6.410222 TTGGAGGGTTTGGAGGATAATAAA 57.590 37.500 0.00 0.00 0.00 1.40
1469 1481 6.606241 TGGAGGGTTTGGAGGATAATAAAT 57.394 37.500 0.00 0.00 0.00 1.40
1470 1482 6.372931 TGGAGGGTTTGGAGGATAATAAATG 58.627 40.000 0.00 0.00 0.00 2.32
1471 1483 5.243954 GGAGGGTTTGGAGGATAATAAATGC 59.756 44.000 0.00 0.00 0.00 3.56
1472 1484 6.030727 AGGGTTTGGAGGATAATAAATGCT 57.969 37.500 0.00 0.00 0.00 3.79
1473 1485 6.071320 AGGGTTTGGAGGATAATAAATGCTC 58.929 40.000 0.00 0.00 36.02 4.26
1474 1486 5.833131 GGGTTTGGAGGATAATAAATGCTCA 59.167 40.000 8.48 0.00 38.10 4.26
1475 1487 6.494835 GGGTTTGGAGGATAATAAATGCTCAT 59.505 38.462 8.48 0.00 38.10 2.90
1476 1488 7.015584 GGGTTTGGAGGATAATAAATGCTCATT 59.984 37.037 8.48 0.00 38.10 2.57
1477 1489 9.077885 GGTTTGGAGGATAATAAATGCTCATTA 57.922 33.333 8.48 0.00 38.10 1.90
1480 1492 9.866655 TTGGAGGATAATAAATGCTCATTAACT 57.133 29.630 8.48 0.00 38.10 2.24
1481 1493 9.507329 TGGAGGATAATAAATGCTCATTAACTC 57.493 33.333 8.48 0.00 38.10 3.01
1482 1494 9.507329 GGAGGATAATAAATGCTCATTAACTCA 57.493 33.333 8.48 0.00 38.10 3.41
1518 1530 8.574251 TTTAGTATTTGTATCCAAGCATGTGT 57.426 30.769 0.00 0.00 0.00 3.72
1519 1531 6.441093 AGTATTTGTATCCAAGCATGTGTG 57.559 37.500 0.00 0.00 0.00 3.82
1520 1532 6.179756 AGTATTTGTATCCAAGCATGTGTGA 58.820 36.000 0.00 0.00 0.00 3.58
1521 1533 5.571784 ATTTGTATCCAAGCATGTGTGAG 57.428 39.130 0.00 0.00 0.00 3.51
1522 1534 2.989909 TGTATCCAAGCATGTGTGAGG 58.010 47.619 0.00 0.00 0.00 3.86
1523 1535 1.672881 GTATCCAAGCATGTGTGAGGC 59.327 52.381 0.00 0.00 0.00 4.70
1524 1536 0.330604 ATCCAAGCATGTGTGAGGCT 59.669 50.000 0.00 0.00 45.93 4.58
1525 1537 0.983467 TCCAAGCATGTGTGAGGCTA 59.017 50.000 0.00 0.00 42.15 3.93
1526 1538 1.065926 TCCAAGCATGTGTGAGGCTAG 60.066 52.381 0.00 0.00 42.15 3.42
1527 1539 0.731417 CAAGCATGTGTGAGGCTAGC 59.269 55.000 6.04 6.04 42.15 3.42
1528 1540 0.325933 AAGCATGTGTGAGGCTAGCA 59.674 50.000 18.24 0.00 42.15 3.49
1529 1541 0.325933 AGCATGTGTGAGGCTAGCAA 59.674 50.000 18.24 0.00 40.84 3.91
1530 1542 0.731417 GCATGTGTGAGGCTAGCAAG 59.269 55.000 18.24 0.00 0.00 4.01
1531 1543 1.947678 GCATGTGTGAGGCTAGCAAGT 60.948 52.381 18.24 0.00 0.00 3.16
1532 1544 2.430465 CATGTGTGAGGCTAGCAAGTT 58.570 47.619 18.24 0.00 0.00 2.66
1533 1545 2.638480 TGTGTGAGGCTAGCAAGTTT 57.362 45.000 18.24 0.00 0.00 2.66
1534 1546 2.930950 TGTGTGAGGCTAGCAAGTTTT 58.069 42.857 18.24 0.00 0.00 2.43
1535 1547 4.079980 TGTGTGAGGCTAGCAAGTTTTA 57.920 40.909 18.24 0.00 0.00 1.52
1536 1548 4.065088 TGTGTGAGGCTAGCAAGTTTTAG 58.935 43.478 18.24 0.00 0.00 1.85
1537 1549 4.065789 GTGTGAGGCTAGCAAGTTTTAGT 58.934 43.478 18.24 0.00 0.00 2.24
1538 1550 4.152580 GTGTGAGGCTAGCAAGTTTTAGTC 59.847 45.833 18.24 0.00 0.00 2.59
1539 1551 3.685272 GTGAGGCTAGCAAGTTTTAGTCC 59.315 47.826 18.24 0.00 0.00 3.85
1540 1552 3.271729 GAGGCTAGCAAGTTTTAGTCCC 58.728 50.000 18.24 0.00 0.00 4.46
1541 1553 2.642807 AGGCTAGCAAGTTTTAGTCCCA 59.357 45.455 18.24 0.00 0.00 4.37
1542 1554 3.267031 AGGCTAGCAAGTTTTAGTCCCAT 59.733 43.478 18.24 0.00 0.00 4.00
1543 1555 4.017126 GGCTAGCAAGTTTTAGTCCCATT 58.983 43.478 18.24 0.00 0.00 3.16
1544 1556 5.045140 AGGCTAGCAAGTTTTAGTCCCATTA 60.045 40.000 18.24 0.00 0.00 1.90
1545 1557 5.066117 GGCTAGCAAGTTTTAGTCCCATTAC 59.934 44.000 18.24 0.00 0.00 1.89
1546 1558 5.880887 GCTAGCAAGTTTTAGTCCCATTACT 59.119 40.000 10.63 0.00 0.00 2.24
1547 1559 6.374613 GCTAGCAAGTTTTAGTCCCATTACTT 59.625 38.462 10.63 0.00 0.00 2.24
1548 1560 7.094334 GCTAGCAAGTTTTAGTCCCATTACTTT 60.094 37.037 10.63 0.00 0.00 2.66
1549 1561 7.597288 AGCAAGTTTTAGTCCCATTACTTTT 57.403 32.000 0.00 0.00 0.00 2.27
1550 1562 8.700439 AGCAAGTTTTAGTCCCATTACTTTTA 57.300 30.769 0.00 0.00 0.00 1.52
1551 1563 8.793592 AGCAAGTTTTAGTCCCATTACTTTTAG 58.206 33.333 0.00 0.00 0.00 1.85
1552 1564 8.573885 GCAAGTTTTAGTCCCATTACTTTTAGT 58.426 33.333 0.00 0.00 0.00 2.24
1554 1566 9.856162 AAGTTTTAGTCCCATTACTTTTAGTCA 57.144 29.630 0.00 0.00 0.00 3.41
1557 1569 8.801882 TTTAGTCCCATTACTTTTAGTCATGG 57.198 34.615 11.40 11.40 45.26 3.66
1573 1585 4.761975 GTCATGGGACTAAAACGTATCCA 58.238 43.478 0.00 0.00 40.99 3.41
1574 1586 5.180271 GTCATGGGACTAAAACGTATCCAA 58.820 41.667 0.00 0.00 40.99 3.53
