Multiple sequence alignment - TraesCS5B01G279500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G279500 chr5B 100.000 3945 0 0 1 3945 465235548 465239492 0.000000e+00 7286.0
1 TraesCS5B01G279500 chr5B 92.857 280 17 3 2583 2860 465237800 465238078 1.710000e-108 403.0
2 TraesCS5B01G279500 chr5B 92.857 280 17 3 2253 2531 465238130 465238407 1.710000e-108 403.0
3 TraesCS5B01G279500 chr5B 78.116 329 55 12 1 316 533097176 533097500 4.020000e-45 193.0
4 TraesCS5B01G279500 chr5B 90.909 121 9 1 3588 3708 370044187 370044305 1.130000e-35 161.0
5 TraesCS5B01G279500 chr5A 91.182 2699 158 25 731 3365 489795998 489798680 0.000000e+00 3592.0
6 TraesCS5B01G279500 chr5A 89.194 583 32 19 3370 3945 489798739 489799297 0.000000e+00 699.0
7 TraesCS5B01G279500 chr5A 93.277 357 20 3 2176 2531 489797803 489798156 1.260000e-144 523.0
8 TraesCS5B01G279500 chr5A 91.901 284 17 4 2583 2860 489797522 489797805 3.700000e-105 392.0
9 TraesCS5B01G279500 chr5A 90.146 274 27 0 1781 2054 660302907 660303180 1.350000e-94 357.0
10 TraesCS5B01G279500 chr5A 80.000 405 69 8 1 402 307695476 307695081 4.990000e-74 289.0
11 TraesCS5B01G279500 chr5A 91.096 146 10 3 609 754 639187332 639187474 1.120000e-45 195.0
12 TraesCS5B01G279500 chr5D 93.045 2056 94 18 1585 3598 387089668 387091716 0.000000e+00 2959.0
13 TraesCS5B01G279500 chr5D 91.310 794 52 4 774 1567 387088830 387089606 0.000000e+00 1068.0
14 TraesCS5B01G279500 chr5D 94.134 358 18 3 2176 2531 387090616 387090972 3.470000e-150 542.0
15 TraesCS5B01G279500 chr5D 91.815 281 20 3 2583 2860 387090338 387090618 4.780000e-104 388.0
16 TraesCS5B01G279500 chr5D 91.144 271 23 1 1784 2054 47186466 47186197 2.240000e-97 366.0
17 TraesCS5B01G279500 chr5D 90.511 274 25 1 1781 2054 326030369 326030641 1.040000e-95 361.0
18 TraesCS5B01G279500 chr5D 89.272 261 17 5 3691 3945 387091714 387091969 2.290000e-82 316.0
19 TraesCS5B01G279500 chr5D 79.361 407 72 4 1 396 412746334 412746739 3.880000e-70 276.0
20 TraesCS5B01G279500 chr1B 94.613 297 16 0 3087 3383 28547999 28547703 9.990000e-126 460.0
21 TraesCS5B01G279500 chr1B 80.743 296 43 6 1 285 458324703 458324411 6.640000e-53 219.0
22 TraesCS5B01G279500 chr1B 77.662 385 67 11 1 371 633296196 633295817 2.390000e-52 217.0
23 TraesCS5B01G279500 chr1B 96.667 120 4 0 614 733 137651559 137651678 2.400000e-47 200.0
24 TraesCS5B01G279500 chr1B 95.192 104 5 0 3596 3699 415223284 415223387 8.770000e-37 165.0
25 TraesCS5B01G279500 chr1B 90.323 124 9 2 3584 3705 595601455 595601577 4.080000e-35 159.0
26 TraesCS5B01G279500 chr7D 80.469 512 70 13 1 484 104941935 104941426 8.060000e-97 364.0
27 TraesCS5B01G279500 chr7D 80.630 413 68 4 1 403 556183717 556183307 3.830000e-80 309.0
28 TraesCS5B01G279500 chr4B 90.511 274 26 0 1781 2054 509512918 509513191 2.900000e-96 363.0
29 TraesCS5B01G279500 chr4B 96.721 122 4 0 614 735 171613804 171613925 1.860000e-48 204.0
30 TraesCS5B01G279500 chr4B 97.458 118 3 0 616 733 9944343 9944460 6.680000e-48 202.0
31 TraesCS5B01G279500 chr4B 97.959 98 2 0 3596 3693 260037060 260037157 1.880000e-38 171.0
32 TraesCS5B01G279500 chr6A 90.406 271 25 1 1784 2054 483051477 483051208 4.850000e-94 355.0
33 TraesCS5B01G279500 chr6A 78.589 411 66 10 7 402 149862630 149862227 6.540000e-63 252.0
34 TraesCS5B01G279500 chr6A 97.458 118 3 0 616 733 296983561 296983678 6.680000e-48 202.0
35 TraesCS5B01G279500 chr3D 89.781 274 28 0 1781 2054 63801997 63802270 6.270000e-93 351.0
36 TraesCS5B01G279500 chr4A 89.668 271 28 0 1784 2054 216406550 216406280 2.920000e-91 346.0
37 TraesCS5B01G279500 chr2B 79.600 500 74 12 19 491 695443105 695442607 2.270000e-87 333.0
38 TraesCS5B01G279500 chr2B 97.458 118 3 0 617 734 788660475 788660358 6.680000e-48 202.0
39 TraesCS5B01G279500 chr2B 97.000 100 3 0 3595 3694 12876068 12876167 6.780000e-38 169.0
40 TraesCS5B01G279500 chr2B 93.750 112 7 0 3595 3706 664215266 664215155 6.780000e-38 169.0
41 TraesCS5B01G279500 chr2B 95.192 104 5 0 3595 3698 403101609 403101712 8.770000e-37 165.0
42 TraesCS5B01G279500 chr2D 80.872 413 67 4 1 402 110022198 110022609 8.230000e-82 315.0
43 TraesCS5B01G279500 chr2D 81.567 217 29 3 1 207 489597974 489598189 6.780000e-38 169.0
44 TraesCS5B01G279500 chrUn 79.281 473 76 12 1 457 292875509 292875043 1.060000e-80 311.0
45 TraesCS5B01G279500 chr1A 77.244 479 88 10 1 459 427041556 427042033 1.090000e-65 261.0
46 TraesCS5B01G279500 chr6B 76.645 471 93 10 1 457 707798137 707798604 1.100000e-60 244.0
47 TraesCS5B01G279500 chr6B 78.528 326 56 7 1 315 576811750 576812072 6.680000e-48 202.0
48 TraesCS5B01G279500 chr6B 80.128 156 21 6 3011 3163 86315789 86315937 1.500000e-19 108.0
49 TraesCS5B01G279500 chr6B 97.872 47 1 0 2238 2284 617791757 617791803 9.090000e-12 82.4
50 TraesCS5B01G279500 chr6B 96.875 32 1 0 2583 2614 617791772 617791803 2.000000e-03 54.7
51 TraesCS5B01G279500 chr2A 96.694 121 4 0 616 736 603855878 603855758 6.680000e-48 202.0
52 TraesCS5B01G279500 chr2A 95.238 126 5 1 610 734 754466086 754466211 8.650000e-47 198.0
53 TraesCS5B01G279500 chr7A 94.531 128 6 1 608 734 491263288 491263161 3.110000e-46 196.0
54 TraesCS5B01G279500 chr3B 74.684 474 98 9 1 457 143152748 143153216 1.450000e-44 191.0
55 TraesCS5B01G279500 chr3B 91.304 115 10 0 3581 3695 164032574 164032688 1.470000e-34 158.0
56 TraesCS5B01G279500 chr6D 96.040 101 4 0 3599 3699 88883029 88882929 8.770000e-37 165.0
57 TraesCS5B01G279500 chr7B 82.540 189 23 4 1 180 693322754 693322567 1.470000e-34 158.0
58 TraesCS5B01G279500 chr1D 86.441 59 7 1 1077 1135 473387617 473387560 3.290000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G279500 chr5B 465235548 465239492 3944 False 2697.333333 7286 95.2380 1 3945 3 chr5B.!!$F3 3944
1 TraesCS5B01G279500 chr5A 489795998 489799297 3299 False 1301.500000 3592 91.3885 731 3945 4 chr5A.!!$F3 3214
2 TraesCS5B01G279500 chr5D 387088830 387091969 3139 False 1054.600000 2959 91.9152 774 3945 5 chr5D.!!$F3 3171
3 TraesCS5B01G279500 chr7D 104941426 104941935 509 True 364.000000 364 80.4690 1 484 1 chr7D.!!$R1 483

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
635 664 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.0 5.23 0.0 44.66 2.17 F
636 665 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.0 5.23 0.0 44.66 1.40 F
638 667 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 F
2404 2494 0.178767 AGGCTATTCATGCAGTGCGA 59.821 50.0 11.20 0.0 0.00 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1589 1668 0.376852 TGAAGCAGTGAACGTGCAAC 59.623 50.000 0.00 0.00 43.82 4.17 R
2404 2494 0.462789 ACACCGACGAAACAGAACCT 59.537 50.000 0.00 0.00 0.00 3.50 R
2470 2561 3.603173 CGTAAATGATCTGCACATCAGCG 60.603 47.826 10.52 8.23 42.56 5.18 R
