Multiple sequence alignment - TraesCS5B01G279400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G279400 chr5B 100.000 3771 0 0 1 3771 465229759 465233529 0.000000e+00 6964.0
1 TraesCS5B01G279400 chr5D 91.228 969 48 10 2121 3067 386984442 386985395 0.000000e+00 1284.0
2 TraesCS5B01G279400 chr5D 93.774 530 25 4 1178 1704 386983417 386983941 0.000000e+00 789.0
3 TraesCS5B01G279400 chr5D 91.242 491 36 4 693 1179 386982903 386983390 0.000000e+00 662.0
4 TraesCS5B01G279400 chr5D 91.877 357 22 4 1767 2122 386984061 386984411 3.380000e-135 492.0
5 TraesCS5B01G279400 chr5A 90.445 921 50 14 2118 3014 489790975 489791881 0.000000e+00 1179.0
6 TraesCS5B01G279400 chr5A 88.301 718 52 14 3055 3771 489791892 489792578 0.000000e+00 832.0
7 TraesCS5B01G279400 chr5A 94.007 534 27 3 651 1179 489789494 489790027 0.000000e+00 804.0
8 TraesCS5B01G279400 chr5A 89.831 531 29 11 1178 1704 489790054 489790563 0.000000e+00 658.0
9 TraesCS5B01G279400 chr5A 91.136 361 24 5 1767 2126 489790595 489790948 2.040000e-132 483.0
10 TraesCS5B01G279400 chr3D 75.972 566 78 34 2192 2746 38278181 38278699 4.870000e-59 239.0
11 TraesCS5B01G279400 chr1A 75.410 488 93 26 3216 3689 559344884 559344410 1.060000e-50 211.0
12 TraesCS5B01G279400 chr7D 73.357 563 104 40 3212 3748 421107326 421107868 2.330000e-37 167.0
13 TraesCS5B01G279400 chr2A 75.394 317 61 15 3211 3519 701401343 701401036 1.830000e-28 137.0
14 TraesCS5B01G279400 chr2B 73.651 315 68 13 3211 3519 588559466 588559771 1.430000e-19 108.0
15 TraesCS5B01G279400 chr7B 100.000 28 0 0 432 459 695902027 695902054 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G279400 chr5B 465229759 465233529 3770 False 6964.00 6964 100.00000 1 3771 1 chr5B.!!$F1 3770
1 TraesCS5B01G279400 chr5D 386982903 386985395 2492 False 806.75 1284 92.03025 693 3067 4 chr5D.!!$F1 2374
2 TraesCS5B01G279400 chr5A 489789494 489792578 3084 False 791.20 1179 90.74400 651 3771 5 chr5A.!!$F1 3120
3 TraesCS5B01G279400 chr3D 38278181 38278699 518 False 239.00 239 75.97200 2192 2746 1 chr3D.!!$F1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
822 829 0.250640 GGCTCGATGATGCCCAGAAT 60.251 55.0 2.02 0.0 43.11 2.40 F
1139 1147 0.109039 AAAACACACAACACACCGCC 60.109 50.0 0.00 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2400 2539 0.322322 AACGCCGTGGACATAAAGGA 59.678 50.0 0.00 0.0 0.0 3.36 R
3032 3207 0.245539 CGGACGTGCTTTTCCCTCTA 59.754 55.0 5.27 0.0 0.0 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 7.581011 AAGATACAAATTGTGGAATTTTCGC 57.419 32.000 9.15 0.00 39.34 4.70
39 40 5.799936 AGATACAAATTGTGGAATTTTCGCG 59.200 36.000 9.15 0.00 39.34 5.87
40 41 3.971150 ACAAATTGTGGAATTTTCGCGA 58.029 36.364 3.71 3.71 39.34 5.87
41 42 4.363999 ACAAATTGTGGAATTTTCGCGAA 58.636 34.783 19.38 19.38 39.34 4.70
42 43 4.987912 ACAAATTGTGGAATTTTCGCGAAT 59.012 33.333 24.05 7.93 39.34 3.34
43 44 5.465056 ACAAATTGTGGAATTTTCGCGAATT 59.535 32.000 24.05 15.20 39.34 2.17
44 45 5.761818 AATTGTGGAATTTTCGCGAATTC 57.238 34.783 24.05 22.46 42.54 2.17
45 46 3.906014 TGTGGAATTTTCGCGAATTCA 57.094 38.095 27.29 15.54 44.19 2.57
46 47 4.230314 TGTGGAATTTTCGCGAATTCAA 57.770 36.364 27.29 18.81 44.19 2.69
47 48 4.804108 TGTGGAATTTTCGCGAATTCAAT 58.196 34.783 27.29 19.90 44.19 2.57
48 49 5.226396 TGTGGAATTTTCGCGAATTCAATT 58.774 33.333 27.29 25.25 44.19 2.32
49 50 6.382608 TGTGGAATTTTCGCGAATTCAATTA 58.617 32.000 27.29 13.68 44.19 1.40
50 51 7.032580 TGTGGAATTTTCGCGAATTCAATTAT 58.967 30.769 27.29 11.46 44.19 1.28
51 52 7.543868 TGTGGAATTTTCGCGAATTCAATTATT 59.456 29.630 27.29 16.47 44.19 1.40
52 53 8.379902 GTGGAATTTTCGCGAATTCAATTATTT 58.620 29.630 27.29 13.42 44.19 1.40
53 54 8.379161 TGGAATTTTCGCGAATTCAATTATTTG 58.621 29.630 27.29 0.00 44.19 2.32
54 55 7.370576 GGAATTTTCGCGAATTCAATTATTTGC 59.629 33.333 27.29 16.01 44.19 3.68
55 56 6.696825 TTTTCGCGAATTCAATTATTTGCA 57.303 29.167 24.05 0.00 42.54 4.08
56 57 6.884096 TTTCGCGAATTCAATTATTTGCAT 57.116 29.167 24.05 0.00 42.54 3.96
57 58 5.869853 TCGCGAATTCAATTATTTGCATG 57.130 34.783 6.20 0.00 42.54 4.06
58 59 5.576895 TCGCGAATTCAATTATTTGCATGA 58.423 33.333 6.20 2.10 42.54 3.07
59 60 6.207928 TCGCGAATTCAATTATTTGCATGAT 58.792 32.000 6.20 0.00 42.54 2.45
60 61 6.696583 TCGCGAATTCAATTATTTGCATGATT 59.303 30.769 6.20 0.00 42.54 2.57
61 62 7.222417 TCGCGAATTCAATTATTTGCATGATTT 59.778 29.630 6.20 0.00 42.54 2.17
62 63 7.524861 CGCGAATTCAATTATTTGCATGATTTC 59.475 33.333 0.00 9.01 42.54 2.17
63 64 8.329583 GCGAATTCAATTATTTGCATGATTTCA 58.670 29.630 6.22 0.00 42.17 2.69
74 75 8.789881 ATTTGCATGATTTCAACAAATGTTTG 57.210 26.923 17.29 4.04 41.23 2.93
75 76 6.301687 TGCATGATTTCAACAAATGTTTGG 57.698 33.333 9.98 0.00 42.34 3.28
76 77 5.238868 TGCATGATTTCAACAAATGTTTGGG 59.761 36.000 9.98 2.56 42.34 4.12
77 78 5.469421 GCATGATTTCAACAAATGTTTGGGA 59.531 36.000 9.98 4.66 42.34 4.37
78 79 6.017275 GCATGATTTCAACAAATGTTTGGGAA 60.017 34.615 9.98 9.63 42.34 3.97
79 80 7.468357 GCATGATTTCAACAAATGTTTGGGAAA 60.468 33.333 19.92 19.92 43.21 3.13
80 81 8.569641 CATGATTTCAACAAATGTTTGGGAAAT 58.430 29.630 24.34 24.34 46.59 2.17
81 82 7.928103 TGATTTCAACAAATGTTTGGGAAATG 58.072 30.769 26.67 13.34 45.46 2.32
82 83 7.772292 TGATTTCAACAAATGTTTGGGAAATGA 59.228 29.630 26.67 21.28 45.46 2.57
83 84 8.694581 ATTTCAACAAATGTTTGGGAAATGAT 57.305 26.923 23.92 12.21 44.74 2.45
84 85 9.790344 ATTTCAACAAATGTTTGGGAAATGATA 57.210 25.926 23.92 11.97 44.74 2.15
85 86 9.618890 TTTCAACAAATGTTTGGGAAATGATAA 57.381 25.926 16.56 2.88 42.34 1.75
86 87 9.618890 TTCAACAAATGTTTGGGAAATGATAAA 57.381 25.926 9.98 0.00 42.34 1.40
87 88 9.790344 TCAACAAATGTTTGGGAAATGATAAAT 57.210 25.926 9.98 0.00 42.34 1.40
132 133 9.090692 CTGTTCATTGAATTCAAAAACAGTTCT 57.909 29.630 36.80 18.62 45.81 3.01
133 134 9.434420 TGTTCATTGAATTCAAAAACAGTTCTT 57.566 25.926 29.81 11.25 38.98 2.52
134 135 9.693157 GTTCATTGAATTCAAAAACAGTTCTTG 57.307 29.630 27.88 18.21 39.55 3.02
135 136 9.650539 TTCATTGAATTCAAAAACAGTTCTTGA 57.349 25.926 23.91 15.37 39.55 3.02
136 137 9.650539 TCATTGAATTCAAAAACAGTTCTTGAA 57.349 25.926 23.91 15.58 41.79 2.69
151 152 9.450807 ACAGTTCTTGAATTCTAAAAATGTTCG 57.549 29.630 7.05 0.00 0.00 3.95
152 153 9.663904 CAGTTCTTGAATTCTAAAAATGTTCGA 57.336 29.630 7.05 0.00 0.00 3.71
153 154 9.884465 AGTTCTTGAATTCTAAAAATGTTCGAG 57.116 29.630 7.05 0.00 33.55 4.04
154 155 9.878599 GTTCTTGAATTCTAAAAATGTTCGAGA 57.121 29.630 7.05 0.00 37.48 4.04
168 169 9.748708 AAAATGTTCGAGATTTGAAAAGAATGA 57.251 25.926 5.52 0.00 0.00 2.57
169 170 8.733857 AATGTTCGAGATTTGAAAAGAATGAC 57.266 30.769 0.00 0.00 0.00 3.06
170 171 6.668323 TGTTCGAGATTTGAAAAGAATGACC 58.332 36.000 0.00 0.00 0.00 4.02
171 172 6.262049 TGTTCGAGATTTGAAAAGAATGACCA 59.738 34.615 0.00 0.00 0.00 4.02