1575 1587 5.293569 GTCATGGGACTAAAACGTATCCAAG 59.706 44.000 0.00 0.00 40.99 3.61
1576 1588 3.602483 TGGGACTAAAACGTATCCAAGC 58.398 45.455 0.00 0.00 32.45 4.01
1577 1589 3.008157 TGGGACTAAAACGTATCCAAGCA 59.992 43.478 0.00 0.00 32.45 3.91
1578 1590 3.373130 GGGACTAAAACGTATCCAAGCAC 59.627 47.826 0.00 0.00 32.45 4.40
1579 1591 3.373130 GGACTAAAACGTATCCAAGCACC 59.627 47.826 0.00 0.00 0.00 5.01
1580 1592 3.340928 ACTAAAACGTATCCAAGCACCC 58.659 45.455 0.00 0.00 0.00 4.61
1581 1593 2.579410 AAAACGTATCCAAGCACCCT 57.421 45.000 0.00 0.00 0.00 4.34
1582 1594 2.109425 AAACGTATCCAAGCACCCTC 57.891 50.000 0.00 0.00 0.00 4.30
1592 1604 5.099042 TCCAAGCACCCTCTAAGTATTTC 57.901 43.478 0.00 0.00 0.00 2.17
1618 1630 4.563140 TGTCAAGGGTATACTTTGGACC 57.437 45.455 15.71 3.92 0.00 4.46
1640 1652 4.394920 CCAATAATTTCATATACGCCCGCT 59.605 41.667 0.00 0.00 0.00 5.52
1694 1706 0.833287 TGTGCTAGCTCTTGGATCCC 59.167 55.000 17.23 0.00 0.00 3.85
1697 1709 0.316841 GCTAGCTCTTGGATCCCTCG 59.683 60.000 9.90 0.00 0.00 4.63
1708 1720 2.705658 TGGATCCCTCGTATTGCATCTT 59.294 45.455 9.90 0.00 0.00 2.40
1721 1733 7.910162 TCGTATTGCATCTTTTTCTTTATGAGC 59.090 33.333 0.00 0.00 0.00 4.26
1789 1802 0.250295 CTTGGTGTCGGCTTCTCCAA 60.250 55.000 10.26 10.26 37.08 3.53
1795 1808 1.347707 TGTCGGCTTCTCCAAGATGTT 59.652 47.619 0.00 0.00 34.01 2.71
1820 1833 5.452777 GTCTATGTTGACAACTTTTCAGGC 58.547 41.667 18.73 5.75 36.97 4.85
1924 2242 3.007506 TGGATGCAGAAAGAAGACGGTTA 59.992 43.478 0.00 0.00 0.00 2.85
1929 2247 5.997385 TGCAGAAAGAAGACGGTTAATTTC 58.003 37.500 0.00 0.00 0.00 2.17
1935 2253 9.346005 AGAAAGAAGACGGTTAATTTCCTTAAA 57.654 29.630 0.00 0.00 31.22 1.52
2034 3223 2.799126 ATATGGGCGTTGTCTTTCCA 57.201 45.000 0.00 0.00 0.00 3.53
2173 3362 9.178427 GGACCTATAAAATATATACGATCACGC 57.822 37.037 0.00 0.00 43.96 5.34
2174 3363 9.726232 GACCTATAAAATATATACGATCACGCA 57.274 33.333 0.00 0.00 43.96 5.24
2203 3392 5.464965 AAAAACGATCACGACCATCATAC 57.535 39.130 0.00 0.00 42.66 2.39
2204 3393 4.386867 AAACGATCACGACCATCATACT 57.613 40.909 0.00 0.00 42.66 2.12
2205 3394 3.627732 ACGATCACGACCATCATACTC 57.372 47.619 0.00 0.00 42.66 2.59
2206 3395 3.215151 ACGATCACGACCATCATACTCT 58.785 45.455 0.00 0.00 42.66 3.24
2207 3396 3.003793 ACGATCACGACCATCATACTCTG 59.996 47.826 0.00 0.00 42.66 3.35
2208 3397 3.251004 CGATCACGACCATCATACTCTGA 59.749 47.826 0.00 0.00 42.66 3.27
2209 3398 4.612486 CGATCACGACCATCATACTCTGAG 60.612 50.000 2.45 2.45 42.66 3.35
2210 3399 2.359214 TCACGACCATCATACTCTGAGC 59.641 50.000 4.19 0.00 37.28 4.26
2211 3400 1.683917 ACGACCATCATACTCTGAGCC 59.316 52.381 4.19 0.00 37.28 4.70
2212 3401 1.959985 CGACCATCATACTCTGAGCCT 59.040 52.381 4.19 0.00 37.28 4.58
2213 3402 2.363680 CGACCATCATACTCTGAGCCTT 59.636 50.000 4.19 0.00 37.28 4.35
2214 3403 3.181471 CGACCATCATACTCTGAGCCTTT 60.181 47.826 4.19 0.00 37.28 3.11
2215 3404 4.038042 CGACCATCATACTCTGAGCCTTTA 59.962 45.833 4.19 0.00 37.28 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 8.346476 TCCGTTCACAAATAAAATGTTTTCAG 57.654 30.769 0.00 0.00 0.00 3.02
121 124 6.813152 CGCATATGAGTATATGACCATTGACA 59.187 38.462 6.97 0.00 45.92 3.58
156 159 6.071952 AGCATTTAAGGTGTTGTATCACTTGG 60.072 38.462 0.00 0.00 38.28 3.61
159 162 5.648092 GGAGCATTTAAGGTGTTGTATCACT 59.352 40.000 0.00 0.00 38.28 3.41
167 171 4.046286 TCATGGGAGCATTTAAGGTGTT 57.954 40.909 0.00 0.00 0.00 3.32
255 259 7.931578 TTTTTAGGGGTTGTAGTCACATATG 57.068 36.000 0.00 0.00 33.76 1.78
319 323 4.618489 CACTTTTCATTCCAGATTTGTCGC 59.382 41.667 0.00 0.00 0.00 5.19
320 324 5.762045 ACACTTTTCATTCCAGATTTGTCG 58.238 37.500 0.00 0.00 0.00 4.35
358 362 6.596888 CCAGATATGAACAGTGTCAATTCTGT 59.403 38.462 20.83 0.00 45.21 3.41
361 365 7.798596 ATCCAGATATGAACAGTGTCAATTC 57.201 36.000 0.00 0.00 0.00 2.17
405 409 9.757227 ATTCAGGTTGAAAATCGAAATTTACAA 57.243 25.926 0.00 0.00 40.12 2.41
406 410 9.757227 AATTCAGGTTGAAAATCGAAATTTACA 57.243 25.926 0.00 0.00 40.12 2.41
431 435 6.449635 AATGTGTCTACAACTGCTGAAAAA 57.550 33.333 0.00 0.00 40.84 1.94
455 459 7.763985 ACTTCAAAAATGTTAAGGTTCACAAGG 59.236 33.333 0.00 0.00 0.00 3.61
