>input_sequence_40602
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----------------------------------------------------------------------CCCAGCTCGC
CGCGCTCCCCTCTTCTCCCTTCCCGGCGGTAAAAACGGAAACCCACGGGCCGCCGCAGCGGCATCGCGCTCCTCGGAGGA
TGGGCCCGCCGCCGCCCGACGTGGTGGTGATCAGCTCCGACGAGGGCGAAGGCTCCCCGAGGCGGTCTGTCTCGCCCGGC
TCCCTCGGGTGGGTCGCGTTGCTCGGGGACTCGCCGCCGCCGCTGCCAGCGCCGCGGAGGAAGAAGGGCAAGTCCCGCGG
CGTTCGCGCCAGAAAGGACAACGACGACGACGAC---GACGACGACTGCGTGATCCTGGACGGCGACCCTGACGGGCCGG
CTGTGGTCGAGGGCGCCAAGGGGAGGAGCGCGGGGGACGGCGCGTCAGACGAGGTGGAGATCGTCGCGGCCAAAGGCGAG
GTACAGATTGGTCTGCTCCCTTCCGTTTCGATCCACGCAATTTTTGTGCATTTCACTGAAGCAGTGCG-AACCTTGTTAC
GCTGCCTGGAGTCCGTGCATAGAGATGATCAAGCCACTGATTTCATCAGAAATTTCGTTCTGAATCGAGCCGTAGCTCAG
AGAGCATATGCTTTAATTTAA--------------------------------------------GTGTTGCACGTTCAC
TGCTTCAGAACGTACTTTTCCCGATAGACTTTCATTGTTCAGCCTGTAACATGGAAGTGGTCTGCTGAAGTATCTGTCCA
TGTTATCCATCCTTACTGTCGATGAGCATCTTCAGTTTTACTGCAGTTTGCCTGTGGACTGTGTTGGCATTCTAAATTTC
AGCTACTACA---TGGCATGCTTCTGCAGATAGCGTGCAAGGATTTCCCTCACCCGCGGCATTTATGTTCTGAATTGCCC
TTTAGCACCACTCCTCACCCAAAGCATTGTAAAATGGTAAGTCACAAGCATTGTCACCCCCTGTCCCTGATTCTGTTGGT
AATACGATTACAATAGCAGAGTTGACAACAGAGCTTTTGTAATGCGACCTCGTTGCTGTTCTTTTTTC---CAAATGCAG
TGCTACTGTTATGTGTGTGATGCTCCAGCTCCATGCAAGCAATGGGGCAAAGGGCTCTTGAATGGTGGTCATTGTCATGC
CACCGACAAGGAAACGAAGTGGAAAATACTGAGGCAAGCATTCAAGTGCAACTTTGAGCCGGGCGAGGAGGCCACTGTGT
CCGCTGGGAACCTACCCTATGGCTTTGACATCGAGCGCCTTCGCCAGCTCTTCAGGTACGCCCCAACTCTCACGTTCTCA
TAGGTGAGCCTTCTTAGTTCTCACAGGCGGCTGGATTGATC-GTTATACTCATCAATTGTTGAGCATGCAGTTGTAACTT
CTTGATAAACCCTGAAATAATGTAAATATGTTTCTTATCAAGACTGATTGCATTGCT-CCTCGCCTTATCTA---GGCTA
TTCATGCAGTGCGAGGTTCTGTTTCGTCGGTGTTC-TTTGTATGGGTTTTCTCTATGTTCTAAAACATAGTGTCTTACTT
CGCTGATGTGCAGATCATTTACGACAAGGGAACAGGCAAGAGTTGTGGACAGGGGAACTGGTTTTGACATCGATCGCCTT
GGCCAGCTCTTCAGGTACGCCCAAACTCTCACGT-----------------------TCTCA------------------
-----CAGGCGGCTGGATTGATCGTTATACTCATTAGTTGTTTAGCATGCAGTTGTAACTCCTTGATAAACCTTGAAATA
ATTTAAATATTTTTCTTATCAAGACTGGTTGCATTGCTTCCTCGCCTTATCTAGGCTATTCATGCAGTGCGCGGTTCTGT
TTC-GTCGGTGTTCTTTGTATGGATTCTCTCTATGTTCT-AAACACAGTGTCTACTTTGCTGATGTGCAGATCATTTACG
ACAAGGGAAGAGGCAAGAGCTGTGGACGGGGAAACTGGCTGAGTATGCTGTGCAGAATTTCCATCTGCGTGTGAGTATAT
TTCGTAAATGATAACTTGATAT--GAAAAAATGTCCTTAATTAAA-----------------------------------
--------------------------------------------------------------------------------
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--------------
>chr5B_1_TraesCS5B01G279500