172 173 7.040478 TGTTCGAGATTTGAAAAGAATGACCAT 60.040 33.333 0.00 0.00 0.00 3.55
173 174 7.452880 TCGAGATTTGAAAAGAATGACCATT 57.547 32.000 0.00 0.00 0.00 3.16
174 175 7.885297 TCGAGATTTGAAAAGAATGACCATTT 58.115 30.769 0.00 0.00 0.00 2.32
175 176 8.359642 TCGAGATTTGAAAAGAATGACCATTTT 58.640 29.630 0.00 0.00 0.00 1.82
176 177 8.981647 CGAGATTTGAAAAGAATGACCATTTTT 58.018 29.630 0.00 0.00 0.00 1.94
392 393 9.547753 TTTTAAATTCGATGGACAATTTTTGGA 57.452 25.926 0.00 0.00 34.68 3.53
393 394 9.717942 TTTAAATTCGATGGACAATTTTTGGAT 57.282 25.926 0.00 0.00 34.68 3.41
394 395 9.717942 TTAAATTCGATGGACAATTTTTGGATT 57.282 25.926 0.00 0.00 34.68 3.01
395 396 8.620116 AAATTCGATGGACAATTTTTGGATTT 57.380 26.923 0.00 0.00 29.63 2.17
396 397 8.620116 AATTCGATGGACAATTTTTGGATTTT 57.380 26.923 0.00 0.00 34.12 1.82
397 398 7.418840 TTCGATGGACAATTTTTGGATTTTG 57.581 32.000 0.00 0.00 34.12 2.44
398 399 6.753180 TCGATGGACAATTTTTGGATTTTGA 58.247 32.000 0.00 0.00 34.12 2.69
399 400 7.385267 TCGATGGACAATTTTTGGATTTTGAT 58.615 30.769 0.00 0.00 34.12 2.57
400 401 7.331440 TCGATGGACAATTTTTGGATTTTGATG 59.669 33.333 0.00 0.00 34.12 3.07
401 402 7.331440 CGATGGACAATTTTTGGATTTTGATGA 59.669 33.333 0.00 0.00 34.12 2.92
402 403 8.921353 ATGGACAATTTTTGGATTTTGATGAA 57.079 26.923 0.00 0.00 34.12 2.57
403 404 8.921353 TGGACAATTTTTGGATTTTGATGAAT 57.079 26.923 0.00 0.00 34.12 2.57
445 446 9.179552 TGAACAAAATACTGAATTTGATGAACG 57.820 29.630 5.35 0.00 37.85 3.95
446 447 9.180678 GAACAAAATACTGAATTTGATGAACGT 57.819 29.630 5.35 0.00 37.85 3.99
447 448 9.528018 AACAAAATACTGAATTTGATGAACGTT 57.472 25.926 0.00 0.00 37.85 3.99
448 449 9.528018 ACAAAATACTGAATTTGATGAACGTTT 57.472 25.926 0.46 0.00 37.85 3.60
482 483 9.575783 TTGTTTAACTTTTCTACATTGGTGAAC 57.424 29.630 0.00 0.00 0.00 3.18
483 484 8.740906 TGTTTAACTTTTCTACATTGGTGAACA 58.259 29.630 0.00 0.00 0.00 3.18
484 485 9.744468 GTTTAACTTTTCTACATTGGTGAACAT 57.256 29.630 0.00 0.00 0.00 2.71
488 489 9.665719 AACTTTTCTACATTGGTGAACATTTTT 57.334 25.926 0.00 0.00 0.00 1.94
489 490 9.097257 ACTTTTCTACATTGGTGAACATTTTTG 57.903 29.630 0.00 0.00 0.00 2.44
490 491 9.311916 CTTTTCTACATTGGTGAACATTTTTGA 57.688 29.630 0.00 0.00 0.00 2.69
491 492 9.658799 TTTTCTACATTGGTGAACATTTTTGAA 57.341 25.926 0.00 0.00 0.00 2.69
492 493 9.658799 TTTCTACATTGGTGAACATTTTTGAAA 57.341 25.926 0.00 0.00 0.00 2.69
493 494 9.829507 TTCTACATTGGTGAACATTTTTGAAAT 57.170 25.926 0.00 0.00 0.00 2.17
494 495 9.474920 TCTACATTGGTGAACATTTTTGAAATC 57.525 29.630 0.00 0.00 0.00 2.17
495 496 7.176285 ACATTGGTGAACATTTTTGAAATCG 57.824 32.000 0.00 0.00 0.00 3.34
496 497 6.983307 ACATTGGTGAACATTTTTGAAATCGA 59.017 30.769 0.00 0.00 0.00 3.59
497 498 7.656948 ACATTGGTGAACATTTTTGAAATCGAT 59.343 29.630 0.00 0.00 0.00 3.59
498 499 7.405469 TTGGTGAACATTTTTGAAATCGATG 57.595 32.000 0.00 0.00 0.00 3.84
499 500 5.925397 TGGTGAACATTTTTGAAATCGATGG 59.075 36.000 0.00 0.00 0.00 3.51
500 501 5.348451 GGTGAACATTTTTGAAATCGATGGG 59.652 40.000 0.00 0.00 0.00 4.00
501 502 6.155827 GTGAACATTTTTGAAATCGATGGGA 58.844 36.000 0.00 0.00 0.00 4.37
502 503 6.644592 GTGAACATTTTTGAAATCGATGGGAA 59.355 34.615 0.00 0.00 0.00 3.97
503 504 7.170658 GTGAACATTTTTGAAATCGATGGGAAA 59.829 33.333 0.00 0.00 0.00 3.13
504 505 7.712639 TGAACATTTTTGAAATCGATGGGAAAA 59.287 29.630 0.00 5.31 0.00 2.29
505 506 8.443953 AACATTTTTGAAATCGATGGGAAAAA 57.556 26.923 17.12 17.12 0.00 1.94
506 507 8.620116 ACATTTTTGAAATCGATGGGAAAAAT 57.380 26.923 19.00 19.00 34.78 1.82
507 508 8.505625 ACATTTTTGAAATCGATGGGAAAAATG 58.494 29.630 31.39 31.39 46.46 2.32
508 509 8.505625 CATTTTTGAAATCGATGGGAAAAATGT 58.494 29.630 28.68 14.60 41.48 2.71
509 510 7.650834 TTTTGAAATCGATGGGAAAAATGTC 57.349 32.000 0.00 0.00 0.00 3.06
510 511 5.323371 TGAAATCGATGGGAAAAATGTCC 57.677 39.130 0.00 0.00 36.90 4.02
511 512 4.769488 TGAAATCGATGGGAAAAATGTCCA 59.231 37.500 0.00 0.00 39.70 4.02
512 513 4.718940 AATCGATGGGAAAAATGTCCAC 57.281 40.909 0.00 0.00 39.70 4.02
513 514 3.147553 TCGATGGGAAAAATGTCCACA 57.852 42.857 0.00 0.00 39.70 4.17
514 515 3.491342 TCGATGGGAAAAATGTCCACAA 58.509 40.909 0.00 0.00 39.70 3.33
515 516 3.891977 TCGATGGGAAAAATGTCCACAAA 59.108 39.130 0.00 0.00 39.70 2.83
516 517 4.526262 TCGATGGGAAAAATGTCCACAAAT 59.474 37.500 0.00 0.00 39.70 2.32
517 518 5.011533 TCGATGGGAAAAATGTCCACAAATT 59.988 36.000 0.00 0.00 39.70 1.82
518 519 5.700373 CGATGGGAAAAATGTCCACAAATTT 59.300 36.000 0.00 0.00 39.70 1.82
519 520 6.347563 CGATGGGAAAAATGTCCACAAATTTG 60.348 38.462 16.67 16.67 39.70 2.32
520 521 5.994250 TGGGAAAAATGTCCACAAATTTGA 58.006 33.333 24.64 1.90 39.70 2.69
521 522 6.418101 TGGGAAAAATGTCCACAAATTTGAA 58.582 32.000 24.64 6.86 39.70 2.69
522 523 6.886459 TGGGAAAAATGTCCACAAATTTGAAA 59.114 30.769 24.64 6.51 39.70 2.69
523 524 7.394359 TGGGAAAAATGTCCACAAATTTGAAAA 59.606 29.630 24.64 6.16 39.70 2.29
524 525 7.914871 GGGAAAAATGTCCACAAATTTGAAAAG 59.085 33.333 24.64 10.63 39.70 2.27
525 526 7.914871 GGAAAAATGTCCACAAATTTGAAAAGG 59.085 33.333 24.64 18.03 37.65 3.11
526 527 8.572855 AAAAATGTCCACAAATTTGAAAAGGA 57.427 26.923 24.64 19.74 0.00 3.36
527 528 8.572855 AAAATGTCCACAAATTTGAAAAGGAA 57.427 26.923 24.64 14.34 0.00 3.36
528 529 8.572855 AAATGTCCACAAATTTGAAAAGGAAA 57.427 26.923 24.64 18.37 0.00 3.13
529 530 8.750515 AATGTCCACAAATTTGAAAAGGAAAT 57.249 26.923 24.64 19.52 0.00 2.17
530 531 8.750515 ATGTCCACAAATTTGAAAAGGAAATT 57.249 26.923 24.64 10.31 35.06 1.82
531 532 8.207521 TGTCCACAAATTTGAAAAGGAAATTC 57.792 30.769 24.64 12.66 32.94 2.17
532 533 7.010923 TGTCCACAAATTTGAAAAGGAAATTCG 59.989 33.333 24.64 0.00 32.94 3.34
533 534 6.018343 TCCACAAATTTGAAAAGGAAATTCGC 60.018 34.615 24.64 0.00 32.94 4.70
534 535 6.238320 CCACAAATTTGAAAAGGAAATTCGCA 60.238 34.615 24.64 0.00 32.94 5.10
535 536 7.185453 CACAAATTTGAAAAGGAAATTCGCAA 58.815 30.769 24.64 0.00 32.94 4.85
536 537 7.695618 CACAAATTTGAAAAGGAAATTCGCAAA 59.304 29.630 24.64 0.00 32.94 3.68
537 538 8.239998 ACAAATTTGAAAAGGAAATTCGCAAAA 58.760 25.926 24.64 0.00 32.94 2.44
538 539 9.070149 CAAATTTGAAAAGGAAATTCGCAAAAA 57.930 25.926 13.08 0.00 32.94 1.94
539 540 9.800433 AAATTTGAAAAGGAAATTCGCAAAAAT 57.200 22.222 0.00 0.00 32.94 1.82
542 543 9.875675 TTTGAAAAGGAAATTCGCAAAAATATG 57.124 25.926 0.00 0.00 0.00 1.78
543 544 7.517321 TGAAAAGGAAATTCGCAAAAATATGC 58.483 30.769 0.00 0.00 42.94 3.14
544 545 7.172190 TGAAAAGGAAATTCGCAAAAATATGCA 59.828 29.630 0.00 0.00 46.76 3.96
545 546 7.432350 AAAGGAAATTCGCAAAAATATGCAA 57.568 28.000 0.00 0.00 46.76 4.08
546 547 7.432350 AAGGAAATTCGCAAAAATATGCAAA 57.568 28.000 0.00 0.00 46.76 3.68
547 548 7.432350 AGGAAATTCGCAAAAATATGCAAAA 57.568 28.000 0.00 0.00 46.76 2.44
