Multiple sequence alignment - TraesCS5B01G261100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G261100 chr5B 100.000 3524 0 0 1 3524 445592885 445596408 0.000000e+00 6508.0
1 TraesCS5B01G261100 chr5B 94.611 167 8 1 1 166 696314851 696315017 1.260000e-64 257.0
2 TraesCS5B01G261100 chr5B 82.843 204 28 6 3102 3300 508816272 508816473 3.620000e-40 176.0
3 TraesCS5B01G261100 chr5B 82.673 202 30 4 3106 3303 428144053 428144253 1.300000e-39 174.0
4 TraesCS5B01G261100 chr5B 94.845 97 5 0 3310 3406 461613680 461613776 6.090000e-33 152.0
5 TraesCS5B01G261100 chr5B 89.552 67 6 1 1264 1330 691773526 691773461 2.250000e-12 84.2
6 TraesCS5B01G261100 chr5B 87.500 72 8 1 1264 1335 691798227 691798157 8.110000e-12 82.4
7 TraesCS5B01G261100 chr5B 88.136 59 7 0 1273 1331 691825096 691825038 1.760000e-08 71.3
8 TraesCS5B01G261100 chr5D 93.908 1264 44 13 1454 2703 373951693 373952937 0.000000e+00 1877.0
9 TraesCS5B01G261100 chr5D 90.583 1200 73 25 162 1336 373950305 373951489 0.000000e+00 1554.0
10 TraesCS5B01G261100 chr5D 85.895 553 64 10 2766 3312 373953142 373953686 8.480000e-161 577.0
11 TraesCS5B01G261100 chr5D 83.333 210 28 6 3102 3306 141426370 141426163 1.670000e-43 187.0
12 TraesCS5B01G261100 chr5D 89.831 59 6 0 1273 1331 547926052 547925994 3.770000e-10 76.8
13 TraesCS5B01G261100 chr5D 90.741 54 5 0 1273 1326 547840952 547840899 4.880000e-09 73.1
14 TraesCS5B01G261100 chr5A 89.039 1405 66 26 1359 2725 475750069 475751423 0.000000e+00 1661.0
15 TraesCS5B01G261100 chr5A 86.425 663 36 33 163 788 475748321 475748966 0.000000e+00 676.0
16 TraesCS5B01G261100 chr5A 83.212 548 53 25 790 1335 475749396 475749906 1.920000e-127 466.0
17 TraesCS5B01G261100 chr5A 92.899 169 11 1 1 168 662050888 662051056 9.770000e-61 244.0
18 TraesCS5B01G261100 chr5A 92.437 119 9 0 3406 3524 513962915 513962797 1.680000e-38 171.0
19 TraesCS5B01G261100 chr5A 79.333 150 27 4 2766 2914 232836426 232836280 6.220000e-18 102.0
20 TraesCS5B01G261100 chr5A 78.261 138 26 4 2776 2911 584430756 584430891 6.270000e-13 86.1
21 TraesCS5B01G261100 chr3D 93.064 173 10 2 1 172 416666162 416666333 5.840000e-63 252.0
22 TraesCS5B01G261100 chr3D 92.814 167 11 1 1 166 359589209 359589375 1.260000e-59 241.0
23 TraesCS5B01G261100 chr3D 92.793 111 6 2 3299 3407 382104818 382104928 3.640000e-35 159.0
24 TraesCS5B01G261100 chr2B 94.012 167 9 1 1 166 742690212 742690378 5.840000e-63 252.0
25 TraesCS5B01G261100 chr2B 92.373 118 9 0 3406 3523 484122651 484122534 6.050000e-38 169.0
26 TraesCS5B01G261100 chr2B 94.118 102 5 1 3309 3409 549025614 549025513 1.690000e-33 154.0
27 TraesCS5B01G261100 chr4D 93.413 167 10 1 1 166 5827872 5828038 2.720000e-61 246.0