3531 3752 1.001158 GACACTATCAGCTACGGAGGC 60.001 57.143 0.00 0.00 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.179081 GCCCCCATCACGACTAAGAC 60.179 60.000 0.00 0.00 0.00 3.01
67 68 5.620206 CATACCTGCTATCCATTAACCACA 58.380 41.667 0.00 0.00 0.00 4.17
70 71 5.518865 ACCTGCTATCCATTAACCACAAAT 58.481 37.500 0.00 0.00 0.00 2.32
76 77 2.752354 TCCATTAACCACAAATCCAGCG 59.248 45.455 0.00 0.00 0.00 5.18
79 80 1.832883 TAACCACAAATCCAGCGCAT 58.167 45.000 11.47 0.00 0.00 4.73
80 81 0.244450 AACCACAAATCCAGCGCATG 59.756 50.000 11.47 4.88 0.00 4.06
85 86 0.527113 CAAATCCAGCGCATGTTCCA 59.473 50.000 11.47 0.00 0.00 3.53
89 90 0.462581 TCCAGCGCATGTTCCATCTC 60.463 55.000 11.47 0.00 0.00 2.75
93 94 0.820891 GCGCATGTTCCATCTCCCAT 60.821 55.000 0.30 0.00 0.00 4.00
98 99 3.755378 GCATGTTCCATCTCCCATATGTC 59.245 47.826 1.24 0.00 0.00 3.06
101 102 3.069586 TGTTCCATCTCCCATATGTCGTC 59.930 47.826 1.24 0.00 0.00 4.20
141 151 0.175989 GAACTACCTCCCAAGCTCCG 59.824 60.000 0.00 0.00 0.00 4.63
143 153 3.432051 CTACCTCCCAAGCTCCGCG 62.432 68.421 0.00 0.00 0.00 6.46
164 174 3.657537 GATGTTGGAGCAAACGTCG 57.342 52.632 0.00 0.00 36.60 5.12
210 221 1.965930 TGCACCACAAGGATGTCGC 60.966 57.895 0.00 0.00 37.82 5.19
212 223 2.047274 ACCACAAGGATGTCGCCG 60.047 61.111 0.00 0.00 37.82 6.46
214 225 2.434884 CACAAGGATGTCGCCGCT 60.435 61.111 0.00 0.00 37.82 5.52
215 226 2.434884 ACAAGGATGTCGCCGCTG 60.435 61.111 0.00 0.00 33.41 5.18
228 239 4.758251 CGCTGCCACGACATCCCA 62.758 66.667 0.00 0.00 34.06 4.37
229 240 2.359850 GCTGCCACGACATCCCAA 60.360 61.111 0.00 0.00 0.00 4.12
243 254 3.136443 ACATCCCAACTTGAACAGACTGA 59.864 43.478 10.08 0.00 0.00 3.41
246 257 4.792068 TCCCAACTTGAACAGACTGATTT 58.208 39.130 10.08 0.00 0.00 2.17
247 258 5.200483 TCCCAACTTGAACAGACTGATTTT 58.800 37.500 10.08 0.00 0.00 1.82
253 264 9.734620 CAACTTGAACAGACTGATTTTCAAATA 57.265 29.630 10.08 0.00 37.48 1.40
261 272 9.458727 ACAGACTGATTTTCAAATACATCATCT 57.541 29.630 10.08 0.00 0.00 2.90
273 284 8.515414 TCAAATACATCATCTACCATAGAGACG 58.485 37.037 0.00 0.00 38.38 4.18
275 286 5.950758 ACATCATCTACCATAGAGACGAC 57.049 43.478 0.00 0.00 38.38 4.34
295 306 2.027192 ACTGCCTCGCCAAAGAAGAATA 60.027 45.455 0.00 0.00 0.00 1.75
297 308 2.290008 TGCCTCGCCAAAGAAGAATACA 60.290 45.455 0.00 0.00 0.00 2.29
318 329 5.494724 ACAGAGCTTCTTTATTCAGCATCA 58.505 37.500 0.00 0.00 35.88 3.07
319 330 5.353678 ACAGAGCTTCTTTATTCAGCATCAC 59.646 40.000 0.00 0.00 35.88 3.06
327 338 2.520465 ATTCAGCATCACCGTCGCCA 62.520 55.000 0.00 0.00 0.00 5.69
330 341 2.183300 GCATCACCGTCGCCACTA 59.817 61.111 0.00 0.00 0.00 2.74
350 361 1.615107 CCGAAGCCAAGACGTCGAAC 61.615 60.000 10.46 1.25 42.97 3.95
351 362 0.937699 CGAAGCCAAGACGTCGAACA 60.938 55.000 10.46 0.00 42.97 3.18
366 377 5.066246 ACGTCGAACAATCCAAAAACCTAAA 59.934 36.000 0.00 0.00 0.00 1.85
370 381 7.588854 GTCGAACAATCCAAAAACCTAAACTAC 59.411 37.037 0.00 0.00 0.00 2.73
376 387 6.130692 TCCAAAAACCTAAACTACTAGGGG 57.869 41.667 0.00 0.00 42.57 4.79
378 389 4.581309 AAAACCTAAACTACTAGGGGCC 57.419 45.455 0.00 0.00 42.57 5.80
389 401 5.846868 ACTACTAGGGGCCTAGAACTAAAA 58.153 41.667 2.83 0.00 46.56 1.52
403 415 8.827677 CCTAGAACTAAAACTAAAATGATCCGG 58.172 37.037 0.00 0.00 0.00 5.14
404 416 7.085052 AGAACTAAAACTAAAATGATCCGGC 57.915 36.000 0.00 0.00 0.00 6.13
405 417 5.479716 ACTAAAACTAAAATGATCCGGCG 57.520 39.130 0.00 0.00 0.00 6.46
422 450 4.176752 GGCCCCCTCACCATCGAC 62.177 72.222 0.00 0.00 0.00 4.20
432 460 0.243907 CACCATCGACGACCAAGAGT 59.756 55.000 0.00 0.00 0.00 3.24
433 461 0.526662 ACCATCGACGACCAAGAGTC 59.473 55.000 0.00 0.00 42.54 3.36
434 462 0.526211 CCATCGACGACCAAGAGTCA 59.474 55.000 0.00 0.00 46.69 3.41
435 463 1.618861 CATCGACGACCAAGAGTCAC 58.381 55.000 0.00 0.00 46.69 3.67
475 504 1.430369 AAGGGTTGGCTCTCTTGGCT 61.430 55.000 0.00 0.00 0.00 4.75
476 505 1.676967 GGGTTGGCTCTCTTGGCTG 60.677 63.158 0.00 0.00 0.00 4.85
478 507 1.303155 GTTGGCTCTCTTGGCTGCT 60.303 57.895 0.00 0.00 0.00 4.24
500 529 2.198426 CCAGGGTTGGCAGGTTGT 59.802 61.111 0.00 0.00 37.73 3.32
501 530 1.458486 CCAGGGTTGGCAGGTTGTA 59.542 57.895 0.00 0.00 37.73 2.41
502 531 0.178975 CCAGGGTTGGCAGGTTGTAA 60.179 55.000 0.00 0.00 37.73 2.41
503 532 0.958822 CAGGGTTGGCAGGTTGTAAC 59.041 55.000 0.00 0.00 0.00 2.50
504 533 0.850784 AGGGTTGGCAGGTTGTAACT 59.149 50.000 0.00 0.00 0.00 2.24
505 534 2.059490 AGGGTTGGCAGGTTGTAACTA 58.941 47.619 0.00 0.00 0.00 2.24
506 535 2.444010 AGGGTTGGCAGGTTGTAACTAA 59.556 45.455 0.00 0.00 0.00 2.24
507 536 3.075432 AGGGTTGGCAGGTTGTAACTAAT 59.925 43.478 0.00 0.00 0.00 1.73
508 537 3.442625 GGGTTGGCAGGTTGTAACTAATC 59.557 47.826 0.00 0.00 0.00 1.75
509 538 4.076394 GGTTGGCAGGTTGTAACTAATCA 58.924 43.478 0.00 0.00 0.00 2.57
510 539 4.156008 GGTTGGCAGGTTGTAACTAATCAG 59.844 45.833 0.00 0.00 0.00 2.90
511 540 4.901197 TGGCAGGTTGTAACTAATCAGA 57.099 40.909 0.00 0.00 0.00 3.27
512 541 5.435686 TGGCAGGTTGTAACTAATCAGAT 57.564 39.130 0.00 0.00 0.00 2.90
513 542 5.428253 TGGCAGGTTGTAACTAATCAGATC 58.572 41.667 0.00 0.00 0.00 2.75
514 543 4.816925 GGCAGGTTGTAACTAATCAGATCC 59.183 45.833 0.00 0.00 0.00 3.36
515 544 5.428253 GCAGGTTGTAACTAATCAGATCCA 58.572 41.667 0.00 0.00 0.00 3.41
516 545 6.058183 GCAGGTTGTAACTAATCAGATCCAT 58.942 40.000 0.00 0.00 0.00 3.41
517 546 6.203723 GCAGGTTGTAACTAATCAGATCCATC 59.796 42.308 0.00 0.00 0.00 3.51
518 547 6.708054 CAGGTTGTAACTAATCAGATCCATCC 59.292 42.308 0.00 0.00 0.00 3.51
519 548 6.617371 AGGTTGTAACTAATCAGATCCATCCT 59.383 38.462 0.00 0.00 0.00 3.24
520 549 7.127955 AGGTTGTAACTAATCAGATCCATCCTT 59.872 37.037 0.00 0.00 0.00 3.36
521 550 7.775561 GGTTGTAACTAATCAGATCCATCCTTT 59.224 37.037 0.00 0.00 0.00 3.11
522 551 8.616076 GTTGTAACTAATCAGATCCATCCTTTG 58.384 37.037 0.00 0.00 0.00 2.77
523 552 8.089625 TGTAACTAATCAGATCCATCCTTTGA 57.910 34.615 0.00 0.00 0.00 2.69
524 553 7.987458 TGTAACTAATCAGATCCATCCTTTGAC 59.013 37.037 0.00 0.00 0.00 3.18
525 554 5.605534 ACTAATCAGATCCATCCTTTGACG 58.394 41.667 0.00 0.00 0.00 4.35
526 555 4.760530 AATCAGATCCATCCTTTGACGA 57.239 40.909 0.00 0.00 0.00 4.20
527 556 4.760530 ATCAGATCCATCCTTTGACGAA 57.239 40.909 0.00 0.00 0.00 3.85
528 557 4.760530 TCAGATCCATCCTTTGACGAAT 57.239 40.909 0.00 0.00 0.00 3.34
529 558 4.697514 TCAGATCCATCCTTTGACGAATC 58.302 43.478 0.00 0.00 0.00 2.52
530 559 3.492383 CAGATCCATCCTTTGACGAATCG 59.508 47.826 0.00 0.00 0.00 3.34
531 560 3.133003 AGATCCATCCTTTGACGAATCGT 59.867 43.478 8.47 8.47 45.10 3.73
532 561 4.341235 AGATCCATCCTTTGACGAATCGTA 59.659 41.667 8.77 0.00 41.37 3.43
533 562 4.665833 TCCATCCTTTGACGAATCGTAT 57.334 40.909 8.77 0.00 41.37 3.06
534 563 5.777850 TCCATCCTTTGACGAATCGTATA 57.222 39.130 8.77 0.00 41.37 1.47
535 564 6.340962 TCCATCCTTTGACGAATCGTATAT 57.659 37.500 8.77 0.00 41.37 0.86
