>input_sequence_82703
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-------------------------------------------------ATGCGGGCGATCTCGTCGGCGGCGGGAGGGA
TGCTGCGGGCGCGGCTGCGCGCGGCGGTGCGCCTCCGCGGCGGGCACGGCGACGGCGGGGGCCGCTGGACGACGCCCGGC
CACGAGGTGCGGCCCAAGGGGTACCCGATGAACCGCACGCCGCCGCCGCCGGGCGAGTCGCGCAAGTGGGAGGACTGGGA
GCTCCCCTGCTACGTCACCTCCTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCACCCTCG
AGACCTGGGCGCACCACAAGGCGCTCGAGCGCCTCCAGCAGCAGGAGCTCGCCGCCGCCTCCGCCTCGGCCGACGCCCTG
TCCGAGTGA-----------------------------------------------------------------------
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>chr5B_1_TraesCS5B01G263600
CTGTGTTCTGTTCTTGAATTCAAGACTGTAAAGCTGATTCAATGTGAGCCGATTTGCACTTGTCAGTACTTGTTCAAGTG
AACCTTCCACCTAAAATGGACGAATATTGAAGCTTAGTATGCTGTGGCAGTTTGAAAGAGTTGATTAATACCTTGTGTTT
TGCCCTA----TTTTTGTCATACTCCAGAATGATTTCTCCCCTATGAAAAGCCAAGTCAAGTAGATGGAGCTATCATCCA
TTTTTCAGATGTGAGCGTAGAAGTTTCTAGAACTTTTTTTACTGATATATTGACAAAGGAATTTCTTATCAGTATTTGAG
ATTAACTAACATCTGTTGCACAGTAGTTTTTGTTGAAAAAATATGGCCAGCTTTATTAAATCGCGACTCGCAAAAGAACA
GCCGTAGTACCAAGGTG-AAGAGCCGACCAAAATCTAGGAAATAATTCACATGTGTAGCTATTTTTTATAAAACAATCTT
AAAGCATATTCTTGTGCATTTTTACATAT--AAAGTTCTTAATTTT-TTTGGAGAGGGTAGAACTATAGTATCTGAGTGA
ACAACCCGAGTAAATGTACTGTAGTAAATGACACACAAATCTAATATTGAAAAAACATATGCTTGAAGCACATTCACATC
TCATTTGGAGAGGGAATTCTCATCTTTTTTTTGGCAGTCCTTAGTTTTTTTTTCGGCAGTCCTTAGTGAAAATATTACTT
TTTTTTAGACAAAGTGAAAATATTACTTTTTTTTAGAAATAAGTGAAAATATTACTTGCTACTACTACGTTCCAACCTCC
GGCCCACTAAAGATCACCC-ACTTCTTCATAGCGTAGCCCAACTCACTGACCAAGTCCAGCCCACTTACACCACTCTCTG
CACTCTGCAGCGTCCACACCCCAGCCAGCCTCCTCGTCTCCGCAGATCAGCAGCCCCCAAATCGGCGACCCCTCGCTCTC
TCTCCGATCTCCAATCCTCCACCTCGCACACGCGCACCAACCGGGCACGATGCGGGCGATCTCGTCGGCGGCGGGAGGGA
TGCTGCGGGCGCGGCTGCGCGCGGCGGTGCGCCTCCGCGGCGGGCACGGCGACGGCGGGGGCCGCTGGACGACGCCCGGC
CACGAGGTGCGGCCCAAGGGGTACCCGATGAACCGCACGCCGCCGCCGCCGGGCGAGTCGCGCAAGTGGGAGGACTGGGA
GCTCCCCTGCTACGTCACCTCCTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCACCCTCG
AGACCTGGGCGCACCACAAGGCGCTCGAGCGCCTCCAGCAGCAGGAGCTCGCCGCCGCCTCCGCCTCGGCCGACGCCCTG
TCCGAGTGATCCGCGCGCGCGCGCCCCAGGTCTTCCTCCAAGCCTAGGTCGCTTCTGTTCTGTTTTGCTTCCAATAAGGG
TTGGTTGTGAACTTGTGATGTACCAATCTGATATTGATGGGACCTGGGCGGAACACTATATTTCTGTTTCTGTTTTGTTG
TTGAAATTTATCTGATGATGATGGCAGATACCGTATGCATTTCGAAATGCCCTGTGGTGTCCCAAAC-ATTTTGAAATGC
CTCTGCATTGTATTGTCTTGTGTATCCCTTATTTATTTCCTTGGGCATGATTTGCTACATGCTTTTGCGAGCGTAATTAG
GACCGATTGTACCTGTCTCTCTTTGCCTGAAATGACTTGTTGCAGAAAATAAATAAATCAGTTGTCGCATTGAACAGCTT
GAAATGTTGCTTGCTTGTTAGAACTTACAAGTGATGTTTGCTTTCGGGGGGGCTTGGGTATTGCCTCTCTCT-TTTTCTT
TTCCAATGATAAGTGGACATTCTCTCAATAGAAGAAAGGTTACACGCAATGTGTTACTTCAGTAAATGATCAGG------
-------------------------------------------------------CTTAGCACATACTGTAAGCTTGTTC
TTTATTTCTACTACTTGATAAAATATGAACAATTGGTTGGGTTGGTGTGATTGAAGTAGACTGTTGTTTCTACATTTGTT
