Multiple sequence alignment - TraesCS5B01G280900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G280900 chr5B 100.000 2207 0 0 1 2207 466524606 466526812 0.000000e+00 4076.0
1 TraesCS5B01G280900 chr5B 82.428 313 31 6 1 290 250544294 250544605 3.640000e-63 252.0
2 TraesCS5B01G280900 chr5B 80.102 196 29 7 1016 1209 466616341 466616528 1.060000e-28 137.0
3 TraesCS5B01G280900 chr5D 89.351 1540 54 36 504 1962 387960318 387961828 0.000000e+00 1834.0
4 TraesCS5B01G280900 chr5D 90.809 272 14 2 1947 2207 387961847 387962118 9.690000e-94 353.0
5 TraesCS5B01G280900 chr5D 86.607 112 15 0 1018 1129 387989477 387989588 8.270000e-25 124.0
6 TraesCS5B01G280900 chr5A 92.239 786 30 5 654 1417 491093471 491094247 0.000000e+00 1085.0
7 TraesCS5B01G280900 chr5A 92.101 595 22 10 1399 1989 491094261 491094834 0.000000e+00 815.0
8 TraesCS5B01G280900 chr5A 95.918 147 4 2 500 646 491093163 491093307 1.020000e-58 237.0
9 TraesCS5B01G280900 chr5A 84.211 114 18 0 1016 1129 491162911 491163024 6.440000e-21 111.0
10 TraesCS5B01G280900 chr5A 96.667 60 2 0 317 376 491093054 491093113 1.390000e-17 100.0
11 TraesCS5B01G280900 chr4D 83.090 343 34 9 1 319 77292706 77293048 7.710000e-75 291.0
12 TraesCS5B01G280900 chr2D 82.609 345 35 10 1 320 403383072 403383416 4.640000e-72 281.0
13 TraesCS5B01G280900 chr2D 85.581 215 29 1 1 215 306302529 306302741 7.930000e-55 224.0
14 TraesCS5B01G280900 chr2D 76.301 346 52 12 1 319 503660674 503661016 8.160000e-35 158.0
15 TraesCS5B01G280900 chr7A 85.017 287 29 7 1 274 198014187 198013902 1.670000e-71 279.0
16 TraesCS5B01G280900 chr7A 80.882 340 40 10 1 316 163228238 163227900 6.090000e-61 244.0
17 TraesCS5B01G280900 chr7D 82.353 340 35 9 1 316 162113559 162113221 2.790000e-69 272.0
18 TraesCS5B01G280900 chr7D 86.538 208 26 1 1 208 614375673 614375878 6.130000e-56 228.0
19 TraesCS5B01G280900 chr7D 76.879 346 55 15 1 322 62233041 62232697 2.910000e-39 172.0
20 TraesCS5B01G280900 chr1D 81.791 335 35 11 1 310 474008838 474008505 7.820000e-65 257.0
21 TraesCS5B01G280900 chr1D 78.979 333 55 11 1 320 199833620 199833950 1.720000e-51 213.0
22 TraesCS5B01G280900 chr1D 98.148 54 1 0 323 376 416094169 416094222 6.490000e-16 95.3
23 TraesCS5B01G280900 chr3D 81.105 344 41 10 1 320 507761409 507761752 1.010000e-63 254.0
24 TraesCS5B01G280900 chr6A 80.516 349 38 15 1 322 387976975 387977320 7.870000e-60 241.0
25 TraesCS5B01G280900 chr3A 86.512 215 27 1 1 215 194481526 194481314 3.660000e-58 235.0
26 TraesCS5B01G280900 chr6B 80.115 347 39 15 1 320 433040478 433040821 4.740000e-57 231.0
27 TraesCS5B01G280900 chr6B 96.875 32 0 1 1017 1048 87560144 87560174 4.000000e-03 52.8
28 TraesCS5B01G280900 chr7B 79.769 346 40 17 1 320 438368940 438369281 7.930000e-55 224.0
29 TraesCS5B01G280900 chr7B 89.552 67 5 2 369 433 438882389 438882323 1.400000e-12 84.2
30 TraesCS5B01G280900 chr4A 77.778 288 42 10 57 322 736404480 736404767 8.160000e-35 158.0
31 TraesCS5B01G280900 chr2B 90.323 62 5 1 373 433 4184114 4184175 1.820000e-11 80.5
32 TraesCS5B01G280900 chr6D 96.875 32 0 1 1017 1048 37449700 37449730 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G280900 chr5B 466524606 466526812 2206 False 4076.00 4076 100.00000 1 2207 1 chr5B.!!$F2 2206
1 TraesCS5B01G280900 chr5D 387960318 387962118 1800 False 1093.50 1834 90.08000 504 2207 2 chr5D.!!$F2 1703
2 TraesCS5B01G280900 chr5A 491093054 491094834 1780 False 559.25 1085 94.23125 317 1989 4 chr5A.!!$F2 1672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
440 441 0.034186 GGTGCCATCATCCACTTCCA 60.034 55.0 0.0 0.0 32.68 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 2075 0.251354 TTCTAGAAGCTGCTGGCCAG 59.749 55.0 29.34 29.34 44.67 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.782042 GGTCGATGCGTCAGTTCC 58.218 61.111 6.75 0.00 0.00 3.62
18 19 1.215647 GGTCGATGCGTCAGTTCCT 59.784 57.895 6.75 0.00 0.00 3.36
19 20 1.078759 GGTCGATGCGTCAGTTCCTG 61.079 60.000 6.75 0.00 0.00 3.86
20 21 1.446099 TCGATGCGTCAGTTCCTGC 60.446 57.895 6.75 0.00 0.00 4.85
21 22 1.446792 CGATGCGTCAGTTCCTGCT 60.447 57.895 6.75 0.00 0.00 4.24
22 23 1.416813 CGATGCGTCAGTTCCTGCTC 61.417 60.000 6.75 0.00 0.00 4.26
23 24 0.108424 GATGCGTCAGTTCCTGCTCT 60.108 55.000 0.00 0.00 0.00 4.09
24 25 0.390866 ATGCGTCAGTTCCTGCTCTG 60.391 55.000 0.00 0.00 0.00 3.35
25 26 1.739562 GCGTCAGTTCCTGCTCTGG 60.740 63.158 0.00 0.00 33.13 3.86
26 27 1.967535 CGTCAGTTCCTGCTCTGGA 59.032 57.895 0.00 0.00 33.13 3.86
27 28 0.108898 CGTCAGTTCCTGCTCTGGAG 60.109 60.000 0.00 0.00 37.43 3.86
28 29 1.261480 GTCAGTTCCTGCTCTGGAGA 58.739 55.000 1.35 0.00 37.43 3.71
29 30 1.830477 GTCAGTTCCTGCTCTGGAGAT 59.170 52.381 1.35 0.00 37.43 2.75
30 31 1.829849 TCAGTTCCTGCTCTGGAGATG 59.170 52.381 1.35 0.86 37.43 2.90
31 32 1.134461 CAGTTCCTGCTCTGGAGATGG 60.134 57.143 1.35 2.92 37.43 3.51
32 33 1.198713 GTTCCTGCTCTGGAGATGGA 58.801 55.000 1.35 5.10 37.43 3.41
33 34 1.134551 GTTCCTGCTCTGGAGATGGAC 60.135 57.143 1.35 0.94 37.43 4.02
34 35 0.689080 TCCTGCTCTGGAGATGGACC 60.689 60.000 1.35 0.00 0.00 4.46
35 36 0.979709 CCTGCTCTGGAGATGGACCA 60.980 60.000 0.00 0.00 35.96 4.02
40 41 2.996985 CTGGAGATGGACCAGTGGA 58.003 57.895 18.40 0.00 46.71 4.02
41 42 1.504912 CTGGAGATGGACCAGTGGAT 58.495 55.000 18.40 0.00 46.71 3.41
42 43 1.140452 CTGGAGATGGACCAGTGGATG 59.860 57.143 18.40 0.00 46.71 3.51
43 44 1.273781 TGGAGATGGACCAGTGGATGA 60.274 52.381 18.40 0.00 33.22 2.92
44 45 2.053244 GGAGATGGACCAGTGGATGAT 58.947 52.381 18.40 3.59 0.00 2.45
45 46 2.224475 GGAGATGGACCAGTGGATGATG 60.224 54.545 18.40 0.00 0.00 3.07
46 47 1.773052 AGATGGACCAGTGGATGATGG 59.227 52.381 18.40 0.00 42.60 3.51
47 48 0.184451 ATGGACCAGTGGATGATGGC 59.816 55.000 18.40 0.00 40.45 4.40
48 49 1.524621 GGACCAGTGGATGATGGCG 60.525 63.158 18.40 0.00 40.45 5.69
49 50 1.524621 GACCAGTGGATGATGGCGG 60.525 63.158 18.40 0.00 40.45 6.13
50 51 2.203252 CCAGTGGATGATGGCGGG 60.203 66.667 1.68 0.00 0.00 6.13
51 52 2.203252 CAGTGGATGATGGCGGGG 60.203 66.667 0.00 0.00 0.00 5.73
52 53 2.692368 AGTGGATGATGGCGGGGT 60.692 61.111 0.00 0.00 0.00 4.95
53 54 2.203209 GTGGATGATGGCGGGGTC 60.203 66.667 0.00 0.00 0.00 4.46
54 55 2.690510 TGGATGATGGCGGGGTCA 60.691 61.111 0.00 0.00 0.00 4.02
55 56 2.111878 GGATGATGGCGGGGTCAG 59.888 66.667 0.00 0.00 0.00 3.51
56 57 2.592861 GATGATGGCGGGGTCAGC 60.593 66.667 0.00 0.00 0.00 4.26
63 64 4.154347 GCGGGGTCAGCCTCTGAG 62.154 72.222 0.00 0.00 41.46 3.35