28 TraesCS5B01G261100 chr4D 94.410 161 8 1 7 166 36578009 36577849 2.720000e-61 246.0
29 TraesCS5B01G261100 chr4D 92.308 169 12 1 2 169 191833439 191833607 4.550000e-59 239.0
30 TraesCS5B01G261100 chr4D 82.353 204 32 3 3106 3306 67272700 67272902 1.300000e-39 174.0
31 TraesCS5B01G261100 chr4D 91.597 119 10 0 3406 3524 295427009 295426891 7.830000e-37 165.0
32 TraesCS5B01G261100 chr4D 91.597 119 10 0 3406 3524 301810947 301811065 7.830000e-37 165.0
33 TraesCS5B01G261100 chr4D 81.373 204 34 3 3106 3306 8134338 8134136 2.810000e-36 163.0
34 TraesCS5B01G261100 chr4D 91.509 106 7 2 3310 3414 230489638 230489534 1.020000e-30 145.0
35 TraesCS5B01G261100 chr3B 89.247 186 16 4 1 183 479875335 479875519 2.740000e-56 230.0
36 TraesCS5B01G261100 chr3B 92.308 117 9 0 3406 3522 814176201 814176317 2.180000e-37 167.0
37 TraesCS5B01G261100 chr6A 82.710 214 32 4 3103 3312 596591688 596591900 6.010000e-43 185.0
38 TraesCS5B01G261100 chr2D 94.118 119 7 0 3406 3524 372702679 372702797 7.770000e-42 182.0
39 TraesCS5B01G261100 chr2D 94.340 106 5 1 3307 3411 206685653 206685548 1.010000e-35 161.0
40 TraesCS5B01G261100 chr2D 91.071 112 8 2 3299 3410 532306007 532305898 2.190000e-32 150.0
41 TraesCS5B01G261100 chr2D 90.991 111 9 1 3300 3410 635784187 635784078 7.880000e-32 148.0
42 TraesCS5B01G261100 chr7D 82.843 204 31 3 3107 3306 623691723 623691520 2.790000e-41 180.0
43 TraesCS5B01G261100 chr7D 82.587 201 32 2 3106 3303 589450730 589450930 1.300000e-39 174.0
44 TraesCS5B01G261100 chr7D 81.863 204 33 3 3107 3306 623704469 623704266 6.050000e-38 169.0
45 TraesCS5B01G261100 chr7D 96.970 99 3 0 3310 3408 478082409 478082507 2.180000e-37 167.0
46 TraesCS5B01G261100 chr7D 95.146 103 5 0 3307 3409 60439695 60439593 2.810000e-36 163.0
47 TraesCS5B01G261100 chr7D 94.898 98 5 0 3310 3407 407716534 407716631 1.690000e-33 154.0
48 TraesCS5B01G261100 chr7D 76.712 219 38 9 2786 2998 351652371 351652160 3.720000e-20 110.0
49 TraesCS5B01G261100 chr7B 82.915 199 29 4 3106 3300 592178989 592179186 1.300000e-39 174.0
50 TraesCS5B01G261100 chr7B 92.373 118 9 0 3406 3523 87176303 87176186 6.050000e-38 169.0
51 TraesCS5B01G261100 chr7B 92.308 117 9 0 3406 3522 120724991 120724875 2.180000e-37 167.0
52 TraesCS5B01G261100 chr7B 94.231 104 6 0 3304 3407 159510596 159510699 3.640000e-35 159.0
53 TraesCS5B01G261100 chr1D 95.283 106 4 1 3306 3411 174151171 174151275 2.180000e-37 167.0
54 TraesCS5B01G261100 chr1D 96.970 99 3 0 3308 3406 279100854 279100952 2.180000e-37 167.0
55 TraesCS5B01G261100 chrUn 91.597 119 10 0 3406 3524 8039185 8039303 7.830000e-37 165.0