GCAAATTGTGATGAATCATGTTGTGTAACTC--AGAGTTAAAATAGGTACCATGAACAGTCATGCACTTGAATGTTGCTG
ATCCTTAGAAGGATGTATGATCCCA-TCTATTTCTTGGCAGCATGGTTGGCGGTAAAATTGCTCTGCTTGTTGGATTAGT
AGCTAGTTAGGTGTGATAGAAAATCAGGA--GG------------TATATCTACTGCAGTTATTTTCCTTTCTG-TTCAT
ACTTTGCAGAGCTTATACATGCATTGATTTGTTTCATG------------TCAACTAGCCTATCAATTATTCAACACAAA
CCTTCTACACATGCACTATCACTACCAAGACACCATTAACTCTGAACAATAGTCTCTTCTTC
>chr5D_1
CTGTGTTCTGAGCTTGAATTCAAGACTGTAGAAGCTGAGTCATGTGAGCCGATTTGCACTTGTCAGTACTTGTTCAAGTG
AACCTTCCACCTAAAGTGGACGAATGATGAAGTTTAGTATGCTGTGACAGTTTGAGAGAGCTGATCAATGGCTTGTGTTT
TGTCCTATTAG--TTTTTCATACTCCAGAATCATTTCTCCCCTAACAAAAGCCAGGCCAAGTAGATGGAGCTATCATTCA
TTTTTCAGATTTGAGCGTAGAAGTTTCTAGAAGTTTTTG--CTGATATATTGACAAAAGAATGCCTTAGTATTTTTTTTT
GAGAGAATTTCATGTC--------AGTTTTTGTTTAAGAAATATGGCAGTCTTTATTAAATCACGACTTGCAAAAGTACA
GCTGCAGTAATTAAGTGAAAGAACCGACCAAAATCTAG-AAATAATTCACATAGCTATTA---------AAAAAAATCTT
AAAGCATATTCTCGTCTATATATATATATAACACATAGCTTTTCTTTTGGGGGGAATGAC--------------------
------------------------------ACACACATAGCTAATATTAAAAAA--ATATGCTTGAAACATATTCTCATC
TCATTTGGAGAGGAAATTCT-ATG----------------------TTTTTTTCGGCGGTCCCTTTTAGAACTAGTCCAT
ATTTCTTTGAAAATATACTCGCTAC--------------------------------------------TTCCAACCTCC
GGCCCACTAAAGATCACCCCACTTCTTCCTAGCATAGCCCAA--CACTGACCAAGTCCAGCCCACTTACACCACTCTCTG
CACTCTGCAGCGTCCACACCCCAGCCAGCCTCCTCGTCTCCGCAGATCAGCAGCCCCCAAATCGGCGACCCCTC----TC
TCTCCGATCTCCAATCC-CCACCTCGCACACGCGCACCAACCGGGCACGATGCGGGCGATCTCGTCGGCGGCGGGAGGGA
TGCTGCGGGCGCGGCTGAGCGCGGCGGCGCGCCTCCGCGGCGGGCACGGCGACGGCGGGGGCCGGTGGACGACGCCCGGC
CACGAGGTGCGGCCCAAGGGGTACCCGATGAACCGCACGCCGCCGCCGCCGGGCGAGTCGCGCAAGTGGGAGGACTGGGA
GCTCCCCTGCTACGTCACCTCCTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCACCCTCG
AGACCTGGGCGCACCACAAGGCGCTCGAGCGCCTCCAGCAGCAGGAGCTCTCCGCCGCCTCCGCCTCCGCCGAAGCCCTG
TCCGAGTGATCCGCGAGCGCGCGCCCCAGGTCTGCCTCCAAACCTAGGTTGCCTCTGTTCTGTTTTGCTTCCAATAAGGA
-TGGTTGTGAACTTGTGATGTACCAATCTGATATTGATGGGACCTGGGCTGAACACTATATTTCTGTTTCTGTTTTGTTG
TTGAAATTTATCTGATGATGATGGCAGATGCCGTATGCATTTCCAAATGCCCTGTCATGTCCCTAAACATTTTGGTTTGT
CTCGGCGTTGTATTATCTTGTGTATCCCTTATTTATTTCCTTGGTCATAATTTGCCACATGCTTTCGGGAGCGTAATTAG
TATTGATTATACCTGTCTCTCTTCGCCTGAAATGCCTTGTTGCAGAAAATAAATAAATCAGTTGTCGCATTGAACAGCTT
GAAATGTTGCTTGCTTGTTAGAACTTACAAGTGAACCTTGCTTTTGGA-GGGCTTAGGTATTGTCCCTCTGCCTTTTCTT
TTCCAATGATGAGTGGACATTCTCTCGATAGAAGAAAGGTTACACGCGATATGTTACTTCAGTAAATGATCAGGACCTAT
CTTTATAGAAGAGACAGATAAATAATATGTGTAGATTACTAAAT-AAATTTGAGTCTTGGCACGTGCTGGAAGCTTGGCC
TTTATTTCTACT---AGATAAAATATGAACAGCTTGTTGAGCTAATGTTATTAAAGTAGAGTATTGTTTGAACATTTGTT
GCAAATTGCGATGAACCATGTTGTGTAAATC--AGAGTTAAAATAGATATCATGAACAGTTACACACTTGAATTTCGCTG
ATCCTGTGAAGGATGTGTAATCCCATTATATTTCTGGACACCATGGTTGGTGGTAAATTTGCTCTGGTTATTGGATTAGG
AGCTAGTTAAGCGTGATAGAAAGTCAGGA--GAATAACTTTGCACTATATCTACTGCAGTTATTTTCTTTTTTG-TTCAT