64 65 2.363018 CGGGGTCAGCCTCTGAGA 60.363 66.667 6.17 0.00 41.46 3.27
65 66 2.422231 CGGGGTCAGCCTCTGAGAG 61.422 68.421 6.17 1.57 41.46 3.20
66 67 1.305718 GGGGTCAGCCTCTGAGAGT 60.306 63.158 8.88 0.00 41.46 3.24
67 68 1.612395 GGGGTCAGCCTCTGAGAGTG 61.612 65.000 8.88 1.11 41.46 3.51
68 69 1.217779 GGTCAGCCTCTGAGAGTGC 59.782 63.158 8.88 11.26 41.46 4.40
69 70 1.153862 GTCAGCCTCTGAGAGTGCG 60.154 63.158 8.88 8.14 41.46 5.34
70 71 2.508887 CAGCCTCTGAGAGTGCGC 60.509 66.667 8.88 0.00 33.40 6.09
71 72 3.768922 AGCCTCTGAGAGTGCGCC 61.769 66.667 4.18 0.00 33.40 6.53
72 73 4.074526 GCCTCTGAGAGTGCGCCA 62.075 66.667 4.18 0.00 0.00 5.69
73 74 2.183811 CCTCTGAGAGTGCGCCAG 59.816 66.667 4.18 4.34 0.00 4.85
74 75 2.346541 CCTCTGAGAGTGCGCCAGA 61.347 63.158 4.18 9.14 35.81 3.86
75 76 1.153862 CTCTGAGAGTGCGCCAGAC 60.154 63.158 4.18 0.00 33.80 3.51
76 77 2.125753 CTGAGAGTGCGCCAGACC 60.126 66.667 4.18 0.00 0.00 3.85
77 78 3.978723 CTGAGAGTGCGCCAGACCG 62.979 68.421 4.18 0.00 0.00 4.79
78 79 4.803426 GAGAGTGCGCCAGACCGG 62.803 72.222 4.18 0.00 38.11 5.28
86 87 4.699522 GCCAGACCGGTGTGGGAC 62.700 72.222 42.04 27.67 43.58 4.46
87 88 4.016706 CCAGACCGGTGTGGGACC 62.017 72.222 37.14 11.01 44.64 4.46
88 89 4.016706 CAGACCGGTGTGGGACCC 62.017 72.222 23.61 2.45 42.62 4.46
89 90 4.567597 AGACCGGTGTGGGACCCA 62.568 66.667 14.63 9.95 42.62 4.51
90 91 4.016706 GACCGGTGTGGGACCCAG 62.017 72.222 14.63 4.00 42.62 4.45
91 92 4.892291 ACCGGTGTGGGACCCAGT 62.892 66.667 15.52 4.77 42.62 4.00
92 93 4.016706 CCGGTGTGGGACCCAGTC 62.017 72.222 15.52 9.94 42.62 3.51
100 101 2.750350 GGACCCAGTCCCAGTGTG 59.250 66.667 2.14 0.00 46.19 3.82
101 102 2.147387 GGACCCAGTCCCAGTGTGT 61.147 63.158 2.14 0.00 46.19 3.72
102 103 1.071471 GACCCAGTCCCAGTGTGTG 59.929 63.158 0.00 0.00 0.00 3.82
104 105 2.281761 CCAGTCCCAGTGTGTGGC 60.282 66.667 0.00 0.00 46.45 5.01
105 106 2.822637 CCAGTCCCAGTGTGTGGCT 61.823 63.158 0.00 0.00 46.45 4.75
106 107 1.598962 CAGTCCCAGTGTGTGGCTG 60.599 63.158 0.00 0.00 46.45 4.85
111 112 2.749682 CAGTGTGTGGCTGGGCTA 59.250 61.111 0.00 0.00 0.00 3.93
112 113 1.376424 CAGTGTGTGGCTGGGCTAG 60.376 63.158 0.00 0.00 0.00 3.42
113 114 2.045926 GTGTGTGGCTGGGCTAGG 60.046 66.667 0.00 0.00 0.00 3.02
114 115 3.329889 TGTGTGGCTGGGCTAGGG 61.330 66.667 0.00 0.00 0.00 3.53
115 116 4.803908 GTGTGGCTGGGCTAGGGC 62.804 72.222 0.00 0.00 37.82 5.19
117 118 3.813724 GTGGCTGGGCTAGGGCAT 61.814 66.667 0.00 0.00 40.00 4.40
118 119 3.492353 TGGCTGGGCTAGGGCATC 61.492 66.667 0.00 0.00 40.87 3.91
119 120 4.277009 GGCTGGGCTAGGGCATCC 62.277 72.222 0.00 0.00 40.87 3.51
120 121 3.174265 GCTGGGCTAGGGCATCCT 61.174 66.667 0.00 0.00 46.96 3.24
121 122 2.834688 CTGGGCTAGGGCATCCTG 59.165 66.667 0.00 0.00 44.61 3.86
122 123 3.488467 CTGGGCTAGGGCATCCTGC 62.488 68.421 0.00 0.00 44.61 4.85
123 124 3.174265 GGGCTAGGGCATCCTGCT 61.174 66.667 0.00 0.00 44.61 4.24
124 125 1.843376 GGGCTAGGGCATCCTGCTA 60.843 63.158 0.00 0.00 44.61 3.49
125 126 1.204113 GGGCTAGGGCATCCTGCTAT 61.204 60.000 0.00 0.00 44.61 2.97
126 127 1.573108 GGCTAGGGCATCCTGCTATA 58.427 55.000 0.00 0.00 44.61 1.31
127 128 1.909302 GGCTAGGGCATCCTGCTATAA 59.091 52.381 0.00 0.00 44.61 0.98
128 129 2.305927 GGCTAGGGCATCCTGCTATAAA 59.694 50.000 0.00 0.00 44.61 1.40
129 130 3.054065 GGCTAGGGCATCCTGCTATAAAT 60.054 47.826 0.00 0.00 44.61 1.40
130 131 3.944015 GCTAGGGCATCCTGCTATAAATG 59.056 47.826 0.00 0.00 44.61 2.32
131 132 4.566488 GCTAGGGCATCCTGCTATAAATGT 60.566 45.833 0.00 0.00 44.61 2.71
132 133 4.459852 AGGGCATCCTGCTATAAATGTT 57.540 40.909 0.00 0.00 44.28 2.71
133 134 5.582950 AGGGCATCCTGCTATAAATGTTA 57.417 39.130 0.00 0.00 44.28 2.41
134 135 5.564550 AGGGCATCCTGCTATAAATGTTAG 58.435 41.667 0.00 0.00 44.28 2.34
135 136 4.702131 GGGCATCCTGCTATAAATGTTAGG 59.298 45.833 0.00 0.00 44.28 2.69
136 137 4.702131 GGCATCCTGCTATAAATGTTAGGG 59.298 45.833 0.00 0.00 44.28 3.53
137 138 5.316987 GCATCCTGCTATAAATGTTAGGGT 58.683 41.667 0.00 0.00 40.96 4.34
138 139 5.770162 GCATCCTGCTATAAATGTTAGGGTT 59.230 40.000 0.00 0.00 40.96 4.11
139 140 6.265422 GCATCCTGCTATAAATGTTAGGGTTT 59.735 38.462 0.00 0.00 40.96 3.27
140 141 7.651808 CATCCTGCTATAAATGTTAGGGTTTG 58.348 38.462 0.00 0.00 0.00 2.93
141 142 6.126409 TCCTGCTATAAATGTTAGGGTTTGG 58.874 40.000 0.00 0.00 0.00 3.28
142 143 5.891551 CCTGCTATAAATGTTAGGGTTTGGT 59.108 40.000 0.00 0.00 0.00 3.67
143 144 6.183360 CCTGCTATAAATGTTAGGGTTTGGTG 60.183 42.308 0.00 0.00 0.00 4.17
144 145 5.126384 TGCTATAAATGTTAGGGTTTGGTGC 59.874 40.000 0.00 0.00 0.00 5.01
145 146 4.712122 ATAAATGTTAGGGTTTGGTGCG 57.288 40.909 0.00 0.00 0.00 5.34
146 147 1.253100 AATGTTAGGGTTTGGTGCGG 58.747 50.000 0.00 0.00 0.00 5.69
147 148 0.111639 ATGTTAGGGTTTGGTGCGGT 59.888 50.000 0.00 0.00 0.00 5.68
148 149 0.820074 TGTTAGGGTTTGGTGCGGTG 60.820 55.000 0.00 0.00 0.00 4.94
149 150 0.820482 GTTAGGGTTTGGTGCGGTGT 60.820 55.000 0.00 0.00 0.00 4.16
150 151 0.535553 TTAGGGTTTGGTGCGGTGTC 60.536 55.000 0.00 0.00 0.00 3.67
151 152 1.412453 TAGGGTTTGGTGCGGTGTCT 61.412 55.000 0.00 0.00 0.00 3.41
152 153 2.551912 GGGTTTGGTGCGGTGTCTG 61.552 63.158 0.00 0.00 0.00 3.51
153 154 1.822186 GGTTTGGTGCGGTGTCTGT 60.822 57.895 0.00 0.00 0.00 3.41
154 155 1.381165 GGTTTGGTGCGGTGTCTGTT 61.381 55.000 0.00 0.00 0.00 3.16
155 156 0.454196 GTTTGGTGCGGTGTCTGTTT 59.546 50.000 0.00 0.00 0.00 2.83
156 157 0.453793 TTTGGTGCGGTGTCTGTTTG 59.546 50.000 0.00 0.00 0.00 2.93
157 158 1.380403 TTGGTGCGGTGTCTGTTTGG 61.380 55.000 0.00 0.00 0.00 3.28
158 159 1.822186 GGTGCGGTGTCTGTTTGGT 60.822 57.895 0.00 0.00 0.00 3.67
159 160 0.533308 GGTGCGGTGTCTGTTTGGTA 60.533 55.000 0.00 0.00 0.00 3.25
160 161 1.519408 GTGCGGTGTCTGTTTGGTAT 58.481 50.000 0.00 0.00 0.00 2.73
161 162 1.877443 GTGCGGTGTCTGTTTGGTATT 59.123 47.619 0.00 0.00 0.00 1.89
162 163 3.068560 GTGCGGTGTCTGTTTGGTATTA 58.931 45.455 0.00 0.00 0.00 0.98
163 164 3.124636 GTGCGGTGTCTGTTTGGTATTAG 59.875 47.826 0.00 0.00 0.00 1.73
164 165 2.676342 GCGGTGTCTGTTTGGTATTAGG 59.324 50.000 0.00 0.00 0.00 2.69
165 166 3.867216 GCGGTGTCTGTTTGGTATTAGGT 60.867 47.826 0.00 0.00 0.00 3.08
166 167 3.930848 CGGTGTCTGTTTGGTATTAGGTC 59.069 47.826 0.00 0.00 0.00 3.85
167 168 4.259356 GGTGTCTGTTTGGTATTAGGTCC 58.741 47.826 0.00 0.00 0.00 4.46
168 169 3.930848 GTGTCTGTTTGGTATTAGGTCCG 59.069 47.826 0.00 0.00 0.00 4.79
169 170 3.055675 TGTCTGTTTGGTATTAGGTCCGG 60.056 47.826 0.00 0.00 0.00 5.14
170 171 3.196254 GTCTGTTTGGTATTAGGTCCGGA 59.804 47.826 0.00 0.00 0.00 5.14
