Multiple sequence alignment - TraesCS5B01G263600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G263600 chr5B 100.000 2360 0 0 1 2360 448130323 448127964 0.000000e+00 4359
1 TraesCS5B01G263600 chr5D 94.425 1130 50 9 777 1903 375309369 375308250 0.000000e+00 1725
2 TraesCS5B01G263600 chr5D 83.594 512 55 19 1 506 375310013 375309525 9.940000e-124 453
3 TraesCS5B01G263600 chr5D 83.191 470 51 6 1904 2360 375308189 375307735 2.820000e-109 405
4 TraesCS5B01G263600 chr5A 92.568 1184 60 12 725 1904 476666836 476665677 0.000000e+00 1674
5 TraesCS5B01G263600 chr5A 89.912 684 50 10 1 677 476667505 476666834 0.000000e+00 863
6 TraesCS5B01G263600 chr5A 85.474 475 47 10 1904 2360 476665616 476665146 2.120000e-130 475
7 TraesCS5B01G263600 chr7A 91.566 166 12 2 1160 1325 222360989 222361152 6.560000e-56 228
8 TraesCS5B01G263600 chr7B 89.444 180 14 4 1176 1351 191904434 191904256 3.050000e-54 222


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G263600 chr5B 448127964 448130323 2359 True 4359 4359 100.000 1 2360 1 chr5B.!!$R1 2359
1 TraesCS5B01G263600 chr5D 375307735 375310013 2278 True 861 1725 87.070 1 2360 3 chr5D.!!$R1 2359
2 TraesCS5B01G263600 chr5A 476665146 476667505 2359 True 1004 1674 89.318 1 2360 3 chr5A.!!$R1 2359

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
140 141 1.678101 GCTGTGGCAGTTTGAAAGAGT 59.322 47.619 0.0 0.0 38.54 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1655 1666 0.248743 CGGTCCTAATTACGCTCGCA 60.249 55.0 0.0 0.0 0.0 5.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.445096 TGAATTCAAGACTGTAAAGCTGATTCA 59.555 33.333 5.45 0.00 0.00 2.57
106 107 6.062095 CCTTCCACCTAAAATGGACGAATAT 58.938 40.000 0.00 0.00 46.09 1.28
112 113 6.912591 CACCTAAAATGGACGAATATTGAAGC 59.087 38.462 0.00 0.00 0.00 3.86
126 127 7.502120 AATATTGAAGCTTAGTATGCTGTGG 57.498 36.000 11.03 0.00 41.03 4.17
140 141 1.678101 GCTGTGGCAGTTTGAAAGAGT 59.322 47.619 0.00 0.00 38.54 3.24
145 146 4.402155 TGTGGCAGTTTGAAAGAGTTGATT 59.598 37.500 0.00 0.00 0.00 2.57
149 150 8.296713 GTGGCAGTTTGAAAGAGTTGATTAATA 58.703 33.333 0.00 0.00 0.00 0.98
150 151 8.296713 TGGCAGTTTGAAAGAGTTGATTAATAC 58.703 33.333 0.00 0.00 0.00 1.89
162 163 8.082242 AGAGTTGATTAATACCTTGTGTTTTGC 58.918 33.333 0.00 0.00 0.00 3.68
172 177 5.122519 ACCTTGTGTTTTGCCCTATTTTTG 58.877 37.500 0.00 0.00 0.00 2.44
187 192 7.469181 GCCCTATTTTTGTCATACTCCAGAATG 60.469 40.741 0.00 0.00 0.00 2.67
201 206 5.072872 ACTCCAGAATGATTTCTCCCCTATG 59.927 44.000 0.00 0.00 40.28 2.23