56 TraesCS5B01G261100 chrUn 96.040 101 4 0 3310 3410 305213132 305213232 7.830000e-37 165.0
57 TraesCS5B01G261100 chr2A 93.694 111 6 1 3300 3410 603084747 603084638 7.830000e-37 165.0
58 TraesCS5B01G261100 chr2A 89.831 59 5 1 2780 2838 672404135 672404192 1.360000e-09 75.0
59 TraesCS5B01G261100 chr7A 94.175 103 5 1 3305 3406 68887677 68887575 4.710000e-34 156.0
60 TraesCS5B01G261100 chr7A 91.071 112 6 4 3300 3409 365238157 365238266 7.880000e-32 148.0
61 TraesCS5B01G261100 chr6B 91.228 114 8 2 3307 3419 38619696 38619584 1.690000e-33 154.0
62 TraesCS5B01G261100 chr6B 84.247 146 21 2 2765 2909 156552301 156552445 1.320000e-29 141.0
63 TraesCS5B01G261100 chr1A 92.308 104 8 0 3310 3413 12578141 12578038 7.880000e-32 148.0
64 TraesCS5B01G261100 chr6D 92.784 97 7 0 3310 3406 87082314 87082410 1.320000e-29 141.0
65 TraesCS5B01G261100 chr6D 85.938 128 16 2 2784 2909 385637330 385637203 6.140000e-28 135.0
66 TraesCS5B01G261100 chr4A 89.552 67 7 0 1267 1333 618529546 618529480 6.270000e-13 86.1
67 TraesCS5B01G261100 chr4A 87.302 63 8 0 1273 1335 618418788 618418726 4.880000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G261100 chr5B 445592885 445596408 3523 False 6508.000000 6508 100.000000 1 3524 1 chr5B.!!$F2 3523
1 TraesCS5B01G261100 chr5D 373950305 373953686 3381 False 1336.000000 1877 90.128667 162 3312 3 chr5D.!!$F1 3150
2 TraesCS5B01G261100 chr5A 475748321 475751423 3102 False 934.333333 1661 86.225333 163 2725 3 chr5A.!!$F3 2562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
984 1455 0.107703 TTCATCGCTCCATTCGCCTT 60.108 50.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2977 3829 0.174162 GGAAATGCATTGCCGCTCTT 59.826 50.0 20.99 0.0 0.0 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.988815 ATTAAGTTATAGACTCATAGTGCTTGG 57.011 33.333 0.00 0.00 37.72 3.61
34 35 6.412362 AGTTATAGACTCATAGTGCTTGGG 57.588 41.667 0.00 0.00 31.20 4.12
35 36 6.136857 AGTTATAGACTCATAGTGCTTGGGA 58.863 40.000 0.00 0.00 31.20 4.37
36 37 4.946478 ATAGACTCATAGTGCTTGGGAC 57.054 45.455 0.00 0.00 0.00 4.46
37 38 2.540383 AGACTCATAGTGCTTGGGACA 58.460 47.619 0.00 0.00 0.00 4.02
38 39 3.110705 AGACTCATAGTGCTTGGGACAT 58.889 45.455 0.00 0.00 39.30 3.06
39 40 3.118482 AGACTCATAGTGCTTGGGACATG 60.118 47.826 0.00 0.00 39.30 3.21
40 41 2.573462 ACTCATAGTGCTTGGGACATGT 59.427 45.455 0.00 0.00 39.30 3.21
41 42 2.941064 CTCATAGTGCTTGGGACATGTG 59.059 50.000 1.15 0.00 39.30 3.21
42 43 2.571202 TCATAGTGCTTGGGACATGTGA 59.429 45.455 1.15 0.00 39.30 3.58
43 44 3.200605 TCATAGTGCTTGGGACATGTGAT 59.799 43.478 1.15 0.00 39.30 3.06
44 45 1.830279 AGTGCTTGGGACATGTGATG 58.170 50.000 1.15 0.00 39.30 3.07