457 461 9.495572 AAACTTCAAAAATGTTAAGGTTCACAA 57.504 25.926 0.00 0.00 0.00 3.33
518 526 1.079197 CACGTGCTCCCATGCTACA 60.079 57.895 0.82 0.00 0.00 2.74
578 589 1.758862 AGCTGGCCCAAATTAATGCTC 59.241 47.619 0.00 0.00 0.00 4.26
668 680 3.952967 ACGGAGGGAGTACTAAACTGATC 59.047 47.826 0.00 0.00 39.07 2.92
669 681 3.978610 ACGGAGGGAGTACTAAACTGAT 58.021 45.455 0.00 0.00 39.07 2.90
670 682 3.446442 ACGGAGGGAGTACTAAACTGA 57.554 47.619 0.00 0.00 39.07 3.41
671 683 4.021719 TGAAACGGAGGGAGTACTAAACTG 60.022 45.833 0.00 0.00 39.07 3.16
672 684 4.154942 TGAAACGGAGGGAGTACTAAACT 58.845 43.478 0.00 0.00 42.80 2.66
673 685 4.525912 TGAAACGGAGGGAGTACTAAAC 57.474 45.455 0.00 0.00 0.00 2.01
674 686 5.549742 TTTGAAACGGAGGGAGTACTAAA 57.450 39.130 0.00 0.00 0.00 1.85
702 714 6.892456 AGTCACTTGTCTAGATATCCAAGACA 59.108 38.462 24.43 24.43 45.87 3.41
703 715 7.341445 AGTCACTTGTCTAGATATCCAAGAC 57.659 40.000 21.39 21.09 40.05 3.01
704 716 7.615757 TCAAGTCACTTGTCTAGATATCCAAGA 59.384 37.037 21.39 12.07 41.66 3.02
705 717 7.776107 TCAAGTCACTTGTCTAGATATCCAAG 58.224 38.462 17.27 15.64 41.66 3.61
706 718 7.718334 TCAAGTCACTTGTCTAGATATCCAA 57.282 36.000 17.27 0.00 41.66 3.53
707 719 7.904558 ATCAAGTCACTTGTCTAGATATCCA 57.095 36.000 17.27 0.00 41.66 3.41
708 720 8.851145 TGTATCAAGTCACTTGTCTAGATATCC 58.149 37.037 17.27 0.00 41.66 2.59
709 721 9.672086 GTGTATCAAGTCACTTGTCTAGATATC 57.328 37.037 17.27 0.00 41.66 1.63
710 722 8.634444 GGTGTATCAAGTCACTTGTCTAGATAT 58.366 37.037 17.27 4.34 41.66 1.63
711 723 7.068348 GGGTGTATCAAGTCACTTGTCTAGATA 59.932 40.741 17.27 4.77 41.66 1.98
712 724 6.127310 GGGTGTATCAAGTCACTTGTCTAGAT 60.127 42.308 17.27 5.74 41.66 1.98
713 725 5.185249 GGGTGTATCAAGTCACTTGTCTAGA 59.815 44.000 17.27 6.55 41.66 2.43
714 726 5.411781 GGGTGTATCAAGTCACTTGTCTAG 58.588 45.833 17.27 0.00 41.66 2.43
715 727 4.082408 CGGGTGTATCAAGTCACTTGTCTA 60.082 45.833 17.27 7.79 41.66 2.59
716 728 3.306088 CGGGTGTATCAAGTCACTTGTCT 60.306 47.826 17.27 8.73 41.66 3.41
717 729 2.993899 CGGGTGTATCAAGTCACTTGTC 59.006 50.000 17.27 9.66 41.66 3.18
718 730 2.367567 ACGGGTGTATCAAGTCACTTGT 59.632 45.455 17.27 7.54 41.66 3.16
719 731 3.040147 ACGGGTGTATCAAGTCACTTG 57.960 47.619 11.69 11.69 42.25 3.16
731 743 9.797642 TCTTATATTTGTCTAGATACGGGTGTA 57.202 33.333 0.00 0.00 34.45 2.90
732 744 8.574737 GTCTTATATTTGTCTAGATACGGGTGT 58.425 37.037 0.00 0.00 0.00 4.16
733 745 8.573885 TGTCTTATATTTGTCTAGATACGGGTG 58.426 37.037 0.00 0.00 0.00 4.61
734 746 8.701908 TGTCTTATATTTGTCTAGATACGGGT 57.298 34.615 0.00 0.00 0.00 5.28
735 747 9.627395 CTTGTCTTATATTTGTCTAGATACGGG 57.373 37.037 0.00 0.00 0.00 5.28
747 759 9.746711 CGTCTCAAACTTCTTGTCTTATATTTG 57.253 33.333 0.00 0.00 0.00 2.32
748 760 8.936864 CCGTCTCAAACTTCTTGTCTTATATTT 58.063 33.333 0.00 0.00 0.00 1.40
749 761 8.311836 TCCGTCTCAAACTTCTTGTCTTATATT 58.688 33.333 0.00 0.00 0.00 1.28
750 762 7.837863 TCCGTCTCAAACTTCTTGTCTTATAT 58.162 34.615 0.00 0.00 0.00 0.86
751 763 7.223260 TCCGTCTCAAACTTCTTGTCTTATA 57.777 36.000 0.00 0.00 0.00 0.98
752 764 6.097915 TCCGTCTCAAACTTCTTGTCTTAT 57.902 37.500 0.00 0.00 0.00 1.73
753 765 5.509163 CCTCCGTCTCAAACTTCTTGTCTTA 60.509 44.000 0.00 0.00 0.00 2.10
754 766 4.372656 CTCCGTCTCAAACTTCTTGTCTT 58.627 43.478 0.00 0.00 0.00 3.01
755 767 3.243907 CCTCCGTCTCAAACTTCTTGTCT 60.244 47.826 0.00 0.00 0.00 3.41
756 768 3.060602 CCTCCGTCTCAAACTTCTTGTC 58.939 50.000 0.00 0.00 0.00 3.18
757 769 2.224305 CCCTCCGTCTCAAACTTCTTGT 60.224 50.000 0.00 0.00 0.00 3.16
758 770 2.037251 TCCCTCCGTCTCAAACTTCTTG 59.963 50.000 0.00 0.00 0.00 3.02
759 771 2.326428 TCCCTCCGTCTCAAACTTCTT 58.674 47.619 0.00 0.00 0.00 2.52
760 772 2.011122 TCCCTCCGTCTCAAACTTCT 57.989 50.000 0.00 0.00 0.00 2.85
761 773 2.833631 TTCCCTCCGTCTCAAACTTC 57.166 50.000 0.00 0.00 0.00 3.01
762 774 3.838903 AGTATTCCCTCCGTCTCAAACTT 59.161 43.478 0.00 0.00 0.00 2.66
763 775 3.442076 AGTATTCCCTCCGTCTCAAACT 58.558 45.455 0.00 0.00 0.00 2.66
764 776 3.889520 AGTATTCCCTCCGTCTCAAAC 57.110 47.619 0.00 0.00 0.00 2.93
765 777 4.773674 TGTTAGTATTCCCTCCGTCTCAAA 59.226 41.667 0.00 0.00 0.00 2.69
766 778 4.346730 TGTTAGTATTCCCTCCGTCTCAA 58.653 43.478 0.00 0.00 0.00 3.02