536 565 6.387465 TCCATCCTTTGACGAATCGTATATC 58.613 40.000 8.77 0.00 41.37 1.63
537 566 5.286320 CCATCCTTTGACGAATCGTATATCG 59.714 44.000 8.77 0.00 41.37 2.92
545 574 3.489444 CGAATCGTATATCGTGTGGAGG 58.511 50.000 0.00 0.00 40.80 4.30
546 575 3.058432 CGAATCGTATATCGTGTGGAGGT 60.058 47.826 0.00 0.00 40.80 3.85
547 576 4.556104 CGAATCGTATATCGTGTGGAGGTT 60.556 45.833 0.00 0.00 40.80 3.50
548 577 4.931661 ATCGTATATCGTGTGGAGGTTT 57.068 40.909 0.00 0.00 40.80 3.27
549 578 4.036567 TCGTATATCGTGTGGAGGTTTG 57.963 45.455 0.00 0.00 40.80 2.93
550 579 3.444742 TCGTATATCGTGTGGAGGTTTGT 59.555 43.478 0.00 0.00 40.80 2.83
551 580 4.082081 TCGTATATCGTGTGGAGGTTTGTT 60.082 41.667 0.00 0.00 40.80 2.83
552 581 4.628333 CGTATATCGTGTGGAGGTTTGTTT 59.372 41.667 0.00 0.00 34.52 2.83
553 582 5.121142 CGTATATCGTGTGGAGGTTTGTTTT 59.879 40.000 0.00 0.00 34.52 2.43
554 583 6.347888 CGTATATCGTGTGGAGGTTTGTTTTT 60.348 38.462 0.00 0.00 34.52 1.94
555 584 7.148606 CGTATATCGTGTGGAGGTTTGTTTTTA 60.149 37.037 0.00 0.00 34.52 1.52
556 585 4.886247 TCGTGTGGAGGTTTGTTTTTAG 57.114 40.909 0.00 0.00 0.00 1.85
557 586 4.515361 TCGTGTGGAGGTTTGTTTTTAGA 58.485 39.130 0.00 0.00 0.00 2.10
558 587 5.127491 TCGTGTGGAGGTTTGTTTTTAGAT 58.873 37.500 0.00 0.00 0.00 1.98
559 588 5.008217 TCGTGTGGAGGTTTGTTTTTAGATG 59.992 40.000 0.00 0.00 0.00 2.90
560 589 5.220970 CGTGTGGAGGTTTGTTTTTAGATGT 60.221 40.000 0.00 0.00 0.00 3.06
561 590 5.977129 GTGTGGAGGTTTGTTTTTAGATGTG 59.023 40.000 0.00 0.00 0.00 3.21
562 591 5.654650 TGTGGAGGTTTGTTTTTAGATGTGT 59.345 36.000 0.00 0.00 0.00 3.72
563 592 5.977129 GTGGAGGTTTGTTTTTAGATGTGTG 59.023 40.000 0.00 0.00 0.00 3.82
564 593 4.982295 GGAGGTTTGTTTTTAGATGTGTGC 59.018 41.667 0.00 0.00 0.00 4.57
565 594 5.451242 GGAGGTTTGTTTTTAGATGTGTGCA 60.451 40.000 0.00 0.00 0.00 4.57
566 595 6.160576 AGGTTTGTTTTTAGATGTGTGCAT 57.839 33.333 0.00 0.00 38.18 3.96
578 607 5.824904 GATGTGTGCATCCTAAATGTCTT 57.175 39.130 0.00 0.00 44.26 3.01
579 608 5.814783 GATGTGTGCATCCTAAATGTCTTC 58.185 41.667 0.00 0.00 44.26 2.87
580 609 4.650734 TGTGTGCATCCTAAATGTCTTCA 58.349 39.130 0.00 0.00 0.00 3.02
581 610 5.069318 TGTGTGCATCCTAAATGTCTTCAA 58.931 37.500 0.00 0.00 0.00 2.69
582 611 5.534278 TGTGTGCATCCTAAATGTCTTCAAA 59.466 36.000 0.00 0.00 0.00 2.69
583 612 5.858581 GTGTGCATCCTAAATGTCTTCAAAC 59.141 40.000 0.00 0.00 0.00 2.93
584 613 5.534278 TGTGCATCCTAAATGTCTTCAAACA 59.466 36.000 0.00 0.00 0.00 2.83
585 614 6.209192 TGTGCATCCTAAATGTCTTCAAACAT 59.791 34.615 0.00 0.00 41.60 2.71
586 615 6.749118 GTGCATCCTAAATGTCTTCAAACATC 59.251 38.462 0.00 0.00 38.92 3.06
587 616 6.660521 TGCATCCTAAATGTCTTCAAACATCT 59.339 34.615 0.00 0.00 38.92 2.90
588 617 7.177216 TGCATCCTAAATGTCTTCAAACATCTT 59.823 33.333 0.00 0.00 38.92 2.40
589 618 7.487189 GCATCCTAAATGTCTTCAAACATCTTG 59.513 37.037 0.00 0.00 38.92 3.02
590 619 8.517878 CATCCTAAATGTCTTCAAACATCTTGT 58.482 33.333 0.00 0.00 38.92 3.16
591 620 8.463930 TCCTAAATGTCTTCAAACATCTTGTT 57.536 30.769 0.00 0.00 43.41 2.83
592 621 8.352201 TCCTAAATGTCTTCAAACATCTTGTTG 58.648 33.333 0.00 0.00 40.14 3.33
593 622 8.352201 CCTAAATGTCTTCAAACATCTTGTTGA 58.648 33.333 0.00 0.00 40.14 3.18
594 623 9.903682 CTAAATGTCTTCAAACATCTTGTTGAT 57.096 29.630 0.00 0.00 40.14 2.57
602 631 2.846039 CATCTTGTTGATGCAGAGGC 57.154 50.000 0.00 0.00 44.96 4.70
603 632 2.366533 CATCTTGTTGATGCAGAGGCT 58.633 47.619 0.00 0.00 44.96 4.58
604 633 1.817357 TCTTGTTGATGCAGAGGCTG 58.183 50.000 0.00 0.00 41.91 4.85
605 634 0.809385 CTTGTTGATGCAGAGGCTGG 59.191 55.000 0.00 0.00 41.91 4.85
606 635 0.609957 TTGTTGATGCAGAGGCTGGG 60.610 55.000 0.00 0.00 41.91 4.45
607 636 1.751927 GTTGATGCAGAGGCTGGGG 60.752 63.158 0.00 0.00 41.91 4.96
608 637 3.650298 TTGATGCAGAGGCTGGGGC 62.650 63.158 0.00 0.00 41.91 5.80
609 638 3.806667 GATGCAGAGGCTGGGGCT 61.807 66.667 0.00 0.00 42.48 5.19
610 639 2.367377 ATGCAGAGGCTGGGGCTA 60.367 61.111 0.00 0.00 38.98 3.93
611 640 1.987807 GATGCAGAGGCTGGGGCTAA 61.988 60.000 0.00 0.00 38.98 3.09
612 641 2.124529 GCAGAGGCTGGGGCTAAC 60.125 66.667 0.00 0.00 38.98 2.34
613 642 2.674220 GCAGAGGCTGGGGCTAACT 61.674 63.158 0.00 0.00 38.98 2.24
614 643 1.338136 GCAGAGGCTGGGGCTAACTA 61.338 60.000 0.00 0.00 38.98 2.24
615 644 0.755686 CAGAGGCTGGGGCTAACTAG 59.244 60.000 0.00 0.00 38.98 2.57
616 645 0.340208 AGAGGCTGGGGCTAACTAGT 59.660 55.000 0.00 0.00 38.98 2.57
617 646 1.574339 AGAGGCTGGGGCTAACTAGTA 59.426 52.381 0.00 0.00 38.98 1.82
618 647 1.687660 GAGGCTGGGGCTAACTAGTAC 59.312 57.143 0.00 0.00 38.98 2.73
619 648 1.291335 AGGCTGGGGCTAACTAGTACT 59.709 52.381 0.00 0.00 36.44 2.73
620 649 1.687660 GGCTGGGGCTAACTAGTACTC 59.312 57.143 0.00 0.00 38.73 2.59
621 650 1.687660 GCTGGGGCTAACTAGTACTCC 59.312 57.143 0.00 0.00 35.22 3.85
622 651 2.317973 CTGGGGCTAACTAGTACTCCC 58.682 57.143 14.62 14.62 0.00 4.30
623 652 1.935196 TGGGGCTAACTAGTACTCCCT 59.065 52.381 19.58 0.00 34.28 4.20
624 653 2.091444 TGGGGCTAACTAGTACTCCCTC 60.091 54.545 19.58 13.09 34.28 4.30
625 654 2.596346 GGGCTAACTAGTACTCCCTCC 58.404 57.143 15.34 0.00 0.00 4.30
626 655 2.228925 GGCTAACTAGTACTCCCTCCG 58.771 57.143 0.00 0.00 0.00 4.63
627 656 2.422661 GGCTAACTAGTACTCCCTCCGT 60.423 54.545 0.00 0.00 0.00 4.69
628 657 2.877786 GCTAACTAGTACTCCCTCCGTC 59.122 54.545 0.00 0.00 0.00 4.79
629 658 2.433662 AACTAGTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
630 659 0.179936 ACTAGTACTCCCTCCGTCCG 59.820 60.000 0.00 0.00 0.00 4.79
631 660 0.534652 CTAGTACTCCCTCCGTCCGG 60.535 65.000 0.00 0.00 0.00 5.14
632 661 0.982852 TAGTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
633 662 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
634 663 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
635 664 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
636 665 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
637 666 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
638 667 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
639 668 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
640 669 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
641 670 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
642 671 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
643 672 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
644 673 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
645 674 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
646 675 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
647 676 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
648 677 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
649 678 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
650 679 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