171 172 4.035112 TCTGTTTGGTATTAGGTCCGGAT 58.965 43.478 7.81 0.00 0.00 4.18
172 173 5.069516 GTCTGTTTGGTATTAGGTCCGGATA 59.930 44.000 7.81 0.00 0.00 2.59
173 174 5.662208 TCTGTTTGGTATTAGGTCCGGATAA 59.338 40.000 7.81 3.19 0.00 1.75
174 175 6.328148 TCTGTTTGGTATTAGGTCCGGATAAT 59.672 38.462 7.81 11.52 0.00 1.28
175 176 6.527423 TGTTTGGTATTAGGTCCGGATAATC 58.473 40.000 7.81 3.49 0.00 1.75
176 177 5.395682 TTGGTATTAGGTCCGGATAATCG 57.604 43.478 7.81 0.00 0.00 3.34
184 185 3.914984 CCGGATAATCGGCACATCT 57.085 52.632 0.00 0.00 43.71 2.90
185 186 2.169832 CCGGATAATCGGCACATCTT 57.830 50.000 0.00 0.00 43.71 2.40
186 187 2.069273 CCGGATAATCGGCACATCTTC 58.931 52.381 0.00 0.00 43.71 2.87
187 188 2.547855 CCGGATAATCGGCACATCTTCA 60.548 50.000 0.00 0.00 43.71 3.02
188 189 3.329386 CGGATAATCGGCACATCTTCAT 58.671 45.455 0.00 0.00 0.00 2.57
189 190 3.369147 CGGATAATCGGCACATCTTCATC 59.631 47.826 0.00 0.00 0.00 2.92
190 191 4.318332 GGATAATCGGCACATCTTCATCA 58.682 43.478 0.00 0.00 0.00 3.07
191 192 4.756642 GGATAATCGGCACATCTTCATCAA 59.243 41.667 0.00 0.00 0.00 2.57
192 193 5.106791 GGATAATCGGCACATCTTCATCAAG 60.107 44.000 0.00 0.00 0.00 3.02
193 194 2.768253 TCGGCACATCTTCATCAAGT 57.232 45.000 0.00 0.00 0.00 3.16
194 195 2.349590 TCGGCACATCTTCATCAAGTG 58.650 47.619 0.00 0.00 0.00 3.16
195 196 1.399440 CGGCACATCTTCATCAAGTGG 59.601 52.381 0.00 0.00 0.00 4.00
196 197 2.715046 GGCACATCTTCATCAAGTGGA 58.285 47.619 0.00 0.00 0.00 4.02
197 198 3.285484 GGCACATCTTCATCAAGTGGAT 58.715 45.455 0.00 0.00 36.39 3.41
198 199 4.454678 GGCACATCTTCATCAAGTGGATA 58.545 43.478 0.00 0.00 33.95 2.59
199 200 4.514441 GGCACATCTTCATCAAGTGGATAG 59.486 45.833 0.00 0.00 33.95 2.08
200 201 4.514441 GCACATCTTCATCAAGTGGATAGG 59.486 45.833 0.00 0.00 33.95 2.57
201 202 5.685861 GCACATCTTCATCAAGTGGATAGGA 60.686 44.000 0.00 0.00 33.95 2.94
202 203 5.990386 CACATCTTCATCAAGTGGATAGGAG 59.010 44.000 0.00 0.00 33.95 3.69
203 204 5.664908 ACATCTTCATCAAGTGGATAGGAGT 59.335 40.000 0.00 0.00 33.95 3.85
204 205 6.841229 ACATCTTCATCAAGTGGATAGGAGTA 59.159 38.462 0.00 0.00 33.95 2.59
205 206 6.968263 TCTTCATCAAGTGGATAGGAGTAG 57.032 41.667 0.00 0.00 33.95 2.57
206 207 5.303078 TCTTCATCAAGTGGATAGGAGTAGC 59.697 44.000 0.00 0.00 33.95 3.58
207 208 4.546674 TCATCAAGTGGATAGGAGTAGCA 58.453 43.478 0.00 0.00 33.95 3.49
208 209 4.962362 TCATCAAGTGGATAGGAGTAGCAA 59.038 41.667 0.00 0.00 33.95 3.91
209 210 4.737855 TCAAGTGGATAGGAGTAGCAAC 57.262 45.455 0.00 0.00 0.00 4.17
210 211 4.093743 TCAAGTGGATAGGAGTAGCAACA 58.906 43.478 0.00 0.00 0.00 3.33
211 212 4.716784 TCAAGTGGATAGGAGTAGCAACAT 59.283 41.667 0.00 0.00 0.00 2.71
212 213 4.679373 AGTGGATAGGAGTAGCAACATG 57.321 45.455 0.00 0.00 0.00 3.21
213 214 4.033709 AGTGGATAGGAGTAGCAACATGT 58.966 43.478 0.00 0.00 0.00 3.21
214 215 4.122776 GTGGATAGGAGTAGCAACATGTG 58.877 47.826 0.00 0.00 0.00 3.21
224 225 2.178474 GCAACATGTGCGGACTAATG 57.822 50.000 8.99 7.23 45.10 1.90
225 226 1.468520 GCAACATGTGCGGACTAATGT 59.531 47.619 8.99 7.92 45.10 2.71
226 227 2.675844 GCAACATGTGCGGACTAATGTA 59.324 45.455 12.35 0.00 45.10 2.29
227 228 3.312421 GCAACATGTGCGGACTAATGTAT 59.688 43.478 12.35 2.67 45.10 2.29
228 229 4.201910 GCAACATGTGCGGACTAATGTATT 60.202 41.667 12.35 0.00 45.10 1.89
229 230 5.007234 GCAACATGTGCGGACTAATGTATTA 59.993 40.000 12.35 0.00 45.10 0.98
230 231 6.418956 CAACATGTGCGGACTAATGTATTAC 58.581 40.000 12.35 0.00 33.04 1.89
231 232 5.914033 ACATGTGCGGACTAATGTATTACT 58.086 37.500 10.65 0.00 31.63 2.24
232 233 6.346096 ACATGTGCGGACTAATGTATTACTT 58.654 36.000 10.65 0.00 31.63 2.24
233 234 6.821665 ACATGTGCGGACTAATGTATTACTTT 59.178 34.615 10.65 0.00 31.63 2.66
234 235 6.656314 TGTGCGGACTAATGTATTACTTTG 57.344 37.500 8.99 0.19 0.00 2.77
235 236 6.167685 TGTGCGGACTAATGTATTACTTTGT 58.832 36.000 8.99 2.70 0.00 2.83
236 237 7.321908 TGTGCGGACTAATGTATTACTTTGTA 58.678 34.615 8.99 0.00 0.00 2.41
237 238 7.276218 TGTGCGGACTAATGTATTACTTTGTAC 59.724 37.037 8.99 0.00 0.00 2.90
238 239 6.473131 TGCGGACTAATGTATTACTTTGTACG 59.527 38.462 16.40 16.40 31.09 3.67
239 240 6.074676 GCGGACTAATGTATTACTTTGTACGG 60.075 42.308 19.18 10.83 29.93 4.02
240 241 6.974622 CGGACTAATGTATTACTTTGTACGGT 59.025 38.462 14.65 0.00 0.00 4.83
241 242 8.128582 CGGACTAATGTATTACTTTGTACGGTA 58.871 37.037 14.65 0.00 0.00 4.02
242 243 9.971922 GGACTAATGTATTACTTTGTACGGTAT 57.028 33.333 5.46 0.00 0.00 2.73
248 249 9.656040 ATGTATTACTTTGTACGGTATTTGTGA 57.344 29.630 0.00 0.00 0.00 3.58
249 250 9.486497 TGTATTACTTTGTACGGTATTTGTGAA 57.514 29.630 0.00 0.00 0.00 3.18
269 270 9.881649 TTGTGAATAATTAATAAAATGGCTGCA 57.118 25.926 0.50 0.00 0.00 4.41
272 273 8.991026 TGAATAATTAATAAAATGGCTGCATGC 58.009 29.630 11.82 11.82 41.94 4.06
273 274 8.905660 AATAATTAATAAAATGGCTGCATGCA 57.094 26.923 21.29 21.29 45.15 3.96
274 275 9.509956 AATAATTAATAAAATGGCTGCATGCAT 57.490 25.926 22.97 6.91 45.15 3.96
275 276 7.429636 AATTAATAAAATGGCTGCATGCATC 57.570 32.000 22.97 17.75 45.15 3.91
276 277 2.495409 TAAAATGGCTGCATGCATCG 57.505 45.000 22.97 12.00 45.15 3.84
277 278 0.533491 AAAATGGCTGCATGCATCGT 59.467 45.000 22.97 14.84 45.15 3.73
278 279 0.101759 AAATGGCTGCATGCATCGTC 59.898 50.000 22.97 13.00 45.15 4.20
279 280 1.731433 AATGGCTGCATGCATCGTCC 61.731 55.000 22.97 19.03 45.15 4.79
280 281 2.825387 GGCTGCATGCATCGTCCA 60.825 61.111 22.97 0.00 45.15 4.02
281 282 2.409055 GGCTGCATGCATCGTCCAA 61.409 57.895 22.97 0.00 45.15 3.53
282 283 1.507630 GCTGCATGCATCGTCCAAA 59.492 52.632 22.97 0.00 42.31 3.28
283 284 0.101759 GCTGCATGCATCGTCCAAAT 59.898 50.000 22.97 0.00 42.31 2.32
284 285 1.835121 CTGCATGCATCGTCCAAATG 58.165 50.000 22.97 0.79 0.00 2.32
289 290 3.911989 GCATCGTCCAAATGCAGAG 57.088 52.632 3.35 0.00 46.93 3.35
290 291 1.372582 GCATCGTCCAAATGCAGAGA 58.627 50.000 3.35 0.00 46.93 3.10
291 292 1.063174 GCATCGTCCAAATGCAGAGAC 59.937 52.381 3.35 0.00 46.93 3.36
292 293 1.667724 CATCGTCCAAATGCAGAGACC 59.332 52.381 0.00 0.00 0.00 3.85
293 294 0.684535 TCGTCCAAATGCAGAGACCA 59.315 50.000 0.00 0.00 0.00 4.02
294 295 1.081892 CGTCCAAATGCAGAGACCAG 58.918 55.000 0.00 0.00 0.00 4.00
295 296 1.457346 GTCCAAATGCAGAGACCAGG 58.543 55.000 0.00 0.00 0.00 4.45
296 297 1.067295 TCCAAATGCAGAGACCAGGT 58.933 50.000 0.00 0.00 0.00 4.00
297 298 2.027192 GTCCAAATGCAGAGACCAGGTA 60.027 50.000 0.00 0.00 0.00 3.08
298 299 2.846206 TCCAAATGCAGAGACCAGGTAT 59.154 45.455 0.00 0.00 0.00 2.73