548 549 8.042944 AGGAAATTCGCAAAAATATGCAAAAT 57.957 26.923 0.00 0.00 46.76 1.82
549 550 8.513774 AGGAAATTCGCAAAAATATGCAAAATT 58.486 25.926 0.00 0.00 46.76 1.82
550 551 9.766277 GGAAATTCGCAAAAATATGCAAAATTA 57.234 25.926 0.00 0.00 46.76 1.40
584 585 9.653287 AAAAGAGAAAAGGAAAAGTAAAACAGG 57.347 29.630 0.00 0.00 0.00 4.00
585 586 8.589701 AAGAGAAAAGGAAAAGTAAAACAGGA 57.410 30.769 0.00 0.00 0.00 3.86
586 587 8.589701 AGAGAAAAGGAAAAGTAAAACAGGAA 57.410 30.769 0.00 0.00 0.00 3.36
587 588 9.031537 AGAGAAAAGGAAAAGTAAAACAGGAAA 57.968 29.630 0.00 0.00 0.00 3.13
588 589 9.647797 GAGAAAAGGAAAAGTAAAACAGGAAAA 57.352 29.630 0.00 0.00 0.00 2.29
631 632 2.542020 AAAAACCGGAAATTGGGCTG 57.458 45.000 9.46 0.00 0.00 4.85
632 633 0.684535 AAAACCGGAAATTGGGCTGG 59.315 50.000 9.46 0.00 36.60 4.85
633 634 1.826340 AAACCGGAAATTGGGCTGGC 61.826 55.000 9.46 0.00 33.74 4.85
634 635 3.460868 CCGGAAATTGGGCTGGCC 61.461 66.667 14.23 14.23 0.00 5.36
644 645 2.895372 GGCTGGCCCATACGAACG 60.895 66.667 0.00 0.00 0.00 3.95
645 646 2.895372 GCTGGCCCATACGAACGG 60.895 66.667 0.00 0.00 0.00 4.44
646 647 2.895372 CTGGCCCATACGAACGGC 60.895 66.667 0.00 0.00 42.23 5.68
649 650 2.895372 GCCCATACGAACGGCCAG 60.895 66.667 2.24 0.00 36.63 4.85
664 665 1.219124 CCAGCGCGCCATATAGGAT 59.781 57.895 30.33 1.73 41.22 3.24
666 667 0.807667 CAGCGCGCCATATAGGATCC 60.808 60.000 30.33 2.48 41.22 3.36
711 716 9.872757 AACAACGAAATGTATAAACTAACACTG 57.127 29.630 0.00 0.00 32.02 3.66
756 763 5.362717 TGGACTAAGAAGGATTAGCGAATCA 59.637 40.000 19.41 0.00 42.95 2.57
822 829 0.250640 GGCTCGATGATGCCCAGAAT 60.251 55.000 2.02 0.00 43.11 2.40
830 837 0.873054 GATGCCCAGAATGATGCTCG 59.127 55.000 0.00 0.00 39.69 5.03
837 844 1.851053 CAGAATGATGCTCGTCGACTG 59.149 52.381 14.70 7.51 39.69 3.51
868 875 3.070878 TCTTGGGGGCTCAAATTTTGTTC 59.929 43.478 8.89 2.72 0.00 3.18
875 882 5.359756 GGGCTCAAATTTTGTTCTTGTCTT 58.640 37.500 8.89 0.00 0.00 3.01
918 925 2.851263 TTGACCTGTTCCACGCTTAT 57.149 45.000 0.00 0.00 0.00 1.73
1009 1016 4.099633 TGAGAAACATCAGATGGGTCTCT 58.900 43.478 28.66 18.83 41.29 3.10
1023 1030 1.203523 GGTCTCTTGTCGCTCATCACT 59.796 52.381 0.00 0.00 0.00 3.41
1108 1115 1.070786 GCCTCAAACCTCACCGTCA 59.929 57.895 0.00 0.00 0.00 4.35
1139 1147 0.109039 AAAACACACAACACACCGCC 60.109 50.000 0.00 0.00 0.00 6.13
1205 1241 5.009911 TCTGTCACAATCAATCCCTTTTGTG 59.990 40.000 8.03 8.03 46.43 3.33
1219 1255 1.686355 TTTGTGGCATGTTCGAAGGT 58.314 45.000 0.00 0.00 0.00 3.50
1245 1281 1.349026 TCAGGGCAAGGAAACTCTGAG 59.651 52.381 2.45 2.45 42.68 3.35
1255 1295 3.385111 AGGAAACTCTGAGACTCGTGTTT 59.615 43.478 12.44 18.48 32.90 2.83
1256 1296 4.120589 GGAAACTCTGAGACTCGTGTTTT 58.879 43.478 12.44 9.05 0.00 2.43
1257 1297 4.025647 GGAAACTCTGAGACTCGTGTTTTG 60.026 45.833 12.44 3.12 0.00 2.44
1258 1298 3.802948 ACTCTGAGACTCGTGTTTTGT 57.197 42.857 12.44 0.00 0.00 2.83
1264 1304 5.234329 TCTGAGACTCGTGTTTTGTTCATTC 59.766 40.000 0.00 0.00 0.00 2.67
1309 1349 0.959372 TGGAGACGTCGAGGGTCTTC 60.959 60.000 17.42 16.20 44.41 2.87
1510 1550 5.705441 TCTCAACATCTTGATGTAACCAACC 59.295 40.000 15.50 0.00 35.78 3.77
1511 1551 5.630121 TCAACATCTTGATGTAACCAACCT 58.370 37.500 15.50 0.00 33.81 3.50
1512 1552 5.473162 TCAACATCTTGATGTAACCAACCTG 59.527 40.000 15.50 8.54 33.81 4.00
1521 1564 0.111639 TAACCAACCTGCAACCCCTC 59.888 55.000 0.00 0.00 0.00 4.30
1585 1628 2.290514 TGCTGCTCTGAATAACCAAGCT 60.291 45.455 0.00 0.00 34.11 3.74
1646 1689 1.676967 GTTCTGCCCCTTCCAGCTG 60.677 63.158 6.78 6.78 0.00 4.24
1704 1747 9.261035 CCAATCACCTAGGTATATATTGTCTCT 57.739 37.037 15.80 0.00 0.00 3.10
1706 1749 9.830186 AATCACCTAGGTATATATTGTCTCTGT 57.170 33.333 15.80 0.00 0.00 3.41
1707 1750 9.830186 ATCACCTAGGTATATATTGTCTCTGTT 57.170 33.333 15.80 0.00 0.00 3.16
1737 1780 8.713708 ATAGCAGTAGTAGTCAATACCTCAAT 57.286 34.615 0.00 0.00 34.67 2.57
1738 1781 9.809395 ATAGCAGTAGTAGTCAATACCTCAATA 57.191 33.333 0.00 0.00 34.67 1.90
1739 1782 8.713708 AGCAGTAGTAGTCAATACCTCAATAT 57.286 34.615 0.00 0.00 34.67 1.28
1740 1783 9.148879 AGCAGTAGTAGTCAATACCTCAATATT 57.851 33.333 0.00 0.00 34.67 1.28
1755 1798 8.140112 ACCTCAATATTTAGAGAACTGACAGT 57.860 34.615 1.07 1.07 33.74 3.55
1785 1885 8.942338 GTATCCTGATACTAACATTTGTGTCA 57.058 34.615 9.53 5.76 40.28 3.58
1786 1886 9.547753 GTATCCTGATACTAACATTTGTGTCAT 57.452 33.333 9.53 0.00 40.28 3.06
1966 2067 6.664515 TCAATGACAAGAAAACGTATGGTTC 58.335 36.000 0.00 0.00 38.08 3.62
1970 2071 6.289834 TGACAAGAAAACGTATGGTTCCTTA 58.710 36.000 0.00 0.00 38.08 2.69
1973 2074 6.938030 ACAAGAAAACGTATGGTTCCTTATGA 59.062 34.615 9.83 0.00 38.08 2.15
1983 2084 7.041780 CGTATGGTTCCTTATGATTCTTTGGAG 60.042 40.741 0.00 0.00 0.00 3.86
1991 2092 7.059156 CCTTATGATTCTTTGGAGTTGGAGAT 58.941 38.462 0.00 0.00 0.00 2.75
1992 2093 7.228308 CCTTATGATTCTTTGGAGTTGGAGATC 59.772 40.741 0.00 0.00 0.00 2.75
1993 2094 5.768980 TGATTCTTTGGAGTTGGAGATCT 57.231 39.130 0.00 0.00 0.00 2.75
1994 2095 6.874278 TGATTCTTTGGAGTTGGAGATCTA 57.126 37.500 0.00 0.00 0.00 1.98
1995 2096 7.443302 TGATTCTTTGGAGTTGGAGATCTAT 57.557 36.000 0.00 0.00 0.00 1.98
1996 2097 7.865820 TGATTCTTTGGAGTTGGAGATCTATT 58.134 34.615 0.00 0.00 0.00 1.73
1997 2098 7.772292 TGATTCTTTGGAGTTGGAGATCTATTG 59.228 37.037 0.00 0.00 0.00 1.90
1998 2099 6.627087 TCTTTGGAGTTGGAGATCTATTGT 57.373 37.500 0.00 0.00 0.00 2.71
1999 2100 6.644347 TCTTTGGAGTTGGAGATCTATTGTC 58.356 40.000 0.00 0.00 0.00 3.18
2000 2101 4.655762 TGGAGTTGGAGATCTATTGTCG 57.344 45.455 0.00 0.00 0.00 4.35
2001 2102 3.384789 TGGAGTTGGAGATCTATTGTCGG 59.615 47.826 0.00 0.00 0.00 4.79
2074 2175 2.657297 TGGACAATCCAAGCTTGCC 58.343 52.632 21.43 15.31 45.00 4.52
2107 2208 2.994849 GCTAAAGAGCTCTCTAGACGC 58.005 52.381 25.26 14.39 45.98 5.19
2163 2300 6.994221 TGCTAAATAGAGGGCTCATACTAAC 58.006 40.000 0.00 0.00 0.00 2.34
2211 2348 7.849804 AACTATTCTGACGCATCATAAACTT 57.150 32.000 0.00 0.00 33.22 2.66
2316 2455 4.262377 GCACTCCTATGCTGTCATGAGTAT 60.262 45.833 0.00 0.00 42.62 2.12
2328 2467 1.056700 ATGAGTATGCTCCCCGGCTT 61.057 55.000 8.45 0.00 40.95 4.35
2365 2504 7.802720 TCTTGTGAATGTATTTGTCAAATGTCG 59.197 33.333 19.10 2.08 32.38 4.35
2394 2533 5.163622 GCTTTAGCTATGCACCATTTTCTGA 60.164 40.000 12.56 0.00 38.21 3.27
2400 2539 4.942761 ATGCACCATTTTCTGACAAGTT 57.057 36.364 0.00 0.00 0.00 2.66
2422 2563 2.940410 CCTTTATGTCCACGGCGTTATT 59.060 45.455 11.19 0.00 0.00 1.40
2589 2736 0.532115 GGATGCCTTGCGGTTTCATT 59.468 50.000 0.00 0.00 0.00 2.57
2590 2737 1.066929 GGATGCCTTGCGGTTTCATTT 60.067 47.619 0.00 0.00 0.00 2.32
2814 2964 1.128200 AGGAACCTACCGCATGCATA 58.872 50.000 19.57 8.48 34.73 3.14
2820 2970 2.138320 CCTACCGCATGCATAGTGAAG 58.862 52.381 19.57 6.87 0.00 3.02
2834 2997 6.580791 TGCATAGTGAAGTAACAAATTTTCGC 59.419 34.615 0.00 0.00 0.00 4.70