651 680 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
652 681 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
653 682 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
654 683 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
655 684 7.433131 CGGAAATACTTGTCATCAAAATGGATG 59.567 37.037 0.00 0.00 44.78 3.51
666 695 6.578944 CATCAAAATGGATGAACATGGATGT 58.421 36.000 0.00 0.00 46.00 3.06
667 696 7.718525 CATCAAAATGGATGAACATGGATGTA 58.281 34.615 0.00 0.00 46.00 2.29
668 697 7.901283 TCAAAATGGATGAACATGGATGTAT 57.099 32.000 0.00 0.00 40.80 2.29
669 698 7.944061 TCAAAATGGATGAACATGGATGTATC 58.056 34.615 0.00 0.00 40.80 2.24
670 699 7.781219 TCAAAATGGATGAACATGGATGTATCT 59.219 33.333 0.00 0.00 40.80 1.98
671 700 9.070179 CAAAATGGATGAACATGGATGTATCTA 57.930 33.333 0.00 0.00 40.80 1.98
672 701 8.859236 AAATGGATGAACATGGATGTATCTAG 57.141 34.615 0.00 0.00 40.80 2.43
673 702 7.803487 ATGGATGAACATGGATGTATCTAGA 57.197 36.000 0.00 0.00 40.80 2.43
674 703 7.616528 TGGATGAACATGGATGTATCTAGAA 57.383 36.000 0.00 0.00 40.80 2.10
675 704 7.445121 TGGATGAACATGGATGTATCTAGAAC 58.555 38.462 0.00 0.00 40.80 3.01
676 705 7.290948 TGGATGAACATGGATGTATCTAGAACT 59.709 37.037 0.00 0.00 40.80 3.01
677 706 8.807118 GGATGAACATGGATGTATCTAGAACTA 58.193 37.037 0.00 0.00 40.80 2.24
708 737 9.499479 ACATCTAGATACATCCATTTCAATGAC 57.501 33.333 4.54 0.00 38.70 3.06
709 738 9.498176 CATCTAGATACATCCATTTCAATGACA 57.502 33.333 4.54 0.00 38.70 3.58
711 740 9.551734 TCTAGATACATCCATTTCAATGACAAG 57.448 33.333 0.81 0.00 38.70 3.16
712 741 9.334947 CTAGATACATCCATTTCAATGACAAGT 57.665 33.333 0.81 0.00 38.70 3.16
714 743 9.857656 AGATACATCCATTTCAATGACAAGTAT 57.142 29.630 0.81 4.50 38.70 2.12
719 748 9.225201 CATCCATTTCAATGACAAGTATTTACG 57.775 33.333 0.81 0.00 38.70 3.18
720 749 7.757526 TCCATTTCAATGACAAGTATTTACGG 58.242 34.615 0.81 0.00 38.70 4.02
721 750 7.608376 TCCATTTCAATGACAAGTATTTACGGA 59.392 33.333 0.81 0.00 38.70 4.69
722 751 7.696453 CCATTTCAATGACAAGTATTTACGGAC 59.304 37.037 0.81 0.00 38.70 4.79
723 752 6.397831 TTCAATGACAAGTATTTACGGACG 57.602 37.500 0.00 0.00 0.00 4.79
724 753 4.865925 TCAATGACAAGTATTTACGGACGG 59.134 41.667 0.00 0.00 0.00 4.79
725 754 4.724074 ATGACAAGTATTTACGGACGGA 57.276 40.909 0.00 0.00 0.00 4.69
726 755 4.100707 TGACAAGTATTTACGGACGGAG 57.899 45.455 0.00 0.00 0.00 4.63
727 756 3.119388 TGACAAGTATTTACGGACGGAGG 60.119 47.826 0.00 0.00 0.00 4.30
728 757 3.091545 ACAAGTATTTACGGACGGAGGA 58.908 45.455 0.00 0.00 0.00 3.71
729 758 3.511146 ACAAGTATTTACGGACGGAGGAA 59.489 43.478 0.00 0.00 0.00 3.36
798 827 1.215647 GAGGTCTGCCCACGTGTAG 59.784 63.158 15.65 9.85 34.66 2.74
818 847 3.946833 TAGGTATCCTGTGGCGTACCATT 60.947 47.826 15.29 4.28 41.03 3.16
884 915 4.351054 CCCCCGAGCTGCCAAACT 62.351 66.667 0.00 0.00 0.00 2.66
913 944 1.445066 ACATCGTCTGCGCAGTCAG 60.445 57.895 34.70 25.45 38.14 3.51
955 986 2.066999 GCCTCCCTCCTCCAATCGT 61.067 63.158 0.00 0.00 0.00 3.73
999 1030 2.499205 CAGCCCGTTCATCCGCTA 59.501 61.111 0.00 0.00 0.00 4.26
1026 1057 4.214327 CCGCGCTCCCCTCTTCTC 62.214 72.222 5.56 0.00 0.00 2.87
1027 1058 4.214327 CGCGCTCCCCTCTTCTCC 62.214 72.222 5.56 0.00 0.00 3.71
1028 1059 3.855853 GCGCTCCCCTCTTCTCCC 61.856 72.222 0.00 0.00 0.00 4.30
1029 1060 2.042435 CGCTCCCCTCTTCTCCCT 60.042 66.667 0.00 0.00 0.00 4.20
1030 1061 1.687493 CGCTCCCCTCTTCTCCCTT 60.687 63.158 0.00 0.00 0.00 3.95
1031 1062 1.681486 CGCTCCCCTCTTCTCCCTTC 61.681 65.000 0.00 0.00 0.00 3.46
1040 1071 3.605412 TTCTCCCTTCCCGGCGGTA 62.605 63.158 26.32 5.99 0.00 4.02
1044 1075 1.303480 CCCTTCCCGGCGGTAAAAA 60.303 57.895 26.32 12.16 0.00 1.94
1046 1077 1.498611 CTTCCCGGCGGTAAAAACG 59.501 57.895 26.32 7.53 0.00 3.60
1135 1166 2.121538 TGATCAGCTCCGACGAGGG 61.122 63.158 0.00 0.00 41.52 4.30
1280 1311 0.774685 GAAAGGACAACGACGACGAC 59.225 55.000 15.32 0.00 42.66 4.34
1419 1453 0.824759 AGGCGAGGTACAGATTGGTC 59.175 55.000 0.00 0.00 0.00 4.02
1432 1466 1.201429 ATTGGTCTGCTCCCTTCCGT 61.201 55.000 0.00 0.00 0.00 4.69
1453 1487 3.634568 TTCGATCCACGCAATTTTTGT 57.365 38.095 0.00 0.00 42.26 2.83
1504 1539 4.007644 CTGCCTGGAGTCCGTGCA 62.008 66.667 20.54 20.54 0.00 4.57
1514 1549 2.560542 GGAGTCCGTGCATAGAGATGAT 59.439 50.000 0.00 0.00 34.73 2.45
1517 1552 3.638627 AGTCCGTGCATAGAGATGATCAA 59.361 43.478 0.00 0.00 34.73 2.57
1518 1553 3.986572 GTCCGTGCATAGAGATGATCAAG 59.013 47.826 0.00 0.00 34.73 3.02
1559 1594 1.089112 TCGTTCTGAATCGAGCCGTA 58.911 50.000 9.78 0.00 0.00 4.02
1626 1705 3.947910 TCAGAACGTACTTTTCCCGAT 57.052 42.857 0.00 0.00 0.00 4.18
1657 1736 3.500448 TGTTCAGCCTGTAACATGGAA 57.500 42.857 0.00 0.00 30.88 3.53
1688 1767 6.283694 TGCTGAAGTATCTGTCCATGTTATC 58.716 40.000 0.00 0.00 0.00 1.75
1759 1838 4.832266 TGGACTGTGTTGGCATTCTAAATT 59.168 37.500 0.00 0.00 0.00 1.82
1760 1839 5.304101 TGGACTGTGTTGGCATTCTAAATTT 59.696 36.000 0.00 0.00 0.00 1.82
1774 1856 8.072567 GCATTCTAAATTTCAGCTACTACATGG 58.927 37.037 0.00 0.00 0.00 3.66
1778 1860 5.762825 AATTTCAGCTACTACATGGCATG 57.237 39.130 25.31 25.31 37.23 4.06
1923 2005 5.741011 TGTCCCTGATTCTGTTGGTAATAC 58.259 41.667 0.00 0.00 0.00 1.89
1931 2013 9.093970 CTGATTCTGTTGGTAATACGATTACAA 57.906 33.333 15.11 5.76 0.00 2.41
1946 2028 6.163476 ACGATTACAATAGCAGAGTTGACAA 58.837 36.000 0.00 0.00 0.00 3.18
1949 2031 6.785488 TTACAATAGCAGAGTTGACAACAG 57.215 37.500 20.08 10.43 0.00 3.16
1965 2047 3.563808 ACAACAGAGCTTTTGTAATGCGA 59.436 39.130 7.35 0.00 34.12 5.10
1968 2050 2.744202 CAGAGCTTTTGTAATGCGACCT 59.256 45.455 0.00 0.00 36.73 3.85
2088 2173 0.605319 GTCATGCCACCGACAAGGAA 60.605 55.000 0.00 0.00 45.00 3.36
2091 2176 1.234615 ATGCCACCGACAAGGAAACG 61.235 55.000 0.00 0.00 45.00 3.60
2098 2183 1.539496 CCGACAAGGAAACGAAGTGGA 60.539 52.381 0.00 0.00 42.22 4.02
2102 2187 4.261031 CGACAAGGAAACGAAGTGGAAAAT 60.261 41.667 0.00 0.00 45.00 1.82
2113 2198 4.142816 CGAAGTGGAAAATACTGAGGCAAG 60.143 45.833 0.00 0.00 0.00 4.01
2122 2207 2.283145 ACTGAGGCAAGCATTCAAGT 57.717 45.000 0.00 0.00 0.00 3.16
2186 2271 3.123273 ACCTACCCTATGGCTTTGACAT 58.877 45.455 0.00 0.00 34.61 3.06
2219 2304 2.187163 GCTCTTCAGGTACGCCCC 59.813 66.667 0.00 0.00 34.57 5.80
2404 2494 0.178767 AGGCTATTCATGCAGTGCGA 59.821 50.000 11.20 0.00 0.00 5.10
2620 2757 7.276658 GGCTGGATTGATCGTTATACTCATTAG 59.723 40.741 0.00 0.00 0.00 1.73
2644 2781 5.356882 TGTTTAGCATGCAGTTGTAACTC 57.643 39.130 21.98 5.91 37.08 3.01
2656 2793 5.705905 GCAGTTGTAACTCCTTGATAAACCT 59.294 40.000 0.00 0.00 37.08 3.50
2695 2832 9.860898 AATATTTTTCTTATCAAGACTGGTTGC 57.139 29.630 0.00 0.00 37.23 4.17
2766 2904 2.296752 TCGTCGGTGTTCTTTGTATGGA 59.703 45.455 0.00 0.00 0.00 3.41
2769 2907 4.201685 CGTCGGTGTTCTTTGTATGGATTC 60.202 45.833 0.00 0.00 0.00 2.52