299 300 4.037222 TCCAAATGCAGAGACCAGGTATA 58.963 43.478 0.00 0.00 0.00 1.47
300 301 4.660303 TCCAAATGCAGAGACCAGGTATAT 59.340 41.667 0.00 0.00 0.00 0.86
301 302 4.999950 CCAAATGCAGAGACCAGGTATATC 59.000 45.833 0.00 0.00 0.00 1.63
302 303 4.899352 AATGCAGAGACCAGGTATATCC 57.101 45.455 0.00 0.00 0.00 2.59
304 305 3.501349 TGCAGAGACCAGGTATATCCTC 58.499 50.000 0.00 0.00 46.24 3.71
305 306 2.829120 GCAGAGACCAGGTATATCCTCC 59.171 54.545 0.00 0.00 46.24 4.30
306 307 3.501385 GCAGAGACCAGGTATATCCTCCT 60.501 52.174 0.00 0.00 46.24 3.69
307 308 4.263994 GCAGAGACCAGGTATATCCTCCTA 60.264 50.000 0.00 0.00 46.24 2.94
308 309 5.576822 GCAGAGACCAGGTATATCCTCCTAT 60.577 48.000 0.00 0.00 46.24 2.57
309 310 6.498538 CAGAGACCAGGTATATCCTCCTATT 58.501 44.000 0.00 0.00 46.24 1.73
310 311 6.605594 CAGAGACCAGGTATATCCTCCTATTC 59.394 46.154 0.00 0.00 46.24 1.75
311 312 6.278239 AGAGACCAGGTATATCCTCCTATTCA 59.722 42.308 0.00 0.00 46.24 2.57
312 313 6.875469 AGACCAGGTATATCCTCCTATTCAA 58.125 40.000 0.00 0.00 46.24 2.69
313 314 7.313731 AGACCAGGTATATCCTCCTATTCAAA 58.686 38.462 0.00 0.00 46.24 2.69
314 315 7.794683 AGACCAGGTATATCCTCCTATTCAAAA 59.205 37.037 0.00 0.00 46.24 2.44
315 316 8.344939 ACCAGGTATATCCTCCTATTCAAAAA 57.655 34.615 0.00 0.00 46.24 1.94
383 384 1.538849 CCAAAGCCAAACCAGACTTGC 60.539 52.381 0.00 0.00 0.00 4.01
386 387 0.538287 AGCCAAACCAGACTTGCTCC 60.538 55.000 0.00 0.00 0.00 4.70
387 388 0.823356 GCCAAACCAGACTTGCTCCA 60.823 55.000 0.00 0.00 0.00 3.86
388 389 1.691196 CCAAACCAGACTTGCTCCAA 58.309 50.000 0.00 0.00 0.00 3.53
391 392 3.447742 CAAACCAGACTTGCTCCAAAAC 58.552 45.455 0.00 0.00 0.00 2.43
392 393 1.308998 ACCAGACTTGCTCCAAAACG 58.691 50.000 0.00 0.00 0.00 3.60
393 394 1.134220 ACCAGACTTGCTCCAAAACGA 60.134 47.619 0.00 0.00 0.00 3.85
394 395 2.154462 CCAGACTTGCTCCAAAACGAT 58.846 47.619 0.00 0.00 0.00 3.73
395 396 2.095567 CCAGACTTGCTCCAAAACGATG 60.096 50.000 0.00 0.00 0.00 3.84
396 397 2.549754 CAGACTTGCTCCAAAACGATGT 59.450 45.455 0.00 0.00 0.00 3.06
397 398 2.808543 AGACTTGCTCCAAAACGATGTC 59.191 45.455 0.00 0.00 0.00 3.06
398 399 1.880027 ACTTGCTCCAAAACGATGTCC 59.120 47.619 0.00 0.00 0.00 4.02
399 400 2.154462 CTTGCTCCAAAACGATGTCCT 58.846 47.619 0.00 0.00 0.00 3.85
400 401 3.244422 ACTTGCTCCAAAACGATGTCCTA 60.244 43.478 0.00 0.00 0.00 2.94
401 402 2.972625 TGCTCCAAAACGATGTCCTAG 58.027 47.619 0.00 0.00 0.00 3.02
402 403 2.280628 GCTCCAAAACGATGTCCTAGG 58.719 52.381 0.82 0.82 0.00 3.02
403 404 2.093658 GCTCCAAAACGATGTCCTAGGA 60.094 50.000 7.62 7.62 0.00 2.94
404 405 3.786635 CTCCAAAACGATGTCCTAGGAG 58.213 50.000 13.15 2.52 35.90 3.69
405 406 2.500098 TCCAAAACGATGTCCTAGGAGG 59.500 50.000 13.15 6.65 36.46 4.30
406 407 2.420129 CCAAAACGATGTCCTAGGAGGG 60.420 54.545 13.15 4.22 35.59 4.30
407 408 2.500098 CAAAACGATGTCCTAGGAGGGA 59.500 50.000 13.15 0.00 35.59 4.20
408 409 2.777459 AACGATGTCCTAGGAGGGAT 57.223 50.000 13.15 4.54 37.73 3.85
409 410 3.897657 AACGATGTCCTAGGAGGGATA 57.102 47.619 13.15 0.00 37.73 2.59
410 411 3.897657 ACGATGTCCTAGGAGGGATAA 57.102 47.619 13.15 0.00 37.73 1.75
411 412 3.498334 ACGATGTCCTAGGAGGGATAAC 58.502 50.000 13.15 0.00 37.73 1.89
412 413 2.488545 CGATGTCCTAGGAGGGATAACG 59.511 54.545 13.15 7.75 36.75 3.18
413 414 2.376695 TGTCCTAGGAGGGATAACGG 57.623 55.000 13.15 0.00 37.73 4.44
414 415 0.967662 GTCCTAGGAGGGATAACGGC 59.032 60.000 13.15 0.00 37.73 5.68
415 416 0.559205 TCCTAGGAGGGATAACGGCA 59.441 55.000 7.62 0.00 35.59 5.69
416 417 1.149288 TCCTAGGAGGGATAACGGCAT 59.851 52.381 7.62 0.00 35.59 4.40
417 418 1.550976 CCTAGGAGGGATAACGGCATC 59.449 57.143 1.05 0.00 0.00 3.91
418 419 1.202582 CTAGGAGGGATAACGGCATCG 59.797 57.143 0.00 0.00 43.02 3.84
419 420 0.469331 AGGAGGGATAACGGCATCGA 60.469 55.000 0.00 0.00 40.11 3.59
420 421 0.391597 GGAGGGATAACGGCATCGAA 59.608 55.000 0.00 0.00 40.11 3.71
421 422 1.605712 GGAGGGATAACGGCATCGAAG 60.606 57.143 0.00 0.00 40.11 3.79
422 423 0.393077 AGGGATAACGGCATCGAAGG 59.607 55.000 0.00 0.00 40.11 3.46
423 424 0.106149 GGGATAACGGCATCGAAGGT 59.894 55.000 0.00 0.00 40.11 3.50
424 425 1.217882 GGATAACGGCATCGAAGGTG 58.782 55.000 0.00 0.00 40.11 4.00
425 426 0.582005 GATAACGGCATCGAAGGTGC 59.418 55.000 0.73 0.73 41.78 5.01
430 431 4.223800 GCATCGAAGGTGCCATCA 57.776 55.556 0.00 0.00 36.61 3.07
434 435 0.839277 ATCGAAGGTGCCATCATCCA 59.161 50.000 0.00 0.00 0.00 3.41
440 441 0.034186 GGTGCCATCATCCACTTCCA 60.034 55.000 0.00 0.00 32.68 3.53
456 457 4.155826 CACTTCCAATGCTTCGGAACAATA 59.844 41.667 0.00 0.00 36.36 1.90
457 458 4.764823 ACTTCCAATGCTTCGGAACAATAA 59.235 37.500 0.00 0.00 36.36 1.40
463 464 9.126151 TCCAATGCTTCGGAACAATAATATAAA 57.874 29.630 0.00 0.00 0.00 1.40
464 465 9.180678 CCAATGCTTCGGAACAATAATATAAAC 57.819 33.333 0.00 0.00 0.00 2.01
465 466 9.729023 CAATGCTTCGGAACAATAATATAAACA 57.271 29.630 0.00 0.00 0.00 2.83
468 469 9.337396 TGCTTCGGAACAATAATATAAACATCT 57.663 29.630 0.00 0.00 0.00 2.90
469 470 9.599322 GCTTCGGAACAATAATATAAACATCTG 57.401 33.333 0.00 0.00 0.00 2.90
470 471 9.599322 CTTCGGAACAATAATATAAACATCTGC 57.401 33.333 0.00 0.00 0.00 4.26
471 472 8.669946 TCGGAACAATAATATAAACATCTGCA 57.330 30.769 0.00 0.00 0.00 4.41
472 473 9.283768 TCGGAACAATAATATAAACATCTGCAT 57.716 29.630 0.00 0.00 0.00 3.96
473 474 9.333497 CGGAACAATAATATAAACATCTGCATG 57.667 33.333 0.00 0.00 35.92 4.06
481 482 8.757982 AATATAAACATCTGCATGAAGAACCT 57.242 30.769 7.69 0.00 33.72 3.50
482 483 4.778534 AAACATCTGCATGAAGAACCTG 57.221 40.909 7.69 4.27 33.72 4.00
483 484 2.719739 ACATCTGCATGAAGAACCTGG 58.280 47.619 7.69 0.00 33.72 4.45
484 485 1.404391 CATCTGCATGAAGAACCTGGC 59.596 52.381 7.69 0.00 30.57 4.85
485 486 0.322816 TCTGCATGAAGAACCTGGCC 60.323 55.000 0.00 0.00 0.00 5.36
486 487 1.304381 TGCATGAAGAACCTGGCCC 60.304 57.895 0.00 0.00 0.00 5.80
487 488 2.054453 GCATGAAGAACCTGGCCCC 61.054 63.158 0.00 0.00 0.00 5.80
488 489 1.750399 CATGAAGAACCTGGCCCCG 60.750 63.158 0.00 0.00 0.00 5.73
489 490 2.231380 ATGAAGAACCTGGCCCCGT 61.231 57.895 0.00 0.00 0.00 5.28
490 491 0.912487 ATGAAGAACCTGGCCCCGTA 60.912 55.000 0.00 0.00 0.00 4.02
491 492 1.128809 TGAAGAACCTGGCCCCGTAA 61.129 55.000 0.00 0.00 0.00 3.18
492 493 0.037160 GAAGAACCTGGCCCCGTAAA 59.963 55.000 0.00 0.00 0.00 2.01
493 494 0.479378 AAGAACCTGGCCCCGTAAAA 59.521 50.000 0.00 0.00 0.00 1.52
494 495 0.479378 AGAACCTGGCCCCGTAAAAA 59.521 50.000 0.00 0.00 0.00 1.94
495 496 0.885879 GAACCTGGCCCCGTAAAAAG 59.114 55.000 0.00 0.00 0.00 2.27