ACTTCGCAGAGCTTATAAATGCATTGATTTGTTTCATG------------TCAA------------GTGTTCAACACAAA
CCTTCTACACATGCACTATCACTACCAAGACACCATTAACTCTGAACAATAGTATCTTCTTC
>chr5A_1
CTGTGTTCTGGGCTTGAATTCAAGACTGTAGAGCTGATTCG-TGTGAGCCGATTTGCACTTGTCAGTACTTATTCAAGTG
AACCTTCCACCTAAAATGGACGAATAATGAAGTTTAGTATGCTGT----GTTTGAAAGAGCTGATCAATGGCTTGTGTTT
TGTCCTATTTTTTTTTTTCATGCTTCAGAATCATTTCTCCCCTATCAAAAGCCAGGTCAAGTAGATGGAGCTATTATCCA
TTTTTCAGATGTGAGCGTAGAAGTTTCTAGAAGTTTTTG--CTGATATATTGACAAAGGAATTTCTTATCAGTATTTGAG
A-TTAACAACACATGTTGTACAATAGTTTT-GTGGAAGAAATAT-GCCGGCTTTATTAAATCATGACTCGCAAAAGAGCA
GCCGTAGTACCAAGGTG-AAGAGGCGACCAAAATCTAGGAGATAATTTACATATGTAGCTATTTTTTGTAAAACAATCTT
AAAGCATATTCTCGTACATTTTTACATATATAAAGTTCTTAAAAAAATTTGGAGAGGGTAGAGCTATAGTAACTAAGTGA
ACAACCCGACTAAATGTACTGTAGTAAATGGCACACAAATCTAATATTGAAAAA--ATATGCTTGAAGCATATTCACATC
TCATTTGGAGAGGGAATTCTCATA----------------------TTTTTTTCGGCAGTCCTTAGTGACAATATTACTT
TTTTTTGAGAGAAT---------------------------AGTGACAATATTACTTGCTACGG------TCCAACCTCC
GGCCCACTAAAGATCACCC-ACTTCTTCATAGTGTAGCCCAA--CACTGACCAAGTCCAGCCCACTTACACCACTCTCTG
CAGCGTG-AGCGTCCACACCCCAGCCAGCA---TCGTCTCCGCAGATCAGCAGCCCCCAAATCGGCGACCCCT------C
TCTCCGATCTCCAATCCTCCACCTCGCACACACGCACCAACCGGGCACGATGCGGGCGATCTCGTCGGCGGCGGGAGGGA
TGCTGCGGGCGCGGCTGAGCGCGGCGGCGCGCCTCCGCGGCGGGCACGGCGACGGCGGTGGCCGCTGGACGACGCCCGGC
CACGAGGTGCGGCCCAAGGGGTACCCGATGAACCGCACGCCGCCGCCGCCGGGCGAGTCGCGCAAGTGGGAGGACTGGGA
GCTCCCCTGCTACGTCACCTCCTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCACCCTCG
AGACCTGGGCGCACCACAAGGCGCTCGAGCGCCTCCAGCAGCAGGAGCTCGCCGCCGCGTCCGCCTCCGCCGACGCCCTG
TCAGAGTGATCCGCGCGCGGGCGCCCCAGGTCTTCCTCGAAACCTAGGTTGCTTCTGTTCTGTTTTGATTCCAATAAGGG
TTGGTTGTGAACTTGTGATGTACCAATCTGATATTGATGGGACCTGGGCTGAACATTATGTTTCTGTTTCTGTTTTGTTG
TTAAAATTTATCTGATGATGATGGCAGATGCCGTATACATTTCCAAATGCCCTGTCCCTA----AAATATTTTGGAATGT
CTCGGCATTGTATTATCTTGTGCGTCCCTTTTTTATTTCCTTGGTCATAATTTGCTACATGCTTTCGGGAGCGTAATTAG
GACTGATTATACCTGTCTCTCTTCGCCTGATATGACTTGTTGCAGAAAATGAATAAATCAGTTGTCGCATTGAACAGCTT
GAAATGTTGCTTGCTTGTTAGAACTTACAGGTGATGCTTGCTTTTAGA-GGGCTTGGGTATTGTCTCTCTTCCTTTTCTT
TTCCAATGATGAGTGGACACTCTGTCGATAGAAGAAAGGTTACACGTGATATGTTACTTCAGTAAATGATCAGGCCCTAT
CTTTATAAAAGATACAGGTAAATAGTATGTGTAGATTACTAAATGAAATTCGAGTCTTAGGATATGCTGTAAGCTTGGCC
TTTATTTCTACT---TGATAAAATATGAACAATTAGTTGAGTTTGTGTGATTGAAGTAGAGT-TTGTTTGAACATTTGTT
GCAAATTGTGATGAATCATTTTGTGTAACTCAAAGAGTTAAAATAGATACCATGAACAGTTGCACACTTGAATTTTGCTG
ATCCTGTGAAGGATGTATAACCCCATTCTATTTCTTGACACCATGGTTGGTGGTAAAATTGCTCTGGTTATTGGATTAGT
AGCTAGTTAGGCGTGATAGTAAAGTCAGCAGGAATAACTTTGCACTATGTCTACTATAGTTATTTTCTTTTTTTATTCAT
ACTTCCCAGAGCTTATAAATGCATTGATTTGTTTCATGTCAACTCGGCTATCAA------------TTGTTCAACACAAA
CCTTCCACACATGCACTATCACTATCAAGGCACTATTAACTCTGAACAGTAGTCCCTTCTTC
>SNPs
----------SS------------------S---------S---------------------------------------