2831 2970 4.034510 GCAGATCATTTACGACAAGGGAAG 59.965 45.833 0.00 0.00 0.00 3.46
2841 2980 0.037447 ACAAGGGAAGAGGCAAGAGC 59.963 55.000 0.00 0.00 41.10 4.09
2849 2988 1.739562 GAGGCAAGAGCTGTGGACG 60.740 63.158 0.00 0.00 41.70 4.79
2905 3044 4.148871 CCATCTGCGTGTGAGTATATTTCG 59.851 45.833 0.00 0.00 0.00 3.46
3029 3170 3.719268 AGCACTATGGTTGGAATGTCA 57.281 42.857 0.00 0.00 0.00 3.58
3199 3358 2.597455 ACACAAGCCAACCTAATTGCT 58.403 42.857 0.00 0.00 36.93 3.91
3208 3367 3.619038 CCAACCTAATTGCTCTCTTCGTC 59.381 47.826 0.00 0.00 36.93 4.20
3303 3464 3.834489 TTTGTGTACCTCGGTTTACCA 57.166 42.857 0.00 0.00 35.14 3.25
3402 3617 2.626780 GGCTTGGAAGGGACGCAAC 61.627 63.158 0.00 0.00 0.00 4.17
3403 3618 2.966309 GCTTGGAAGGGACGCAACG 61.966 63.158 0.00 0.00 0.00 4.10
3404 3619 2.966309 CTTGGAAGGGACGCAACGC 61.966 63.158 0.00 0.00 0.00 4.84
3405 3620 3.758973 TTGGAAGGGACGCAACGCA 62.759 57.895 0.00 0.00 0.00 5.24
3406 3621 2.975799 GGAAGGGACGCAACGCAA 60.976 61.111 0.00 0.00 0.00 4.85
3433 3649 3.372206 CGAGTTTGAGTTGCAAGATAGGG 59.628 47.826 0.00 0.00 37.87 3.53
3442 3658 3.281727 TGCAAGATAGGGATGAACACC 57.718 47.619 0.00 0.00 0.00 4.16
3483 3699 1.068541 GTTTTGCAGGTTTCGCTAGGG 60.069 52.381 0.00 0.00 0.00 3.53
3508 3724 5.969423 ACATCATTAGTTTTCTTGCCATGG 58.031 37.500 7.63 7.63 0.00 3.66
3509 3725 4.454728 TCATTAGTTTTCTTGCCATGGC 57.545 40.909 30.54 30.54 42.35 4.40
3525 3742 4.514816 GCCATGGCTTCTCTCTTTCTAATC 59.485 45.833 29.98 0.00 38.26 1.75
3531 3752 7.551585 TGGCTTCTCTCTTTCTAATCTTACTG 58.448 38.462 0.00 0.00 0.00 2.74
3553 3776 2.688446 CCTCCGTAGCTGATAGTGTCAA 59.312 50.000 0.00 0.00 36.14 3.18
3608 3835 7.690454 TTCATAAATCCTATTCCCTCTGTCA 57.310 36.000 0.00 0.00 0.00 3.58
3623 3850 5.409826 CCCTCTGTCACAAAATAAGTGTCTC 59.590 44.000 0.00 0.00 38.16 3.36
3625 3852 6.483307 CCTCTGTCACAAAATAAGTGTCTCAA 59.517 38.462 0.00 0.00 38.16 3.02
3626 3853 7.246674 TCTGTCACAAAATAAGTGTCTCAAC 57.753 36.000 0.00 0.00 38.16 3.18
3627 3854 7.047891 TCTGTCACAAAATAAGTGTCTCAACT 58.952 34.615 0.00 0.00 38.16 3.16
3628 3855 7.552687 TCTGTCACAAAATAAGTGTCTCAACTT 59.447 33.333 0.00 0.00 42.89 2.66
3629 3856 8.050778 TGTCACAAAATAAGTGTCTCAACTTT 57.949 30.769 0.00 0.00 40.77 2.66
3630 3857 7.967854 TGTCACAAAATAAGTGTCTCAACTTTG 59.032 33.333 0.00 0.00 40.77 2.77
3631 3858 7.968405 GTCACAAAATAAGTGTCTCAACTTTGT 59.032 33.333 0.00 0.00 40.77 2.83
3639 3866 6.896021 AGTGTCTCAACTTTGTACTAGCTA 57.104 37.500 0.00 0.00 0.00 3.32
3807 4036 8.958119 AGAGATTATATTTCAGGCGTAAAACA 57.042 30.769 0.00 0.00 0.00 2.83
3819 4048 4.269363 AGGCGTAAAACATCGTGTATTAGC 59.731 41.667 0.00 0.00 0.00 3.09
3828 4057 3.581024 TCGTGTATTAGCAACGGAACT 57.419 42.857 0.00 0.00 0.00 3.01
3834 4063 3.695830 ATTAGCAACGGAACTGAAGGA 57.304 42.857 0.00 0.00 0.00 3.36
3837 4066 2.650322 AGCAACGGAACTGAAGGAAAA 58.350 42.857 0.00 0.00 0.00 2.29
3838 4067 3.222603 AGCAACGGAACTGAAGGAAAAT 58.777 40.909 0.00 0.00 0.00 1.82
3839 4068 3.636764 AGCAACGGAACTGAAGGAAAATT 59.363 39.130 0.00 0.00 0.00 1.82
3840 4069 4.825085 AGCAACGGAACTGAAGGAAAATTA 59.175 37.500 0.00 0.00 0.00 1.40
3841 4070 4.915667 GCAACGGAACTGAAGGAAAATTAC 59.084 41.667 0.00 0.00 0.00 1.89
3911 4140 2.372264 ACACATCCAGACATGCAATCC 58.628 47.619 0.00 0.00 0.00 3.01
3912 4141 2.025605 ACACATCCAGACATGCAATCCT 60.026 45.455 0.00 0.00 0.00 3.24
3913 4142 3.200605 ACACATCCAGACATGCAATCCTA 59.799 43.478 0.00 0.00 0.00 2.94
3914 4143 4.141321 ACACATCCAGACATGCAATCCTAT 60.141 41.667 0.00 0.00 0.00 2.57
3915 4144 4.825634 CACATCCAGACATGCAATCCTATT 59.174 41.667 0.00 0.00 0.00 1.73
3916 4145 5.048921 CACATCCAGACATGCAATCCTATTC 60.049 44.000 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.179081 GTCTTAGTCGTGATGGGGGC 60.179 60.000 0.00 0.00 0.00 5.80
10 11 0.102481 CGTCTTAGTCGTGATGGGGG 59.898 60.000 0.00 0.00 0.00 5.40
11 12 0.527817 GCGTCTTAGTCGTGATGGGG 60.528 60.000 0.68 0.00 0.00 4.96
16 17 0.167470 CTTCGGCGTCTTAGTCGTGA 59.833 55.000 6.85 0.00 40.52 4.35
28 29 0.179084 TATGCTTTCCTCCTTCGGCG 60.179 55.000 0.00 0.00 0.00 6.46
53 54 4.578516 CGCTGGATTTGTGGTTAATGGATA 59.421 41.667 0.00 0.00 0.00 2.59
60 61 1.472082 CATGCGCTGGATTTGTGGTTA 59.528 47.619 9.73 0.00 0.00 2.85
67 68 2.959967 TGGAACATGCGCTGGATTT 58.040 47.368 9.73 0.00 0.00 2.17
80 81 3.654414 GACGACATATGGGAGATGGAAC 58.346 50.000 7.80 0.00 0.00 3.62
85 86 2.094494 GCATCGACGACATATGGGAGAT 60.094 50.000 7.80 6.76 0.00 2.75
89 90 1.269778 ACTGCATCGACGACATATGGG 60.270 52.381 7.80 0.96 0.00 4.00
93 94 0.172352 TGCACTGCATCGACGACATA 59.828 50.000 0.00 0.00 31.71 2.29
141 151 2.976840 TTTGCTCCAACATCGGCGC 61.977 57.895 0.00 0.00 37.29 6.53
143 153 1.154225 CGTTTGCTCCAACATCGGC 60.154 57.895 0.00 0.00 0.00 5.54
148 158 1.484227 CGACGACGTTTGCTCCAACA 61.484 55.000 0.13 0.00 34.56 3.33
150 160 2.591311 GCGACGACGTTTGCTCCAA 61.591 57.895 16.11 0.00 41.98 3.53
175 185 1.009829 GCACATTGTCATCCGACTCC 58.990 55.000 0.00 0.00 43.06 3.85
179 189 0.036022 TGGTGCACATTGTCATCCGA 59.964 50.000 20.43 0.00 0.00 4.55
181 191 1.246649 TGTGGTGCACATTGTCATCC 58.753 50.000 20.43 0.00 39.62 3.51
184 194 1.031235 CCTTGTGGTGCACATTGTCA 58.969 50.000 20.43 3.64 44.16 3.58
189 199 1.538047 GACATCCTTGTGGTGCACAT 58.462 50.000 20.43 0.00 44.16 3.21
190 200 0.884259 CGACATCCTTGTGGTGCACA 60.884 55.000 20.43 1.62 43.02 4.57
193 204 2.690778 GGCGACATCCTTGTGGTGC 61.691 63.158 0.00 0.00 35.79 5.01
212 223 2.359850 TTGGGATGTCGTGGCAGC 60.360 61.111 0.00 0.00 0.00 5.25
214 225 0.888736 CAAGTTGGGATGTCGTGGCA 60.889 55.000 0.00 0.00 0.00 4.92
215 226 0.605319 TCAAGTTGGGATGTCGTGGC 60.605 55.000 2.34 0.00 0.00 5.01
228 239 9.736023 GTATTTGAAAATCAGTCTGTTCAAGTT 57.264 29.630 13.86 10.13 40.14 2.66
229 240 8.902806 TGTATTTGAAAATCAGTCTGTTCAAGT 58.097 29.630 13.67 13.54 40.14 3.16
247 258 8.515414 CGTCTCTATGGTAGATGATGTATTTGA 58.485 37.037 0.00 0.00 33.66 2.69
253 264 5.471797 CAGTCGTCTCTATGGTAGATGATGT 59.528 44.000 0.00 0.00 40.25 3.06
259 270 2.172930 AGGCAGTCGTCTCTATGGTAGA 59.827 50.000 0.00 0.00 0.00 2.59
261 272 2.573369 GAGGCAGTCGTCTCTATGGTA 58.427 52.381 0.00 0.00 40.94 3.25
273 284 0.320771 TCTTCTTTGGCGAGGCAGTC 60.321 55.000 0.00 0.00 0.00 3.51
275 286 1.457346 ATTCTTCTTTGGCGAGGCAG 58.543 50.000 0.00 0.00 0.00 4.85
295 306 5.353678 GTGATGCTGAATAAAGAAGCTCTGT 59.646 40.000 0.00 0.00 37.82 3.41
297 308 4.880696 GGTGATGCTGAATAAAGAAGCTCT 59.119 41.667 0.00 0.00 37.82 4.09
318 329 2.985282 TTCGGTAGTGGCGACGGT 60.985 61.111 0.00 0.00 0.00 4.83
319 330 2.202570 CTTCGGTAGTGGCGACGG 60.203 66.667 0.00 0.00 0.00 4.79
327 338 0.243095 GACGTCTTGGCTTCGGTAGT 59.757 55.000 8.70 0.00 0.00 2.73
330 341 2.049433 CGACGTCTTGGCTTCGGT 60.049 61.111 14.70 0.00 0.00 4.69
350 361 7.122204 CCCCTAGTAGTTTAGGTTTTTGGATTG 59.878 40.741 0.00 0.00 38.86 2.67