496 497 0.479378 AACCTGGCCCCGTAAAAAGA 59.521 50.000 0.00 0.00 0.00 2.52
497 498 0.479378 ACCTGGCCCCGTAAAAAGAA 59.521 50.000 0.00 0.00 0.00 2.52
498 499 1.133419 ACCTGGCCCCGTAAAAAGAAA 60.133 47.619 0.00 0.00 0.00 2.52
499 500 1.964933 CCTGGCCCCGTAAAAAGAAAA 59.035 47.619 0.00 0.00 0.00 2.29
500 501 2.365941 CCTGGCCCCGTAAAAAGAAAAA 59.634 45.455 0.00 0.00 0.00 1.94
501 502 3.386486 CTGGCCCCGTAAAAAGAAAAAC 58.614 45.455 0.00 0.00 0.00 2.43
583 584 1.060163 AGTTGTCCATATCCCGGGGG 61.060 60.000 23.50 14.57 0.00 5.40
822 997 3.068729 GCCCTGGTCCGTACGTACC 62.069 68.421 21.94 21.94 36.24 3.34
824 999 1.660560 CCCTGGTCCGTACGTACCTG 61.661 65.000 27.40 25.63 36.67 4.00
826 1001 1.678728 CCTGGTCCGTACGTACCTGTA 60.679 57.143 27.40 9.60 36.67 2.74
869 1054 2.543848 ACGCATACAATTCTACGCATGG 59.456 45.455 0.00 0.00 0.00 3.66
887 1072 3.325293 TGGAAGTTCTGAAGCTAGCTG 57.675 47.619 20.16 6.06 0.00 4.24
1008 1210 2.230266 TCAACCGATCACGATGAGTTCA 59.770 45.455 0.00 0.00 42.66 3.18
1089 1291 4.162690 ATCCTCCGCGACAAGCCC 62.163 66.667 8.23 0.00 44.76 5.19
1124 1326 3.470888 CCTTCCCGTCGGCTCCAT 61.471 66.667 5.50 0.00 0.00 3.41
1126 1328 3.774959 CTTCCCGTCGGCTCCATCG 62.775 68.421 5.50 0.00 0.00 3.84
1132 1334 3.872728 TCGGCTCCATCGTCGACG 61.873 66.667 31.30 31.30 41.45 5.12
1165 1367 3.583276 AACCGCGTCCGCATCTTCA 62.583 57.895 12.58 0.00 42.06 3.02
1436 1670 7.707035 TGTATTTGGCGTCAAGTTATTGTTTTT 59.293 29.630 2.20 0.00 37.68 1.94
1479 1718 9.532494 ACTGCTCTATATGAGACTCTTTCATAT 57.468 33.333 3.68 11.25 45.46 1.78
1545 1819 1.604278 GAATTGCCTGACCCTATTCGC 59.396 52.381 0.00 0.00 0.00 4.70
1572 1846 9.974980 GAGTTTGGATTTTGGTTTTACTGATTA 57.025 29.630 0.00 0.00 0.00 1.75
1863 2142 3.881688 TCGAAAAGGAGACGGGTAGATAG 59.118 47.826 0.00 0.00 0.00 2.08
1872 2151 6.441604 AGGAGACGGGTAGATAGGTTTAAAAA 59.558 38.462 0.00 0.00 0.00 1.94
1916 2196 3.866883 ATTTTGCCCCATCAACTTACG 57.133 42.857 0.00 0.00 0.00 3.18
1918 2198 0.693622 TTGCCCCATCAACTTACGGA 59.306 50.000 0.00 0.00 0.00 4.69
1989 2303 8.567948 ACAGTACAACTAAATGAGTTCAAATGG 58.432 33.333 0.00 0.00 45.81 3.16
2052 2377 4.623932 TTCTCTGGTTGTTCAGCATACT 57.376 40.909 0.00 0.00 34.91 2.12
2061 2386 5.335661 GGTTGTTCAGCATACTTACCAAAGG 60.336 44.000 0.00 0.00 37.01 3.11
2076 2401 8.493607 ACTTACCAAAGGTAACCTACTTAAACA 58.506 33.333 4.59 0.00 42.44 2.83
2105 2430 9.362151 GGTGGAATGGAATTATGGAAATAAGTA 57.638 33.333 0.00 0.00 36.07 2.24
2138 2463 7.979444 TTTGTGGTCAAAATTAAACAAACCA 57.021 28.000 0.00 0.00 40.08 3.67
2141 2466 7.560368 TGTGGTCAAAATTAAACAAACCATCT 58.440 30.769 0.00 0.00 37.61 2.90
2180 2505 6.402766 CCGGTTCGCAAATTTATCTTGAGTAA 60.403 38.462 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.215647 AGGAACTGACGCATCGACC 59.784 57.895 0.00 0.00 37.18 4.79
1 2 4.891566 AGGAACTGACGCATCGAC 57.108 55.556 0.00 0.00 37.18 4.20
12 13 1.202330 CCATCTCCAGAGCAGGAACT 58.798 55.000 0.00 0.00 43.88 3.01
13 14 1.134551 GTCCATCTCCAGAGCAGGAAC 60.135 57.143 8.80 2.65 37.20 3.62
14 15 1.198713 GTCCATCTCCAGAGCAGGAA 58.801 55.000 8.80 0.00 37.20 3.36
15 16 0.689080 GGTCCATCTCCAGAGCAGGA 60.689 60.000 4.42 4.42 36.00 3.86
16 17 0.979709 TGGTCCATCTCCAGAGCAGG 60.980 60.000 0.00 0.00 35.69 4.85
17 18 2.600439 TGGTCCATCTCCAGAGCAG 58.400 57.895 0.00 0.00 35.69 4.24
18 19 4.894719 TGGTCCATCTCCAGAGCA 57.105 55.556 0.00 0.00 38.12 4.26
23 24 1.206878 CATCCACTGGTCCATCTCCA 58.793 55.000 0.00 0.00 0.00 3.86
24 25 1.500474 TCATCCACTGGTCCATCTCC 58.500 55.000 0.00 0.00 0.00 3.71
25 26 2.224475 CCATCATCCACTGGTCCATCTC 60.224 54.545 0.00 0.00 0.00 2.75
26 27 1.773052 CCATCATCCACTGGTCCATCT 59.227 52.381 0.00 0.00 0.00 2.90
27 28 1.816961 GCCATCATCCACTGGTCCATC 60.817 57.143 0.00 0.00 34.86 3.51
28 29 0.184451 GCCATCATCCACTGGTCCAT 59.816 55.000 0.00 0.00 34.86 3.41
29 30 1.609239 GCCATCATCCACTGGTCCA 59.391 57.895 0.00 0.00 34.86 4.02
30 31 1.524621 CGCCATCATCCACTGGTCC 60.525 63.158 0.00 0.00 34.86 4.46
31 32 1.524621 CCGCCATCATCCACTGGTC 60.525 63.158 0.00 0.00 34.86 4.02
32 33 2.591753 CCGCCATCATCCACTGGT 59.408 61.111 0.00 0.00 34.86 4.00
33 34 2.203252 CCCGCCATCATCCACTGG 60.203 66.667 0.00 0.00 35.53 4.00
34 35 2.203252 CCCCGCCATCATCCACTG 60.203 66.667 0.00 0.00 0.00 3.66
35 36 2.692368 ACCCCGCCATCATCCACT 60.692 61.111 0.00 0.00 0.00 4.00
36 37 2.203209 GACCCCGCCATCATCCAC 60.203 66.667 0.00 0.00 0.00 4.02
37 38 2.690510 TGACCCCGCCATCATCCA 60.691 61.111 0.00 0.00 0.00 3.41
38 39 2.111878 CTGACCCCGCCATCATCC 59.888 66.667 0.00 0.00 0.00 3.51
39 40 2.592861 GCTGACCCCGCCATCATC 60.593 66.667 0.00 0.00 0.00 2.92
40 41 4.195334 GGCTGACCCCGCCATCAT 62.195 66.667 0.00 0.00 46.77 2.45
46 47 4.154347 CTCAGAGGCTGACCCCGC 62.154 72.222 0.00 0.00 35.39 6.13
47 48 2.363018 TCTCAGAGGCTGACCCCG 60.363 66.667 0.00 0.00 35.39 5.73
48 49 1.305718 ACTCTCAGAGGCTGACCCC 60.306 63.158 6.64 0.00 35.39 4.95
49 50 1.896694 CACTCTCAGAGGCTGACCC 59.103 63.158 6.64 0.00 35.39 4.46
50 51 1.217779 GCACTCTCAGAGGCTGACC 59.782 63.158 6.64 0.00 35.39 4.02
51 52 1.153862 CGCACTCTCAGAGGCTGAC 60.154 63.158 6.64 0.00 35.39 3.51
52 53 2.999485 GCGCACTCTCAGAGGCTGA 61.999 63.158 6.64 0.00 38.25 4.26
53 54 2.508887 GCGCACTCTCAGAGGCTG 60.509 66.667 6.64 0.00 33.35 4.85
54 55 3.768922 GGCGCACTCTCAGAGGCT 61.769 66.667 10.83 0.00 33.35 4.58
55 56 4.074526 TGGCGCACTCTCAGAGGC 62.075 66.667 10.83 5.87 33.35 4.70
56 57 2.183811 CTGGCGCACTCTCAGAGG 59.816 66.667 10.83 0.00 33.35 3.69
57 58 1.153862 GTCTGGCGCACTCTCAGAG 60.154 63.158 10.83 0.00 38.09 3.35
58 59 2.640302 GGTCTGGCGCACTCTCAGA 61.640 63.158 10.83 9.69 35.45 3.27
59 60 2.125753 GGTCTGGCGCACTCTCAG 60.126 66.667 10.83 7.04 0.00 3.35
60 61 4.056125 CGGTCTGGCGCACTCTCA 62.056 66.667 10.83 0.00 0.00 3.27
61 62 4.803426 CCGGTCTGGCGCACTCTC 62.803 72.222 10.83 0.00 0.00 3.20
69 70 4.699522 GTCCCACACCGGTCTGGC 62.700 72.222 22.59 7.05 43.94 4.85
70 71 4.016706 GGTCCCACACCGGTCTGG 62.017 72.222 21.21 21.21 46.41 3.86
84 85 1.071471 CACACACTGGGACTGGGTC 59.929 63.158 0.00 0.00 40.91 4.46
86 87 2.431683 CCACACACTGGGACTGGG 59.568 66.667 0.00 0.00 36.18 4.45
87 88 2.281761 GCCACACACTGGGACTGG 60.282 66.667 0.00 0.00 41.02 4.00
88 89 1.598962 CAGCCACACACTGGGACTG 60.599 63.158 0.00 0.00 41.02 3.51
89 90 2.831770 CAGCCACACACTGGGACT 59.168 61.111 0.00 0.00 41.02 3.85
94 95 1.376424 CTAGCCCAGCCACACACTG 60.376 63.158 0.00 0.00 34.82 3.66
95 96 2.596851 CCTAGCCCAGCCACACACT 61.597 63.158 0.00 0.00 0.00 3.55
96 97 2.045926 CCTAGCCCAGCCACACAC 60.046 66.667 0.00 0.00 0.00 3.82