210 215 4.396357 TTTCTCCCCTATGAAAAGCCAA 57.604 40.909 0.00 0.00 30.41 4.52
268 273 5.458891 TGTGAGCGTAGAAGTTTCTAGAAC 58.541 41.667 4.18 0.89 40.23 3.01
353 358 6.216569 TGTTGCACAGTAGTTTTTGTTGAAA 58.783 32.000 0.00 0.00 0.00 2.69
378 383 8.816640 AAAATATGGCCAGCTTTATTAAATCG 57.183 30.769 13.05 0.00 0.00 3.34
543 552 9.725206 TTTTTGGAGAGGGTAGAACTATAGTAT 57.275 33.333 5.65 0.71 0.00 2.12
546 555 7.691213 TGGAGAGGGTAGAACTATAGTATCTG 58.309 42.308 19.45 0.00 0.00 2.90
561 570 2.751166 ATCTGAGTGAACAACCCGAG 57.249 50.000 0.00 0.00 0.00 4.63
655 664 5.688807 TCATTTGGAGAGGGAATTCTCATC 58.311 41.667 8.33 5.08 44.34 2.92
656 665 5.431073 TCATTTGGAGAGGGAATTCTCATCT 59.569 40.000 8.33 9.22 44.34 2.90
657 666 5.786121 TTTGGAGAGGGAATTCTCATCTT 57.214 39.130 8.33 0.00 44.34 2.40
658 667 5.786121 TTGGAGAGGGAATTCTCATCTTT 57.214 39.130 8.33 0.00 44.34 2.52
659 668 5.786121 TGGAGAGGGAATTCTCATCTTTT 57.214 39.130 8.33 0.00 44.34 2.27
660 669 6.144845 TGGAGAGGGAATTCTCATCTTTTT 57.855 37.500 8.33 0.00 44.34 1.94
945 955 2.890474 CAAATCGGCGACCCCTCG 60.890 66.667 13.76 0.00 43.28 4.63
1392 1402 1.994463 CCCCAGGTCTTCCTCCAAG 59.006 63.158 0.00 0.00 43.07 3.61
1400 1410 1.483004 GTCTTCCTCCAAGCCTAGGTC 59.517 57.143 11.31 2.66 34.30 3.85
1480 1490 0.401738 ATATTGATGGGACCTGGGCG 59.598 55.000 0.00 0.00 0.00 6.13
1540 1550 9.749340 AAATTTATCTGATGATGATGGCAGATA 57.251 29.630 0.00 0.00 43.97 1.98
1554 1564 2.157668 GGCAGATACCGTATGCATTTCG 59.842 50.000 3.54 10.67 46.75 3.46
1567 1577 2.282701 CATTTCGAAATGCCCTGTGG 57.717 50.000 31.60 11.23 39.29 4.17
1574 1584 2.017668 AAATGCCCTGTGGTGTCCCA 62.018 55.000 0.00 0.00 38.87 4.37
1577 1587 2.200337 GCCCTGTGGTGTCCCAAAC 61.200 63.158 0.00 0.00 44.15 2.93
1584 1595 3.099905 TGTGGTGTCCCAAACATTTTGA 58.900 40.909 0.09 0.00 44.15 2.69
1589 1600 6.430283 TGGTGTCCCAAACATTTTGAAATGC 61.430 40.000 14.59 0.34 42.67 3.56
1634 1645 7.782644 TGTGTATCCCTTATTTATTTCCTTGGG 59.217 37.037 0.00 0.00 34.98 4.12
1638 1649 5.602145 TCCCTTATTTATTTCCTTGGGCATG 59.398 40.000 0.00 0.00 33.77 4.06
1673 1684 1.930567 TTGCGAGCGTAATTAGGACC 58.069 50.000 9.31 0.00 0.00 4.46
1678 1689 2.724690 CGAGCGTAATTAGGACCGATTG 59.275 50.000 9.31 0.00 0.00 2.67
1693 1704 3.833070 ACCGATTGTACCTGTCTCTCTTT 59.167 43.478 0.00 0.00 0.00 2.52
1794 1805 7.196331 AGAACTTACAAGTGATGTTTGCTTTC 58.804 34.615 0.00 0.00 43.63 2.62
1797 1808 2.034558 ACAAGTGATGTTTGCTTTCGGG 59.965 45.455 0.00 0.00 40.06 5.14
1798 1809 1.247567 AGTGATGTTTGCTTTCGGGG 58.752 50.000 0.00 0.00 0.00 5.73