AGATCTGGCGCCCCCATCACGACTAAGACGCCGAAGGAGGAAAGCATACCTGCTATCCATTAACCACAAATCCAGCGCAT
GTTCCATCTCCCATATGTCGTCGATGCAG---------TGCATTCGCTCCTGAACTACCTCCCAAGCTCCGCGCCGATGT
TGGAGCAAACGTCGTCGCAACGGCGGAGTCGGATGACAAT-GTGCACCACAAGGATGTCGCCGCTGCCACGACATCCCAA
CTTGAACAGACTGATTTTCAAATACATCATCTACCATAGAGACGACTGCCTCGCCAAAGAAGAATACAGAGCTTCTTTAT
TCAGCATCACCGTCGCCACTACCGAAGCCAAGACGTCGAACAATCCAAAAACCTAAACTACTAGGGGCCTAGAAC-TAAA
ACTAAAATGATCCGGCGG----------------CCCCCTCACCATCGACGACCAAGAGTCAC-CGGCGGAGGGGAGGCG
CCGGAAGGGTTGGCTCTCTTGGCTGCTGCGGCCAGGGTTGGCAGGTTGTAACTAATCAGATCCATCCTTTGACGAATCGT
ATATCGTGTGGAGGTTTGTTTTTAGATGTGTGCATCCTAAATGTCTTCAAACATCTTGTTGATGCAGAGGCTGGGGCTAA
CTAGTACTCCCTCCGTCCGGAAATACTTGTCATCAAAATGGATGAACATGGATGTATCTAGAACTAAAATACATCTAGAT
ACATCCATTTCAATGACAAGTATTTACGGACGGAGGAAGTATCCTCGTGATATTAATATATTCACCTTGTCAAAAAAAAG
CTCGCGTGGAGGTCTGCCCACGTGTAGGTATCCTGTGGCGTACCATTCGAAAATTCAAAATTTCGAGAACCAGAGCGGGC
GGTCGAAAGCAGCCGCCC--CCGAGCTGCCAAACTGGTGGGCCCCACATCGTCTGCGCAGTCAGCCATCGGATGCCGCGG
TCGCGCCGCCTCCCTCCTCCAATCGTTGGCCGGCCACTTTCCCCGCCTCGCCCAGCCCGTTCATCCGCTACCCAGCTCGC
CGCGCTCCCCTCTTCTCCCTTCCCGGCGGTAAAAACGGAAACCCACGGGCCGCCGCAGCGGCATCGCGCTCCTCGGAGGA
TGGGCCCGCCGCCGCCCGACGTGGTGGTGATCAGCTCCGACGAGGGCGAAGGCTCCCCGAGGCGGTCTGTCTCGCCCGGC
TCCCTCGGGTGGGTCGCGTTGCTCGGGGACTCGCCGCCGCCGCTGCCAGCGCCGCGGAGGAAGAAGGGCAAGTCCCGCGG
CGTTCGCGCCAGAAAGGACAACGACGACGACGAC---GACGACGACTGCGTGATCCTGGACGGCGACCCTGACGGGCCGG
CTGTGGTCGAGGGCGCCAAGGGGAGGAGCGCGGGGGACGGCGCGTCAGACGAGGTGGAGATCGTCGCGGCCAAAGGCGAG
GTACAGATTGGTCTGCTCCCTTCCGTTTCGATCCACGCAATTTTTGTGCATTTCACTGAAGCAGTGCG-AACCTTGTTAC
GCTGCCTGGAGTCCGTGCATAGAGATGATCAAGCCACTGATTTCATCAGAAATTTCGTTCTGAATCGAGCCGTAGCTCAG
AGAGCATATGCTTTAATTTAA--------------------------------------------GTGTTGCACGTTCAC
TGCTTCAGAACGTACTTTTCCCGATAGACTTTCATTGTTCAGCCTGTAACATGGAAGTGGTCTGCTGAAGTATCTGTCCA
TGTTATCCATCCTTACTGTCGATGAGCATCTTCAGTTTTACTGCAGTTTGCCTGTGGACTGTGTTGGCATTCTAAATTTC
AGCTACTACA---TGGCATGCTTCTGCAGATAGCGTGCAAGGATTTCCCTCACCCGCGGCATTTATGTTCTGAATTGCCC
TTTAGCACCACTCCTCACCCAAAGCATTGTAAAATGGTAAGTCACAAGCATTGTCACCCCCTGTCCCTGATTCTGTTGGT
AATACGATTACAATAGCAGAGTTGACAACAGAGCTTTTGTAATGCGACCTCGTTGCTGTTCTTTTTTC---CAAATGCAG
TGCTACTGTTATGTGTGTGATGCTCCAGCTCCATGCAAGCAATGGGGCAAAGGGCTCTTGAATGGTGGTCATTGTCATGC
CACCGACAAGGAAACGAAGTGGAAAATACTGAGGCAAGCATTCAAGTGCAACTTTGAGCCGGGCGAGGAGGCCACTGTGT
CCGCTGGGAACCTACCCTATGGCTTTGACATCGAGCGCCTTCGCCAGCTCTTCAGGTACGCCCCAACTCTCACGTTCTCA
TAGGTGAGCCTTCTTAGTTCTCACAGGCGGCTGGATTGATC-GTTATACTCATCAATTGTTGAGCATGCAGTTGTAACTT
CTTGATAAACCCTGAAATAATGTAAATATGTTTCTTATCAAGACTGATTGCATTGCT-CCTCGCCTTATCTA---GGCTA