2851 3014 0.040514 CGCGCTTGTTGTTTGGATCA 60.041 50.000 5.56 0.00 0.00 2.92
2855 3018 3.674138 GCGCTTGTTGTTTGGATCATGAT 60.674 43.478 8.25 8.25 0.00 2.45
2865 3036 8.557864 GTTGTTTGGATCATGATCTAAGATCAG 58.442 37.037 29.85 0.00 39.05 2.90
2926 3101 2.031683 CGGTTCTCGATTGGGTTAATGC 59.968 50.000 0.00 0.00 42.43 3.56
2927 3102 2.357952 GGTTCTCGATTGGGTTAATGCC 59.642 50.000 0.00 0.00 0.00 4.40
2928 3103 3.279434 GTTCTCGATTGGGTTAATGCCT 58.721 45.455 0.00 0.00 0.00 4.75
2929 3104 3.644966 TCTCGATTGGGTTAATGCCTT 57.355 42.857 0.00 0.00 0.00 4.35
2930 3105 4.764050 TCTCGATTGGGTTAATGCCTTA 57.236 40.909 0.00 0.00 0.00 2.69
2931 3106 5.105567 TCTCGATTGGGTTAATGCCTTAA 57.894 39.130 0.00 0.00 0.00 1.85
2932 3107 5.690865 TCTCGATTGGGTTAATGCCTTAAT 58.309 37.500 0.00 0.00 0.00 1.40
2933 3108 5.530915 TCTCGATTGGGTTAATGCCTTAATG 59.469 40.000 0.00 0.00 0.00 1.90
2948 3123 5.133660 TGCCTTAATGGGACTGGTATATGTT 59.866 40.000 0.00 0.00 36.00 2.71
2978 3153 5.360714 AGTTTCAGATTTCTGTTGCCTGAAA 59.639 36.000 10.62 10.62 45.75 2.69
2979 3154 6.409524 TTTCAGATTTCTGTTGCCTGAAAT 57.590 33.333 10.62 7.29 46.01 2.17
2999 3174 9.347240 CTGAAATATATCACCCAAGTTTCAGAT 57.653 33.333 15.91 0.00 46.87 2.90
3000 3175 9.699410 TGAAATATATCACCCAAGTTTCAGATT 57.301 29.630 0.00 0.00 32.34 2.40
3014 3189 9.311916 CAAGTTTCAGATTTATTTTGGTGTTGA 57.688 29.630 0.00 0.00 0.00 3.18
3016 3191 7.926018 AGTTTCAGATTTATTTTGGTGTTGACC 59.074 33.333 0.00 0.00 43.48 4.02
3022 3197 2.943449 TTTTGGTGTTGACCGAAACC 57.057 45.000 2.97 0.00 46.72 3.27
3024 3199 2.131776 TTGGTGTTGACCGAAACCTT 57.868 45.000 0.00 0.00 46.62 3.50
3025 3200 2.131776 TGGTGTTGACCGAAACCTTT 57.868 45.000 0.00 0.00 46.62 3.11
3026 3201 2.448453 TGGTGTTGACCGAAACCTTTT 58.552 42.857 0.00 0.00 46.62 2.27
3027 3202 2.826725 TGGTGTTGACCGAAACCTTTTT 59.173 40.909 0.00 0.00 46.62 1.94
3028 3203 3.183754 GGTGTTGACCGAAACCTTTTTG 58.816 45.455 0.00 0.00 30.61 2.44
3029 3204 3.183754 GTGTTGACCGAAACCTTTTTGG 58.816 45.455 3.70 3.70 42.93 3.28
3030 3205 6.412869 GGTGTTGACCGAAACCTTTTTGGT 62.413 45.833 9.89 9.89 41.28 3.67
3031 3206 7.118200 GGTGTTGACCGAAACCTTTTTGGTA 62.118 44.000 10.06 0.00 39.54 3.25
3032 3207 8.346782 GGTGTTGACCGAAACCTTTTTGGTAT 62.347 42.308 10.06 0.00 39.54 2.73
3033 3208 9.074801 GGTGTTGACCGAAACCTTTTTGGTATA 62.075 40.741 10.06 1.65 39.54 1.47
3044 3219 6.208988 CCTTTTTGGTATAGAGGGAAAAGC 57.791 41.667 0.00 0.00 34.46 3.51
3045 3220 5.714806 CCTTTTTGGTATAGAGGGAAAAGCA 59.285 40.000 0.00 0.00 34.46 3.91
3046 3221 6.350194 CCTTTTTGGTATAGAGGGAAAAGCAC 60.350 42.308 0.00 0.00 34.46 4.40
3047 3222 3.536956 TGGTATAGAGGGAAAAGCACG 57.463 47.619 0.00 0.00 0.00 5.34
3048 3223 2.835764 TGGTATAGAGGGAAAAGCACGT 59.164 45.455 0.00 0.00 0.00 4.49
3049 3224 3.118884 TGGTATAGAGGGAAAAGCACGTC 60.119 47.826 0.00 0.00 0.00 4.34
3050 3225 2.693267 ATAGAGGGAAAAGCACGTCC 57.307 50.000 0.00 0.00 0.00 4.79
3051 3226 0.245539 TAGAGGGAAAAGCACGTCCG 59.754 55.000 0.00 0.00 34.47 4.79
3052 3227 2.032071 AGGGAAAAGCACGTCCGG 59.968 61.111 0.00 0.00 34.47 5.14
3053 3228 3.733960 GGGAAAAGCACGTCCGGC 61.734 66.667 0.00 0.00 34.47 6.13
3061 3236 2.352001 CACGTCCGGCTATCGTCG 60.352 66.667 0.00 0.00 39.06 5.12
3164 3339 3.374220 CAGCCATCTGCAACAAAGAAA 57.626 42.857 0.00 0.00 44.83 2.52
3165 3340 3.314553 CAGCCATCTGCAACAAAGAAAG 58.685 45.455 0.00 0.00 44.83 2.62
3166 3341 2.961062 AGCCATCTGCAACAAAGAAAGT 59.039 40.909 0.00 0.00 44.83 2.66
3167 3342 3.054878 GCCATCTGCAACAAAGAAAGTG 58.945 45.455 0.00 0.00 40.77 3.16
3168 3343 3.645884 CCATCTGCAACAAAGAAAGTGG 58.354 45.455 0.00 0.00 0.00 4.00
3169 3344 3.553508 CCATCTGCAACAAAGAAAGTGGG 60.554 47.826 0.00 0.00 0.00 4.61
3170 3345 3.011566 TCTGCAACAAAGAAAGTGGGA 57.988 42.857 0.00 0.00 0.00 4.37
3171 3346 3.360867 TCTGCAACAAAGAAAGTGGGAA 58.639 40.909 0.00 0.00 0.00 3.97
3172 3347 3.381272 TCTGCAACAAAGAAAGTGGGAAG 59.619 43.478 0.00 0.00 0.00 3.46
3173 3348 2.430332 TGCAACAAAGAAAGTGGGAAGG 59.570 45.455 0.00 0.00 0.00 3.46
3174 3349 2.224042 GCAACAAAGAAAGTGGGAAGGG 60.224 50.000 0.00 0.00 0.00 3.95
3175 3350 3.295973 CAACAAAGAAAGTGGGAAGGGA 58.704 45.455 0.00 0.00 0.00 4.20
3176 3351 3.680777 ACAAAGAAAGTGGGAAGGGAA 57.319 42.857 0.00 0.00 0.00 3.97
3177 3352 3.989056 ACAAAGAAAGTGGGAAGGGAAA 58.011 40.909 0.00 0.00 0.00 3.13
3178 3353 3.960755 ACAAAGAAAGTGGGAAGGGAAAG 59.039 43.478 0.00 0.00 0.00 2.62
3179 3354 2.980246 AGAAAGTGGGAAGGGAAAGG 57.020 50.000 0.00 0.00 0.00 3.11
3180 3355 1.203063 AGAAAGTGGGAAGGGAAAGGC 60.203 52.381 0.00 0.00 0.00 4.35
3181 3356 0.860457 AAAGTGGGAAGGGAAAGGCT 59.140 50.000 0.00 0.00 0.00 4.58
3182 3357 0.405973 AAGTGGGAAGGGAAAGGCTC 59.594 55.000 0.00 0.00 0.00 4.70
3183 3358 0.772124 AGTGGGAAGGGAAAGGCTCA 60.772 55.000 0.00 0.00 0.00 4.26
3210 3386 1.419012 CTGATGCTCCCCTGCTTATCA 59.581 52.381 0.00 0.00 0.00 2.15
3215 3391 0.475475 CTCCCCTGCTTATCATGCCA 59.525 55.000 0.00 0.00 0.00 4.92
3267 3443 9.999009 GACGATACCGATCTAATATCAAACATA 57.001 33.333 0.00 0.00 39.50 2.29
3354 3530 8.055181 TCAGAGGTTAGCCAAATGAATAATCTT 58.945 33.333 0.00 0.00 37.19 2.40
3357 3533 8.154649 AGGTTAGCCAAATGAATAATCTTACG 57.845 34.615 0.00 0.00 37.19 3.18
3359 3535 8.283291 GGTTAGCCAAATGAATAATCTTACGAG 58.717 37.037 0.00 0.00 34.09 4.18
3361 3537 5.822519 AGCCAAATGAATAATCTTACGAGCA 59.177 36.000 0.00 0.00 0.00 4.26
3362 3538 6.488006 AGCCAAATGAATAATCTTACGAGCAT 59.512 34.615 0.00 0.00 0.00 3.79
3374 3550 5.408356 TCTTACGAGCATAAAGAGTTCACC 58.592 41.667 0.00 0.00 0.00 4.02
3376 3552 4.002906 ACGAGCATAAAGAGTTCACCAA 57.997 40.909 0.00 0.00 0.00 3.67
3378 3554 4.452455 ACGAGCATAAAGAGTTCACCAAAG 59.548 41.667 0.00 0.00 0.00 2.77
3381 3557 4.520492 AGCATAAAGAGTTCACCAAAGTGG 59.480 41.667 0.00 0.00 44.64 4.00
3435 3611 1.889829 GTAGAGCTCCATCTACGCCAT 59.110 52.381 10.93 0.00 41.56 4.40
3449 3625 1.280710 ACGCCATGAGGAACCATGTTA 59.719 47.619 0.00 0.00 41.65 2.41
3489 3665 2.032620 ACACAAGTCACTCCTCGAAGT 58.967 47.619 0.00 0.00 0.00 3.01
3509 3685 4.759782 AGTAGTCACCTGCAACATGATAC 58.240 43.478 0.00 0.00 0.00 2.24
3519 3695 0.726827 AACATGATACGTTGCAGCCG 59.273 50.000 0.00 6.34 0.00 5.52
3524 3700 1.215655 GATACGTTGCAGCCGCTAGG 61.216 60.000 0.00 0.00 39.64 3.02
3574 3750 9.612620 CAAGTTTCACAAGAATTATAACAGTCC 57.387 33.333 0.00 0.00 32.89 3.85
3596 3772 4.747108 CCTATCTCACCTACATGCTTTTCG 59.253 45.833 0.00 0.00 0.00 3.46
3598 3774 4.265904 TCTCACCTACATGCTTTTCGAA 57.734 40.909 0.00 0.00 0.00 3.71
3605 3781 5.354234 ACCTACATGCTTTTCGAATAAGTGG 59.646 40.000 16.24 10.96 0.00 4.00
3616 3792 5.560966 TCGAATAAGTGGAAATTTGGCTC 57.439 39.130 0.00 0.00 0.00 4.70
3617 3793 4.398044 TCGAATAAGTGGAAATTTGGCTCC 59.602 41.667 0.00 0.00 0.00 4.70