351 362 7.179966 CCCCTAGTAGTTTAGGTTTTTGGATT 58.820 38.462 0.00 0.00 38.86 3.01
366 377 5.478503 TTTAGTTCTAGGCCCCTAGTAGT 57.521 43.478 18.32 14.71 44.59 2.73
370 381 6.803366 TTAGTTTTAGTTCTAGGCCCCTAG 57.197 41.667 14.00 14.00 45.38 3.02
376 387 8.336080 CGGATCATTTTAGTTTTAGTTCTAGGC 58.664 37.037 0.00 0.00 0.00 3.93
378 389 8.336080 GCCGGATCATTTTAGTTTTAGTTCTAG 58.664 37.037 5.05 0.00 0.00 2.43
389 401 0.818040 GGCCGCCGGATCATTTTAGT 60.818 55.000 7.68 0.00 0.00 2.24
405 417 4.176752 GTCGATGGTGAGGGGGCC 62.177 72.222 0.00 0.00 0.00 5.80
411 439 0.526211 TCTTGGTCGTCGATGGTGAG 59.474 55.000 4.48 0.00 0.00 3.51
459 488 2.338785 GCAGCCAAGAGAGCCAACC 61.339 63.158 0.00 0.00 0.00 3.77
465 494 2.818714 CCGCAGCAGCCAAGAGAG 60.819 66.667 0.00 0.00 37.52 3.20
484 513 0.958822 GTTACAACCTGCCAACCCTG 59.041 55.000 0.00 0.00 0.00 4.45
485 514 0.850784 AGTTACAACCTGCCAACCCT 59.149 50.000 0.00 0.00 0.00 4.34
486 515 2.572209 TAGTTACAACCTGCCAACCC 57.428 50.000 0.00 0.00 0.00 4.11
487 516 4.076394 TGATTAGTTACAACCTGCCAACC 58.924 43.478 0.00 0.00 0.00 3.77
488 517 5.001232 TCTGATTAGTTACAACCTGCCAAC 58.999 41.667 0.00 0.00 0.00 3.77
489 518 5.235850 TCTGATTAGTTACAACCTGCCAA 57.764 39.130 0.00 0.00 0.00 4.52
490 519 4.901197 TCTGATTAGTTACAACCTGCCA 57.099 40.909 0.00 0.00 0.00 4.92
491 520 4.816925 GGATCTGATTAGTTACAACCTGCC 59.183 45.833 0.00 0.00 0.00 4.85
492 521 5.428253 TGGATCTGATTAGTTACAACCTGC 58.572 41.667 0.00 0.00 0.00 4.85
493 522 6.708054 GGATGGATCTGATTAGTTACAACCTG 59.292 42.308 1.10 0.00 30.51 4.00
494 523 6.617371 AGGATGGATCTGATTAGTTACAACCT 59.383 38.462 4.30 4.30 35.82 3.50
495 524 6.831976 AGGATGGATCTGATTAGTTACAACC 58.168 40.000 0.18 0.18 32.32 3.77
496 525 8.616076 CAAAGGATGGATCTGATTAGTTACAAC 58.384 37.037 0.00 0.00 0.00 3.32
497 526 8.548025 TCAAAGGATGGATCTGATTAGTTACAA 58.452 33.333 0.00 0.00 0.00 2.41
498 527 7.987458 GTCAAAGGATGGATCTGATTAGTTACA 59.013 37.037 0.00 0.00 0.00 2.41
499 528 7.169982 CGTCAAAGGATGGATCTGATTAGTTAC 59.830 40.741 0.00 0.00 0.00 2.50
500 529 7.069455 TCGTCAAAGGATGGATCTGATTAGTTA 59.931 37.037 0.00 0.00 0.00 2.24
501 530 6.051717 CGTCAAAGGATGGATCTGATTAGTT 58.948 40.000 0.00 0.00 0.00 2.24
502 531 5.363868 TCGTCAAAGGATGGATCTGATTAGT 59.636 40.000 0.00 0.00 0.00 2.24
503 532 5.847304 TCGTCAAAGGATGGATCTGATTAG 58.153 41.667 0.00 0.00 0.00 1.73
504 533 5.869649 TCGTCAAAGGATGGATCTGATTA 57.130 39.130 0.00 0.00 0.00 1.75
505 534 4.760530 TCGTCAAAGGATGGATCTGATT 57.239 40.909 0.00 0.00 0.00 2.57
506 535 4.760530 TTCGTCAAAGGATGGATCTGAT 57.239 40.909 0.00 0.00 0.00 2.90
507 536 4.697514 GATTCGTCAAAGGATGGATCTGA 58.302 43.478 0.00 0.00 40.54 3.27
508 537 3.492383 CGATTCGTCAAAGGATGGATCTG 59.508 47.826 0.00 0.00 41.24 2.90
509 538 3.133003 ACGATTCGTCAAAGGATGGATCT 59.867 43.478 5.75 0.00 41.24 2.75
510 539 3.458189 ACGATTCGTCAAAGGATGGATC 58.542 45.455 5.75 0.00 40.37 3.36
511 540 3.543680 ACGATTCGTCAAAGGATGGAT 57.456 42.857 5.75 0.00 33.69 3.41
512 541 4.665833 ATACGATTCGTCAAAGGATGGA 57.334 40.909 16.10 0.00 41.54 3.41
513 542 5.286320 CGATATACGATTCGTCAAAGGATGG 59.714 44.000 16.10 0.00 45.77 3.51
514 543 5.856986 ACGATATACGATTCGTCAAAGGATG 59.143 40.000 16.10 2.47 44.72 3.51
515 544 5.856986 CACGATATACGATTCGTCAAAGGAT 59.143 40.000 16.10 5.09 46.06 3.24
516 545 5.209977 CACGATATACGATTCGTCAAAGGA 58.790 41.667 16.10 0.00 46.06 3.36
517 546 4.974275 ACACGATATACGATTCGTCAAAGG 59.026 41.667 16.10 6.47 46.06 3.11
518 547 5.108368 CCACACGATATACGATTCGTCAAAG 60.108 44.000 16.10 7.42 46.06 2.77
519 548 4.736307 CCACACGATATACGATTCGTCAAA 59.264 41.667 16.10 2.78 46.06 2.69
520 549 4.035441 TCCACACGATATACGATTCGTCAA 59.965 41.667 16.10 5.42 46.06 3.18
521 550 3.560896 TCCACACGATATACGATTCGTCA 59.439 43.478 16.10 5.43 46.06 4.35
522 551 4.137849 TCCACACGATATACGATTCGTC 57.862 45.455 16.10 0.00 46.06 4.20
524 553 3.058432 ACCTCCACACGATATACGATTCG 60.058 47.826 4.14 4.14 45.77 3.34
525 554 4.500603 ACCTCCACACGATATACGATTC 57.499 45.455 0.00 0.00 45.77 2.52
526 555 4.931661 AACCTCCACACGATATACGATT 57.068 40.909 0.00 0.00 45.77 3.34
527 556 4.098960 ACAAACCTCCACACGATATACGAT 59.901 41.667 0.00 0.00 45.77 3.73
528 557 3.444742 ACAAACCTCCACACGATATACGA 59.555 43.478 0.00 0.00 45.77 3.43
530 559 6.490566 AAAACAAACCTCCACACGATATAC 57.509 37.500 0.00 0.00 0.00 1.47
531 560 8.095792 TCTAAAAACAAACCTCCACACGATATA 58.904 33.333 0.00 0.00 0.00 0.86
532 561 6.938030 TCTAAAAACAAACCTCCACACGATAT 59.062 34.615 0.00 0.00 0.00 1.63
533 562 6.289834 TCTAAAAACAAACCTCCACACGATA 58.710 36.000 0.00 0.00 0.00 2.92
534 563 5.127491 TCTAAAAACAAACCTCCACACGAT 58.873 37.500 0.00 0.00 0.00 3.73
535 564 4.515361 TCTAAAAACAAACCTCCACACGA 58.485 39.130 0.00 0.00 0.00 4.35
536 565 4.886247 TCTAAAAACAAACCTCCACACG 57.114 40.909 0.00 0.00 0.00 4.49
537 566 5.977129 CACATCTAAAAACAAACCTCCACAC 59.023 40.000 0.00 0.00 0.00 3.82
538 567 5.654650 ACACATCTAAAAACAAACCTCCACA 59.345 36.000 0.00 0.00 0.00 4.17
539 568 5.977129 CACACATCTAAAAACAAACCTCCAC 59.023 40.000 0.00 0.00 0.00 4.02
540 569 5.451242 GCACACATCTAAAAACAAACCTCCA 60.451 40.000 0.00 0.00 0.00 3.86
541 570 4.982295 GCACACATCTAAAAACAAACCTCC 59.018 41.667 0.00 0.00 0.00 4.30
542 571 5.587289 TGCACACATCTAAAAACAAACCTC 58.413 37.500 0.00 0.00 0.00 3.85
543 572 5.590530 TGCACACATCTAAAAACAAACCT 57.409 34.783 0.00 0.00 0.00 3.50
557 586 5.255687 TGAAGACATTTAGGATGCACACAT 58.744 37.500 0.00 0.00 39.98 3.21
558 587 4.650734 TGAAGACATTTAGGATGCACACA 58.349 39.130 0.00 0.00 0.00 3.72
559 588 5.627499 TTGAAGACATTTAGGATGCACAC 57.373 39.130 0.00 0.00 0.00 3.82
560 589 5.534278 TGTTTGAAGACATTTAGGATGCACA 59.466 36.000 0.00 0.00 0.00 4.57
561 590 6.012658 TGTTTGAAGACATTTAGGATGCAC 57.987 37.500 0.00 0.00 0.00 4.57
562 591 6.660521 AGATGTTTGAAGACATTTAGGATGCA 59.339 34.615 0.00 0.00 40.21 3.96
563 592 7.093322 AGATGTTTGAAGACATTTAGGATGC 57.907 36.000 0.00 0.00 40.21 3.91
564 593 8.517878 ACAAGATGTTTGAAGACATTTAGGATG 58.482 33.333 0.00 0.00 40.21 3.51
565 594 8.641498 ACAAGATGTTTGAAGACATTTAGGAT 57.359 30.769 0.00 0.00 40.21 3.24
566 595 8.352201 CAACAAGATGTTTGAAGACATTTAGGA 58.648 33.333 0.00 0.00 38.77 2.94
567 596 8.352201 TCAACAAGATGTTTGAAGACATTTAGG 58.648 33.333 0.00 0.00 38.77 2.69
568 597 9.903682 ATCAACAAGATGTTTGAAGACATTTAG 57.096 29.630 0.00 0.00 38.77 1.85
584 613 2.366533 CAGCCTCTGCATCAACAAGAT 58.633 47.619 0.00 0.00 41.13 2.40
585 614 1.612462 CCAGCCTCTGCATCAACAAGA 60.612 52.381 0.00 0.00 41.13 3.02
586 615 0.809385 CCAGCCTCTGCATCAACAAG 59.191 55.000 0.00 0.00 41.13 3.16
587 616 0.609957 CCCAGCCTCTGCATCAACAA 60.610 55.000 0.00 0.00 41.13 2.83
588 617 1.001764 CCCAGCCTCTGCATCAACA 60.002 57.895 0.00 0.00 41.13 3.33
589 618 1.751927 CCCCAGCCTCTGCATCAAC 60.752 63.158 0.00 0.00 41.13 3.18