TTCATGCAGTGCGAGGTTCTGTTTCGTCGGTGTTC-TTTGTATGGGTTTTCTCTATGTTCTAAAACATAGTGTCTTACTT
CGCTGATGTGCAGATCATTTACGACAAGGGAACAGGCAAGAGTTGTGGACAGGGGAACTGGTTTTGACATCGATCGCCTT
GGCCAGCTCTTCAGGTACGCCCAAACTCTCACGT-----------------------TCTCA------------------
-----CAGGCGGCTGGATTGATCGTTATACTCATTAGTTGTTTAGCATGCAGTTGTAACTCCTTGATAAACCTTGAAATA
ATTTAAATATTTTTCTTATCAAGACTGGTTGCATTGCTTCCTCGCCTTATCTAGGCTATTCATGCAGTGCGCGGTTCTGT
TTC-GTCGGTGTTCTTTGTATGGATTCTCTCTATGTTCT-AAACACAGTGTCTACTTTGCTGATGTGCAGATCATTTACG
ACAAGGGAAGAGGCAAGAGCTGTGGACGGGGAAACTGGCTGAGTATGCTGTGCAGAATTTCCATCTGCGTGTGAGTATAT
TTCGTAAATGATAACTTGATAT--GAAAAAATGTCCTTAATTAAATTTAGAAGGGACTTGTTCTCCTATGATCATGTCTT
AGCTGTGCAGCTCATGTGCTCATAGTTAAAGCACTATGGTTGGAATGTCA-----------TCCCCCAGTTTGCATTTGC
ATACCATTCACGTATATGTAA-------TATGTTCCTATGGTAATATGATGCGGTACTTGTTTCTGGTTTGCATACAAAG
TTAATCTTTTTCACGACTGTGCTCTTAGTTTCTGATTTAGGGAACACCTAAATCGGAACACAAGCCAACCTAATTGCTCT
CTTCGTCCTTCTAATTTGTTT--ACTATGGTGTTCCTTGACCTTTTAGCTGTTATTACTTCTTGAGGTCAGTATTATGTG
CAATTTGTGTACCTCGGTTTACCAAGATAATCGGCGCCACAGCTGTTCTGTCGGTTGCCAAGTATATGATGGCACACTTT
CATGTTTTG------------------------------------------------------AGTTTGAGGTTTGCAGG
CTTGGAAGGGACGCAACGCAAA-CTGCGAGTTTGAGTTGCAAGATAGGGATGAACACCGTGAGGGTTTTAGGTGTTGGGT
TTTGCAGGTTTCGCTAGGGAACATCATTAGTTTTCTTGCCATGGCT-TCTCTCTTTCTAATC-T---TACTGCCTCCG--
TAGCTGATAGTGTCAAAATTATTTTACAGATTTATCATGA---TTTT-TTTTCATAAATCCTATTCCCTCTGTCACAAAA
TAAGTGTCTCAACTTTGTACTAGCTATAGTACAAATTTGTACTAAGCTC--AAGACACTTATTTTGGGACGGAGGGAGTA
TAAGTTTTCATCAACAGCTGATGTCCAACAAAATAACCGTTAAGTTTGTCATGGAAACATCTCACGATCCTGTAAATGCT
TACCATCTTTAGAGATTATATTTCAGGCGTAAAACATCGTGTATTAGCAACGGAACTGAAGGAAAATTACATTTTGCATC
AATATTTGGTCTCAGGATCTCTAAACAAAAACTGAACATACACATCCAGACATGCAATCCTATTC-TTCTTCACTAGACG
ACTTGCTTTGTTGC
>chr7D_1
AGATCTGGCAT-CCCACCACGACTAAGATGCCGAAGGAGGAAATCATACCTGCCATCCATCAACCACTAACCCAGCACAC
ATTCCGTCTTCCAGATGTTGTTGATGCAGACCACAATCTGCATTCGCTCCTGAACTACCTCCCAAGCTCCACACCGACGC
TGGAGCAGACGTCATCGCAACGGCAGAGCCCGAGGACACAAGTCCACCACAAGG-TGTCGACACCACCACGACATCCCTG
CTTGAACAGACTGGTTCCCAAATCCATCACCGACCATAGAGGCAATTGCCTCGCCGGAGAAGAATCCGGAGCTTCTTTAT
TCAGCATCGTCGTCGCCGCTGCCGAAGCCAAGACGTCGAATGATCCAAAAACCTAAGCTATTAGGGCCATAGAACATAAA
GCTAAAATGATCCGCACGCGCGGGATCCGGCGACCCCCTTCACCACAGATGACCAAGAGGTCGTCGGCGGAGGGGAGCCG
CCGGAAGAGTTGGTTCTCTTGGCGCCGGCGGC------------------------------------------------
--------------------------------------------------------------------------------
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--------------