3618 3794 4.157656 CGAATAAGTGGAAATTTGGCTCCA 59.842 41.667 0.00 0.00 39.47 3.86
3622 3798 4.980339 AGTGGAAATTTGGCTCCATTTT 57.020 36.364 0.00 0.00 43.52 1.82
3624 3800 4.347583 AGTGGAAATTTGGCTCCATTTTCA 59.652 37.500 18.43 8.61 43.52 2.69
3706 3882 4.245660 CACTACATCTCACAACAATCCGT 58.754 43.478 0.00 0.00 0.00 4.69
3709 3885 3.262420 ACATCTCACAACAATCCGTAGC 58.738 45.455 0.00 0.00 0.00 3.58
3718 3894 4.188462 CAACAATCCGTAGCATACTTGGA 58.812 43.478 0.00 0.00 40.12 3.53
3738 3914 0.320683 TCCACGGCATCTCACAACAG 60.321 55.000 0.00 0.00 0.00 3.16
3743 3919 1.028868 GGCATCTCACAACAGCCCTC 61.029 60.000 0.00 0.00 39.42 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 8.495148 GCGAAAATTCCACAATTTGTATCTTTT 58.505 29.630 0.86 6.40 40.68 2.27
13 14 7.148820 CGCGAAAATTCCACAATTTGTATCTTT 60.149 33.333 0.00 0.00 40.68 2.52
14 15 6.307800 CGCGAAAATTCCACAATTTGTATCTT 59.692 34.615 0.00 0.00 40.68 2.40
15 16 5.799936 CGCGAAAATTCCACAATTTGTATCT 59.200 36.000 0.00 0.00 40.68 1.98
16 17 5.797934 TCGCGAAAATTCCACAATTTGTATC 59.202 36.000 6.20 0.00 40.68 2.24
17 18 5.704888 TCGCGAAAATTCCACAATTTGTAT 58.295 33.333 6.20 0.00 40.68 2.29
18 19 5.109662 TCGCGAAAATTCCACAATTTGTA 57.890 34.783 6.20 0.00 40.68 2.41
19 20 3.971150 TCGCGAAAATTCCACAATTTGT 58.029 36.364 6.20 0.00 40.68 2.83
20 21 4.963237 TTCGCGAAAATTCCACAATTTG 57.037 36.364 21.14 0.00 40.68 2.32
21 22 5.694006 TGAATTCGCGAAAATTCCACAATTT 59.306 32.000 27.23 10.65 42.95 1.82
22 23 5.226396 TGAATTCGCGAAAATTCCACAATT 58.774 33.333 27.23 11.21 42.45 2.32
23 24 4.804108 TGAATTCGCGAAAATTCCACAAT 58.196 34.783 27.23 1.47 42.45 2.71
24 25 4.230314 TGAATTCGCGAAAATTCCACAA 57.770 36.364 27.23 7.19 42.45 3.33
25 26 3.906014 TGAATTCGCGAAAATTCCACA 57.094 38.095 27.23 14.19 42.45 4.17
26 27 5.761818 AATTGAATTCGCGAAAATTCCAC 57.238 34.783 27.23 11.94 42.45 4.02
27 28 8.379161 CAAATAATTGAATTCGCGAAAATTCCA 58.621 29.630 27.23 17.31 42.45 3.53
28 29 7.370576 GCAAATAATTGAATTCGCGAAAATTCC 59.629 33.333 27.23 13.07 42.45 3.01
29 30 7.897291 TGCAAATAATTGAATTCGCGAAAATTC 59.103 29.630 27.23 24.27 43.10 2.17
30 31 7.737395 TGCAAATAATTGAATTCGCGAAAATT 58.263 26.923 27.23 25.82 38.94 1.82
31 32 7.288317 TGCAAATAATTGAATTCGCGAAAAT 57.712 28.000 27.23 17.87 38.94 1.82
32 33 6.696825 TGCAAATAATTGAATTCGCGAAAA 57.303 29.167 27.23 16.26 38.94 2.29
33 34 6.529477 TCATGCAAATAATTGAATTCGCGAAA 59.471 30.769 27.23 9.83 38.94 3.46
34 35 6.032717 TCATGCAAATAATTGAATTCGCGAA 58.967 32.000 25.66 25.66 38.94 4.70
35 36 5.576895 TCATGCAAATAATTGAATTCGCGA 58.423 33.333 3.71 3.71 38.94 5.87
36 37 5.869853 TCATGCAAATAATTGAATTCGCG 57.130 34.783 0.00 0.00 38.94 5.87
37 38 8.329583 TGAAATCATGCAAATAATTGAATTCGC 58.670 29.630 0.04 0.00 38.94 4.70
48 49 9.880064 CAAACATTTGTTGAAATCATGCAAATA 57.120 25.926 17.86 2.71 38.50 1.40
49 50 7.863375 CCAAACATTTGTTGAAATCATGCAAAT 59.137 29.630 14.93 14.93 39.76 2.32
50 51 7.194278 CCAAACATTTGTTGAAATCATGCAAA 58.806 30.769 12.66 12.66 38.44 3.68
51 52 6.238676 CCCAAACATTTGTTGAAATCATGCAA 60.239 34.615 0.00 0.00 38.44 4.08
52 53 5.238868 CCCAAACATTTGTTGAAATCATGCA 59.761 36.000 3.79 0.00 38.44 3.96
53 54 5.469421 TCCCAAACATTTGTTGAAATCATGC 59.531 36.000 3.79 0.00 38.44 4.06
54 55 7.493743 TTCCCAAACATTTGTTGAAATCATG 57.506 32.000 3.79 0.00 38.44 3.07
55 56 8.569641 CATTTCCCAAACATTTGTTGAAATCAT 58.430 29.630 19.15 6.98 41.07 2.45
56 57 7.772292 TCATTTCCCAAACATTTGTTGAAATCA 59.228 29.630 19.15 11.14 41.07 2.57
57 58 8.152309 TCATTTCCCAAACATTTGTTGAAATC 57.848 30.769 19.15 0.00 41.07 2.17
58 59 8.694581 ATCATTTCCCAAACATTTGTTGAAAT 57.305 26.923 17.63 17.63 42.25 2.17
59 60 9.618890 TTATCATTTCCCAAACATTTGTTGAAA 57.381 25.926 15.68 15.68 39.30 2.69
60 61 9.618890 TTTATCATTTCCCAAACATTTGTTGAA 57.381 25.926 3.79 3.72 38.44 2.69
61 62 9.790344 ATTTATCATTTCCCAAACATTTGTTGA 57.210 25.926 3.79 0.00 38.44 3.18
107 108 9.434420 AAGAACTGTTTTTGAATTCAATGAACA 57.566 25.926 29.40 29.40 38.61 3.18
108 109 9.693157 CAAGAACTGTTTTTGAATTCAATGAAC 57.307 29.630 25.81 25.81 35.55 3.18
109 110 9.650539 TCAAGAACTGTTTTTGAATTCAATGAA 57.349 25.926 21.10 15.50 35.55 2.57
110 111 9.650539 TTCAAGAACTGTTTTTGAATTCAATGA 57.349 25.926 26.06 14.10 36.28 2.57
125 126 9.450807 CGAACATTTTTAGAATTCAAGAACTGT 57.549 29.630 8.44 6.56 0.00 3.55
126 127 9.663904 TCGAACATTTTTAGAATTCAAGAACTG 57.336 29.630 8.44 5.99 0.00 3.16
127 128 9.884465 CTCGAACATTTTTAGAATTCAAGAACT 57.116 29.630 8.44 0.00 0.00 3.01
128 129 9.878599 TCTCGAACATTTTTAGAATTCAAGAAC 57.121 29.630 8.44 0.00 0.00 3.01
142 143 9.748708 TCATTCTTTTCAAATCTCGAACATTTT 57.251 25.926 0.24 0.00 0.00 1.82
143 144 9.185192 GTCATTCTTTTCAAATCTCGAACATTT 57.815 29.630 0.00 0.00 0.00 2.32
144 145 7.809806 GGTCATTCTTTTCAAATCTCGAACATT 59.190 33.333 0.00 0.00 0.00 2.71
145 146 7.040478 TGGTCATTCTTTTCAAATCTCGAACAT 60.040 33.333 0.00 0.00 0.00 2.71
146 147 6.262049 TGGTCATTCTTTTCAAATCTCGAACA 59.738 34.615 0.00 0.00 0.00 3.18
147 148 6.668323 TGGTCATTCTTTTCAAATCTCGAAC 58.332 36.000 0.00 0.00 0.00 3.95
148 149 6.875948 TGGTCATTCTTTTCAAATCTCGAA 57.124 33.333 0.00 0.00 0.00 3.71
149 150 7.452880 AATGGTCATTCTTTTCAAATCTCGA 57.547 32.000 0.00 0.00 0.00 4.04
150 151 8.524870 AAAATGGTCATTCTTTTCAAATCTCG 57.475 30.769 0.00 0.00 0.00 4.04
366 367 9.547753 TCCAAAAATTGTCCATCGAATTTAAAA 57.452 25.926 0.00 0.00 32.66 1.52
367 368 9.717942 ATCCAAAAATTGTCCATCGAATTTAAA 57.282 25.926 0.00 0.00 32.66 1.52
368 369 9.717942 AATCCAAAAATTGTCCATCGAATTTAA 57.282 25.926 0.00 0.00 32.66 1.52
369 370 9.717942 AAATCCAAAAATTGTCCATCGAATTTA 57.282 25.926 0.00 0.00 32.66 1.40
370 371 8.620116 AAATCCAAAAATTGTCCATCGAATTT 57.380 26.923 0.00 0.00 34.04 1.82
371 372 8.505625 CAAAATCCAAAAATTGTCCATCGAATT 58.494 29.630 0.00 0.00 0.00 2.17
372 373 7.877097 TCAAAATCCAAAAATTGTCCATCGAAT 59.123 29.630 0.00 0.00 0.00 3.34
373 374 7.212976 TCAAAATCCAAAAATTGTCCATCGAA 58.787 30.769 0.00 0.00 0.00 3.71
374 375 6.753180 TCAAAATCCAAAAATTGTCCATCGA 58.247 32.000 0.00 0.00 0.00 3.59
375 376 7.331440 TCATCAAAATCCAAAAATTGTCCATCG 59.669 33.333 0.00 0.00 0.00 3.84
376 377 8.550710 TCATCAAAATCCAAAAATTGTCCATC 57.449 30.769 0.00 0.00 0.00 3.51
377 378 8.921353 TTCATCAAAATCCAAAAATTGTCCAT 57.079 26.923 0.00 0.00 0.00 3.41
378 379 8.921353 ATTCATCAAAATCCAAAAATTGTCCA 57.079 26.923 0.00 0.00 0.00 4.02
419 420 9.179552 CGTTCATCAAATTCAGTATTTTGTTCA 57.820 29.630 0.00 0.00 34.19 3.18
420 421 9.180678 ACGTTCATCAAATTCAGTATTTTGTTC 57.819 29.630 0.00 0.00 34.19 3.18
421 422 9.528018 AACGTTCATCAAATTCAGTATTTTGTT 57.472 25.926 0.00 0.00 34.19 2.83
422 423 9.528018 AAACGTTCATCAAATTCAGTATTTTGT 57.472 25.926 0.00 0.00 34.19 2.83
456 457 9.575783 GTTCACCAATGTAGAAAAGTTAAACAA 57.424 29.630 0.00 0.00 0.00 2.83
457 458 8.740906 TGTTCACCAATGTAGAAAAGTTAAACA 58.259 29.630 0.00 0.00 0.00 2.83
