>input_sequence_86752
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---------------------------------------------------ATGAGCTGCTCGGAGAAGGTAGCCACCAA
CAAGAAGACGTCGTGGCCGGAGGTGGTAGGGCTGAGCGTGGAGAAGGCCAAGGAGATCATCCTCACGGACAAGCCCGACG
CCGACATCGTCGTCCTCCCCGTCGGCTCGCCGGTCACCAAGGACTACAGGTCCGAGCGTGTCCGCATCTTCATTGACACC
GTCGCCGAGATCCCCCACACTGGCTAG-----------------------------------------------------
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>chr5B_1_TraesCS5B01G281300
AAATAGGCTACATATAAACTGAAATGAATAAACAAATACATTAAAACATGTTTATATACATTCGATTTCATAAAACTGAA
AACATTTTAT--TTGTGAACGGAGGGAGTACGTATGCCGTTCTTGTCAATGGTCATATACTCATATGCGGGAAAAGTACC
AAGTGATA-CAACACCTTAAATGCTCCCATGATACCAACTTTGAGATAACAAATTTAAATGTTTCAAGAATTTCTGATTT
TTTTGTGAATGTTCACAACATATGTGACTACAACCCCTAAAAAAGTCAGATCAAAATTCAAAATACACATTAAGAAACAA
AAGCGACAAATCTGGAATGAAAAGTGTCAAAAAAGTCAAAAACAGAATTGACACTGTTCATATCTGGATTTGTCTTTTTT
ATTTCTCATTGTAAATTTCGATTTTCAACCTGAATTTTTCAGCAGTTGTAGACACATTCCTTGTGAACCTTAACATTTTT
GAAGTTTTTTTTTTTGAAACTAGAATTGAC----TTTTTTGAAATTGTAGCATGGGAGCACGTGCGTCTTGAT---ACTG
GATATTCTCCCATCATATGCGTGCTAGCGAGCATTAATTTGGGCCAGCTGGTCAACGACTCGATGCGCGGGACAGATACT
TAATTTCACATCATGG-ATCGTCAACTGATCCAGCTCGCGATCAGTTTAGTACTCCCTCCGTTTCAAAAAATTTGTCTTG
GATATCTAGACAAGTGACTTGATACACCCGTATCTAGACAAATATAAGACAAGAAGTTTGAGACGGAGGGAATACTAACA
TCGCATATACTACTCCAGTGTATATTTATATCCTATAAATAGGAGTAGTGTTGTTCGGGGATCGATCACATAGCTAGCTG
TCACATATAGCACGTTGATTGGGCAAACACATCACACAGGAAAGTATTACTCCATGGGAGGTCAAAAGGGTCCTGCTGGG
GTTAGTGTGATCATCGTGGGTCTGATCATAGTGATCATGGCCACTGCGGCTATGAGCTGCTCGGAGAAGGTAGCCACCAA
CAAGAAGACGTCGTGGCCGGAGGTGGTAGGGCTGAGCGTGGAGAAGGCCAAGGAGATCATCCTCACGGACAAGCCCGACG
CCGACATCGTCGTCCTCCCCGTCGGCTCGCCGGTCACCAAGGACTACAGGTCCGAGCGTGTCCGCATCTTCATTGACACC
GTCGCCGAGATCCCCCACACTGGCTAGCTAAGCTATCTGCCTGAACATAAGGTCATGCTTGGATCCAAGGGACTATTTTT
AGTCTGACTAAAACTAGTCTCTTTTAGAGGCTAAAGTTTCAATCACCCCTGACTAAAGAGAGGCTAGAACTAGTCTTGAG
ACTAAAATTTTTTAGTCAGGGGAACCCTACTAAAATGTGGATTAGTTCTCTCTCTCCTCATTTAACTCCTCTCCTTTAAC
ATATGCGAGTTCGGGATTGGAGGGTTTGGAGGATAATAAATGCTCATTAACTCATTTTAGTCTATTTAGTATTTGTATCC
AAGCATGTGTGAGGCTAGCAAGTTTTAGTCCCATTACTTTTAGTCATGGGACTAAAACGTATCCAAGCACCCTCTAAGTA
TTTCTTTTTGTCAAGGGTATACTTTGGACCAATAATTTCATATACGCCCGCTCCATATGGATCAATGCATGGATGTCATG
GGTTTGTGTGCTAGCTCTTGGATCCCTCGTATTGCATCTTTTTCTTTATGAGCTTTTTTTC-CCTATATGGTTGGACGGA
GTTGGATTATCTTCGGGCCACCCTTGGTGTCGGCTTCTCCAAGATGTTGGTCTATGTTGACAACTTTTCAGGCACTTCTT
GTATAAACTTCTGGGTTT--------------------------------------------------------------
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---------------------------------------------------------------------------CAGCA
AGGTTGCATGAGCCAGAGGTCCGAGCTAGCTTTGCTCA--------CGGCGAGCTCAGATGGATGCAGAAAGAAGACGGT
TAATTTCCTTAAAAGGACTTGCCTCTAATTTCTTGTTATTCTAAGAAAGTTTT--CAAGGGCTTTTTTTAGAATTTGGGT
ATT-----------------------------------------------------------------------------