767 779 3.972133 TGTTAGTATTCCCTCCGTCTCA 58.028 45.455 0.00 0.00 0.00 3.27
768 780 4.320348 CGATGTTAGTATTCCCTCCGTCTC 60.320 50.000 0.00 0.00 0.00 3.36
769 781 3.568853 CGATGTTAGTATTCCCTCCGTCT 59.431 47.826 0.00 0.00 0.00 4.18
770 782 3.856267 GCGATGTTAGTATTCCCTCCGTC 60.856 52.174 0.00 0.00 0.00 4.79
771 783 2.035576 GCGATGTTAGTATTCCCTCCGT 59.964 50.000 0.00 0.00 0.00 4.69
772 784 2.035449 TGCGATGTTAGTATTCCCTCCG 59.965 50.000 0.00 0.00 0.00 4.63
773 785 3.746045 TGCGATGTTAGTATTCCCTCC 57.254 47.619 0.00 0.00 0.00 4.30
774 786 7.773149 AGTATATGCGATGTTAGTATTCCCTC 58.227 38.462 0.00 0.00 0.00 4.30
775 787 7.719871 AGTATATGCGATGTTAGTATTCCCT 57.280 36.000 0.00 0.00 0.00 4.20
776 788 8.684520 AGTAGTATATGCGATGTTAGTATTCCC 58.315 37.037 0.00 0.00 0.00 3.97
777 789 9.719279 GAGTAGTATATGCGATGTTAGTATTCC 57.281 37.037 0.00 0.00 0.00 3.01
778 790 9.719279 GGAGTAGTATATGCGATGTTAGTATTC 57.281 37.037 0.00 0.00 0.00 1.75
779 791 9.239551 TGGAGTAGTATATGCGATGTTAGTATT 57.760 33.333 0.00 0.00 0.00 1.89
780 792 8.803397 TGGAGTAGTATATGCGATGTTAGTAT 57.197 34.615 0.00 0.00 0.00 2.12
786 798 4.827835 ACACTGGAGTAGTATATGCGATGT 59.172 41.667 0.00 0.00 37.60 3.06
868 880 4.024893 CCCAATCAACGTGCTATATGTGAC 60.025 45.833 0.00 0.00 0.00 3.67
929 941 0.895559 CCCAGCAGGACCCTTTTGAC 60.896 60.000 0.00 0.00 38.24 3.18
1020 1032 0.180406 ACGTCTTCTTGTTGGTGGCT 59.820 50.000 0.00 0.00 0.00 4.75
1027 1039 0.878961 GGCCACGACGTCTTCTTGTT 60.879 55.000 14.70 0.00 0.00 2.83
1030 1042 2.049433 CGGCCACGACGTCTTCTT 60.049 61.111 14.70 0.00 44.60 2.52
1167 1179 2.076100 GTGTCAATGAAGATGCGGACA 58.924 47.619 0.00 0.00 33.31 4.02
1224 1236 3.877559 CATGACCTTATGTTCAGGCAGA 58.122 45.455 0.00 0.00 34.32 4.26
1231 1243 4.276926 GGATCCAAGCATGACCTTATGTTC 59.723 45.833 6.95 0.00 0.00 3.18
1236 1248 3.889815 CTTGGATCCAAGCATGACCTTA 58.110 45.455 35.47 7.80 45.38 2.69
1237 1249 2.731572 CTTGGATCCAAGCATGACCTT 58.268 47.619 35.47 0.00 45.38 3.50
1238 1250 2.431954 CTTGGATCCAAGCATGACCT 57.568 50.000 35.47 0.00 45.38 3.85
1246 1258 7.283354 GACTAAAAATAGTCCCTTGGATCCAAG 59.717 40.741 37.68 37.68 42.75 3.61
1247 1259 7.036863 AGACTAAAAATAGTCCCTTGGATCCAA 60.037 37.037 25.53 25.53 45.66 3.53
1248 1260 6.447084 AGACTAAAAATAGTCCCTTGGATCCA 59.553 38.462 11.44 11.44 45.66 3.41
1249 1261 6.768381 CAGACTAAAAATAGTCCCTTGGATCC 59.232 42.308 4.20 4.20 45.66 3.36
1250 1262 7.496263 GTCAGACTAAAAATAGTCCCTTGGATC 59.504 40.741 11.35 0.00 45.66 3.36
1251 1263 7.182930 AGTCAGACTAAAAATAGTCCCTTGGAT 59.817 37.037 0.00 0.00 45.66 3.41
1252 1264 6.500751 AGTCAGACTAAAAATAGTCCCTTGGA 59.499 38.462 0.00 1.82 45.66 3.53
1253 1265 6.712276 AGTCAGACTAAAAATAGTCCCTTGG 58.288 40.000 0.00 0.00 45.66 3.61
1254 1266 9.720769 TTTAGTCAGACTAAAAATAGTCCCTTG 57.279 33.333 26.93 5.29 44.84 3.61
1275 1287 8.425237 AGCCTCTAAAAGAGACTAGTTTTAGT 57.575 34.615 18.01 3.65 45.07 2.24
1278 1290 9.713713 CTTTAGCCTCTAAAAGAGACTAGTTTT 57.286 33.333 5.50 0.00 45.07 2.43
1279 1291 8.872134 ACTTTAGCCTCTAAAAGAGACTAGTTT 58.128 33.333 5.50 0.00 45.07 2.66
1280 1292 8.425237 ACTTTAGCCTCTAAAAGAGACTAGTT 57.575 34.615 5.50 0.00 45.07 2.24
1281 1293 8.425237 AACTTTAGCCTCTAAAAGAGACTAGT 57.575 34.615 5.50 0.00 45.07 2.57
1282 1294 9.361315 GAAACTTTAGCCTCTAAAAGAGACTAG 57.639 37.037 5.50 0.00 45.07 2.57
1283 1295 8.867097 TGAAACTTTAGCCTCTAAAAGAGACTA 58.133 33.333 5.50 0.91 45.07 2.59
1284 1296 7.736893 TGAAACTTTAGCCTCTAAAAGAGACT 58.263 34.615 5.50 1.89 45.07 3.24
1285 1297 7.964604 TGAAACTTTAGCCTCTAAAAGAGAC 57.035 36.000 5.50 0.00 45.07 3.36
1286 1298 9.220767 GATTGAAACTTTAGCCTCTAAAAGAGA 57.779 33.333 5.50 0.00 45.07 3.10
1287 1299 9.003658 TGATTGAAACTTTAGCCTCTAAAAGAG 57.996 33.333 2.08 0.00 41.96 2.85
1288 1300 8.784043 GTGATTGAAACTTTAGCCTCTAAAAGA 58.216 33.333 2.08 0.00 36.43 2.52
1289 1301 8.023706 GGTGATTGAAACTTTAGCCTCTAAAAG 58.976 37.037 1.38 0.00 38.41 2.27
1290 1302 7.039993 GGGTGATTGAAACTTTAGCCTCTAAAA 60.040 37.037 1.38 0.00 0.00 1.52
1291 1303 6.433093 GGGTGATTGAAACTTTAGCCTCTAAA 59.567 38.462 0.00 0.00 0.00 1.85
1292 1304 5.944007 GGGTGATTGAAACTTTAGCCTCTAA 59.056 40.000 0.00 0.00 0.00 2.10