1820 1831 1.475930 GGCTTGGGTATTGCCTCTCTC 60.476 57.143 0.00 0.00 43.05 3.20
1821 1832 1.488393 GCTTGGGTATTGCCTCTCTCT 59.512 52.381 0.00 0.00 37.43 3.10
1839 1851 9.236006 CCTCTCTCTTTTTCTTTTCCAATGATA 57.764 33.333 0.00 0.00 0.00 2.15
1855 1867 6.156775 TCCAATGATAAGTGGACATTCTCTCA 59.843 38.462 0.00 0.00 39.04 3.27
1876 1888 5.543714 TCAATAGAAGAAAGGTTACACGCA 58.456 37.500 0.00 0.00 0.00 5.24
1879 1891 4.749245 AGAAGAAAGGTTACACGCAATG 57.251 40.909 0.00 0.00 0.00 2.82
1913 1986 6.707608 CAGTAAATGATCAGGCTTAGCACATA 59.292 38.462 6.53 0.00 0.00 2.29
1925 1998 4.631813 GCTTAGCACATACTGTAAGCTTGT 59.368 41.667 9.86 0.59 36.84 3.16
1926 1999 5.122396 GCTTAGCACATACTGTAAGCTTGTT 59.878 40.000 9.86 0.00 36.84 2.83
1971 2044 7.742556 AAAATATGAACAATTGGTTGGGTTG 57.257 32.000 10.83 0.00 40.63 3.77
1988 2061 3.751698 GGGTTGGTGTGATTGAAGTAGAC 59.248 47.826 0.00 0.00 0.00 2.59
1990 2063 4.452455 GGTTGGTGTGATTGAAGTAGACTG 59.548 45.833 0.00 0.00 0.00 3.51
1997 2070 7.126398 GTGTGATTGAAGTAGACTGTTGTTTC 58.874 38.462 0.00 0.00 0.00 2.78
1998 2071 7.011482 GTGTGATTGAAGTAGACTGTTGTTTCT 59.989 37.037 0.00 0.00 0.00 2.52
2052 2127 9.268268 TGTTGTGTAACTCAGAGTTAAAATAGG 57.732 33.333 22.29 0.00 41.80 2.57
2066 2141 8.788325 AGTTAAAATAGGTACCATGAACAGTC 57.212 34.615 15.94 0.00 0.00 3.51
2068 2143 9.174166 GTTAAAATAGGTACCATGAACAGTCAT 57.826 33.333 15.94 0.00 45.80 3.06
2079 2154 4.492791 TGAACAGTCATGCACTTGAATG 57.507 40.909 14.42 14.42 44.86 2.67
2091 2166 3.057033 GCACTTGAATGTTGCTGATCCTT 60.057 43.478 0.00 0.00 0.00 3.36
2092 2167 4.156556 GCACTTGAATGTTGCTGATCCTTA 59.843 41.667 0.00 0.00 0.00 2.69
2122 2198 7.555554 GGATGTATGATCCCATCTATTTCTTGG 59.444 40.741 13.57 0.00 38.02 3.61
2125 2201 4.722220 TGATCCCATCTATTTCTTGGCAG 58.278 43.478 0.00 0.00 0.00 4.85
2135 2211 1.818959 TTCTTGGCAGCATGGTTGGC 61.819 55.000 11.92 11.92 41.12 4.52
2151 2227 0.525761 TGGCGGTAAAATTGCTCTGC 59.474 50.000 0.00 0.00 0.00 4.26
2154 2230 2.253603 GCGGTAAAATTGCTCTGCTTG 58.746 47.619 0.00 0.00 0.00 4.01
2176 2252 7.633116 GCTTGTTGGATTAGTAGCTAGTTAGGT 60.633 40.741 6.36 0.00 37.80 3.08
2195 2273 5.365021 AGGTGTGATAGAAAATCAGGAGG 57.635 43.478 0.00 0.00 0.00 4.30
2218 2308 9.425577 GAGGTATATCTACTGCAGTTATTTTCC 57.574 37.037 27.06 18.61 0.00 3.13
2247 2338 7.492669 TCTGTTCATACTTTGCAGAGCTTATAC 59.507 37.037 3.74 0.00 33.05 1.47
2272 2375 6.528014 TGCATTGATTTGTTTCATGTCAAC 57.472 33.333 0.00 0.00 32.30 3.18
2273 2376 6.282167 TGCATTGATTTGTTTCATGTCAACT 58.718 32.000 10.55 2.76 32.30 3.16