>chr5A_731
--------------------------------------------------------------------------------
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--------------------------------------GTATCCTCGCAATATTAATATATTCACCTTGTCAAAAAAAAG
-TCGTGTGAAGGTCTGTCCACGTGTATGCATCCTGTGGCGTACCATACGAAAATTCAAAATTTCGAGAACCAGAGCGGGC
GGGCGAAAGCAGCCGCCCTCCCGAGCTGCCAAA-GGGTGGGCCCCACATCGTC--CGCAGTCACACATCGGATACCGCGC
TCGCGCCGCCTTCCTCCTCCAATCGCTCGGCGGCCACTTTCCCCGCCTCGCCGAGCCTGTTCGTCCGCTTCCCAGCTCGC
CGCGCTCCCCTC----------CCGGCGCTCAAACCCGAAGCCCACGGGCTGCCGTGGCGGCATCGCGCTCCTCGGCGGA
TGGGCCCGCCGCCGCGCGACGTGGTGGTGATCAGCTCCGACGAGGACGAGGGCTCCCGGAGGTCGTCTGTCTCGCCCGGC
TCCCTCGGACGGGTCGCGTTGCTCGGGGAATCGCTGCCGCCGGTGCCAGTGCCGCGGAGGAAGAAGGGCAAGTCCCGCGG
CGTTCGCGCCAGAAAGGACAACGACGACGAGGAGGAGGACGACGACTGCGTGATCCTGGACGGCGACCCTGACGGGCCGG
CTGTGGTTGTGGGCGCCAAGGGGAGGGGCGCGGGGGACGGCGCGTCAGACGAGGTGGAGATCGTCGCGGTCAAAGGCAAG
GTACAGATTGGTTTGTTCCCTTCCGCTTTGATCCGCGCAATTTTTGCGCATTTCACTGAAGCAGTGCGAAACCTTGTTAC
GCTGCCTGGAGTCCGTGCCTAGAGATGAGCAGACCACTGATTTCATCAGAAATTTCGTTTCGAATCGAACTGTGGCTCAG
CGAGCATATGTTCTAATTTAAG----------------------------------------TATGTATTGCACGTTCAC
TGCTTCAGAACATACTTTTCCCGAAAGACTTTCATTGTTCAGCCTGTAACATGGAGGTGGTCTGCTGAAGTATCTGTCCC
TGTTATTCACCCTTACTGTCGATGAGCATCTTCAGTTTTACTGCATTTTGCCTGTGGACTGTGTTGGCATTCTAAATCGC
AGCTACTACAACATGCCATCCTTCTGCAGATAGCGTGCAAGGATTTCCCTCACCCGCGGCATTTATGTTCTGAATTGCCC
TTTAGCACCACTCCTCACCCAAAGCATTGTAAAATGGTAAGTCACAAGCATTGTCACCCCCTGTCCCTGATTCTGTTGGT
AATATGATTACAGTAGCAGAGTTGACAGCATAGCTTTTGTAATGCGGCCCCGTTGCTGTTCTTTTTCTTTTCAAATGCAG
TGCTACTGTTATGTGTGTGATGCTCCAGCTCCATGCAAGAGTTGGGGCAAAGGGCTCTTGAATGGTGATCATTGTCATGC
CACCGACAAGGACACAAAGTGGGAAACACTGAGGCAATCATTCAAGCGCAACTTTGAGCTGGGCAAGGAGGCCACTGTGT
CCGCTGGGAACCTACCCTATGGCTTTGACACCGAGCGCCTTCGCCAGCTCTTCAGGTATGCCCGAACTCTCACGTTCTCA
TAGGTGAGCCTTCTTAGTTCTCACAGGCGTTTGGATTGATC-GTTATACTCATCAATTGTTGAGCATGCAGTTGTAACTT
CTTGATAAACCCTGAAATAATTTAAATATGTTTCTTATCAAGACTGATTGCATTGCTTCCTGGCCTTATCTAGTAGGCTA
TTCATGCAGTGCGCGGTTCTGTTTCGTCGGTGTTCCTTTGTATGGGTTTTCTCTATGTGCTAAAACACAGTGTCTTACTT
TGCTGATGTGCAGATCATTTACGACAAGGGAACAGGCAAGAGTTGTGGACAGGGGAACTGGTTTTGACATCGATCGCCTT
GGCCAGCTCTTCAGGTACGCCCGAACTCTCACGT-----------------------TCTCATAGGTGAGCCTTCTTAGT
TCTAACAGGTGGCTGGATTGATCGTTATACTCATTAATTGTTGAGCATGCAGTTGTAACTTCTTGATAAACCCTGAAATA
ATTTAAATATGTTTGTTATCAAGACTGGTTGTATTGCTTCCTCGCCTTATCTAGGCTATTCATGCAGTGCGCAGTTCTGT
TTCA-TCGGTGCTCTTTGTATGGGTTTTCTCTATGCTCTAAAACA--GTGTCTACTTTGGTGATGTACAGATCATTTACG