--------------------------S-----S-------------S-------------S----S---SS---------
--S-------------S--------------S-------------S--------S-------------------------
--------------------------------S-----SSS---------------------------------------
-S---SS----SS-----S---S--------------S----------S-------------S-----------------
----------------------------------------------------S--------------S------------
------------S--S---------------------------S------------------S--------S--S-----
---------S--------------------------------------------SS--------------S---------
-----------------------SSSSSSSSSSSSSSSSSSSSSSS----------------------------------
------SSSS---SSS-SSSSS-SSSSSSSSSSSSSSSSSS-----S---------------SSSSSSS-----------
------------------------------------------SS------------------------------------
--------------------------------------------------------------------------SSSS--
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-----------------S---------S----------------------------------------------------
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-------------------------------------------------------------------S------------
-----------------------------------------S-------S------------------------------
-------------------------------------------------S------------------------------
-----------------------------S-------------S-----------SS------S--S-------S----S
---S----------S-----------------------------S---S----------------S-S------------
---S----S--------------S--------------------------------------------------------
------------------------------------S-------S--SS--------------S------SS--------
----------S---------------S--------------------S--S-----------------------------
-----------------------------------------------------------------S-----------SS-
------------SSS-------------------S----S---S----------------S-S------SS---------
----------------------------------------------S-------------S-SS---------S------
-----SS-----------S------------------S--S---------S---------------S--S----------
-----------S--------------------S----------------------------------S---S--------
----S------------S------------------------------------SSSSSSSSSSSS--S-----------
--------------------------------------------------------------
>forward_141
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----------------------------------------GCTGTGGCAGTTTGAAAGAGT-------------------
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>reverse_1666
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-----------------------------------------------------------------TGCGAGCGTAATTAG
GACCG---------------------------------------------------------------------------
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