458 459 9.744468 ATGTTCACCAATGTAGAAAAGTTAAAC 57.256 29.630 0.00 0.00 0.00 2.01
462 463 9.665719 AAAAATGTTCACCAATGTAGAAAAGTT 57.334 25.926 0.00 0.00 0.00 2.66
463 464 9.097257 CAAAAATGTTCACCAATGTAGAAAAGT 57.903 29.630 0.00 0.00 0.00 2.66
464 465 9.311916 TCAAAAATGTTCACCAATGTAGAAAAG 57.688 29.630 0.00 0.00 0.00 2.27
465 466 9.658799 TTCAAAAATGTTCACCAATGTAGAAAA 57.341 25.926 0.00 0.00 0.00 2.29
466 467 9.658799 TTTCAAAAATGTTCACCAATGTAGAAA 57.341 25.926 0.00 0.00 0.00 2.52
467 468 9.829507 ATTTCAAAAATGTTCACCAATGTAGAA 57.170 25.926 0.00 0.00 0.00 2.10
468 469 9.474920 GATTTCAAAAATGTTCACCAATGTAGA 57.525 29.630 0.00 0.00 0.00 2.59
469 470 8.427012 CGATTTCAAAAATGTTCACCAATGTAG 58.573 33.333 0.00 0.00 0.00 2.74
470 471 8.138074 TCGATTTCAAAAATGTTCACCAATGTA 58.862 29.630 0.00 0.00 0.00 2.29
471 472 6.983307 TCGATTTCAAAAATGTTCACCAATGT 59.017 30.769 0.00 0.00 0.00 2.71
472 473 7.405469 TCGATTTCAAAAATGTTCACCAATG 57.595 32.000 0.00 0.00 0.00 2.82
473 474 7.118101 CCATCGATTTCAAAAATGTTCACCAAT 59.882 33.333 0.00 0.00 0.00 3.16
474 475 6.423302 CCATCGATTTCAAAAATGTTCACCAA 59.577 34.615 0.00 0.00 0.00 3.67
475 476 5.925397 CCATCGATTTCAAAAATGTTCACCA 59.075 36.000 0.00 0.00 0.00 4.17
476 477 5.348451 CCCATCGATTTCAAAAATGTTCACC 59.652 40.000 0.00 0.00 0.00 4.02
477 478 6.155827 TCCCATCGATTTCAAAAATGTTCAC 58.844 36.000 0.00 0.00 0.00 3.18
478 479 6.338214 TCCCATCGATTTCAAAAATGTTCA 57.662 33.333 0.00 0.00 0.00 3.18
479 480 7.650834 TTTCCCATCGATTTCAAAAATGTTC 57.349 32.000 0.00 0.00 0.00 3.18
480 481 8.443953 TTTTTCCCATCGATTTCAAAAATGTT 57.556 26.923 0.00 0.00 0.00 2.71
481 482 8.505625 CATTTTTCCCATCGATTTCAAAAATGT 58.494 29.630 27.50 12.83 41.73 2.71
482 483 8.505625 ACATTTTTCCCATCGATTTCAAAAATG 58.494 29.630 30.30 30.30 46.74 2.32
483 484 8.620116 ACATTTTTCCCATCGATTTCAAAAAT 57.380 26.923 17.28 17.28 35.04 1.82
484 485 7.172361 GGACATTTTTCCCATCGATTTCAAAAA 59.828 33.333 15.21 15.21 0.00 1.94
485 486 6.648725 GGACATTTTTCCCATCGATTTCAAAA 59.351 34.615 0.00 0.00 0.00 2.44
486 487 6.162777 GGACATTTTTCCCATCGATTTCAAA 58.837 36.000 0.00 0.00 0.00 2.69
487 488 5.244851 TGGACATTTTTCCCATCGATTTCAA 59.755 36.000 0.00 0.00 34.33 2.69
488 489 4.769488 TGGACATTTTTCCCATCGATTTCA 59.231 37.500 0.00 0.00 34.33 2.69
489 490 5.102313 GTGGACATTTTTCCCATCGATTTC 58.898 41.667 0.00 0.00 34.33 2.17
490 491 4.526262 TGTGGACATTTTTCCCATCGATTT 59.474 37.500 0.00 0.00 34.33 2.17
491 492 4.085733 TGTGGACATTTTTCCCATCGATT 58.914 39.130 0.00 0.00 34.33 3.34
492 493 3.696045 TGTGGACATTTTTCCCATCGAT 58.304 40.909 0.00 0.00 34.33 3.59
493 494 3.147553 TGTGGACATTTTTCCCATCGA 57.852 42.857 0.00 0.00 34.33 3.59
494 495 3.932545 TTGTGGACATTTTTCCCATCG 57.067 42.857 0.00 0.00 34.33 3.84
495 496 6.709846 TCAAATTTGTGGACATTTTTCCCATC 59.290 34.615 17.47 0.00 34.33 3.51
496 497 6.599445 TCAAATTTGTGGACATTTTTCCCAT 58.401 32.000 17.47 0.00 34.33 4.00
497 498 5.994250 TCAAATTTGTGGACATTTTTCCCA 58.006 33.333 17.47 0.00 34.33 4.37
498 499 6.934048 TTCAAATTTGTGGACATTTTTCCC 57.066 33.333 17.47 0.00 34.33 3.97
499 500 7.914871 CCTTTTCAAATTTGTGGACATTTTTCC 59.085 33.333 17.47 0.00 36.03 3.13
500 501 8.672815 TCCTTTTCAAATTTGTGGACATTTTTC 58.327 29.630 17.47 0.00 0.00 2.29
501 502 8.572855 TCCTTTTCAAATTTGTGGACATTTTT 57.427 26.923 17.47 0.00 0.00 1.94
502 503 8.572855 TTCCTTTTCAAATTTGTGGACATTTT 57.427 26.923 17.47 0.00 0.00 1.82
503 504 8.572855 TTTCCTTTTCAAATTTGTGGACATTT 57.427 26.923 17.47 0.00 0.00 2.32
504 505 8.750515 ATTTCCTTTTCAAATTTGTGGACATT 57.249 26.923 17.47 6.55 0.00 2.71
505 506 8.750515 AATTTCCTTTTCAAATTTGTGGACAT 57.249 26.923 17.47 14.65 30.74 3.06
506 507 7.010923 CGAATTTCCTTTTCAAATTTGTGGACA 59.989 33.333 17.47 13.34 34.30 4.02
507 508 7.344441 CGAATTTCCTTTTCAAATTTGTGGAC 58.656 34.615 17.47 8.49 34.30 4.02
508 509 6.018343 GCGAATTTCCTTTTCAAATTTGTGGA 60.018 34.615 17.47 16.21 37.12 4.02
509 510 6.135400 GCGAATTTCCTTTTCAAATTTGTGG 58.865 36.000 17.47 14.50 37.12 4.17
510 511 6.713520 TGCGAATTTCCTTTTCAAATTTGTG 58.286 32.000 17.47 7.06 37.12 3.33
511 512 6.917217 TGCGAATTTCCTTTTCAAATTTGT 57.083 29.167 17.47 0.00 37.12 2.83
512 513 8.612233 TTTTGCGAATTTCCTTTTCAAATTTG 57.388 26.923 12.15 12.15 37.55 2.32
513 514 9.800433 ATTTTTGCGAATTTCCTTTTCAAATTT 57.200 22.222 0.00 0.00 34.30 1.82
516 517 9.875675 CATATTTTTGCGAATTTCCTTTTCAAA 57.124 25.926 0.00 0.00 0.00 2.69
517 518 8.014517 GCATATTTTTGCGAATTTCCTTTTCAA 58.985 29.630 0.00 0.00 32.06 2.69
518 519 7.172190 TGCATATTTTTGCGAATTTCCTTTTCA 59.828 29.630 0.00 0.00 45.77 2.69
519 520 7.517321 TGCATATTTTTGCGAATTTCCTTTTC 58.483 30.769 0.00 0.00 45.77 2.29
520 521 7.432350 TGCATATTTTTGCGAATTTCCTTTT 57.568 28.000 0.00 0.00 45.77 2.27
521 522 7.432350 TTGCATATTTTTGCGAATTTCCTTT 57.568 28.000 0.00 0.00 45.77 3.11
522 523 7.432350 TTTGCATATTTTTGCGAATTTCCTT 57.568 28.000 0.00 0.00 45.77 3.36
523 524 7.432350 TTTTGCATATTTTTGCGAATTTCCT 57.568 28.000 0.29 0.00 43.66 3.36
524 525 8.672214 AATTTTGCATATTTTTGCGAATTTCC 57.328 26.923 0.29 0.00 43.66 3.13
558 559 9.653287 CCTGTTTTACTTTTCCTTTTCTCTTTT 57.347 29.630 0.00 0.00 0.00 2.27
559 560 9.031537 TCCTGTTTTACTTTTCCTTTTCTCTTT 57.968 29.630 0.00 0.00 0.00 2.52
560 561 8.589701 TCCTGTTTTACTTTTCCTTTTCTCTT 57.410 30.769 0.00 0.00 0.00 2.85
561 562 8.589701 TTCCTGTTTTACTTTTCCTTTTCTCT 57.410 30.769 0.00 0.00 0.00 3.10
562 563 9.647797 TTTTCCTGTTTTACTTTTCCTTTTCTC 57.352 29.630 0.00 0.00 0.00 2.87
612 613 1.071542 CCAGCCCAATTTCCGGTTTTT 59.928 47.619 0.00 0.00 0.00 1.94
613 614 0.684535 CCAGCCCAATTTCCGGTTTT 59.315 50.000 0.00 0.00 0.00 2.43
614 615 1.826340 GCCAGCCCAATTTCCGGTTT 61.826 55.000 0.00 0.00 0.00 3.27
615 616 2.282783 GCCAGCCCAATTTCCGGTT 61.283 57.895 0.00 0.00 0.00 4.44
616 617 2.679996 GCCAGCCCAATTTCCGGT 60.680 61.111 0.00 0.00 0.00 5.28
617 618 3.460868 GGCCAGCCCAATTTCCGG 61.461 66.667 0.00 0.00 0.00 5.14
627 628 2.895372 CGTTCGTATGGGCCAGCC 60.895 66.667 13.78 3.46 0.00 4.85
628 629 2.895372 CCGTTCGTATGGGCCAGC 60.895 66.667 13.78 6.59 0.00 4.85
629 630 2.895372 GCCGTTCGTATGGGCCAG 60.895 66.667 13.78 0.00 41.01 4.85
633 634 2.895372 GCTGGCCGTTCGTATGGG 60.895 66.667 0.00 0.00 0.00 4.00
634 635 3.261951 CGCTGGCCGTTCGTATGG 61.262 66.667 0.00 0.00 0.00 2.74
635 636 3.925238 GCGCTGGCCGTTCGTATG 61.925 66.667 0.00 0.00 39.71 2.39
645 646 2.859273 ATCCTATATGGCGCGCTGGC 62.859 60.000 32.29 15.45 45.12 4.85
646 647 0.807667 GATCCTATATGGCGCGCTGG 60.808 60.000 32.29 21.16 35.26 4.85
647 648 0.807667 GGATCCTATATGGCGCGCTG 60.808 60.000 32.29 13.50 35.26 5.18
648 649 1.517832 GGATCCTATATGGCGCGCT 59.482 57.895 32.29 15.35 35.26 5.92
649 650 1.521681 GGGATCCTATATGGCGCGC 60.522 63.158 25.94 25.94 35.26 6.86