2274 2377 7.432059 TGCATTGATTTGTTTCATGTCAACTA 58.568 30.769 10.55 2.59 32.30 2.24
2275 2378 7.595875 TGCATTGATTTGTTTCATGTCAACTAG 59.404 33.333 10.55 0.00 32.30 2.57
2276 2379 7.411157 GCATTGATTTGTTTCATGTCAACTAGC 60.411 37.037 10.55 5.59 32.30 3.42
2277 2380 6.012658 TGATTTGTTTCATGTCAACTAGCC 57.987 37.500 10.55 2.61 0.00 3.93
2278 2381 5.769662 TGATTTGTTTCATGTCAACTAGCCT 59.230 36.000 10.55 0.00 0.00 4.58
2279 2382 6.939730 TGATTTGTTTCATGTCAACTAGCCTA 59.060 34.615 10.55 0.00 0.00 3.93
2280 2383 7.611467 TGATTTGTTTCATGTCAACTAGCCTAT 59.389 33.333 10.55 0.00 0.00 2.57
2281 2384 6.985188 TTGTTTCATGTCAACTAGCCTATC 57.015 37.500 10.55 0.00 0.00 2.08
2282 2385 6.048732 TGTTTCATGTCAACTAGCCTATCA 57.951 37.500 10.55 0.00 0.00 2.15
2283 2386 6.472016 TGTTTCATGTCAACTAGCCTATCAA 58.528 36.000 10.55 0.00 0.00 2.57
2286 2389 9.109393 GTTTCATGTCAACTAGCCTATCAATTA 57.891 33.333 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.741706 CGGCTCACATTGAATCAGCTT 59.258 47.619 0.00 0.00 0.00 3.74
40 41 1.538047 AGTGCAAATCGGCTCACATT 58.462 45.000 0.00 0.00 34.04 2.71
106 107 3.009723 GCCACAGCATACTAAGCTTCAA 58.990 45.455 0.00 0.00 41.14 2.69
126 127 8.515414 AGGTATTAATCAACTCTTTCAAACTGC 58.485 33.333 0.00 0.00 0.00 4.40
140 141 6.268847 AGGGCAAAACACAAGGTATTAATCAA 59.731 34.615 0.00 0.00 0.00 2.57
145 146 7.784470 AAATAGGGCAAAACACAAGGTATTA 57.216 32.000 0.00 0.00 0.00 0.98
149 150 5.122519 CAAAAATAGGGCAAAACACAAGGT 58.877 37.500 0.00 0.00 0.00 3.50
150 151 5.122519 ACAAAAATAGGGCAAAACACAAGG 58.877 37.500 0.00 0.00 0.00 3.61
162 163 7.775093 TCATTCTGGAGTATGACAAAAATAGGG 59.225 37.037 0.00 0.00 28.86 3.53
172 177 5.994668 GGGAGAAATCATTCTGGAGTATGAC 59.005 44.000 0.00 0.00 45.91 3.06
187 192 4.536765 TGGCTTTTCATAGGGGAGAAATC 58.463 43.478 0.00 0.00 34.10 2.17
201 206 5.003804 TCCATCTACTTGACTTGGCTTTTC 58.996 41.667 0.00 0.00 0.00 2.29
210 215 5.480073 GGATGATAGCTCCATCTACTTGACT 59.520 44.000 21.25 0.00 40.08 3.41
353 358 7.384932 GCGATTTAATAAAGCTGGCCATATTTT 59.615 33.333 17.62 14.79 0.00 1.82
364 369 3.060473 GCGAGTCGCGATTTAATAAAGCT 60.060 43.478 23.39 0.00 44.55 3.74
534 543 6.039493 CGGGTTGTTCACTCAGATACTATAGT 59.961 42.308 10.87 10.87 0.00 2.12
543 552 1.410004 ACTCGGGTTGTTCACTCAGA 58.590 50.000 0.00 0.00 0.00 3.27
546 555 4.062991 ACATTTACTCGGGTTGTTCACTC 58.937 43.478 0.00 0.00 0.00 3.51
758 767 9.741647 GGAACGTAGTAGTAGCAAGTAATATTT 57.258 33.333 0.00 0.00 45.00 1.40
774 783 1.176527 CCGGAGGTTGGAACGTAGTA 58.823 55.000 0.00 0.00 43.43 1.82