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------------------------------------------------------------------------TAATATAT
ACTATATGGGCGTTGTCTTTCCACAAAAAATATTAAAAAGGAAAAAGTATTGCTTCATGAAATTTAACTTTTATGTTTAT
ATTTGTGTAAATTTTTACGGTATACTATCATTTAAGTGGACCTATAAAAAAAAGTGGACCTATAAAATATATACGATCAC
GCATTAAAAAAAAACGATCACGACCATCATACTCTGAGCCTTTA
>chr5D_1
AAATAGTCTACATATAGACTGAAACGAATGAACAAACACATTAAAACATATTTATATACATTCGATTTCATGAAAGTGAA
AACATTTTATATTTATGAACAGAGGGAATACGTATGCCGTTCTGTTCAATGGTCATATACTCATATGCTGGAAAAGCCAC
AGGTGATATC-ACACCTTAAATGCTCTCATGATACCAACTTTGAGACG-CAAATTTAAACGTTTCAAAATATTTTGAATC
TTTTATGAATGTTCACAATGTATGTGACTACAACCCCTAAAAAGGTCTGATCAAAATTCAAAATACACATTAAGAAACAA
AAAAGACAAATCTAGAATGAAAAGTGTCAAAAAAGTCAAAAGCATAATTGACACTGTTCACACCTGGATTTCTCTTTTTT
GTTTCTCAAGGTACATTTCGATTTTTAACCTGAAATTTTCAGCGGTTGTAGATACATTTCCTGTGAACATTCACAATTTT
CAGAATTTTTTGA--ACATCTAAAATTGAC----TTTTTTGAAATGGTAGCATGGGAGCACGTGAGTCTTGATATCACTG
GATATTCTCCCATCATATGCGTGCTAGCCAGCATTAATTTGGGCCAGCTGGTCAACGACTCGATGCGCGGGACAGATACT
TAATTTCACATCATGG-ATCGTCAACTGATCCAGCTCGATCAGTT--TAG------------------------------
------------------------------------------------------------------------TACTAGCA
TCGCATATACCA-------GTGTATATTTATCCTATAAATAGGAGTATTGTTGTTCGGGGATCGATCACATAGCTAGCTA
TCACACATAGCACGTTGATTGGGCAAACACATCACACAAGAAAGTATTACTCCATGGGGTTTCAAAAGGGTCCTGCTGGG
GTTAGTGCGATCATGGTGGGTCTGATCATAGTGATCATGGCCACTGCGGCTATGAGCTGCTCGGAGAAGGTGGCCACCGA
CGAGAAGACGTCGTGGCCGGAGGTGGTAGGGCTGAGCGTGGAGAAGGCCAAGGAGATCATCCTCAAGGACAAGCCCGACG
CCGACATCGTCGTCCTCCCCGTTGGCTCGCCGGTCACCAAGGACTACAGGTCCGAGCGCGTCCGCATCTTCATTGACACC
GTCGCCGAGATCCCCCACACTGGCTAGCTAAGCTACCTGTCTAAACA---------------------------------
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--------------------------------------------------------------------------TAAGTA
TTTATTTTTGTCAAGGGTATACA-TGGACGAATAATTTCATATACGCCCGCCCCACATGGATCAATGCATAGATGTCAT-
GGGTTTTGTGCTAGCTCTTGGATCCTTCATATTGCATCT-TTTCTTTATGAGTTTTTTTTCTCCTATATGCTTGGGCGGA
GTTGGATTATCTTCTGGGCACCCTTGGTGTCGGCTTCTCCAGGATGTCGGTCTATGTTGACGACTTTTCAGGAACTTCTT
GTATAAACTTCTGGGTTTCAGTGAGGCGGTGGCGATGCTTAAAGCACCAACGACAGACAGGTCACAACACCGCTCTCTTG
TTGAAGTGATTAGCAGCTTAGCACGCCGTCATGCTAGAGAGCTTGTATTCATGCAGTGTAACCGTTGGTAGAATACCGCG
AGTCATGAGTTGGCCGCGTATGGCCGTAGCACCCCACGTACA-CAGTCTGGTTCGTAGGAGGACCGGACTTTCTTGTAAA
CTTGGTTAAGGCCGAGAGGCCTCCTTGAGTAATGAAAGTTTTTTCCCCCTACAAGAAAAAAAAACTTCTGAGTTTCAGCA
AGGTTGCATGAGACAGAGGTCCGAGCTAGCTTTGCTCATGGAGTCACGGCGAGCTCAGATGGA-GCAGAAAGAAGACGGT
TCATTTTCTTAA-AGGACTTGCCTCTAATTTCTTGTTATTCTAAGAAAGTTTTTGCAAGGGCTTTTTCTAGGAAAAGCTA
GTGATCAACTGGCGGATCTTTTCTCTCACATCCACCATGTGCTACACTTGACACGCGTCTTGATGGGACAGCGCATCGCT
TCTCTCCTTCATCCCTATCTCCACCGAAATGGCCGCATATATTTATCTCTCCTTTCCATGAGTTGAATCAAACCTTCACC
CGCAACCTCTTTCTGGATCTCATCTGACCATGCAGAGCGCTCTATACTCCGATTCTTGCAACTAGGCACCTGTTTCAAAA