97 98 3.329889 CCCTAGCCCAGCCACACA 61.330 66.667 0.00 0.00 0.00 3.72
98 99 4.803908 GCCCTAGCCCAGCCACAC 62.804 72.222 0.00 0.00 0.00 3.82
100 101 3.781605 GATGCCCTAGCCCAGCCAC 62.782 68.421 0.00 0.00 38.69 5.01
101 102 3.492353 GATGCCCTAGCCCAGCCA 61.492 66.667 0.00 0.00 38.69 4.75
102 103 4.277009 GGATGCCCTAGCCCAGCC 62.277 72.222 0.30 0.30 38.69 4.85
103 104 3.174265 AGGATGCCCTAGCCCAGC 61.174 66.667 0.00 0.00 42.15 4.85
104 105 2.834688 CAGGATGCCCTAGCCCAG 59.165 66.667 0.00 0.00 42.02 4.45
115 116 7.255590 CCAAACCCTAACATTTATAGCAGGATG 60.256 40.741 0.00 0.00 40.87 3.51
116 117 6.777580 CCAAACCCTAACATTTATAGCAGGAT 59.222 38.462 0.00 0.00 0.00 3.24
117 118 6.126409 CCAAACCCTAACATTTATAGCAGGA 58.874 40.000 0.00 0.00 0.00 3.86
118 119 5.891551 ACCAAACCCTAACATTTATAGCAGG 59.108 40.000 0.00 0.00 0.00 4.85
119 120 6.680378 GCACCAAACCCTAACATTTATAGCAG 60.680 42.308 0.00 0.00 0.00 4.24
120 121 5.126384 GCACCAAACCCTAACATTTATAGCA 59.874 40.000 0.00 0.00 0.00 3.49
121 122 5.588240 GCACCAAACCCTAACATTTATAGC 58.412 41.667 0.00 0.00 0.00 2.97
122 123 5.220970 CCGCACCAAACCCTAACATTTATAG 60.221 44.000 0.00 0.00 0.00 1.31
123 124 4.641094 CCGCACCAAACCCTAACATTTATA 59.359 41.667 0.00 0.00 0.00 0.98
124 125 3.445805 CCGCACCAAACCCTAACATTTAT 59.554 43.478 0.00 0.00 0.00 1.40
125 126 2.820787 CCGCACCAAACCCTAACATTTA 59.179 45.455 0.00 0.00 0.00 1.40
126 127 1.616374 CCGCACCAAACCCTAACATTT 59.384 47.619 0.00 0.00 0.00 2.32
127 128 1.253100 CCGCACCAAACCCTAACATT 58.747 50.000 0.00 0.00 0.00 2.71
128 129 0.111639 ACCGCACCAAACCCTAACAT 59.888 50.000 0.00 0.00 0.00 2.71
129 130 0.820074 CACCGCACCAAACCCTAACA 60.820 55.000 0.00 0.00 0.00 2.41
130 131 0.820482 ACACCGCACCAAACCCTAAC 60.820 55.000 0.00 0.00 0.00 2.34
131 132 0.535553 GACACCGCACCAAACCCTAA 60.536 55.000 0.00 0.00 0.00 2.69
132 133 1.071814 GACACCGCACCAAACCCTA 59.928 57.895 0.00 0.00 0.00 3.53
133 134 2.203294 GACACCGCACCAAACCCT 60.203 61.111 0.00 0.00 0.00 4.34
134 135 2.203294 AGACACCGCACCAAACCC 60.203 61.111 0.00 0.00 0.00 4.11
135 136 1.381165 AACAGACACCGCACCAAACC 61.381 55.000 0.00 0.00 0.00 3.27
136 137 0.454196 AAACAGACACCGCACCAAAC 59.546 50.000 0.00 0.00 0.00 2.93
137 138 0.453793 CAAACAGACACCGCACCAAA 59.546 50.000 0.00 0.00 0.00 3.28
138 139 1.380403 CCAAACAGACACCGCACCAA 61.380 55.000 0.00 0.00 0.00 3.67
139 140 1.821759 CCAAACAGACACCGCACCA 60.822 57.895 0.00 0.00 0.00 4.17
140 141 0.533308 TACCAAACAGACACCGCACC 60.533 55.000 0.00 0.00 0.00 5.01
141 142 1.519408 ATACCAAACAGACACCGCAC 58.481 50.000 0.00 0.00 0.00 5.34
142 143 2.264005 AATACCAAACAGACACCGCA 57.736 45.000 0.00 0.00 0.00 5.69
143 144 2.676342 CCTAATACCAAACAGACACCGC 59.324 50.000 0.00 0.00 0.00 5.68
144 145 3.930848 GACCTAATACCAAACAGACACCG 59.069 47.826 0.00 0.00 0.00 4.94
145 146 4.259356 GGACCTAATACCAAACAGACACC 58.741 47.826 0.00 0.00 0.00 4.16
146 147 3.930848 CGGACCTAATACCAAACAGACAC 59.069 47.826 0.00 0.00 0.00 3.67
147 148 3.055675 CCGGACCTAATACCAAACAGACA 60.056 47.826 0.00 0.00 0.00 3.41
148 149 3.196254 TCCGGACCTAATACCAAACAGAC 59.804 47.826 0.00 0.00 0.00 3.51
149 150 3.443052 TCCGGACCTAATACCAAACAGA 58.557 45.455 0.00 0.00 0.00 3.41
150 151 3.899052 TCCGGACCTAATACCAAACAG 57.101 47.619 0.00 0.00 0.00 3.16
151 152 5.954153 TTATCCGGACCTAATACCAAACA 57.046 39.130 6.12 0.00 0.00 2.83
152 153 5.636543 CGATTATCCGGACCTAATACCAAAC 59.363 44.000 6.12 0.00 0.00 2.93
153 154 5.786311 CGATTATCCGGACCTAATACCAAA 58.214 41.667 6.12 0.00 0.00 3.28
154 155 5.395682 CGATTATCCGGACCTAATACCAA 57.604 43.478 6.12 0.00 0.00 3.67
167 168 2.754472 TGAAGATGTGCCGATTATCCG 58.246 47.619 0.00 0.00 0.00 4.18
168 169 4.318332 TGATGAAGATGTGCCGATTATCC 58.682 43.478 0.00 0.00 0.00 2.59
169 170 5.468072 ACTTGATGAAGATGTGCCGATTATC 59.532 40.000 0.00 0.00 32.98 1.75
170 171 5.237996 CACTTGATGAAGATGTGCCGATTAT 59.762 40.000 0.00 0.00 32.98 1.28
171 172 4.571984 CACTTGATGAAGATGTGCCGATTA 59.428 41.667 0.00 0.00 32.98 1.75
172 173 3.376234 CACTTGATGAAGATGTGCCGATT 59.624 43.478 0.00 0.00 32.98 3.34
173 174 2.941064 CACTTGATGAAGATGTGCCGAT 59.059 45.455 0.00 0.00 32.98 4.18
174 175 2.349590 CACTTGATGAAGATGTGCCGA 58.650 47.619 0.00 0.00 32.98 5.54
175 176 1.399440 CCACTTGATGAAGATGTGCCG 59.601 52.381 0.00 0.00 32.98 5.69
176 177 2.715046 TCCACTTGATGAAGATGTGCC 58.285 47.619 0.00 0.00 32.98 5.01
177 178 4.514441 CCTATCCACTTGATGAAGATGTGC 59.486 45.833 0.00 0.00 34.76 4.57
178 179 5.922053 TCCTATCCACTTGATGAAGATGTG 58.078 41.667 0.00 0.00 34.76 3.21
179 180 5.664908 ACTCCTATCCACTTGATGAAGATGT 59.335 40.000 0.00 0.00 34.76 3.06
180 181 6.172136 ACTCCTATCCACTTGATGAAGATG 57.828 41.667 0.00 0.00 34.76 2.90
181 182 6.014669 GCTACTCCTATCCACTTGATGAAGAT 60.015 42.308 0.00 0.00 34.76 2.40
182 183 5.303078 GCTACTCCTATCCACTTGATGAAGA 59.697 44.000 0.00 0.00 34.76 2.87
183 184 5.069648 TGCTACTCCTATCCACTTGATGAAG 59.930 44.000 0.00 0.00 34.76 3.02
184 185 4.962362 TGCTACTCCTATCCACTTGATGAA 59.038 41.667 0.00 0.00 34.76 2.57
185 186 4.546674 TGCTACTCCTATCCACTTGATGA 58.453 43.478 0.00 0.00 34.76 2.92
186 187 4.944619 TGCTACTCCTATCCACTTGATG 57.055 45.455 0.00 0.00 34.76 3.07
187 188 4.716784 TGTTGCTACTCCTATCCACTTGAT 59.283 41.667 0.00 0.00 37.49 2.57
188 189 4.093743 TGTTGCTACTCCTATCCACTTGA 58.906 43.478 0.00 0.00 0.00 3.02
189 190 4.471904 TGTTGCTACTCCTATCCACTTG 57.528 45.455 0.00 0.00 0.00 3.16
190 191 4.471386 ACATGTTGCTACTCCTATCCACTT 59.529 41.667 0.00 0.00 0.00 3.16
191 192 4.033709 ACATGTTGCTACTCCTATCCACT 58.966 43.478 0.00 0.00 0.00 4.00
192 193 4.122776 CACATGTTGCTACTCCTATCCAC 58.877 47.826 0.00 0.00 0.00 4.02
193 194 4.406648 CACATGTTGCTACTCCTATCCA 57.593 45.455 0.00 0.00 0.00 3.41
206 207 5.484173 AATACATTAGTCCGCACATGTTG 57.516 39.130 0.00 0.00 32.15 3.33
207 208 6.346096 AGTAATACATTAGTCCGCACATGTT 58.654 36.000 0.00 0.00 32.15 2.71
208 209 5.914033 AGTAATACATTAGTCCGCACATGT 58.086 37.500 0.00 0.00 34.27 3.21
209 210 6.844696 AAGTAATACATTAGTCCGCACATG 57.155 37.500 0.00 0.00 0.00 3.21
210 211 6.821665 ACAAAGTAATACATTAGTCCGCACAT 59.178 34.615 0.00 0.00 0.00 3.21
211 212 6.167685 ACAAAGTAATACATTAGTCCGCACA 58.832 36.000 0.00 0.00 0.00 4.57
212 213 6.657836 ACAAAGTAATACATTAGTCCGCAC 57.342 37.500 0.00 0.00 0.00 5.34
213 214 6.473131 CGTACAAAGTAATACATTAGTCCGCA 59.527 38.462 0.00 0.00 0.00 5.69
214 215 6.074676 CCGTACAAAGTAATACATTAGTCCGC 60.075 42.308 0.00 0.00 0.00 5.54
215 216 6.974622 ACCGTACAAAGTAATACATTAGTCCG 59.025 38.462 0.00 0.00 0.00 4.79