46 47 1.888512 GTGCTTGGGACATGTGATGTT 59.111 47.619 1.15 0.00 45.03 2.71
47 48 3.081061 GTGCTTGGGACATGTGATGTTA 58.919 45.455 1.15 0.00 45.03 2.41
48 49 3.081061 TGCTTGGGACATGTGATGTTAC 58.919 45.455 1.15 0.00 45.03 2.50
49 50 2.095853 GCTTGGGACATGTGATGTTACG 59.904 50.000 1.15 0.00 45.03 3.18
50 51 2.394930 TGGGACATGTGATGTTACGG 57.605 50.000 1.15 0.00 45.03 4.02
51 52 1.626321 TGGGACATGTGATGTTACGGT 59.374 47.619 1.15 0.00 45.03 4.83
52 53 2.832733 TGGGACATGTGATGTTACGGTA 59.167 45.455 1.15 0.00 45.03 4.02
53 54 3.261137 TGGGACATGTGATGTTACGGTAA 59.739 43.478 1.15 0.00 45.03 2.85
54 55 3.619929 GGGACATGTGATGTTACGGTAAC 59.380 47.826 21.20 21.20 45.03 2.50
55 56 4.501071 GGACATGTGATGTTACGGTAACT 58.499 43.478 26.22 14.93 45.03 2.24
56 57 5.394443 GGGACATGTGATGTTACGGTAACTA 60.394 44.000 26.22 15.81 45.03 2.24
57 58 5.747197 GGACATGTGATGTTACGGTAACTAG 59.253 44.000 26.22 13.26 45.03 2.57
58 59 5.107133 ACATGTGATGTTACGGTAACTAGC 58.893 41.667 26.22 17.49 41.63 3.42
59 60 5.105473 ACATGTGATGTTACGGTAACTAGCT 60.105 40.000 26.22 12.20 41.63 3.32
60 61 6.095860 ACATGTGATGTTACGGTAACTAGCTA 59.904 38.462 26.22 10.63 41.63 3.32
61 62 6.513806 TGTGATGTTACGGTAACTAGCTAA 57.486 37.500 26.22 10.00 39.38 3.09
62 63 6.558009 TGTGATGTTACGGTAACTAGCTAAG 58.442 40.000 26.22 0.00 39.38 2.18
63 64 6.151648 TGTGATGTTACGGTAACTAGCTAAGT 59.848 38.462 26.22 7.27 41.49 2.24
65 66 8.184192 GTGATGTTACGGTAACTAGCTAAGTTA 58.816 37.037 26.22 7.50 46.85 2.24
98 99 9.195411 CTATCTCTCTTCTCATTAACTCATTGC 57.805 37.037 0.00 0.00 0.00 3.56
99 100 6.344500 TCTCTCTTCTCATTAACTCATTGCC 58.656 40.000 0.00 0.00 0.00 4.52
100 101 6.053632 TCTCTTCTCATTAACTCATTGCCA 57.946 37.500 0.00 0.00 0.00 4.92
101 102 5.877012 TCTCTTCTCATTAACTCATTGCCAC 59.123 40.000 0.00 0.00 0.00 5.01
102 103 5.559770 TCTTCTCATTAACTCATTGCCACA 58.440 37.500 0.00 0.00 0.00 4.17
103 104 6.182627 TCTTCTCATTAACTCATTGCCACAT 58.817 36.000 0.00 0.00 0.00 3.21
104 105 7.337938 TCTTCTCATTAACTCATTGCCACATA 58.662 34.615 0.00 0.00 0.00 2.29
105 106 7.828717 TCTTCTCATTAACTCATTGCCACATAA 59.171 33.333 0.00 0.00 0.00 1.90
106 107 7.558161 TCTCATTAACTCATTGCCACATAAG 57.442 36.000 0.00 0.00 0.00 1.73
107 108 6.038603 TCTCATTAACTCATTGCCACATAAGC 59.961 38.462 0.00 0.00 0.00 3.09
108 109 5.651576 TCATTAACTCATTGCCACATAAGCA 59.348 36.000 0.00 0.00 38.81 3.91
120 121 7.461182 TGCCACATAAGCAAATTTACTTAGT 57.539 32.000 14.59 10.46 37.28 2.24
121 122 7.891561 TGCCACATAAGCAAATTTACTTAGTT 58.108 30.769 14.59 3.65 37.28 2.24
122 123 7.812191 TGCCACATAAGCAAATTTACTTAGTTG 59.188 33.333 14.59 11.62 37.28 3.16
123 124 7.275560 GCCACATAAGCAAATTTACTTAGTTGG 59.724 37.037 22.78 22.78 37.32 3.77