AACCACGCATTCTCACGCGCGCTGACCCTCCCATCTCGTATCTCTCTCTCTCTCCACGCCCTGCCTCTTTCCATGAATTT
CATCCCCACCTCTTGTCAAACAAGCATGTTTGCTACAACCCCACCACATCGGAGGCGGGCACTAGCGTCCTTCCTCCGTC
GTAAAAACACGGGTGCTGTAGAGACCACGGGGTGCTCTCTCTGTTGCAAGGTCGGTGTTCTTGCATGTTTTCGCAACAAC
AGTCTTGTTGCAGGAATACATAGAAGAGGCTGAAGATCTTGGGTTCTATTGCAATGGAGGTTTTGTCACAAGGGTCTTGT
TGCAGAAAAATAGAGAAGAAGTTCTACATCAAGGGTCTTGTTGCAGAAAAATAGAGAAGAAAATGTTTTGCAACAGGGGT
CTTGCTGCATGAAATTAGAGAAGAGAAGATTTTGCAATAGAGGTCTTGTTGCAGAGAATTAGAGAAGATTTTTTGTAACA
TGACTCCTGTTGCAGAAAGTTAGAGAAGAAGAGATTTTGCAACAAGGGCATTGTTGCAGGAAATTAGAGAAAAAAAAGAA
GACTCTCCTCGTACAATCAGACGGGTCGCGAGGCGGCGGATCGGCCGACACGTAGCACGACCCGTATTTTAATACTATAT
AATATATGGTCGTTGTCTTTCCGCAAAAAGTTAGAAAAAGGAAAATGTATTGCTTCATGAAATTTAACTTTTATGTTTAT
ATTTGTGTAAATTTT---GGTATACTATCATTTAAGTGGACCTAAAA---------------------------------
--------------------------------------------
>chr5A_1
AAATAGACTACATATAGATA-AAATGAATGAACAAACACATTAAAACATGTTTATATACATTCGATTTCATAAAAGTGAA
AACATTTTATATTTGTGAACGGAGGGAGTGCGTATGCCGTTCTGGTCAATGGTCATATACTCATATGCGGGGAAAGTATT
AGGTGATA-C-ACACCTTAAATGCTCCCATGATACCAACTTTGAGACGACGCATTTAAATGTTTCAAAATTTTCTGAATT
TTTTGTTAATGTTCACAAAGTATGTGACTAGAACCCCTAAAAAG-TCAGATCCAAATTCAAAATACACATTAAGAAACAA
AAAAGACAAACCTAGAATGAAAAGTGTGAAAAAAATCAAAAGCATAATTGACACTGTTCACATCCGGATTTCTCTTTTTT
GTTTCTCAAGGTTCATTTTGATTTTTATCCTGAAATTTTCAGCGGTTGTAGATACATTTCCTGTGAACATTCACATTTTT
TCAGAATTTTTTGAAACATCTAAAATTGACTCTTTTTTTTGAAATGGTAGCATGGGAGCACGTGAGTCTTGATATCACTG
GATATTCTCCCATCATATGCGTGCTAGACAGCATTAATTTGGGCCAGCTGGTCAACGACTCGATGGGCGGGACAGATACT
TAATTTCACATCATCGAATCGTCAACTGATCCAGCTCGCTCAGTTATTAG------------------------------
------------------------------------------------------------------------TACTGGCA
TCGCATACTAGTAGTG-----------------TATAAATAGGAGTAGTGTTGTTCGGGGATCGATCACATAGCTAACTA
TCACATATAGCACGTTGATTGGGCAAACACATCACACAAGAAAGTATTACTCCATGGGAGCTCAAAAGGGTCCTGCTGGG
GTTAGTGTGATCATGGTGAGTCTGATCATAGTGATCATGTCCACTGCGGCTATGAGCTGCTCGAAGAAGGCGGCCACCGA
CGAGAAGACGTCCTGGCCGGAGGTGGTAGGGTTGAGCGTGGAGAAGGCCAAGGAGATCATCCTCAAGGACAAGCCCGACG
CCGACATCGTCGTCCTCCCCGTTGGCTCGCCGGTCACCAAGGACTACAGGTCCCAGCGCGTCCGCATCTTCGTTGACATC
GTCGCCGAGACCCCCCACACTGGCTAGCTAAGCTACCTGCCTAAACA---------------------------------
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--------------------------------------------------------------------------TAAGTA
TTTATTTTTGTCAAGGGTATACA-TGGACGAATAATTTCATATACGCCCGCCGCATATGGATCAATGCATGGATGTCACG
GGTTTGTGTGCTAGCTCTTGGATCCTTGATATTGCATCTATTTCTTTATGAGTTTTTTTTC-CTAT--TGGTTGGACGGA
GTTGGATTATCTTCTGGCCACCCTTGGTGTCGGCTTCTCCAGGATGTCGGTCTATGTTGAGGACTTTTCAGGAACTTCTT
GTATAAACTTCTGGGTTTCAGTGAGGCGGTGGCGATGCTCAAAGCACCAACGACCGACATGTCACAACACCGCTCTCTCG
TCGAAGAGATTAGCAGC--AGCACGCCGTCATGCTAAAGAGCTTGTATTTGTGCAGTGTAGCTGTTGGCAGAATACCGCG
AGTCATGAGTTGGCCGCGTATAGCCGTAGCACCCCACGTACGGCAGTCTGGTTCACAGGTGGACTGAACTTTCTTGTAAA