ACAAGGGAACAGGCAAGAGTTGTGGACAGGGAAACTGGCTGAGTATGCTGTGCAGAATTTCCATCTGTGTGTGAGTATAT
TTCATAAATGATAACTTGATAT--GAC-AAATGTCCTTAATTAAGTTTAGAAGGGACTTGTTATCCTATGATCATGTCTT
AGCAGTGCAGCTAATGTGCTCATAGTTAAAGCACTATGGTTGCAGTATGGTTGGAATGTCTTCCCCCAGTTTGCATTTGC
ATACGTTTCATGTATATGTAACACGGAGTATGTTCCTTTGGTAATATGATGCAGTACTTGTTTCTGGTTTGCATGCAAAG
TTAATCTTTTTCATGACTGTGCTCTTAGTTTCTGATTTAGGGAACATCTAAATCTGAACACAAGCCAACCTAATTGCCCT
CGCCGTTCTTCTAATTTGTTTATACTAGGGTGTTCCTTGACCTTTTAGCTGTTATTACTTCTTGAGGTCAGTATCATGTG
CAATTTGTGCACCTCGGTTTACCGAGACAATCGGCGCCACAGCTGTTCTGTCAGTTGCCAAGTATATGATGGCACGCTTT
CTTGTAAATATTCTTCTCTCTTCTATAAAGCTAAGGTATGCCTTTGGCGTACTCTCGAAAAAAAGTTTGAGGTTTGCAGG
CTTGGAAGGGACGCAA-----A-CTGCGAGTTTGAGTTGGAAGATAGGAATGAACACGGTGAGGGTTTTAGGTGTTGGGT
TTTGCAGGTTTTGCTAGG-AACATCATTAGTTTTCTTGCCATGCTTCTCTCTCTTTCTAATGTT---TACTACCTCCG--
TAGCTGATAGTGTCATAATTATTTTACAGATTTATCATGA---TTTTATTTTCATAAATCCTACTCCCTCCGTCCCAAAA
TAAGTGTCTTA-------ACTAGCTTTAGTACGCACGTACTAAAGCTAGTTAAGACACTTATTTTGGGACGGAGGGAGTA
TAAGTTTTCATCAACATCTGATGTCCAACAAAATAGCCGTTAAGTTTGTCGTGGAAACATCTCACGATCCTGTAAATGCT
TACCATCTTTAGAGATTATATTTCAGGCATAAAACGTCGTGTACTAGGAACGGAACAGAAGG--------ATTTTGCATC
ACAATTTGGTCTCAGGATCACTAAACAAAAACTGAACATACACATCCAGACATGCAATCT--CCTATTCTTCACTAGACG
ACTTGCTTTGTTGC
>chr5D_774
--------------------------------------------------------------------------------
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-TCGTGTGGAGGTCTGTCCACGTGTACGTATCCTGTGGCGTACCCCCCGAAAATTCAAAATTTCGAGAACCGGAGCGGGC
GGGCGAAAGCAGCCGCCC--CCGAGCTGCCAAACGGGTGGGCCCCACATCGTCTGCGCAGTCACCCATCGGATGCCGCGG
TCGCGCCGCCTCCCTCCTCCAATCGCTGGCCGGCCACTTTCCCCGCCTCGCCCAGCCTGTTCGTCCGCTTCCCAGCTCGC
CGCGCTCCCCTC----------CCGGCGGTCAAACCCGAAGCCCACGGGCCGCCTTGCCGGCATCGCGCTCCTCGGCGGA
TGGGGCCGCCGCCGGGCGACGTGGTGGTGATCAGCTCCGACGAGGACGAGGGCTCCCCGAGGCGGTCTGTCTCGCCCGGC
TCCCTCGGATGGGTCGCGTTGCGCGGGGACTCGCCGCCGCCGGTGCCAGTGCCGCGGAGGAAGAAGGGCAAGTCCCGCGG
CGTTCGCGCCAGAAAGGACAACGACGACA---AC---GACGACGACTGCGTGATCCTGGACGGCGACCCTGACGGGCCGG
CTGTGGTTGCGTGCGCCAAGGGGAGGGGCGCGGGGGACGGCGCGTCAGACGAGGTGGAGATCGTCGCGGTCAAAGGCAAG
GTACAGATTGGTTTGCTCCCTTCCGCTTCGATCCACGCAATTTTTGCGCATTTCACTGAAGCAGTGCGAA-CCTTGTTAC
G----CTGGAGTCCGTGCCTAGAGATGAGCAGACCACTGATTTCGTCGGAAATTTCATTTCGAATCGAACCGTGGCTCAG
ACTCGGAATCACAACCTTGGCTCAGACTCAGAGAACATAGAGAAAACCCATACCAAGGAGTATAAGTATTGCACGTTCAC
TGCTTCAGAATATACTTT-CCCGAAAGACTTTCACTGTTCAACCTGTAACATGGAGGTGGTCTGCTGAAGTATCTGTCCA
TGTTATTCATCCTTACTGTCGATGAGCATCTTCAGTTTTACTGCAGTTTGCCTGTGGACTGTGTTGGCATTCTAAATCGC
AGCTACT---ACATGCCATCCTTCTGCAGATAGCGTGCAAGGATTTCCCTCACCCGCGGCATTTATGTTCTGAATTGCCC