590 619 2.679092 CCCCAGCCTCTGCATCAA 59.321 61.111 0.00 0.00 41.13 2.57
591 620 4.119363 GCCCCAGCCTCTGCATCA 62.119 66.667 0.00 0.00 41.13 3.07
592 621 1.987807 TTAGCCCCAGCCTCTGCATC 61.988 60.000 0.00 0.00 41.25 3.91
593 622 2.002977 TTAGCCCCAGCCTCTGCAT 61.003 57.895 0.00 0.00 41.25 3.96
594 623 2.610546 TTAGCCCCAGCCTCTGCA 60.611 61.111 0.00 0.00 41.25 4.41
595 624 1.338136 TAGTTAGCCCCAGCCTCTGC 61.338 60.000 0.00 0.00 41.25 4.26
596 625 0.755686 CTAGTTAGCCCCAGCCTCTG 59.244 60.000 0.00 0.00 41.25 3.35
597 626 0.340208 ACTAGTTAGCCCCAGCCTCT 59.660 55.000 0.00 0.00 41.25 3.69
598 627 1.687660 GTACTAGTTAGCCCCAGCCTC 59.312 57.143 0.00 0.00 41.25 4.70
599 628 1.291335 AGTACTAGTTAGCCCCAGCCT 59.709 52.381 0.00 0.00 41.25 4.58
600 629 1.687660 GAGTACTAGTTAGCCCCAGCC 59.312 57.143 0.00 0.00 41.25 4.85
601 630 1.687660 GGAGTACTAGTTAGCCCCAGC 59.312 57.143 0.00 0.00 40.32 4.85
602 631 2.091222 AGGGAGTACTAGTTAGCCCCAG 60.091 54.545 17.99 0.00 36.19 4.45
603 632 1.935196 AGGGAGTACTAGTTAGCCCCA 59.065 52.381 17.99 0.00 36.19 4.96
604 633 2.596346 GAGGGAGTACTAGTTAGCCCC 58.404 57.143 17.99 15.01 36.19 5.80
605 634 2.596346 GGAGGGAGTACTAGTTAGCCC 58.404 57.143 15.25 15.25 35.79 5.19
606 635 2.228925 CGGAGGGAGTACTAGTTAGCC 58.771 57.143 0.00 0.00 0.00 3.93
607 636 2.877786 GACGGAGGGAGTACTAGTTAGC 59.122 54.545 0.00 0.00 0.00 3.09
608 637 3.475575 GGACGGAGGGAGTACTAGTTAG 58.524 54.545 0.00 0.00 0.00 2.34
609 638 2.158900 CGGACGGAGGGAGTACTAGTTA 60.159 54.545 0.00 0.00 0.00 2.24
610 639 1.407989 CGGACGGAGGGAGTACTAGTT 60.408 57.143 0.00 0.00 0.00 2.24
611 640 0.179936 CGGACGGAGGGAGTACTAGT 59.820 60.000 0.00 0.00 0.00 2.57
612 641 0.534652 CCGGACGGAGGGAGTACTAG 60.535 65.000 4.40 0.00 37.50 2.57
613 642 0.982852 TCCGGACGGAGGGAGTACTA 60.983 60.000 9.76 0.00 39.76 1.82
614 643 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
615 644 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
616 645 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
617 646 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
618 647 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
619 648 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
620 649 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
621 650 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
622 651 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
623 652 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
624 653 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
625 654 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
626 655 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
627 656 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
628 657 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
629 658 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
630 659 8.469200 TCATCCATTTTGATGACAAGTATTTCC 58.531 33.333 0.00 0.00 44.65 3.13
642 671 6.578944 ACATCCATGTTCATCCATTTTGATG 58.421 36.000 0.00 0.00 37.90 3.07
643 672 6.801718 ACATCCATGTTCATCCATTTTGAT 57.198 33.333 0.00 0.00 37.90 2.57
644 673 7.781219 AGATACATCCATGTTCATCCATTTTGA 59.219 33.333 0.00 0.00 41.97 2.69
645 674 7.948357 AGATACATCCATGTTCATCCATTTTG 58.052 34.615 0.00 0.00 41.97 2.44
646 675 9.293404 CTAGATACATCCATGTTCATCCATTTT 57.707 33.333 0.00 0.00 41.97 1.82
647 676 8.663167 TCTAGATACATCCATGTTCATCCATTT 58.337 33.333 0.00 0.00 41.97 2.32
648 677 8.211030 TCTAGATACATCCATGTTCATCCATT 57.789 34.615 0.00 0.00 41.97 3.16
649 678 7.803487 TCTAGATACATCCATGTTCATCCAT 57.197 36.000 0.00 0.00 41.97 3.41
650 679 7.290948 AGTTCTAGATACATCCATGTTCATCCA 59.709 37.037 0.00 0.00 41.97 3.41
651 680 7.675062 AGTTCTAGATACATCCATGTTCATCC 58.325 38.462 0.00 0.00 41.97 3.51
682 711 9.499479 GTCATTGAAATGGATGTATCTAGATGT 57.501 33.333 15.79 1.25 37.03 3.06
683 712 9.498176 TGTCATTGAAATGGATGTATCTAGATG 57.502 33.333 15.79 0.00 37.03 2.90
685 714 9.551734 CTTGTCATTGAAATGGATGTATCTAGA 57.448 33.333 0.00 0.00 37.03 2.43
686 715 9.334947 ACTTGTCATTGAAATGGATGTATCTAG 57.665 33.333 3.31 0.00 37.03 2.43
688 717 9.857656 ATACTTGTCATTGAAATGGATGTATCT 57.142 29.630 3.31 0.00 37.03 1.98
693 722 9.225201 CGTAAATACTTGTCATTGAAATGGATG 57.775 33.333 3.31 0.00 37.03 3.51
694 723 8.405531 CCGTAAATACTTGTCATTGAAATGGAT 58.594 33.333 3.31 0.00 37.03 3.41
695 724 7.608376 TCCGTAAATACTTGTCATTGAAATGGA 59.392 33.333 3.31 0.00 37.03 3.41
696 725 7.696453 GTCCGTAAATACTTGTCATTGAAATGG 59.304 37.037 3.31 0.00 37.03 3.16
697 726 7.425309 CGTCCGTAAATACTTGTCATTGAAATG 59.575 37.037 0.00 0.00 37.75 2.32
698 727 7.413657 CCGTCCGTAAATACTTGTCATTGAAAT 60.414 37.037 0.00 0.00 0.00 2.17
699 728 6.128499 CCGTCCGTAAATACTTGTCATTGAAA 60.128 38.462 0.00 0.00 0.00 2.69
700 729 5.349270 CCGTCCGTAAATACTTGTCATTGAA 59.651 40.000 0.00 0.00 0.00 2.69
701 730 4.865925 CCGTCCGTAAATACTTGTCATTGA 59.134 41.667 0.00 0.00 0.00 2.57
702 731 4.865925 TCCGTCCGTAAATACTTGTCATTG 59.134 41.667 0.00 0.00 0.00 2.82
703 732 5.075858 TCCGTCCGTAAATACTTGTCATT 57.924 39.130 0.00 0.00 0.00 2.57
704 733 4.441079 CCTCCGTCCGTAAATACTTGTCAT 60.441 45.833 0.00 0.00 0.00 3.06
705 734 3.119388 CCTCCGTCCGTAAATACTTGTCA 60.119 47.826 0.00 0.00 0.00 3.58
706 735 3.129287 TCCTCCGTCCGTAAATACTTGTC 59.871 47.826 0.00 0.00 0.00 3.18
707 736 3.091545 TCCTCCGTCCGTAAATACTTGT 58.908 45.455 0.00 0.00 0.00 3.16
708 737 3.788333 TCCTCCGTCCGTAAATACTTG 57.212 47.619 0.00 0.00 0.00 3.16
709 738 3.766051 ACTTCCTCCGTCCGTAAATACTT 59.234 43.478 0.00 0.00 0.00 2.24
710 739 3.359950 ACTTCCTCCGTCCGTAAATACT 58.640 45.455 0.00 0.00 0.00 2.12
711 740 3.790152 ACTTCCTCCGTCCGTAAATAC 57.210 47.619 0.00 0.00 0.00 1.89
712 741 4.520492 GGATACTTCCTCCGTCCGTAAATA 59.480 45.833 0.00 0.00 39.14 1.40
713 742 3.320256 GGATACTTCCTCCGTCCGTAAAT 59.680 47.826 0.00 0.00 39.14 1.40
714 743 2.689983 GGATACTTCCTCCGTCCGTAAA 59.310 50.000 0.00 0.00 39.14 2.01
715 744 2.301346 GGATACTTCCTCCGTCCGTAA 58.699 52.381 0.00 0.00 39.14 3.18
716 745 1.972872 GGATACTTCCTCCGTCCGTA 58.027 55.000 0.00 0.00 39.14 4.02
717 746 2.804549 GGATACTTCCTCCGTCCGT 58.195 57.895 0.00 0.00 39.14 4.69
772 801 4.803426 GGCAGACCTCCACGCGAG 62.803 72.222 15.93 4.16 38.46 5.03
788 817 1.136305 CACAGGATACCTACACGTGGG 59.864 57.143 21.57 14.81 37.24 4.61
798 827 2.204748 TGGTACGCCACAGGATACC 58.795 57.895 9.02 9.02 40.46 2.73
987 1018 1.883084 GCTGGGTAGCGGATGAACG 60.883 63.158 0.00 0.00 40.67 3.95
1022 1053 3.605412 TACCGCCGGGAAGGGAGAA 62.605 63.158 8.57 0.00 41.48 2.87
1023 1054 3.605412 TTACCGCCGGGAAGGGAGA 62.605 63.158 8.57 0.00 41.48 3.71
1024 1055 2.187896 TTTTACCGCCGGGAAGGGAG 62.188 60.000 8.57 0.00 41.48 4.30
1025 1056 1.776975 TTTTTACCGCCGGGAAGGGA 61.777 55.000 8.57 2.14 41.48 4.20
1026 1057 1.303480 TTTTTACCGCCGGGAAGGG 60.303 57.895 8.57 5.91 41.48 3.95