775 784 1.969862 CCGGAGGTTGGAACGTAGT 59.030 57.895 0.00 0.00 46.43 2.73
833 843 0.321122 GGCTGGACTTGGTCAGTGAG 60.321 60.000 0.00 0.00 35.01 3.51
834 844 1.754745 GGCTGGACTTGGTCAGTGA 59.245 57.895 0.00 0.00 35.01 3.41
945 955 1.686355 TTGGAGATCGGAGAGAGAGC 58.314 55.000 0.00 0.00 43.63 4.09
946 956 2.819608 GGATTGGAGATCGGAGAGAGAG 59.180 54.545 0.00 0.00 43.63 3.20
947 957 2.445145 AGGATTGGAGATCGGAGAGAGA 59.555 50.000 0.00 0.00 43.63 3.10
948 958 2.819608 GAGGATTGGAGATCGGAGAGAG 59.180 54.545 0.00 0.00 43.63 3.20
1392 1402 0.533032 AGAACAGAAGCGACCTAGGC 59.467 55.000 9.30 0.36 0.00 3.93
1400 1410 2.763249 AGCAAAACAGAACAGAAGCG 57.237 45.000 0.00 0.00 0.00 4.68
1554 1564 1.250840 GGGACACCACAGGGCATTTC 61.251 60.000 0.00 0.00 37.90 2.17
1566 1576 4.024133 GCATTTCAAAATGTTTGGGACACC 60.024 41.667 14.97 0.00 45.77 4.16
1567 1577 4.024133 GGCATTTCAAAATGTTTGGGACAC 60.024 41.667 14.97 0.00 45.77 3.67
1589 1600 4.456911 ACACAAGACAATACAATGCAGAGG 59.543 41.667 0.00 0.00 0.00 3.69
1593 1604 5.356751 GGGATACACAAGACAATACAATGCA 59.643 40.000 0.00 0.00 39.74 3.96
1604 1615 9.628500 AGGAAATAAATAAGGGATACACAAGAC 57.372 33.333 0.00 0.00 39.74 3.01
1655 1666 0.248743 CGGTCCTAATTACGCTCGCA 60.249 55.000 0.00 0.00 0.00 5.10
1657 1668 2.701073 ATCGGTCCTAATTACGCTCG 57.299 50.000 0.00 0.00 0.00 5.03
1673 1684 3.614616 GCAAAGAGAGACAGGTACAATCG 59.385 47.826 0.00 0.00 0.00 3.34
1678 1689 2.563179 TCAGGCAAAGAGAGACAGGTAC 59.437 50.000 0.00 0.00 0.00 3.34
1693 1704 2.030371 TGCAACAAGTCATTTCAGGCA 58.970 42.857 0.00 0.00 0.00 4.75
1797 1808 2.443952 GGCAATACCCAAGCCCCC 60.444 66.667 0.00 0.00 42.58 5.40
1813 1824 7.516198 TCATTGGAAAAGAAAAAGAGAGAGG 57.484 36.000 0.00 0.00 0.00 3.69
1820 1831 9.196552 GTCCACTTATCATTGGAAAAGAAAAAG 57.803 33.333 0.00 0.00 43.67 2.27
1821 1832 8.700051 TGTCCACTTATCATTGGAAAAGAAAAA 58.300 29.630 0.00 0.00 43.67 1.94
1839 1851 7.487822 TCTTCTATTGAGAGAATGTCCACTT 57.512 36.000 0.00 0.00 34.95 3.16
1855 1867 6.430000 ACATTGCGTGTAACCTTTCTTCTATT 59.570 34.615 0.00 0.00 39.91 1.73
1876 1888 8.950210 CCTGATCATTTACTGAAGTAACACATT 58.050 33.333 0.00 0.00 39.92 2.71
1879 1891 6.595716 AGCCTGATCATTTACTGAAGTAACAC 59.404 38.462 0.00 0.00 39.92 3.32
1913 1986 9.780186 AGTAGAAATAAAGAACAAGCTTACAGT 57.220 29.630 0.00 0.00 0.00 3.55
1942 2015 9.664332 CCCAACCAATTGTTCATATTTTATCAA 57.336 29.630 4.43 0.00 34.00 2.57
1962 2035 1.698506 TCAATCACACCAACCCAACC 58.301 50.000 0.00 0.00 0.00 3.77
1967 2040 4.452455 CAGTCTACTTCAATCACACCAACC 59.548 45.833 0.00 0.00 0.00 3.77