124 125 8.519526 CCACATAAGCAAATTTACTTAGTTGGA 58.480 33.333 22.73 4.17 36.86 3.53
125 126 9.341899 CACATAAGCAAATTTACTTAGTTGGAC 57.658 33.333 14.59 0.00 32.20 4.02
126 127 9.297037 ACATAAGCAAATTTACTTAGTTGGACT 57.703 29.630 14.59 0.00 32.20 3.85
129 130 7.817418 AGCAAATTTACTTAGTTGGACTTGA 57.183 32.000 0.00 0.00 0.00 3.02
130 131 8.409358 AGCAAATTTACTTAGTTGGACTTGAT 57.591 30.769 0.00 0.00 0.00 2.57
131 132 8.299570 AGCAAATTTACTTAGTTGGACTTGATG 58.700 33.333 0.00 0.00 0.00 3.07
132 133 8.082242 GCAAATTTACTTAGTTGGACTTGATGT 58.918 33.333 0.00 0.00 0.00 3.06
133 134 9.965824 CAAATTTACTTAGTTGGACTTGATGTT 57.034 29.630 0.00 0.00 0.00 2.71
137 138 8.827177 TTACTTAGTTGGACTTGATGTTACTG 57.173 34.615 0.00 0.00 0.00 2.74
138 139 5.701290 ACTTAGTTGGACTTGATGTTACTGC 59.299 40.000 0.00 0.00 0.00 4.40
139 140 4.357918 AGTTGGACTTGATGTTACTGCT 57.642 40.909 0.00 0.00 0.00 4.24
140 141 4.067896 AGTTGGACTTGATGTTACTGCTG 58.932 43.478 0.00 0.00 0.00 4.41
141 142 4.065088 GTTGGACTTGATGTTACTGCTGA 58.935 43.478 0.00 0.00 0.00 4.26
142 143 4.350368 TGGACTTGATGTTACTGCTGAA 57.650 40.909 0.00 0.00 0.00 3.02
143 144 4.713553 TGGACTTGATGTTACTGCTGAAA 58.286 39.130 0.00 0.00 0.00 2.69
144 145 5.316167 TGGACTTGATGTTACTGCTGAAAT 58.684 37.500 0.00 0.00 0.00 2.17
145 146 5.769662 TGGACTTGATGTTACTGCTGAAATT 59.230 36.000 0.00 0.00 0.00 1.82
146 147 6.939730 TGGACTTGATGTTACTGCTGAAATTA 59.060 34.615 0.00 0.00 0.00 1.40
147 148 7.094805 TGGACTTGATGTTACTGCTGAAATTAC 60.095 37.037 0.00 0.00 0.00 1.89
148 149 7.119846 GGACTTGATGTTACTGCTGAAATTACT 59.880 37.037 0.00 0.00 0.00 2.24
149 150 8.034058 ACTTGATGTTACTGCTGAAATTACTC 57.966 34.615 0.00 0.00 0.00 2.59
150 151 6.985188 TGATGTTACTGCTGAAATTACTCC 57.015 37.500 0.00 0.00 0.00 3.85
151 152 5.880332 TGATGTTACTGCTGAAATTACTCCC 59.120 40.000 0.00 0.00 0.00 4.30
152 153 5.235850 TGTTACTGCTGAAATTACTCCCA 57.764 39.130 0.00 0.00 0.00 4.37
153 154 5.001232 TGTTACTGCTGAAATTACTCCCAC 58.999 41.667 0.00 0.00 0.00 4.61
154 155 3.073274 ACTGCTGAAATTACTCCCACC 57.927 47.619 0.00 0.00 0.00 4.61
155 156 2.009774 CTGCTGAAATTACTCCCACCG 58.990 52.381 0.00 0.00 0.00 4.94
156 157 1.349688 TGCTGAAATTACTCCCACCGT 59.650 47.619 0.00 0.00 0.00 4.83
157 158 1.737793 GCTGAAATTACTCCCACCGTG 59.262 52.381 0.00 0.00 0.00 4.94
158 159 2.356135 CTGAAATTACTCCCACCGTGG 58.644 52.381 10.95 10.95 37.25 4.94
159 160 1.092348 GAAATTACTCCCACCGTGGC 58.908 55.000 12.54 0.00 35.79 5.01
160 161 0.696501 AAATTACTCCCACCGTGGCT 59.303 50.000 12.54 0.00 35.79 4.75
244 247 6.264292 TCAGCCAGTTAGTTTAGCAATCAAAA 59.736 34.615 0.00 0.00 0.00 2.44
299 302 3.056891 ACAGAAGTTGTGGTTTTGTGTGG 60.057 43.478 4.87 0.00 38.99 4.17