TTTAGCACCACTCCTCACCCAAAGCATTGTAAAATGGTAAGTCACAGGCATTGTCACCCCCTGTCCCTGATTCTGTTGGT
AATATGATTACAGTAGCAGAGTTGACAGCATAGCTTTTGTAATGCGGCCCCGTTGCTGTTCTTTTTCTTTTCAAATGCAG
TGCTACTGTTATGTGTGTGATGCTCCAGCTCCATGCAAGCAATGGGGCAAAGGCCTCTTGAATGGTGGTCATTGTCATGC
CACCGACAAGGACACAAAGTGGGTAACACTGAGGCAATCATTCAAGCGCAACTTTGAGCCGGGCGAGGAGGCCACTGTGT
CCGCTGGGAACCTACCCTATGGCTTTGACACCGAGCGCCTTCGCCAGTTCTTCAGGTACTCCTGAACTCTCACGTTCTCA
TAGGTGAGCCTTCTTAGTTCTCACAGGTGGCTGGATTGATTGGTTATACGCATTACTTGTTGAGCATGCAGTTGTAACTT
CTTGATAAACCCTGAAATAATGTAAATATGTTTCTTATCAAGACTGATTGCATTGCTTCCTCGCCTTATCTAGGT---TA
TTCATGCAGTGCGTGGTTCTGTTTCGTCGGTGTTC-TTTGTATGGTTTTTCTCTATGTTCTAAAACACAGTGTCTTACTT
TGCTGATGTTCAGATCATTTACAACAAGGGAACAGGCAAGAGTTGTGGACAGGGGAACTGGTTTTGACATCGAGCGCCTT
GGCCAGCTCTTCAGGTACGCCCAAACTCTCACGTTCTCATAGGCGAACCTTCTTAGTTCTCA------------------
-----CAGGCGGCTGGATTGATCGTTATACTCATTAATTGTTGAGCATGCAGTTTTAAGTTCTTGTTAAACCCTGAAATA
ATTTAAATATGTTTCTTATCAAGACTGATTGTATTGCTTCCTCGCCTTATCTAGGCTATTCTTGCAGTGCGCGGTTCTGT
TTCCGTCGGTGTTCTTTGTATGGGTTTTCTCTATGTTCTAAAACACAGTGTCTACTTTGCTGATGTGCAGATCATTTACA
ACACGGGAACAGGCAAGAGTTGTGGACAGGGAAACTGGCTGAGTATGTTGTGCAGAATTTCCATCTGCGTGTGAGTATGT
TTCATAAATGATAACTTGATATATGAC-AAATGTCCTTAATTAAATTTAGAAGGGACTTGTTCTCCTATGATCATGTCTT
AGCTGTGCAGCTCATGTGCTCATAGTTAAAGCACTATGGTTGGAATGTCTG-----------CCCCCAGTTTGCATTTGC
ATACCTTTCATGTATATGTAA-------TATGTTCCTATGGTAATATGATGCGGTACATGTTTCTGGTTTGCATACAAAG
TTAATCTTTTTCACAACTGTGCTCTTAGTTTCTGATTTAGGGAACACCTAAATCTGAACACAAGCCAACCTAATTGCCCT
CTTCGTTCTTCTAATTTGTTT--ACTAGGGTGTTCCTTGACCTTTTAGCTGTTATTACTTCTTGAGGTCAGTATTATGTG
CAACTTGTGTACCTCGGTTTACCGAGATAATCGGCGCCACAGCTGTTCTGTCGGTTGCCAAGTATATGATGGCACACTTT
CATGTTTTG------------------------------------------------------AGTTTGAGGTTTGCAGG
CTTGGAAGGGACGCAA-----AACTGCGAGTTTGAGTCCCAAGATAGGAATGAACACTGAGAGGGTTTTAGGTGTTGGGT
TTTGCAGGTTTCGCTAGG-AACATCATTAGTTTTCTTGCCATGCTTCTCTCTCTTTCTAATGTTACTTACTACCTCCGTA
TAGCTGATAATGCCATAACTATTTTACAGACTTATCATGTTTCTTTT-TCTTCATAAATCC-------------------
------------------------------------------------------------------------------TA
TAAGTTTTCATCAACAGCTGATGTCCAACAAAATAACCATTTAGTTTGTCATGGAAGCATCTCATGATCCTGTAAATGCT
TACCATCTTTAGAGATTATATTTCAGGCGTAAAACGTCGTGTATTAGGAACGGAACGGAACGGAAGGAGTATTTTGCATC
ACAATTTGGTCTCAGGGTCTCTAAACAAAAACTTAACCTACACATCCAGACAGACATGCAACCCTATTCTTCACTAGACG
GCTTGCTTTGCTGC
>SNPs
---------SSS----S-----------S--------------S---------S------S------S--S-----S--S
S----S---S---S----S--S------------------------------------------------S-S----S-S