1293 1305 5.497474 GGGTGATTGAAACTTTAGCCTCTA 58.503 41.667 0.00 0.00 0.00 2.43
1294 1306 4.336280 GGGTGATTGAAACTTTAGCCTCT 58.664 43.478 0.00 0.00 0.00 3.69
1295 1307 3.444034 GGGGTGATTGAAACTTTAGCCTC 59.556 47.826 0.00 0.00 0.00 4.70
1296 1308 3.076032 AGGGGTGATTGAAACTTTAGCCT 59.924 43.478 0.00 0.00 0.00 4.58
1297 1309 3.193479 CAGGGGTGATTGAAACTTTAGCC 59.807 47.826 0.00 0.00 0.00 3.93
1298 1310 4.079253 TCAGGGGTGATTGAAACTTTAGC 58.921 43.478 0.00 0.00 0.00 3.09
1299 1311 5.316987 AGTCAGGGGTGATTGAAACTTTAG 58.683 41.667 0.00 0.00 0.00 1.85
1300 1312 5.319043 AGTCAGGGGTGATTGAAACTTTA 57.681 39.130 0.00 0.00 0.00 1.85
1301 1313 4.184649 AGTCAGGGGTGATTGAAACTTT 57.815 40.909 0.00 0.00 0.00 2.66
1302 1314 3.884037 AGTCAGGGGTGATTGAAACTT 57.116 42.857 0.00 0.00 0.00 2.66
1303 1315 4.993705 TTAGTCAGGGGTGATTGAAACT 57.006 40.909 0.00 0.00 0.00 2.66
1304 1316 5.313712 TCTTTAGTCAGGGGTGATTGAAAC 58.686 41.667 0.00 0.00 0.00 2.78
1305 1317 5.309543 TCTCTTTAGTCAGGGGTGATTGAAA 59.690 40.000 0.00 0.00 0.00 2.69
1306 1318 4.844085 TCTCTTTAGTCAGGGGTGATTGAA 59.156 41.667 0.00 0.00 0.00 2.69
1307 1319 4.425772 TCTCTTTAGTCAGGGGTGATTGA 58.574 43.478 0.00 0.00 0.00 2.57
1308 1320 4.383552 CCTCTCTTTAGTCAGGGGTGATTG 60.384 50.000 0.00 0.00 0.00 2.67
1309 1321 3.777522 CCTCTCTTTAGTCAGGGGTGATT 59.222 47.826 0.00 0.00 0.00 2.57
1310 1322 3.379452 CCTCTCTTTAGTCAGGGGTGAT 58.621 50.000 0.00 0.00 0.00 3.06
1311 1323 2.821437 CCTCTCTTTAGTCAGGGGTGA 58.179 52.381 0.00 0.00 0.00 4.02
1312 1324 1.208293 GCCTCTCTTTAGTCAGGGGTG 59.792 57.143 0.00 0.00 0.00 4.61
1313 1325 1.079658 AGCCTCTCTTTAGTCAGGGGT 59.920 52.381 0.00 0.00 0.00 4.95
1314 1326 1.872773 AGCCTCTCTTTAGTCAGGGG 58.127 55.000 0.00 0.00 0.00 4.79
1315 1327 3.904717 TCTAGCCTCTCTTTAGTCAGGG 58.095 50.000 0.00 0.00 0.00 4.45
1316 1328 4.953579 AGTTCTAGCCTCTCTTTAGTCAGG 59.046 45.833 0.00 0.00 0.00 3.86
1317 1329 6.826741 ACTAGTTCTAGCCTCTCTTTAGTCAG 59.173 42.308 6.75 0.00 0.00 3.51
1318 1330 6.723339 ACTAGTTCTAGCCTCTCTTTAGTCA 58.277 40.000 6.75 0.00 0.00 3.41
1319 1331 7.052248 AGACTAGTTCTAGCCTCTCTTTAGTC 58.948 42.308 0.00 0.00 36.42 2.59
1320 1332 6.965607 AGACTAGTTCTAGCCTCTCTTTAGT 58.034 40.000 0.00 0.00 30.17 2.24
1321 1333 7.554835 TCAAGACTAGTTCTAGCCTCTCTTTAG 59.445 40.741 0.00 0.34 32.51 1.85
1322 1334 7.403671 TCAAGACTAGTTCTAGCCTCTCTTTA 58.596 38.462 0.00 0.00 32.51 1.85
1323 1335 6.249951 TCAAGACTAGTTCTAGCCTCTCTTT 58.750 40.000 0.00 0.00 32.51 2.52
1324 1336 5.822204 TCAAGACTAGTTCTAGCCTCTCTT 58.178 41.667 0.00 5.91 32.51 2.85
1325 1337 5.190925 TCTCAAGACTAGTTCTAGCCTCTCT 59.809 44.000 0.00 0.60 32.51 3.10
1326 1338 5.296035 GTCTCAAGACTAGTTCTAGCCTCTC 59.704 48.000 0.00 0.00 41.65 3.20
1327 1339 5.190677 GTCTCAAGACTAGTTCTAGCCTCT 58.809 45.833 0.00 1.52 41.65 3.69
1328 1340 5.494632 GTCTCAAGACTAGTTCTAGCCTC 57.505 47.826 0.00 0.00 41.65 4.70
1367 1379 3.267551 TCCACATTTTAGTAGGGTTCCCC 59.732 47.826 4.02 0.00 45.90 4.81
1368 1380 4.579647 TCCACATTTTAGTAGGGTTCCC 57.420 45.455 0.00 0.00 0.00 3.97
1369 1381 7.344134 ACTAATCCACATTTTAGTAGGGTTCC 58.656 38.462 0.00 0.00 36.99 3.62
1370 1382 8.803397 AACTAATCCACATTTTAGTAGGGTTC 57.197 34.615 0.00 0.00 37.60 3.62
1371 1383 8.612145 AGAACTAATCCACATTTTAGTAGGGTT 58.388 33.333 0.00 0.00 37.60 4.11
1372 1384 8.159229 AGAACTAATCCACATTTTAGTAGGGT 57.841 34.615 0.00 0.00 37.60 4.34
1373 1385 8.487028 AGAGAACTAATCCACATTTTAGTAGGG 58.513 37.037 0.00 0.00 37.60 3.53
1374 1386 9.535878 GAGAGAACTAATCCACATTTTAGTAGG 57.464 37.037 0.00 0.00 37.60 3.18
1377 1389 9.041354 AGAGAGAGAACTAATCCACATTTTAGT 57.959 33.333 0.00 0.00 39.67 2.24
1378 1390 9.528018 GAGAGAGAGAACTAATCCACATTTTAG 57.472 37.037 0.00 0.00 0.00 1.85
1379 1391 8.478877 GGAGAGAGAGAACTAATCCACATTTTA 58.521 37.037 0.00 0.00 0.00 1.52
1380 1392 7.181845 AGGAGAGAGAGAACTAATCCACATTTT 59.818 37.037 0.00 0.00 31.94 1.82
1381 1393 6.671779 AGGAGAGAGAGAACTAATCCACATTT 59.328 38.462 0.00 0.00 31.94 2.32
1382 1394 6.201591 AGGAGAGAGAGAACTAATCCACATT 58.798 40.000 0.00 0.00 31.94 2.71
1383 1395 5.776358 AGGAGAGAGAGAACTAATCCACAT 58.224 41.667 0.00 0.00 31.94 3.21
1384 1396 5.197451 GAGGAGAGAGAGAACTAATCCACA 58.803 45.833 0.00 0.00 31.94 4.17