1027 1058 1.878070 GTTTTTACCGCCGGGAAGG 59.122 57.895 8.57 2.32 44.97 3.46
1028 1059 1.498611 CGTTTTTACCGCCGGGAAG 59.501 57.895 8.57 0.00 36.97 3.46
1029 1060 1.965411 CCGTTTTTACCGCCGGGAA 60.965 57.895 8.57 0.49 36.84 3.97
1030 1061 2.358492 CCGTTTTTACCGCCGGGA 60.358 61.111 8.57 0.00 36.84 5.14
1031 1062 1.513836 TTTCCGTTTTTACCGCCGGG 61.514 55.000 8.57 0.00 40.78 5.73
1040 1071 2.018727 GCCCGTGGGTTTCCGTTTTT 62.019 55.000 6.82 0.00 37.65 1.94
1105 1136 1.446099 CTGATCACCACCACGTCGG 60.446 63.158 0.00 2.92 42.50 4.79
1396 1430 2.009774 CAATCTGTACCTCGCCTTTGG 58.990 52.381 0.00 0.00 0.00 3.28
1419 1453 0.108138 ATCGAAACGGAAGGGAGCAG 60.108 55.000 0.00 0.00 0.00 4.24
1432 1466 3.733224 CACAAAAATTGCGTGGATCGAAA 59.267 39.130 0.00 0.00 41.66 3.46
1504 1539 6.436738 AATCAGTGGCTTGATCATCTCTAT 57.563 37.500 0.00 0.00 36.81 1.98
1576 1611 7.431084 AGTGAACGTGCAACACTTAAATTAAAG 59.569 33.333 0.00 0.00 41.21 1.85
1578 1613 6.689241 CAGTGAACGTGCAACACTTAAATTAA 59.311 34.615 0.00 0.00 41.93 1.40
1589 1668 0.376852 TGAAGCAGTGAACGTGCAAC 59.623 50.000 0.00 0.00 43.82 4.17
1613 1692 7.333672 ACAATGAAAGTCTATCGGGAAAAGTAC 59.666 37.037 0.00 0.00 0.00 2.73
1626 1705 4.973168 ACAGGCTGAACAATGAAAGTCTA 58.027 39.130 23.66 0.00 0.00 2.59
1657 1736 3.169099 ACAGATACTTCAGCAGACCACT 58.831 45.455 0.00 0.00 0.00 4.00
1688 1767 2.101415 TGCTCATCGACAGTAAGGATGG 59.899 50.000 0.00 2.82 38.43 3.51
1759 1838 2.171237 AGCATGCCATGTAGTAGCTGAA 59.829 45.455 15.66 0.00 0.00 3.02
1760 1839 1.764723 AGCATGCCATGTAGTAGCTGA 59.235 47.619 15.66 0.00 0.00 4.26
1778 1860 1.086067 TGCACGCTATCTGCAGAAGC 61.086 55.000 27.24 27.24 39.76 3.86
1923 2005 6.090763 TGTTGTCAACTCTGCTATTGTAATCG 59.909 38.462 16.45 0.00 0.00 3.34
1931 2013 3.260380 AGCTCTGTTGTCAACTCTGCTAT 59.740 43.478 20.10 6.02 32.38 2.97
1946 2028 2.484264 GGTCGCATTACAAAAGCTCTGT 59.516 45.455 6.64 6.64 0.00 3.41
1949 2031 2.222819 CGAGGTCGCATTACAAAAGCTC 60.223 50.000 0.00 0.00 0.00 4.09
2088 2173 3.751698 GCCTCAGTATTTTCCACTTCGTT 59.248 43.478 0.00 0.00 0.00 3.85
2091 2176 4.379918 GCTTGCCTCAGTATTTTCCACTTC 60.380 45.833 0.00 0.00 0.00 3.01
2098 2183 5.244626 ACTTGAATGCTTGCCTCAGTATTTT 59.755 36.000 0.00 0.00 30.04 1.82
2102 2187 3.076621 CACTTGAATGCTTGCCTCAGTA 58.923 45.455 0.00 0.00 0.00 2.74
2113 2198 2.473984 GCTCAAAGTTGCACTTGAATGC 59.526 45.455 6.54 4.50 46.32 3.56
2122 2207 3.294493 GCCCGGCTCAAAGTTGCA 61.294 61.111 0.71 0.00 0.00 4.08
2219 2304 4.082733 TCACCTATGAGAACGTGAGAGTTG 60.083 45.833 0.00 0.00 34.00 3.16
2404 2494 0.462789 ACACCGACGAAACAGAACCT 59.537 50.000 0.00 0.00 0.00 3.50
2457 2548 4.733850 CACATCAGCGAAGTAAGACACTA 58.266 43.478 0.00 0.00 36.04 2.74
2470 2561 3.603173 CGTAAATGATCTGCACATCAGCG 60.603 47.826 10.52 8.23 42.56 5.18
2620 2757 5.519722 AGTTACAACTGCATGCTAAACAAC 58.480 37.500 20.33 14.70 37.98 3.32
2674 2811 6.899393 ATGCAACCAGTCTTGATAAGAAAA 57.101 33.333 0.00 0.00 39.67 2.29
2695 2832 2.843701 AGATAAGGCGAGGAAGCAATG 58.156 47.619 0.00 0.00 39.27 2.82
2831 2970 1.739562 CGTCCACAGCTCTTGCCTC 60.740 63.158 0.00 0.00 40.80 4.70
2841 2980 1.302511 CCAGTTTCCCCGTCCACAG 60.303 63.158 0.00 0.00 0.00 3.66
2849 2988 2.019156 GCATACTCAGCCAGTTTCCCC 61.019 57.143 0.00 0.00 36.43 4.81
3029 3170 0.614812 GCAAATGCAAACTGGGGGAT 59.385 50.000 0.00 0.00 41.59 3.85
3176 3335 3.860754 GCAATTAGGTTGGCTTGTGTTCC 60.861 47.826 0.00 0.00 38.29 3.62
3199 3358 8.365647 AGTAAACAAATTAGAAGGACGAAGAGA 58.634 33.333 0.00 0.00 0.00 3.10
3227 3388 3.117663 AGCTAAAAGGTCAAGGAACACCA 60.118 43.478 0.00 0.00 34.80 4.17
3303 3464 1.160329 GCTGTGGCGCCGATTATCTT 61.160 55.000 23.90 0.00 0.00 2.40
3406 3621 1.378531 TGCAACTCAAACTCGCAGTT 58.621 45.000 0.00 0.00 40.80 3.16
3442 3658 1.877443 CCAACACCTAAAACCCTCACG 59.123 52.381 0.00 0.00 0.00 4.35
3483 3699 6.532657 CCATGGCAAGAAAACTAATGATGTTC 59.467 38.462 0.00 0.00 0.00 3.18
3508 3724 6.478673 GGCAGTAAGATTAGAAAGAGAGAAGC 59.521 42.308 0.00 0.00 0.00 3.86
3509 3725 7.781056 AGGCAGTAAGATTAGAAAGAGAGAAG 58.219 38.462 0.00 0.00 0.00 2.85
3525 3742 1.103803 TCAGCTACGGAGGCAGTAAG 58.896 55.000 0.00 0.00 0.00 2.34
3531 3752 1.001158 GACACTATCAGCTACGGAGGC 60.001 57.143 0.00 0.00 0.00 4.70
3597 3824 5.690865 ACACTTATTTTGTGACAGAGGGAA 58.309 37.500 0.00 0.00 38.65 3.97
3604 3831 7.624360 AAGTTGAGACACTTATTTTGTGACA 57.376 32.000 0.00 0.00 35.10 3.58
3608 3835 9.174166 AGTACAAAGTTGAGACACTTATTTTGT 57.826 29.630 0.00 0.00 39.79 2.83
3646 3873 8.451908 AAGTGTCTTGAGCTTAGTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
3647 3874 9.726438 ATAAGTGTCTTGAGCTTAGTACAAATT 57.274 29.630 0.00 0.00 0.00 1.82
3649 3876 9.555727 AAATAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
3650 3877 9.555727 AAAATAAGTGTCTTGAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
3652 3879 8.443937 CCAAAATAAGTGTCTTGAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
3653 3880 7.606456 CCCAAAATAAGTGTCTTGAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
3654 3881 6.431234 CCCAAAATAAGTGTCTTGAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
3655 3882 6.655003 TCCCAAAATAAGTGTCTTGAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
3656 3883 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
3658 3885 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
3659 3886 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
3660 3887 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
3661 3888 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
3662 3889 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
3807 4036 3.863424 CAGTTCCGTTGCTAATACACGAT 59.137 43.478 0.00 0.00 0.00 3.73
3819 4048 6.067263 TGTAATTTTCCTTCAGTTCCGTTG 57.933 37.500 0.00 0.00 0.00 4.10
3838 4067 9.585099 GAGACCAAATATTGATGCAAAATGTAA 57.415 29.630 7.96 0.00 0.00 2.41
3839 4068 8.747471 TGAGACCAAATATTGATGCAAAATGTA 58.253 29.630 7.96 0.00 0.00 2.29
3840 4069 7.613585 TGAGACCAAATATTGATGCAAAATGT 58.386 30.769 7.96 0.00 0.00 2.71
3841 4070 7.223971 CCTGAGACCAAATATTGATGCAAAATG 59.776 37.037 7.96 0.00 0.00 2.32
3853 4082 8.324191 TGTTTAGAGATCCTGAGACCAAATAT 57.676 34.615 0.00 0.00 0.00 1.28
3854 4083 7.733773 TGTTTAGAGATCCTGAGACCAAATA 57.266 36.000 0.00 0.00 0.00 1.40
3911 4140 6.470877 GCAAGTCGTCTAGTGAAGAAGAATAG 59.529 42.308 0.00 0.00 43.17 1.73
3912 4141 6.151312 AGCAAGTCGTCTAGTGAAGAAGAATA 59.849 38.462 0.00 0.00 43.17 1.75
3913 4142 5.047660 AGCAAGTCGTCTAGTGAAGAAGAAT 60.048 40.000 0.00 0.00 43.17 2.40
3914 4143 4.278669 AGCAAGTCGTCTAGTGAAGAAGAA 59.721 41.667 0.00 0.00 43.17 2.52
3915 4144 3.821600 AGCAAGTCGTCTAGTGAAGAAGA 59.178 43.478 0.00 0.00 39.97 2.87
3916 4145 4.167554 AGCAAGTCGTCTAGTGAAGAAG 57.832 45.455 0.00 0.00 35.47 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.