-------S-----S----------S---S-S--S----SS---S----------S-----S-S-SS------------SS
-------------S--SS-----S-----S-S---------S-S-S---------SS--------S-S------------
--------SS-------S--S-------------------SS--------------S---S-----S-S-----------
S-------------SSS---------------------S------SS--S---------SSSS--------------S--
-------S-----S---------SS-S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------SS-------------------------------
S---S-----------S---------S-------------------S---------------------------------
--S-------------------------------S----------------------------S----------------
-------------------------S-------------------------------S----S------S----------
------------SSSSSSSSSS--------S---S-S---S--------------SS-------------------S---
---------------S-----------------------------S---S------------------------------
--------S---------------------------------S------S------------------------------
------------------------------S-------------------------------------------------
-------S-S----------------S------------------------------------------S-------S--
------------S------------S--------------------S---------------------------------
------------------S---------S--SS--------------------------SS-------S----S------
----------S-S------------------------------------------------------S------------
-----------S------------S------------------------------S------------------------
------S----------------------------------------------------------------------SS-
---------------S---S------------------------------------------------------------
--------------------------------------------------------------------------------
----S-------S--------------S--S---------------S--S----------------SS------------
--------------------------------------------------------------------------------
------------S--S------S---S----------S--------S---------------------------------
------------------------------S--------------------------------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------S-----------------------------------------------------S------------
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S-----S-----------------S-----------S-------
----------S--------------------S------------------------------------------------
-----------------------S--S-----------------------------------------------------
---------S---------S-------S----------------------------------------------------