1385 1397 5.197451 TGAGGAGAGAGAGAACTAATCCAC 58.803 45.833 0.00 0.00 31.94 4.02
1386 1398 5.458451 TGAGGAGAGAGAGAACTAATCCA 57.542 43.478 0.00 0.00 31.94 3.41
1387 1399 6.976934 AATGAGGAGAGAGAGAACTAATCC 57.023 41.667 0.00 0.00 0.00 3.01
1388 1400 9.744468 GTTAAATGAGGAGAGAGAGAACTAATC 57.256 37.037 0.00 0.00 0.00 1.75
1389 1401 9.487442 AGTTAAATGAGGAGAGAGAGAACTAAT 57.513 33.333 0.00 0.00 0.00 1.73
1390 1402 8.887264 AGTTAAATGAGGAGAGAGAGAACTAA 57.113 34.615 0.00 0.00 0.00 2.24
1391 1403 7.558444 GGAGTTAAATGAGGAGAGAGAGAACTA 59.442 40.741 0.00 0.00 0.00 2.24
1392 1404 6.379988 GGAGTTAAATGAGGAGAGAGAGAACT 59.620 42.308 0.00 0.00 0.00 3.01
1393 1405 6.379988 AGGAGTTAAATGAGGAGAGAGAGAAC 59.620 42.308 0.00 0.00 0.00 3.01
1394 1406 6.498538 AGGAGTTAAATGAGGAGAGAGAGAA 58.501 40.000 0.00 0.00 0.00 2.87
1395 1407 6.069088 AGAGGAGTTAAATGAGGAGAGAGAGA 60.069 42.308 0.00 0.00 0.00 3.10
1396 1408 6.129179 AGAGGAGTTAAATGAGGAGAGAGAG 58.871 44.000 0.00 0.00 0.00 3.20
1397 1409 6.086011 AGAGGAGTTAAATGAGGAGAGAGA 57.914 41.667 0.00 0.00 0.00 3.10
1398 1410 5.301805 GGAGAGGAGTTAAATGAGGAGAGAG 59.698 48.000 0.00 0.00 0.00 3.20
1399 1411 5.043732 AGGAGAGGAGTTAAATGAGGAGAGA 60.044 44.000 0.00 0.00 0.00 3.10
1400 1412 5.208121 AGGAGAGGAGTTAAATGAGGAGAG 58.792 45.833 0.00 0.00 0.00 3.20
1401 1413 5.213868 AGGAGAGGAGTTAAATGAGGAGA 57.786 43.478 0.00 0.00 0.00 3.71
1402 1414 5.948742 AAGGAGAGGAGTTAAATGAGGAG 57.051 43.478 0.00 0.00 0.00 3.69
1403 1415 7.236847 TGTTAAAGGAGAGGAGTTAAATGAGGA 59.763 37.037 0.00 0.00 0.00 3.71
1404 1416 7.394816 TGTTAAAGGAGAGGAGTTAAATGAGG 58.605 38.462 0.00 0.00 0.00 3.86
1408 1420 9.343539 GCATATGTTAAAGGAGAGGAGTTAAAT 57.656 33.333 4.29 0.00 0.00 1.40
1409 1421 7.494625 CGCATATGTTAAAGGAGAGGAGTTAAA 59.505 37.037 4.29 0.00 0.00 1.52
1410 1422 6.984474 CGCATATGTTAAAGGAGAGGAGTTAA 59.016 38.462 4.29 0.00 0.00 2.01
1411 1423 6.322969 TCGCATATGTTAAAGGAGAGGAGTTA 59.677 38.462 4.29 0.00 0.00 2.24
1412 1424 5.128827 TCGCATATGTTAAAGGAGAGGAGTT 59.871 40.000 4.29 0.00 0.00 3.01
1413 1425 4.649674 TCGCATATGTTAAAGGAGAGGAGT 59.350 41.667 4.29 0.00 0.00 3.85
1414 1426 5.201713 TCGCATATGTTAAAGGAGAGGAG 57.798 43.478 4.29 0.00 0.00 3.69
1415 1427 4.649674 ACTCGCATATGTTAAAGGAGAGGA 59.350 41.667 4.29 0.00 0.00 3.71
1416 1428 4.950050 ACTCGCATATGTTAAAGGAGAGG 58.050 43.478 4.29 0.00 0.00 3.69
1417 1429 5.174035 CGAACTCGCATATGTTAAAGGAGAG 59.826 44.000 4.29 0.00 0.00 3.20
1418 1430 5.041287 CGAACTCGCATATGTTAAAGGAGA 58.959 41.667 4.29 0.00 0.00 3.71
1419 1431 4.209288 CCGAACTCGCATATGTTAAAGGAG 59.791 45.833 4.29 4.90 38.18 3.69
1420 1432 4.116961 CCGAACTCGCATATGTTAAAGGA 58.883 43.478 4.29 0.00 38.18 3.36
1421 1433 3.247648 CCCGAACTCGCATATGTTAAAGG 59.752 47.826 4.29 0.42 38.18 3.11
1422 1434 4.116961 TCCCGAACTCGCATATGTTAAAG 58.883 43.478 4.29 0.03 38.18 1.85
1423 1435 4.126208 TCCCGAACTCGCATATGTTAAA 57.874 40.909 4.29 0.00 38.18 1.52
1424 1436 3.804786 TCCCGAACTCGCATATGTTAA 57.195 42.857 4.29 0.00 38.18 2.01
1425 1437 4.055360 CAATCCCGAACTCGCATATGTTA 58.945 43.478 4.29 0.00 38.18 2.41
1426 1438 2.872245 CAATCCCGAACTCGCATATGTT 59.128 45.455 4.29 0.00 38.18 2.71
1427 1439 2.483876 CAATCCCGAACTCGCATATGT 58.516 47.619 4.29 0.00 38.18 2.29
1428 1440 1.800586 CCAATCCCGAACTCGCATATG 59.199 52.381 0.00 0.00 38.18 1.78
1429 1441 1.691976 TCCAATCCCGAACTCGCATAT 59.308 47.619 0.00 0.00 38.18 1.78
1430 1442 1.068588 CTCCAATCCCGAACTCGCATA 59.931 52.381 0.00 0.00 38.18 3.14
1431 1443 0.179073 CTCCAATCCCGAACTCGCAT 60.179 55.000 0.00 0.00 38.18 4.73
1432 1444 1.218047 CTCCAATCCCGAACTCGCA 59.782 57.895 0.00 0.00 38.18 5.10
1433 1445 1.521681 CCTCCAATCCCGAACTCGC 60.522 63.158 0.00 0.00 38.18 5.03
1434 1446 1.144057 CCCTCCAATCCCGAACTCG 59.856 63.158 0.00 0.00 39.44 4.18
1435 1447 0.618981 AACCCTCCAATCCCGAACTC 59.381 55.000 0.00 0.00 0.00 3.01
1436 1448 1.073098 AAACCCTCCAATCCCGAACT 58.927 50.000 0.00 0.00 0.00 3.01
1437 1449 1.173913 CAAACCCTCCAATCCCGAAC 58.826 55.000 0.00 0.00 0.00 3.95
1438 1450 0.039035 CCAAACCCTCCAATCCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