1971 2044 5.057149 ACAACAGTCTACTTCAATCACACC 58.943 41.667 0.00 0.00 0.00 4.16
1988 2061 6.884096 TTGCAACAAATGTAGAAACAACAG 57.116 33.333 0.00 0.00 39.58 3.16
1990 2063 8.174422 ACAATTTGCAACAAATGTAGAAACAAC 58.826 29.630 0.00 0.00 39.58 3.32
1997 2070 7.640616 TCATCACAATTTGCAACAAATGTAG 57.359 32.000 0.00 3.42 0.00 2.74
1998 2071 8.604640 ATTCATCACAATTTGCAACAAATGTA 57.395 26.923 0.00 0.00 0.00 2.29
2066 2141 3.291809 TCAGCAACATTCAAGTGCATG 57.708 42.857 0.00 0.00 0.00 4.06
2068 2143 2.229543 GGATCAGCAACATTCAAGTGCA 59.770 45.455 0.00 0.00 0.00 4.57
2069 2144 2.490903 AGGATCAGCAACATTCAAGTGC 59.509 45.455 0.00 0.00 0.00 4.40
2091 2166 9.566331 AAATAGATGGGATCATACATCCTTCTA 57.434 33.333 16.13 12.90 43.42 2.10
2092 2167 8.460317 AAATAGATGGGATCATACATCCTTCT 57.540 34.615 16.13 11.56 43.42 2.85
2104 2179 3.505293 GCTGCCAAGAAATAGATGGGATC 59.495 47.826 0.00 0.00 0.00 3.36
2122 2198 1.872197 TTTACCGCCAACCATGCTGC 61.872 55.000 0.00 0.00 0.00 5.25
2125 2201 1.999024 CAATTTTACCGCCAACCATGC 59.001 47.619 0.00 0.00 0.00 4.06
2135 2211 3.559238 ACAAGCAGAGCAATTTTACCG 57.441 42.857 0.00 0.00 0.00 4.02
2151 2227 7.707035 CACCTAACTAGCTACTAATCCAACAAG 59.293 40.741 0.00 0.00 0.00 3.16
2154 2230 6.979238 CACACCTAACTAGCTACTAATCCAAC 59.021 42.308 0.00 0.00 0.00 3.77
2176 2252 9.607333 AGATATACCTCCTGATTTTCTATCACA 57.393 33.333 0.00 0.00 0.00 3.58
2218 2308 5.180868 AGCTCTGCAAAGTATGAACAGAAAG 59.819 40.000 0.00 0.00 36.96 2.62
2222 2312 6.674694 ATAAGCTCTGCAAAGTATGAACAG 57.325 37.500 0.00 0.00 0.00 3.16
2234 2325 4.453751 TCAATGCATGTATAAGCTCTGCA 58.546 39.130 0.00 0.00 45.84 4.41
2247 2338 6.713792 TGACATGAAACAAATCAATGCATG 57.286 33.333 0.00 0.00 38.03 4.06
2272 2375 9.722056 GTTTGTGTTGAATAATTGATAGGCTAG 57.278 33.333 0.00 0.00 0.00 3.42
2273 2376 8.682710 GGTTTGTGTTGAATAATTGATAGGCTA 58.317 33.333 0.00 0.00 0.00 3.93
2274 2377 7.397192 AGGTTTGTGTTGAATAATTGATAGGCT 59.603 33.333 0.00 0.00 0.00 4.58
2275 2378 7.547227 AGGTTTGTGTTGAATAATTGATAGGC 58.453 34.615 0.00 0.00 0.00 3.93
2276 2379 9.573133 GAAGGTTTGTGTTGAATAATTGATAGG 57.427 33.333 0.00 0.00 0.00 2.57
2280 2383 9.126151 TGTAGAAGGTTTGTGTTGAATAATTGA 57.874 29.630 0.00 0.00 0.00 2.57
2281 2384 9.180678 GTGTAGAAGGTTTGTGTTGAATAATTG 57.819 33.333 0.00 0.00 0.00 2.32
2282 2385 8.908903 TGTGTAGAAGGTTTGTGTTGAATAATT 58.091 29.630 0.00 0.00 0.00 1.40
2283 2386 8.458573 TGTGTAGAAGGTTTGTGTTGAATAAT 57.541 30.769 0.00 0.00 0.00 1.28
2286 2389 6.735694 GCATGTGTAGAAGGTTTGTGTTGAAT 60.736 38.462 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.