---S----------------------SS----------------------------------------------------
-------------------------------------------------S------------------------------
-----S----S---------------------------------------------------------------------
------------------------------------------------------S----------------------S--
------S--------------------S----------------------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
----------------SSSSS---------------------------S--------S----------------------
------------------S------------------------SS----------------S---------S--------
---------------S-----------------------------------------------S------S---S-----
---------S-SSSSSSS-------S------SS-SS-SSSSS-SSSSS-------------------------------
--------------------------------------------------------------------------------
-----------------------------------S-----------S--------S-----S--SSSSS----------
-SS--------------------------------------------------------SSSSSS---------------
--------------
>forward_664
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----TACTCCCTCCGTCCGGAAAT--------------------------------------------------------
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>reverse_1668
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-------------------------------------------------------------------GTTGCACGTTCAC
TGCTTCA-------------------------------------------------------------------------
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>forward_665
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-----ACTCCCTCCGTCCGGAAATA-------------------------------------------------------
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>reverse_2494
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-------------AGGTTCTGTTTCGTCGGTGT-----------------------------------------------
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>forward_667
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-------TCCCTCCGTCCGGAAATACT-----------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>reverse_2561
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CGCTGATGTGCAGATCATTTACG---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>forward_2494
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------AGGCTA
TTCATGCAGTGCGA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>reverse_3752
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GCCTCCGTA
GCTGATAGTGTC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