657 658 2.038329 CGGGCGGGGGATCCTATA 59.962 66.667 12.58 0.00 0.00 1.31
710 715 1.005394 GGAGAAAAGCCGTCCGACA 60.005 57.895 0.00 0.00 0.00 4.35
711 716 1.005394 TGGAGAAAAGCCGTCCGAC 60.005 57.895 0.00 0.00 32.51 4.79
756 763 3.181440 TGGGAAGATCACTTTTGTCTGCT 60.181 43.478 0.00 0.00 36.39 4.24
822 829 2.181777 GGCAGTCGACGAGCATCA 59.818 61.111 28.48 0.00 33.17 3.07
830 837 1.795286 CAAGAACAAGAGGCAGTCGAC 59.205 52.381 7.70 7.70 0.00 4.20
837 844 1.979155 GCCCCCAAGAACAAGAGGC 60.979 63.158 0.00 0.00 0.00 4.70
868 875 7.386299 ACTGCTATAACAGAACAAGAAGACAAG 59.614 37.037 10.11 0.00 40.25 3.16
875 882 7.801716 AAAACACTGCTATAACAGAACAAGA 57.198 32.000 10.11 0.00 40.25 3.02
918 925 1.402588 CGGCATGCACATTTAACAGCA 60.403 47.619 21.36 0.00 41.73 4.41
1009 1016 0.671472 CTGCCAGTGATGAGCGACAA 60.671 55.000 0.00 0.00 0.00 3.18
1108 1115 5.592282 TGTTGTGTGTTTTACCTGTGATGAT 59.408 36.000 0.00 0.00 0.00 2.45
1148 1156 0.247814 CTTCGTCATTGCATGCCGTC 60.248 55.000 16.68 0.69 32.83 4.79
1149 1157 0.955428 ACTTCGTCATTGCATGCCGT 60.955 50.000 16.68 0.00 32.83 5.68
1159 1167 2.224209 ACTTCGGGTGAAACTTCGTCAT 60.224 45.455 0.00 0.00 36.74 3.06
1205 1241 1.463674 ATGGAACCTTCGAACATGCC 58.536 50.000 0.00 0.00 0.00 4.40
1219 1255 2.158325 AGTTTCCTTGCCCTGAATGGAA 60.158 45.455 0.00 0.00 38.35 3.53
1245 1281 4.904116 TGTGAATGAACAAAACACGAGTC 58.096 39.130 0.00 0.00 34.72 3.36
1255 1295 1.547675 GGCCCTCCTGTGAATGAACAA 60.548 52.381 0.00 0.00 0.00 2.83
1256 1296 0.038166 GGCCCTCCTGTGAATGAACA 59.962 55.000 0.00 0.00 0.00 3.18
1257 1297 0.329596 AGGCCCTCCTGTGAATGAAC 59.670 55.000 0.00 0.00 42.34 3.18
1258 1298 1.839994 CTAGGCCCTCCTGTGAATGAA 59.160 52.381 0.00 0.00 44.08 2.57
1264 1304 3.854669 CCGCTAGGCCCTCCTGTG 61.855 72.222 0.00 0.00 44.08 3.66
1282 1322 2.413765 GACGTCTCCAGGCCGATC 59.586 66.667 8.70 0.00 0.00 3.69
1510 1550 1.153289 CGAGATGGAGGGGTTGCAG 60.153 63.158 0.00 0.00 0.00 4.41
1511 1551 0.982852 ATCGAGATGGAGGGGTTGCA 60.983 55.000 0.00 0.00 0.00 4.08
1512 1552 0.250081 GATCGAGATGGAGGGGTTGC 60.250 60.000 0.00 0.00 0.00 4.17
1521 1564 6.765915 TGGAGTATCATAAGATCGAGATGG 57.234 41.667 0.00 0.00 36.25 3.51
1549 1592 4.039730 AGAGCAGCATACATACGGAAGAAT 59.960 41.667 0.00 0.00 0.00 2.40
1557 1600 5.991606 TGGTTATTCAGAGCAGCATACATAC 59.008 40.000 0.00 0.00 0.00 2.39
1564 1607 2.086869 GCTTGGTTATTCAGAGCAGCA 58.913 47.619 0.00 0.00 33.68 4.41
1585 1628 1.064017 AGAGCACAAGGGTTTTGGACA 60.064 47.619 0.00 0.00 0.00 4.02
1634 1677 3.003173 TCGGACAGCTGGAAGGGG 61.003 66.667 19.93 0.91 0.00 4.79
1646 1689 3.471244 CTCGACGCCATCCTCGGAC 62.471 68.421 0.00 0.00 0.00 4.79
1710 1753 9.809395 TTGAGGTATTGACTACTACTGCTATAT 57.191 33.333 0.00 0.00 0.00 0.86
1711 1754 9.809395 ATTGAGGTATTGACTACTACTGCTATA 57.191 33.333 0.00 0.00 0.00 1.31
1712 1755 8.713708 ATTGAGGTATTGACTACTACTGCTAT 57.286 34.615 0.00 0.00 0.00 2.97
1713 1756 9.809395 ATATTGAGGTATTGACTACTACTGCTA 57.191 33.333 0.00 0.00 0.00 3.49
1714 1757 8.713708 ATATTGAGGTATTGACTACTACTGCT 57.286 34.615 0.00 0.00 0.00 4.24
1730 1773 8.140112 ACTGTCAGTTCTCTAAATATTGAGGT 57.860 34.615 0.00 0.00 0.00 3.85
1760 1803 8.942338 TGACACAAATGTTAGTATCAGGATAC 57.058 34.615 10.72 10.72 39.95 2.24
1789 1889 7.013083 GCAGAAAGTGACCTGATTGATCATAAT 59.987 37.037 0.00 0.00 36.02 1.28
1907 2007 3.983044 ATTCCCTTCGGATAGGTATGC 57.017 47.619 0.00 0.00 38.24 3.14
1925 2025 8.322906 TGTCATTGAGTTTATCGAACTGAATT 57.677 30.769 0.00 0.00 45.90 2.17
1939 2039 6.262273 ACCATACGTTTTCTTGTCATTGAGTT 59.738 34.615 0.00 0.00 0.00 3.01
1966 2067 6.418101 TCTCCAACTCCAAAGAATCATAAGG 58.582 40.000 0.00 0.00 0.00 2.69
1970 2071 6.324601 AGATCTCCAACTCCAAAGAATCAT 57.675 37.500 0.00 0.00 0.00 2.45
1973 2074 7.637511 ACAATAGATCTCCAACTCCAAAGAAT 58.362 34.615 0.00 0.00 0.00 2.40
1983 2084 4.755411 TCAACCGACAATAGATCTCCAAC 58.245 43.478 0.00 0.00 0.00 3.77
1991 2092 5.924254 CAGTAACAGTTCAACCGACAATAGA 59.076 40.000 0.00 0.00 0.00 1.98
1992 2093 5.924254 TCAGTAACAGTTCAACCGACAATAG 59.076 40.000 0.00 0.00 0.00 1.73
1993 2094 5.845103 TCAGTAACAGTTCAACCGACAATA 58.155 37.500 0.00 0.00 0.00 1.90
1994 2095 4.699637 TCAGTAACAGTTCAACCGACAAT 58.300 39.130 0.00 0.00 0.00 2.71
1995 2096 4.126208 TCAGTAACAGTTCAACCGACAA 57.874 40.909 0.00 0.00 0.00 3.18
1996 2097 3.804786 TCAGTAACAGTTCAACCGACA 57.195 42.857 0.00 0.00 0.00 4.35
1997 2098 3.432252 CCATCAGTAACAGTTCAACCGAC 59.568 47.826 0.00 0.00 0.00 4.79
1998 2099 3.070446 ACCATCAGTAACAGTTCAACCGA 59.930 43.478 0.00 0.00 0.00 4.69
1999 2100 3.399330 ACCATCAGTAACAGTTCAACCG 58.601 45.455 0.00 0.00 0.00 4.44
2000 2101 5.767816 AAACCATCAGTAACAGTTCAACC 57.232 39.130 0.00 0.00 0.00 3.77
2001 2102 6.019881 GCAAAAACCATCAGTAACAGTTCAAC 60.020 38.462 0.00 0.00 0.00 3.18
2074 2175 5.376947 GCTCTTTAGCGTGTAGTATGTTG 57.623 43.478 0.00 0.00 39.39 3.33
2107 2208 9.717942 CTTCCTCTGAATAATAATACCTTGAGG 57.282 37.037 0.00 0.00 38.80 3.86
2163 2300 6.693315 TGAAACTTTTTAAGACACTCCCAG 57.307 37.500 0.00 0.00 0.00 4.45
2211 2348 6.271391 TCCTTCCTCCTGTTTCAGTAACATAA 59.729 38.462 0.00 0.00 45.31 1.90
2316 2455 1.005450 AGAAAAATAAGCCGGGGAGCA 59.995 47.619 2.18 0.00 34.23 4.26
2400 2539 0.322322 AACGCCGTGGACATAAAGGA 59.678 50.000 0.00 0.00 0.00 3.36
2422 2563 8.200792 TGCCTCTGCAAGTTAAAAAGAAAATTA 58.799 29.630 0.00 0.00 46.66 1.40
2589 2736 0.827507 GGTTGCTGCTCCCTGGAAAA 60.828 55.000 0.00 0.00 0.00 2.29
2590 2737 1.228552 GGTTGCTGCTCCCTGGAAA 60.229 57.895 0.00 0.00 0.00 3.13
2711 2858 2.037136 CCCAGAGTTGCTTCGCCAG 61.037 63.158 0.00 0.00 0.00 4.85
2767 2914 2.354259 CTTTCTCTCGCCTGCTTTCAT 58.646 47.619 0.00 0.00 0.00 2.57
2814 2964 3.972502 GCGCGAAAATTTGTTACTTCACT 59.027 39.130 12.10 0.00 0.00 3.41
2820 2970 4.027214 ACAACAAGCGCGAAAATTTGTTAC 60.027 37.500 18.90 0.00 40.62 2.50
2834 2997 3.557577 TCATGATCCAAACAACAAGCG 57.442 42.857 0.00 0.00 0.00 4.68
2851 3014 5.784390 AGGGTGCATACTGATCTTAGATCAT 59.216 40.000 23.14 15.79 0.00 2.45
2855 3018 3.643320 CCAGGGTGCATACTGATCTTAGA 59.357 47.826 18.74 0.00 36.86 2.10
2865 3036 5.652452 AGAGAAATTTAACCAGGGTGCATAC 59.348 40.000 0.00 0.00 0.00 2.39
2926 3101 8.047310 GGATAACATATACCAGTCCCATTAAGG 58.953 40.741 0.00 0.00 37.03 2.69
2927 3102 8.826765 AGGATAACATATACCAGTCCCATTAAG 58.173 37.037 0.00 0.00 0.00 1.85
2928 3103 8.751215 AGGATAACATATACCAGTCCCATTAA 57.249 34.615 0.00 0.00 0.00 1.40
2929 3104 9.488762 CTAGGATAACATATACCAGTCCCATTA 57.511 37.037 0.00 0.00 0.00 1.90
2930 3105 7.962003 ACTAGGATAACATATACCAGTCCCATT 59.038 37.037 0.00 0.00 0.00 3.16
2931 3106 7.488205 ACTAGGATAACATATACCAGTCCCAT 58.512 38.462 0.00 0.00 0.00 4.00
2932 3107 6.871035 ACTAGGATAACATATACCAGTCCCA 58.129 40.000 0.00 0.00 0.00 4.37
2933 3108 7.793948 AACTAGGATAACATATACCAGTCCC 57.206 40.000 0.00 0.00 0.00 4.46