216 217 9.971922 ATACCGTACAAAGTAATACATTAGTCC 57.028 33.333 0.00 0.00 0.00 3.85
222 223 9.656040 TCACAAATACCGTACAAAGTAATACAT 57.344 29.630 0.00 0.00 0.00 2.29
223 224 9.486497 TTCACAAATACCGTACAAAGTAATACA 57.514 29.630 0.00 0.00 0.00 2.29
243 244 9.881649 TGCAGCCATTTTATTAATTATTCACAA 57.118 25.926 0.00 0.00 0.00 3.33
246 247 8.991026 GCATGCAGCCATTTTATTAATTATTCA 58.009 29.630 14.21 0.00 37.23 2.57
247 248 8.991026 TGCATGCAGCCATTTTATTAATTATTC 58.009 29.630 18.46 0.00 44.83 1.75
248 249 8.905660 TGCATGCAGCCATTTTATTAATTATT 57.094 26.923 18.46 0.00 44.83 1.40
249 250 9.158233 GATGCATGCAGCCATTTTATTAATTAT 57.842 29.630 25.21 0.54 44.83 1.28
250 251 7.328982 CGATGCATGCAGCCATTTTATTAATTA 59.671 33.333 28.76 0.00 44.83 1.40
251 252 6.146510 CGATGCATGCAGCCATTTTATTAATT 59.853 34.615 28.76 4.60 44.83 1.40
252 253 5.636121 CGATGCATGCAGCCATTTTATTAAT 59.364 36.000 28.76 5.31 44.83 1.40
253 254 4.983538 CGATGCATGCAGCCATTTTATTAA 59.016 37.500 28.76 0.00 44.83 1.40
254 255 4.037803 ACGATGCATGCAGCCATTTTATTA 59.962 37.500 28.76 0.00 44.83 0.98
255 256 3.181473 ACGATGCATGCAGCCATTTTATT 60.181 39.130 28.76 6.59 44.83 1.40
256 257 2.363038 ACGATGCATGCAGCCATTTTAT 59.637 40.909 28.76 7.39 44.83 1.40
257 258 1.750206 ACGATGCATGCAGCCATTTTA 59.250 42.857 28.76 0.09 44.83 1.52
258 259 0.533491 ACGATGCATGCAGCCATTTT 59.467 45.000 28.76 9.02 44.83 1.82
259 260 0.101759 GACGATGCATGCAGCCATTT 59.898 50.000 28.76 9.83 44.83 2.32
260 261 1.731433 GGACGATGCATGCAGCCATT 61.731 55.000 28.76 14.28 44.83 3.16
261 262 2.191513 GGACGATGCATGCAGCCAT 61.192 57.895 28.76 18.07 44.83 4.40
262 263 2.825387 GGACGATGCATGCAGCCA 60.825 61.111 28.76 3.84 44.83 4.75
263 264 1.936436 TTTGGACGATGCATGCAGCC 61.936 55.000 28.76 23.21 44.83 4.85
264 265 0.101759 ATTTGGACGATGCATGCAGC 59.898 50.000 25.69 25.69 45.96 5.25
265 266 1.835121 CATTTGGACGATGCATGCAG 58.165 50.000 26.69 15.79 0.00 4.41
266 267 0.179132 GCATTTGGACGATGCATGCA 60.179 50.000 25.04 25.04 46.96 3.96
267 268 2.585263 GCATTTGGACGATGCATGC 58.415 52.632 11.82 11.82 46.96 4.06
272 273 1.667724 GGTCTCTGCATTTGGACGATG 59.332 52.381 0.00 0.00 0.00 3.84
273 274 1.278985 TGGTCTCTGCATTTGGACGAT 59.721 47.619 0.00 0.00 0.00 3.73
274 275 0.684535 TGGTCTCTGCATTTGGACGA 59.315 50.000 0.00 0.00 0.00 4.20
275 276 1.081892 CTGGTCTCTGCATTTGGACG 58.918 55.000 0.00 0.00 0.00 4.79
276 277 1.271597 ACCTGGTCTCTGCATTTGGAC 60.272 52.381 0.00 0.00 0.00 4.02
277 278 1.067295 ACCTGGTCTCTGCATTTGGA 58.933 50.000 0.00 0.00 0.00 3.53
278 279 2.787473 TACCTGGTCTCTGCATTTGG 57.213 50.000 0.63 0.00 0.00 3.28
279 280 4.999950 GGATATACCTGGTCTCTGCATTTG 59.000 45.833 0.63 0.00 35.41 2.32
280 281 5.234466 GGATATACCTGGTCTCTGCATTT 57.766 43.478 0.63 0.00 35.41 2.32
281 282 4.899352 GGATATACCTGGTCTCTGCATT 57.101 45.455 0.63 0.00 35.41 3.56
315 316 9.903682 CAATTCATATTGAGACAGACACTTTTT 57.096 29.630 0.00 0.00 43.12 1.94
318 319 6.094603 GCCAATTCATATTGAGACAGACACTT 59.905 38.462 0.00 0.00 43.12 3.16
321 322 5.499313 TGCCAATTCATATTGAGACAGACA 58.501 37.500 0.00 0.00 43.12 3.41
376 377 2.808543 GACATCGTTTTGGAGCAAGTCT 59.191 45.455 0.00 0.00 0.00 3.24
377 378 2.095718 GGACATCGTTTTGGAGCAAGTC 60.096 50.000 0.00 0.00 0.00 3.01
378 379 1.880027 GGACATCGTTTTGGAGCAAGT 59.120 47.619 0.00 0.00 0.00 3.16
383 384 3.430929 CCTCCTAGGACATCGTTTTGGAG 60.431 52.174 7.62 0.00 37.67 3.86
386 387 2.500098 TCCCTCCTAGGACATCGTTTTG 59.500 50.000 7.62 0.00 37.67 2.44
387 388 2.829023 TCCCTCCTAGGACATCGTTTT 58.171 47.619 7.62 0.00 37.67 2.43
388 389 2.544844 TCCCTCCTAGGACATCGTTT 57.455 50.000 7.62 0.00 37.67 3.60
391 392 2.488545 CGTTATCCCTCCTAGGACATCG 59.511 54.545 7.62 0.00 39.24 3.84
392 393 2.826725 CCGTTATCCCTCCTAGGACATC 59.173 54.545 7.62 0.00 39.24 3.06
393 394 2.890814 CCGTTATCCCTCCTAGGACAT 58.109 52.381 7.62 2.89 39.24 3.06
394 395 1.756690 GCCGTTATCCCTCCTAGGACA 60.757 57.143 7.62 0.00 39.24 4.02
395 396 0.967662 GCCGTTATCCCTCCTAGGAC 59.032 60.000 7.62 0.00 39.24 3.85
396 397 0.559205 TGCCGTTATCCCTCCTAGGA 59.441 55.000 11.98 11.98 37.67 2.94
397 398 1.550976 GATGCCGTTATCCCTCCTAGG 59.449 57.143 0.82 0.82 34.30 3.02
398 399 1.202582 CGATGCCGTTATCCCTCCTAG 59.797 57.143 0.00 0.00 0.00 3.02
399 400 1.202964 TCGATGCCGTTATCCCTCCTA 60.203 52.381 0.00 0.00 37.05 2.94
400 401 0.469331 TCGATGCCGTTATCCCTCCT 60.469 55.000 0.00 0.00 37.05 3.69
401 402 0.391597 TTCGATGCCGTTATCCCTCC 59.608 55.000 0.00 0.00 37.05 4.30
402 403 1.605712 CCTTCGATGCCGTTATCCCTC 60.606 57.143 0.00 0.00 37.05 4.30
403 404 0.393077 CCTTCGATGCCGTTATCCCT 59.607 55.000 0.00 0.00 37.05 4.20
404 405 0.106149 ACCTTCGATGCCGTTATCCC 59.894 55.000 0.00 0.00 37.05 3.85
405 406 1.217882 CACCTTCGATGCCGTTATCC 58.782 55.000 0.00 0.00 37.05 2.59
406 407 0.582005 GCACCTTCGATGCCGTTATC 59.418 55.000 0.00 0.00 37.08 1.75
407 408 2.690326 GCACCTTCGATGCCGTTAT 58.310 52.632 0.00 0.00 37.08 1.89
408 409 4.195308 GCACCTTCGATGCCGTTA 57.805 55.556 0.00 0.00 37.08 3.18
413 414 0.590195 GATGATGGCACCTTCGATGC 59.410 55.000 0.73 0.73 42.62 3.91
414 415 1.233019 GGATGATGGCACCTTCGATG 58.767 55.000 0.00 0.00 0.00 3.84
415 416 0.839277 TGGATGATGGCACCTTCGAT 59.161 50.000 0.00 0.00 0.00 3.59
416 417 0.107703 GTGGATGATGGCACCTTCGA 60.108 55.000 0.00 0.00 0.00 3.71
417 418 0.107508 AGTGGATGATGGCACCTTCG 60.108 55.000 0.00 0.00 0.00 3.79
418 419 2.019984 GAAGTGGATGATGGCACCTTC 58.980 52.381 0.00 0.00 0.00 3.46
419 420 1.341383 GGAAGTGGATGATGGCACCTT 60.341 52.381 0.00 0.00 0.00 3.50
420 421 0.257039 GGAAGTGGATGATGGCACCT 59.743 55.000 0.00 0.00 0.00 4.00
421 422 0.034186 TGGAAGTGGATGATGGCACC 60.034 55.000 0.00 0.00 0.00 5.01
422 423 1.838112 TTGGAAGTGGATGATGGCAC 58.162 50.000 0.00 0.00 0.00 5.01
423 424 2.380941 CATTGGAAGTGGATGATGGCA 58.619 47.619 0.00 0.00 0.00 4.92
424 425 1.068127 GCATTGGAAGTGGATGATGGC 59.932 52.381 0.00 0.00 0.00 4.40
425 426 2.662866 AGCATTGGAAGTGGATGATGG 58.337 47.619 0.00 0.00 0.00 3.51
426 427 3.242969 CGAAGCATTGGAAGTGGATGATG 60.243 47.826 0.00 0.00 0.00 3.07
427 428 2.947652 CGAAGCATTGGAAGTGGATGAT 59.052 45.455 0.00 0.00 0.00 2.45
428 429 2.358957 CGAAGCATTGGAAGTGGATGA 58.641 47.619 0.00 0.00 0.00 2.92
429 430 1.402968 CCGAAGCATTGGAAGTGGATG 59.597 52.381 0.00 0.00 0.00 3.51
430 431 1.281867 TCCGAAGCATTGGAAGTGGAT 59.718 47.619 0.00 0.00 0.00 3.41
434 435 2.270352 TGTTCCGAAGCATTGGAAGT 57.730 45.000 10.98 0.00 39.64 3.01
456 457 8.627403 CAGGTTCTTCATGCAGATGTTTATATT 58.373 33.333 0.00 0.00 0.00 1.28