1439 1451 0.842905 TCCAAACCCTCCAATCCCGA 60.843 55.000 0.00 0.00 0.00 5.14
1440 1452 0.394352 CTCCAAACCCTCCAATCCCG 60.394 60.000 0.00 0.00 0.00 5.14
1441 1453 0.033109 CCTCCAAACCCTCCAATCCC 60.033 60.000 0.00 0.00 0.00 3.85
1442 1454 0.999712 TCCTCCAAACCCTCCAATCC 59.000 55.000 0.00 0.00 0.00 3.01
1443 1455 4.519906 TTATCCTCCAAACCCTCCAATC 57.480 45.455 0.00 0.00 0.00 2.67
1444 1456 6.606241 TTATTATCCTCCAAACCCTCCAAT 57.394 37.500 0.00 0.00 0.00 3.16
1445 1457 6.410222 TTTATTATCCTCCAAACCCTCCAA 57.590 37.500 0.00 0.00 0.00 3.53
1446 1458 6.372931 CATTTATTATCCTCCAAACCCTCCA 58.627 40.000 0.00 0.00 0.00 3.86
1447 1459 5.243954 GCATTTATTATCCTCCAAACCCTCC 59.756 44.000 0.00 0.00 0.00 4.30
1448 1460 6.071320 AGCATTTATTATCCTCCAAACCCTC 58.929 40.000 0.00 0.00 0.00 4.30
1449 1461 6.030727 AGCATTTATTATCCTCCAAACCCT 57.969 37.500 0.00 0.00 0.00 4.34
1450 1462 5.833131 TGAGCATTTATTATCCTCCAAACCC 59.167 40.000 0.00 0.00 0.00 4.11
1451 1463 6.959639 TGAGCATTTATTATCCTCCAAACC 57.040 37.500 0.00 0.00 0.00 3.27
1454 1466 9.866655 AGTTAATGAGCATTTATTATCCTCCAA 57.133 29.630 0.52 0.00 32.50 3.53
1455 1467 9.507329 GAGTTAATGAGCATTTATTATCCTCCA 57.493 33.333 0.52 0.00 32.50 3.86
1456 1468 9.507329 TGAGTTAATGAGCATTTATTATCCTCC 57.493 33.333 0.52 0.00 32.50 4.30
1503 1515 1.672881 GCCTCACACATGCTTGGATAC 59.327 52.381 4.44 0.00 0.00 2.24
1504 1516 1.561076 AGCCTCACACATGCTTGGATA 59.439 47.619 4.44 0.00 29.17 2.59
1505 1517 0.330604 AGCCTCACACATGCTTGGAT 59.669 50.000 4.44 0.00 29.17 3.41
1506 1518 0.983467 TAGCCTCACACATGCTTGGA 59.017 50.000 4.44 0.00 36.57 3.53
1507 1519 1.376543 CTAGCCTCACACATGCTTGG 58.623 55.000 4.44 0.00 36.57 3.61
1508 1520 0.731417 GCTAGCCTCACACATGCTTG 59.269 55.000 2.29 0.00 36.57 4.01
1509 1521 0.325933 TGCTAGCCTCACACATGCTT 59.674 50.000 13.29 0.00 36.57 3.91
1510 1522 0.325933 TTGCTAGCCTCACACATGCT 59.674 50.000 13.29 0.00 39.10 3.79
1511 1523 0.731417 CTTGCTAGCCTCACACATGC 59.269 55.000 13.29 0.00 0.00 4.06
1512 1524 2.105006 ACTTGCTAGCCTCACACATG 57.895 50.000 13.29 0.00 0.00 3.21
1513 1525 2.867109 AACTTGCTAGCCTCACACAT 57.133 45.000 13.29 0.00 0.00 3.21
1514 1526 2.638480 AAACTTGCTAGCCTCACACA 57.362 45.000 13.29 0.00 0.00 3.72
1515 1527 4.065789 ACTAAAACTTGCTAGCCTCACAC 58.934 43.478 13.29 0.00 0.00 3.82
1516 1528 4.315803 GACTAAAACTTGCTAGCCTCACA 58.684 43.478 13.29 0.00 0.00 3.58
1517 1529 3.685272 GGACTAAAACTTGCTAGCCTCAC 59.315 47.826 13.29 0.00 0.00 3.51
1518 1530 3.307480 GGGACTAAAACTTGCTAGCCTCA 60.307 47.826 13.29 0.00 0.00 3.86
1519 1531 3.271729 GGGACTAAAACTTGCTAGCCTC 58.728 50.000 13.29 0.00 0.00 4.70
1520 1532 2.642807 TGGGACTAAAACTTGCTAGCCT 59.357 45.455 13.29 0.00 0.00 4.58
1521 1533 3.067684 TGGGACTAAAACTTGCTAGCC 57.932 47.619 13.29 0.00 0.00 3.93
1522 1534 5.880887 AGTAATGGGACTAAAACTTGCTAGC 59.119 40.000 8.10 8.10 0.00 3.42
1523 1535 7.923414 AAGTAATGGGACTAAAACTTGCTAG 57.077 36.000 0.00 0.00 0.00 3.42
1524 1536 8.700439 AAAAGTAATGGGACTAAAACTTGCTA 57.300 30.769 0.00 0.00 0.00 3.49
1525 1537 7.597288 AAAAGTAATGGGACTAAAACTTGCT 57.403 32.000 0.00 0.00 0.00 3.91
1526 1538 8.573885 ACTAAAAGTAATGGGACTAAAACTTGC 58.426 33.333 0.00 0.00 0.00 4.01
1528 1540 9.856162 TGACTAAAAGTAATGGGACTAAAACTT 57.144 29.630 0.00 0.00 0.00 2.66
1549 1561 5.657745 TGGATACGTTTTAGTCCCATGACTA 59.342 40.000 0.00 0.00 45.97 2.59
1551 1563 4.761975 TGGATACGTTTTAGTCCCATGAC 58.238 43.478 0.00 0.00 40.25 3.06
1552 1564 5.423704 TTGGATACGTTTTAGTCCCATGA 57.576 39.130 0.00 0.00 42.51 3.07
1553 1565 4.035208 GCTTGGATACGTTTTAGTCCCATG 59.965 45.833 0.00 0.00 42.51 3.66
1554 1566 4.196971 GCTTGGATACGTTTTAGTCCCAT 58.803 43.478 0.00 0.00 42.51 4.00
1555 1567 3.008157 TGCTTGGATACGTTTTAGTCCCA 59.992 43.478 0.00 0.00 42.51 4.37
1556 1568 3.373130 GTGCTTGGATACGTTTTAGTCCC 59.627 47.826 0.00 0.00 42.51 4.46
1557 1569 3.373130 GGTGCTTGGATACGTTTTAGTCC 59.627 47.826 0.00 0.00 42.51 3.85
1558 1570 3.373130 GGGTGCTTGGATACGTTTTAGTC 59.627 47.826 0.00 0.00 42.51 2.59
1559 1571 3.008704 AGGGTGCTTGGATACGTTTTAGT 59.991 43.478 0.00 0.00 42.51 2.24
1560 1572 3.606687 AGGGTGCTTGGATACGTTTTAG 58.393 45.455 0.00 0.00 42.51 1.85