2948 3123 6.823689 GGCAACAGAAATCTGAAACTAGGATA 59.176 38.462 16.93 0.00 46.59 2.59
2999 3174 5.127356 AGGTTTCGGTCAACACCAAAATAAA 59.873 36.000 0.00 0.00 44.02 1.40
3000 3175 4.645588 AGGTTTCGGTCAACACCAAAATAA 59.354 37.500 0.00 0.00 44.02 1.40
3022 3197 6.621613 GTGCTTTTCCCTCTATACCAAAAAG 58.378 40.000 0.00 0.00 36.99 2.27
3024 3199 4.698304 CGTGCTTTTCCCTCTATACCAAAA 59.302 41.667 0.00 0.00 0.00 2.44
3025 3200 4.258543 CGTGCTTTTCCCTCTATACCAAA 58.741 43.478 0.00 0.00 0.00 3.28
3026 3201 3.262405 ACGTGCTTTTCCCTCTATACCAA 59.738 43.478 0.00 0.00 0.00 3.67
3027 3202 2.835764 ACGTGCTTTTCCCTCTATACCA 59.164 45.455 0.00 0.00 0.00 3.25
3028 3203 3.455327 GACGTGCTTTTCCCTCTATACC 58.545 50.000 0.00 0.00 0.00 2.73
3029 3204 3.455327 GGACGTGCTTTTCCCTCTATAC 58.545 50.000 0.00 0.00 0.00 1.47
3030 3205 2.100252 CGGACGTGCTTTTCCCTCTATA 59.900 50.000 5.27 0.00 0.00 1.31
3031 3206 1.134788 CGGACGTGCTTTTCCCTCTAT 60.135 52.381 5.27 0.00 0.00 1.98
3032 3207 0.245539 CGGACGTGCTTTTCCCTCTA 59.754 55.000 5.27 0.00 0.00 2.43
3033 3208 1.004918 CGGACGTGCTTTTCCCTCT 60.005 57.895 5.27 0.00 0.00 3.69
3034 3209 2.033194 CCGGACGTGCTTTTCCCTC 61.033 63.158 5.27 0.00 0.00 4.30
3035 3210 2.032071 CCGGACGTGCTTTTCCCT 59.968 61.111 5.27 0.00 0.00 4.20
3036 3211 2.791501 TAGCCGGACGTGCTTTTCCC 62.792 60.000 5.05 0.00 40.23 3.97
3037 3212 0.743345 ATAGCCGGACGTGCTTTTCC 60.743 55.000 5.05 0.00 40.23 3.13
3038 3213 0.651031 GATAGCCGGACGTGCTTTTC 59.349 55.000 5.05 0.00 40.23 2.29
3039 3214 1.082117 CGATAGCCGGACGTGCTTTT 61.082 55.000 5.05 0.00 40.23 2.27
3040 3215 1.518572 CGATAGCCGGACGTGCTTT 60.519 57.895 5.05 0.00 40.23 3.51
3041 3216 2.104331 CGATAGCCGGACGTGCTT 59.896 61.111 5.05 0.00 40.23 3.91
3042 3217 3.122250 GACGATAGCCGGACGTGCT 62.122 63.158 5.05 4.66 43.93 4.40
3043 3218 2.654404 GACGATAGCCGGACGTGC 60.654 66.667 5.05 0.00 43.93 5.34
3044 3219 2.352001 CGACGATAGCCGGACGTG 60.352 66.667 5.05 2.79 43.93 4.49
3051 3226 3.900388 AATCACTCTACGACGATAGCC 57.100 47.619 0.00 0.00 42.67 3.93
3052 3227 3.901290 CGAAATCACTCTACGACGATAGC 59.099 47.826 0.00 0.00 42.67 2.97
3053 3228 4.456019 CCGAAATCACTCTACGACGATAG 58.544 47.826 0.00 0.00 46.19 2.08
3061 3236 4.363999 CATCAGTCCCGAAATCACTCTAC 58.636 47.826 0.00 0.00 0.00 2.59
3102 3277 2.741759 TAATGACGCTGAGCAAGACA 57.258 45.000 4.88 0.00 0.00 3.41
3109 3284 2.470628 CGAAGCTCATAATGACGCTGAG 59.529 50.000 0.00 0.00 39.50 3.35
3111 3286 1.524355 CCGAAGCTCATAATGACGCTG 59.476 52.381 0.00 0.00 33.43 5.18
3114 3289 2.128035 GACCCGAAGCTCATAATGACG 58.872 52.381 0.00 0.00 0.00 4.35
3150 3325 3.011566 TCCCACTTTCTTTGTTGCAGA 57.988 42.857 0.00 0.00 0.00 4.26
3151 3326 3.491447 CCTTCCCACTTTCTTTGTTGCAG 60.491 47.826 0.00 0.00 0.00 4.41
3154 3329 3.295973 TCCCTTCCCACTTTCTTTGTTG 58.704 45.455 0.00 0.00 0.00 3.33
3156 3331 3.680777 TTCCCTTCCCACTTTCTTTGT 57.319 42.857 0.00 0.00 0.00 2.83
3157 3332 3.321968 CCTTTCCCTTCCCACTTTCTTTG 59.678 47.826 0.00 0.00 0.00 2.77
3158 3333 3.576861 CCTTTCCCTTCCCACTTTCTTT 58.423 45.455 0.00 0.00 0.00 2.52
3159 3334 2.756576 GCCTTTCCCTTCCCACTTTCTT 60.757 50.000 0.00 0.00 0.00 2.52
3161 3336 1.203063 AGCCTTTCCCTTCCCACTTTC 60.203 52.381 0.00 0.00 0.00 2.62
3162 3337 0.860457 AGCCTTTCCCTTCCCACTTT 59.140 50.000 0.00 0.00 0.00 2.66
3163 3338 0.405973 GAGCCTTTCCCTTCCCACTT 59.594 55.000 0.00 0.00 0.00 3.16
3164 3339 0.772124 TGAGCCTTTCCCTTCCCACT 60.772 55.000 0.00 0.00 0.00 4.00
3165 3340 0.322906 CTGAGCCTTTCCCTTCCCAC 60.323 60.000 0.00 0.00 0.00 4.61
3166 3341 2.078452 CTGAGCCTTTCCCTTCCCA 58.922 57.895 0.00 0.00 0.00 4.37
3167 3342 1.379176 GCTGAGCCTTTCCCTTCCC 60.379 63.158 0.00 0.00 0.00 3.97
3168 3343 0.393673 GAGCTGAGCCTTTCCCTTCC 60.394 60.000 0.00 0.00 0.00 3.46
3169 3344 0.617935 AGAGCTGAGCCTTTCCCTTC 59.382 55.000 0.00 0.00 0.00 3.46
3170 3345 0.327591 CAGAGCTGAGCCTTTCCCTT 59.672 55.000 0.00 0.00 0.00 3.95
3171 3346 1.989620 CAGAGCTGAGCCTTTCCCT 59.010 57.895 0.00 0.00 0.00 4.20
3172 3347 1.748500 GCAGAGCTGAGCCTTTCCC 60.749 63.158 0.00 0.00 0.00 3.97
3173 3348 1.299321 AGCAGAGCTGAGCCTTTCC 59.701 57.895 0.00 0.00 37.57 3.13
3183 3358 2.744243 GGGGAGCATCAGCAGAGCT 61.744 63.158 3.41 3.41 45.49 4.09
3215 3391 3.142393 CGATTCGATCCAGGGGCT 58.858 61.111 0.00 0.00 0.00 5.19
3267 3443 7.977789 TGCGATGTAATGGTATGATACATTT 57.022 32.000 4.83 0.33 39.64 2.32
3268 3444 7.977789 TTGCGATGTAATGGTATGATACATT 57.022 32.000 4.83 5.47 39.64 2.71
3274 3450 9.586435 CTAGATTATTGCGATGTAATGGTATGA 57.414 33.333 0.00 0.00 0.00 2.15
3278 3454 9.507329 AATTCTAGATTATTGCGATGTAATGGT 57.493 29.630 0.00 0.00 0.00 3.55
3354 3530 4.794278 TGGTGAACTCTTTATGCTCGTA 57.206 40.909 0.00 0.00 0.00 3.43
3357 3533 5.335191 CCACTTTGGTGAACTCTTTATGCTC 60.335 44.000 0.00 0.00 45.61 4.26
3359 3535 4.518970 TCCACTTTGGTGAACTCTTTATGC 59.481 41.667 0.00 0.00 45.61 3.14
3361 3537 6.605594 TGTTTCCACTTTGGTGAACTCTTTAT 59.394 34.615 12.25 0.00 45.61 1.40
3362 3538 5.946972 TGTTTCCACTTTGGTGAACTCTTTA 59.053 36.000 12.25 0.00 45.61 1.85
3368 3544 4.982295 GCTTATGTTTCCACTTTGGTGAAC 59.018 41.667 0.00 7.05 45.61 3.18
3374 3550 6.458210 AGGATTTGCTTATGTTTCCACTTTG 58.542 36.000 0.00 0.00 0.00 2.77
3376 3552 7.775053 TTAGGATTTGCTTATGTTTCCACTT 57.225 32.000 0.00 0.00 0.00 3.16
3378 3554 7.771183 TCATTAGGATTTGCTTATGTTTCCAC 58.229 34.615 0.00 0.00 0.00 4.02
3412 3588 1.268352 GCGTAGATGGAGCTCTACCAG 59.732 57.143 14.64 0.00 43.05 4.00
3432 3608 3.696051 CCACTTAACATGGTTCCTCATGG 59.304 47.826 9.25 0.00 46.33 3.66
3435 3611 4.588899 CATCCACTTAACATGGTTCCTCA 58.411 43.478 0.00 0.00 38.47 3.86
3449 3625 1.447838 CGGCTACGTGCATCCACTT 60.448 57.895 0.00 0.00 45.15 3.16
3471 3647 3.488363 ACTACTTCGAGGAGTGACTTGT 58.512 45.455 0.00 0.00 0.00 3.16
3472 3648 3.502595 TGACTACTTCGAGGAGTGACTTG 59.497 47.826 0.00 0.00 0.00 3.16
3489 3665 3.194755 ACGTATCATGTTGCAGGTGACTA 59.805 43.478 0.00 0.00 40.21 2.59
3533 3709 7.095910 TGTGAAACTTGCCCATACATTAAATG 58.904 34.615 0.00 0.00 38.04 2.32
3574 3750 5.592054 TCGAAAAGCATGTAGGTGAGATAG 58.408 41.667 0.00 0.00 0.00 2.08
3596 3772 5.659440 TGGAGCCAAATTTCCACTTATTC 57.341 39.130 0.00 0.00 38.53 1.75
3598 3774 6.625532 AAATGGAGCCAAATTTCCACTTAT 57.374 33.333 0.00 0.00 45.66 1.73
3605 3781 7.466805 GCTTTATGAAAATGGAGCCAAATTTC 58.533 34.615 17.42 17.42 36.86 2.17
3706 3882 1.070134 GCCGTGGATCCAAGTATGCTA 59.930 52.381 23.72 0.00 0.00 3.49
3709 3885 2.146342 GATGCCGTGGATCCAAGTATG 58.854 52.381 23.72 11.58 0.00 2.39
3718 3894 0.324614 TGTTGTGAGATGCCGTGGAT 59.675 50.000 0.00 0.00 0.00 3.41
3738 3914 2.189784 GGGCTAAAGGTCGAGGGC 59.810 66.667 0.00 0.00 0.00 5.19
3743 3919 3.000727 CAAACTAGTGGGCTAAAGGTCG 58.999 50.000 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.