457 458 7.230108 CCAGGTTCTTCATGCAGATGTTTATAT 59.770 37.037 0.00 0.00 0.00 0.86
463 464 2.719739 CCAGGTTCTTCATGCAGATGT 58.280 47.619 0.00 0.00 0.00 3.06
464 465 1.404391 GCCAGGTTCTTCATGCAGATG 59.596 52.381 0.00 0.00 0.00 2.90
465 466 1.684248 GGCCAGGTTCTTCATGCAGAT 60.684 52.381 0.00 0.00 0.00 2.90
466 467 0.322816 GGCCAGGTTCTTCATGCAGA 60.323 55.000 0.00 0.00 0.00 4.26
467 468 1.318158 GGGCCAGGTTCTTCATGCAG 61.318 60.000 4.39 0.00 0.00 4.41
468 469 1.304381 GGGCCAGGTTCTTCATGCA 60.304 57.895 4.39 0.00 0.00 3.96
469 470 2.054453 GGGGCCAGGTTCTTCATGC 61.054 63.158 4.39 0.00 0.00 4.06
470 471 1.750399 CGGGGCCAGGTTCTTCATG 60.750 63.158 4.39 0.00 0.00 3.07
471 472 0.912487 TACGGGGCCAGGTTCTTCAT 60.912 55.000 4.39 0.00 0.00 2.57
472 473 1.128809 TTACGGGGCCAGGTTCTTCA 61.129 55.000 4.39 0.00 0.00 3.02
473 474 0.037160 TTTACGGGGCCAGGTTCTTC 59.963 55.000 4.39 0.00 0.00 2.87
474 475 0.479378 TTTTACGGGGCCAGGTTCTT 59.521 50.000 4.39 0.00 0.00 2.52
475 476 0.479378 TTTTTACGGGGCCAGGTTCT 59.521 50.000 4.39 0.00 0.00 3.01
476 477 0.885879 CTTTTTACGGGGCCAGGTTC 59.114 55.000 4.39 0.00 0.00 3.62
477 478 0.479378 TCTTTTTACGGGGCCAGGTT 59.521 50.000 4.39 0.00 0.00 3.50
478 479 0.479378 TTCTTTTTACGGGGCCAGGT 59.521 50.000 4.39 6.67 0.00 4.00
479 480 1.623163 TTTCTTTTTACGGGGCCAGG 58.377 50.000 4.39 0.00 0.00 4.45
480 481 3.386486 GTTTTTCTTTTTACGGGGCCAG 58.614 45.455 4.39 3.10 0.00 4.85
481 482 2.102757 GGTTTTTCTTTTTACGGGGCCA 59.897 45.455 4.39 0.00 0.00 5.36
482 483 2.102757 TGGTTTTTCTTTTTACGGGGCC 59.897 45.455 0.00 0.00 0.00 5.80
483 484 3.455990 TGGTTTTTCTTTTTACGGGGC 57.544 42.857 0.00 0.00 0.00 5.80
484 485 5.227152 CAGATGGTTTTTCTTTTTACGGGG 58.773 41.667 0.00 0.00 0.00 5.73
485 486 4.684242 GCAGATGGTTTTTCTTTTTACGGG 59.316 41.667 0.00 0.00 0.00 5.28
486 487 5.285651 TGCAGATGGTTTTTCTTTTTACGG 58.714 37.500 0.00 0.00 0.00 4.02
487 488 6.640499 TCATGCAGATGGTTTTTCTTTTTACG 59.360 34.615 0.00 0.00 0.00 3.18
488 489 7.945033 TCATGCAGATGGTTTTTCTTTTTAC 57.055 32.000 0.00 0.00 0.00 2.01
489 490 8.420222 TCTTCATGCAGATGGTTTTTCTTTTTA 58.580 29.630 0.00 0.00 0.00 1.52
490 491 7.274447 TCTTCATGCAGATGGTTTTTCTTTTT 58.726 30.769 0.00 0.00 0.00 1.94
491 492 6.819284 TCTTCATGCAGATGGTTTTTCTTTT 58.181 32.000 0.00 0.00 0.00 2.27
492 493 6.266103 TCTCTTCATGCAGATGGTTTTTCTTT 59.734 34.615 0.00 0.00 0.00 2.52
493 494 5.771666 TCTCTTCATGCAGATGGTTTTTCTT 59.228 36.000 0.00 0.00 0.00 2.52
494 495 5.319453 TCTCTTCATGCAGATGGTTTTTCT 58.681 37.500 0.00 0.00 0.00 2.52
495 496 5.633830 TCTCTTCATGCAGATGGTTTTTC 57.366 39.130 0.00 0.00 0.00 2.29
496 497 6.409524 TTTCTCTTCATGCAGATGGTTTTT 57.590 33.333 0.00 0.00 0.00 1.94
497 498 6.183360 TGTTTTCTCTTCATGCAGATGGTTTT 60.183 34.615 0.00 0.00 0.00 2.43
498 499 5.302568 TGTTTTCTCTTCATGCAGATGGTTT 59.697 36.000 0.00 0.00 0.00 3.27
499 500 4.828939 TGTTTTCTCTTCATGCAGATGGTT 59.171 37.500 0.00 0.00 0.00 3.67
500 501 4.401022 TGTTTTCTCTTCATGCAGATGGT 58.599 39.130 0.00 0.00 0.00 3.55
501 502 5.048224 AGTTGTTTTCTCTTCATGCAGATGG 60.048 40.000 0.00 0.00 0.00 3.51
583 584 6.514063 AGAAAAACTACCTATAGATGTCGGC 58.486 40.000 0.00 0.00 32.23 5.54
733 908 7.145323 GCCTTGAATTGTCTTTAGTTTTGCTA 58.855 34.615 0.00 0.00 0.00 3.49
734 909 5.985530 GCCTTGAATTGTCTTTAGTTTTGCT 59.014 36.000 0.00 0.00 0.00 3.91
735 910 5.177511 GGCCTTGAATTGTCTTTAGTTTTGC 59.822 40.000 0.00 0.00 0.00 3.68
736 911 6.421801 CAGGCCTTGAATTGTCTTTAGTTTTG 59.578 38.462 0.00 0.00 0.00 2.44
737 912 6.323739 TCAGGCCTTGAATTGTCTTTAGTTTT 59.676 34.615 0.00 0.00 31.34 2.43
738 913 5.833131 TCAGGCCTTGAATTGTCTTTAGTTT 59.167 36.000 0.00 0.00 31.34 2.66
739 914 5.241728 GTCAGGCCTTGAATTGTCTTTAGTT 59.758 40.000 0.00 0.00 37.61 2.24
740 915 4.762251 GTCAGGCCTTGAATTGTCTTTAGT 59.238 41.667 0.00 0.00 37.61 2.24
741 916 5.006386 AGTCAGGCCTTGAATTGTCTTTAG 58.994 41.667 0.00 0.00 37.61 1.85
742 917 4.985538 AGTCAGGCCTTGAATTGTCTTTA 58.014 39.130 0.00 0.00 37.61 1.85
743 918 3.837355 AGTCAGGCCTTGAATTGTCTTT 58.163 40.909 0.00 0.00 37.61 2.52
822 997 3.181967 GTGCCGCACGAGCTACAG 61.182 66.667 7.96 0.00 39.10 2.74
855 1030 4.631377 TCAGAACTTCCATGCGTAGAATTG 59.369 41.667 0.00 0.00 0.00 2.32
856 1031 4.832248 TCAGAACTTCCATGCGTAGAATT 58.168 39.130 0.00 0.00 0.00 2.17
858 1033 3.953712 TCAGAACTTCCATGCGTAGAA 57.046 42.857 0.00 0.00 0.00 2.10
859 1034 3.849911 CTTCAGAACTTCCATGCGTAGA 58.150 45.455 0.00 0.00 0.00 2.59
860 1035 2.349886 GCTTCAGAACTTCCATGCGTAG 59.650 50.000 0.00 0.00 0.00 3.51
869 1054 2.693069 TGCAGCTAGCTTCAGAACTTC 58.307 47.619 16.46 0.00 45.94 3.01
963 1165 3.339141 GGTTGTTCAGGATCAGAAGACC 58.661 50.000 12.67 12.67 0.00 3.85
1008 1210 0.392729 ACGACGTCTTCTCCTCCGAT 60.393 55.000 14.70 0.00 0.00 4.18
1102 1304 4.790861 GCCGACGGGAAGGACGAC 62.791 72.222 17.22 0.00 34.06 4.34
1124 1326 3.604494 ATGAACTGCGCGTCGACGA 62.604 57.895 39.74 19.41 43.02 4.20
1126 1328 2.689766 GATGAACTGCGCGTCGAC 59.310 61.111 8.43 5.18 0.00 4.20
1127 1329 2.874315 CGATGAACTGCGCGTCGA 60.874 61.111 8.43 0.00 45.05 4.20
1545 1819 6.500041 TCAGTAAAACCAAAATCCAAACTCG 58.500 36.000 0.00 0.00 0.00 4.18
1703 1977 9.894783 ACGTGACACAAGATTGATATATACTAC 57.105 33.333 6.37 0.00 0.00 2.73
1800 2074 0.906756 TCTAGAAGCTGCTGGCCAGT 60.907 55.000 32.81 13.93 43.71 4.00
1801 2075 0.251354 TTCTAGAAGCTGCTGGCCAG 59.749 55.000 29.34 29.34 44.67 4.85
1802 2076 0.251354 CTTCTAGAAGCTGCTGGCCA 59.749 55.000 19.23 4.71 43.05 5.36
1863 2142 8.800231 TTCATAGTTAAACGGCTTTTTAAACC 57.200 30.769 0.00 0.00 33.71 3.27
1872 2151 6.628919 AAACAGTTTCATAGTTAAACGGCT 57.371 33.333 0.00 0.00 40.86 5.52
1886 2166 5.546526 TGATGGGGCAAAATAAACAGTTTC 58.453 37.500 0.48 0.00 0.00 2.78
1916 2196 6.647895 TGATCTTAGTTAACTTTGACGGTTCC 59.352 38.462 14.49 1.04 0.00 3.62
1918 2198 7.215085 ACTGATCTTAGTTAACTTTGACGGTT 58.785 34.615 14.49 0.00 0.00 4.44
1983 2297 7.334421 ACACTGTGTATAAAGAGCTACCATTTG 59.666 37.037 12.53 0.00 0.00 2.32
1989 2303 5.962433 TCCACACTGTGTATAAAGAGCTAC 58.038 41.667 13.89 0.00 0.00 3.58
2052 2377 9.341078 CTTGTTTAAGTAGGTTACCTTTGGTAA 57.659 33.333 10.01 5.20 44.72 2.85
2061 2386 5.868454 TCCACCCTTGTTTAAGTAGGTTAC 58.132 41.667 0.00 0.00 29.33 2.50
2076 2401 4.898014 TCCATAATTCCATTCCACCCTT 57.102 40.909 0.00 0.00 0.00 3.95
2114 2439 7.979444 TGGTTTGTTTAATTTTGACCACAAA 57.021 28.000 0.00 0.00 43.10 2.83
2180 2505 9.683069 CACTAAAGTTGAAAGCATATTGAAAGT 57.317 29.630 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.