CTTGGTTAAGGCCGAGAGGCCTCCTTGGGTAATGAAAGTTTTTTTTCTCCCGC---AAAAAAAACTTCTAGGTTTCAGCA
AGATTGCATGAGATAGAGGTCCGAGCTAGCTTTGCTCA--------CGGCAAACTCAGATGGATGCAAAAAGAAGACGGT
TCAATTTCCTAA-AGGACTTGCCTCTAATTTCTTGTTATTCTAAGGAAGTTTTTGCAAGGGCCTTTTCTAG---------
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>SNPs
------S---------S------------S------S--------------------------------------S----
-------------------------------------------S----------------------------------S-
-S--------S-----------------------------------SS-------------------S-S-------S--
------------------SS-----------------------S------------------------------------
--SS---------S---------------------------S--S---------------S----------S--------
S-------SS---S-----------S--------S--------S--------S-----S-S-------S--S--------
S---S-------SSSSS-S---S----------------------S------------------S---------------
----------------------------S---------------------------------------------------
---------------------------------------SSSSSSS----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--
----------S-SSSSSSS--S---S-S---------------------------------------------------S
--------------------------------------S---------------------S-------------------
--------------S--------------------------------------------------------S------S-
-S---------------------------------------------------------------S--------------
----------------------S-----------------------------------S---------------------
-----------------------------------S------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
---S------------------SS-----S---------------------S----------------------------
-------------------------S--S----------S------------S---------------------------
--------------S--------------------------S-----S-------------S----------S-------
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------------S-------------------------------------------------------------------
-S----S-----S------------------------------------------------------S---S-SSS-SSS
S-S-----------------------------------------------------------------------------
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--------------------------------------------------------------------------S-----
-S-------S------------S------S-SSS-----------S----------------------------------
---------------SSS--------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_683
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-----------------------AACTGATCCAGCTCGCGATC-------------------------------------
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>reverse_1521
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AAGCATGTGTGAGGCTAGCA------------------------------------------------------------
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--------------------------------------------