1561 1573 3.262405 AGAGGGTGCTTGGATACGTTTTA 59.738 43.478 0.00 0.00 42.51 1.52
1562 1574 2.039879 AGAGGGTGCTTGGATACGTTTT 59.960 45.455 0.00 0.00 42.51 2.43
1563 1575 1.628846 AGAGGGTGCTTGGATACGTTT 59.371 47.619 0.00 0.00 42.51 3.60
1564 1576 1.276622 AGAGGGTGCTTGGATACGTT 58.723 50.000 0.00 0.00 42.51 3.99
1565 1577 2.154567 TAGAGGGTGCTTGGATACGT 57.845 50.000 0.00 0.00 42.51 3.57
1566 1578 2.431057 ACTTAGAGGGTGCTTGGATACG 59.569 50.000 0.00 0.00 42.51 3.06
1567 1579 5.810080 ATACTTAGAGGGTGCTTGGATAC 57.190 43.478 0.00 0.00 0.00 2.24
1568 1580 6.615726 AGAAATACTTAGAGGGTGCTTGGATA 59.384 38.462 0.00 0.00 0.00 2.59
1569 1581 5.430089 AGAAATACTTAGAGGGTGCTTGGAT 59.570 40.000 0.00 0.00 0.00 3.41
1570 1582 4.783227 AGAAATACTTAGAGGGTGCTTGGA 59.217 41.667 0.00 0.00 0.00 3.53
1571 1583 5.104259 AGAAATACTTAGAGGGTGCTTGG 57.896 43.478 0.00 0.00 0.00 3.61
1572 1584 7.454260 AAAAGAAATACTTAGAGGGTGCTTG 57.546 36.000 0.00 0.00 37.93 4.01
1573 1585 7.505923 ACAAAAAGAAATACTTAGAGGGTGCTT 59.494 33.333 0.00 0.00 37.93 3.91
1574 1586 7.004691 ACAAAAAGAAATACTTAGAGGGTGCT 58.995 34.615 0.00 0.00 37.93 4.40
1575 1587 7.040686 TGACAAAAAGAAATACTTAGAGGGTGC 60.041 37.037 0.00 0.00 37.93 5.01
1576 1588 8.391075 TGACAAAAAGAAATACTTAGAGGGTG 57.609 34.615 0.00 0.00 37.93 4.61
1577 1589 8.990163 TTGACAAAAAGAAATACTTAGAGGGT 57.010 30.769 0.00 0.00 37.93 4.34
1578 1590 8.515414 CCTTGACAAAAAGAAATACTTAGAGGG 58.485 37.037 0.00 0.00 37.93 4.30
1579 1591 8.515414 CCCTTGACAAAAAGAAATACTTAGAGG 58.485 37.037 0.00 0.00 37.93 3.69
1580 1592 9.067986 ACCCTTGACAAAAAGAAATACTTAGAG 57.932 33.333 0.00 0.00 37.93 2.43
1581 1593 8.990163 ACCCTTGACAAAAAGAAATACTTAGA 57.010 30.769 0.00 0.00 37.93 2.10
1592 1604 7.368059 GTCCAAAGTATACCCTTGACAAAAAG 58.632 38.462 14.13 0.44 0.00 2.27
1611 1623 7.255660 GGGCGTATATGAAATTATTGGTCCAAA 60.256 37.037 8.75 0.00 0.00 3.28
1612 1624 6.207810 GGGCGTATATGAAATTATTGGTCCAA 59.792 38.462 6.80 6.80 0.00 3.53
1618 1630 5.447279 GGAGCGGGCGTATATGAAATTATTG 60.447 44.000 0.00 0.00 0.00 1.90
1694 1706 9.430838 CTCATAAAGAAAAAGATGCAATACGAG 57.569 33.333 0.00 0.00 0.00 4.18
1697 1709 9.578439 AAGCTCATAAAGAAAAAGATGCAATAC 57.422 29.630 0.00 0.00 0.00 1.89
1789 1802 5.869579 AGTTGTCAACATAGACCAACATCT 58.130 37.500 17.78 0.00 37.73 2.90
1795 1808 5.530915 CCTGAAAAGTTGTCAACATAGACCA 59.469 40.000 17.78 6.86 37.73 4.02
1809 1822 7.817418 TTATACAAGAAGTGCCTGAAAAGTT 57.183 32.000 0.00 0.00 0.00 2.66
1820 1833 7.745620 AACCCAGAAGTTTATACAAGAAGTG 57.254 36.000 0.00 0.00 0.00 3.16
1863 2173 1.040339 AAGCTAGCTCGGACCTCTGG 61.040 60.000 19.65 0.00 0.00 3.86
2013 3202 3.560068 GTGGAAAGACAACGCCCATATAG 59.440 47.826 0.00 0.00 0.00 1.31
2107 3296 8.796475 GGTCCACTTAAATGATAGTATACCGTA 58.204 37.037 0.00 0.00 0.00 4.02
2108 3297 7.508296 AGGTCCACTTAAATGATAGTATACCGT 59.492 37.037 0.00 0.00 35.28 4.83
2109 3298 7.893658 AGGTCCACTTAAATGATAGTATACCG 58.106 38.462 0.00 0.00 35.28 4.02
2147 3336 9.178427 GCGTGATCGTATATATTTTATAGGTCC 57.822 37.037 0.00 0.00 39.49 4.46
2148 3337 9.726232 TGCGTGATCGTATATATTTTATAGGTC 57.274 33.333 0.00 0.00 39.49 3.85
2181 3370 5.175859 AGTATGATGGTCGTGATCGTTTTT 58.824 37.500 0.00 0.00 38.33 1.94
2182 3371 4.755411 AGTATGATGGTCGTGATCGTTTT 58.245 39.130 0.00 0.00 38.33 2.43
2183 3372 4.098044 AGAGTATGATGGTCGTGATCGTTT 59.902 41.667 0.00 0.00 38.33 3.60
2184 3373 3.632604 AGAGTATGATGGTCGTGATCGTT 59.367 43.478 0.00 0.00 38.33 3.85
2185 3374 3.003793 CAGAGTATGATGGTCGTGATCGT 59.996 47.826 0.00 0.00 38.33 3.73
2186 3375 3.251004 TCAGAGTATGATGGTCGTGATCG 59.749 47.826 0.00 0.00 33.65 3.69
2187 3376 4.793071 CTCAGAGTATGATGGTCGTGATC 58.207 47.826 0.00 0.00 37.28 2.92
2188 3377 3.005261 GCTCAGAGTATGATGGTCGTGAT 59.995 47.826 0.00 0.00 37.28 3.06
2189 3378 2.359214 GCTCAGAGTATGATGGTCGTGA 59.641 50.000 0.00 0.00 37.28 4.35
2190 3379 2.544694 GGCTCAGAGTATGATGGTCGTG 60.545 54.545 0.00 0.00 37.28 4.35
2191 3380 1.683917 GGCTCAGAGTATGATGGTCGT 59.316 52.381 0.00 0.00 37.28 4.34
2192 3381 1.959985 AGGCTCAGAGTATGATGGTCG 59.040 52.381 0.00 0.00 37.28 4.79
2193 3382 4.414337 AAAGGCTCAGAGTATGATGGTC 57.586 45.455 0.00 0.00 37.28 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.