300 303 3.192422 CAGAAGTTGTGGTTTTGTGTGGA 59.808 43.478 0.00 0.00 0.00 4.02
343 346 8.437575 AGTAAAAACTGGAATCTCCTCAAGTTA 58.562 33.333 0.00 0.00 37.46 2.24
532 554 0.389948 GTAACAGCGAGGTGACAGGG 60.390 60.000 9.41 0.00 0.00 4.45
536 558 4.767255 GCGAGGTGACAGGGCAGG 62.767 72.222 0.00 0.00 0.00 4.85
550 575 1.743394 GGGCAGGTAAGATCAAAACCG 59.257 52.381 0.00 0.00 38.37 4.44
552 577 1.743394 GCAGGTAAGATCAAAACCGGG 59.257 52.381 6.32 0.00 38.37 5.73
553 578 2.878526 GCAGGTAAGATCAAAACCGGGT 60.879 50.000 6.32 0.00 38.37 5.28
555 580 4.581868 CAGGTAAGATCAAAACCGGGTAA 58.418 43.478 6.32 0.00 38.37 2.85
556 581 4.393990 CAGGTAAGATCAAAACCGGGTAAC 59.606 45.833 6.32 0.00 38.37 2.50
731 766 2.434359 GGACGGACGGGCTCTTTG 60.434 66.667 0.00 0.00 0.00 2.77
732 767 2.342648 GACGGACGGGCTCTTTGT 59.657 61.111 0.00 0.00 0.00 2.83
734 769 0.175073 GACGGACGGGCTCTTTGTAT 59.825 55.000 0.00 0.00 0.00 2.29
735 770 0.175073 ACGGACGGGCTCTTTGTATC 59.825 55.000 0.00 0.00 0.00 2.24
829 1295 1.179814 AACTGTCGCTCTCCTTCGGT 61.180 55.000 0.00 0.00 0.00 4.69
866 1337 1.865340 GGTAACGGAATCAAGGCGATC 59.135 52.381 0.00 0.00 31.11 3.69
937 1408 5.220912 CGTCGTAGTACTTCCATATCCACAA 60.221 44.000 0.00 0.00 0.00 3.33
938 1409 6.514541 CGTCGTAGTACTTCCATATCCACAAT 60.515 42.308 0.00 0.00 0.00 2.71
947 1418 5.128033 TCCATATCCACAATTCCACACAT 57.872 39.130 0.00 0.00 0.00 3.21
950 1421 7.296856 TCCATATCCACAATTCCACACATATT 58.703 34.615 0.00 0.00 0.00 1.28
957 1428 6.194463 CACAATTCCACACATATTCATCGAC 58.806 40.000 0.00 0.00 0.00 4.20
958 1429 5.879777 ACAATTCCACACATATTCATCGACA 59.120 36.000 0.00 0.00 0.00 4.35
961 1432 4.826556 TCCACACATATTCATCGACACAA 58.173 39.130 0.00 0.00 0.00 3.33
962 1433 5.241662 TCCACACATATTCATCGACACAAA 58.758 37.500 0.00 0.00 0.00 2.83
964 1435 5.351189 CCACACATATTCATCGACACAAAGA 59.649 40.000 0.00 0.00 0.00 2.52
965 1436 6.037500 CCACACATATTCATCGACACAAAGAT 59.962 38.462 0.00 0.00 0.00 2.40
966 1437 7.414429 CCACACATATTCATCGACACAAAGATT 60.414 37.037 0.00 0.00 0.00 2.40
967 1438 7.637519 CACACATATTCATCGACACAAAGATTC 59.362 37.037 0.00 0.00 0.00 2.52
968 1439 7.334171 ACACATATTCATCGACACAAAGATTCA 59.666 33.333 0.00 0.00 0.00 2.57
969 1440 8.340443 CACATATTCATCGACACAAAGATTCAT 58.660 33.333 0.00 0.00 0.00 2.57
971 1442 5.454736 TTCATCGACACAAAGATTCATCG 57.545 39.130 0.00 0.00 0.00 3.84
972 1443 3.306973 TCATCGACACAAAGATTCATCGC 59.693 43.478 0.00 0.00 0.00 4.58
973 1444 2.959516 TCGACACAAAGATTCATCGCT 58.040 42.857 0.00 0.00 0.00 4.93
976 1447 3.002791 GACACAAAGATTCATCGCTCCA 58.997 45.455 0.00 0.00 0.00 3.86
977 1448 3.614092 ACACAAAGATTCATCGCTCCAT 58.386 40.909 0.00 0.00 0.00 3.41
978 1449 4.012374 ACACAAAGATTCATCGCTCCATT 58.988 39.130 0.00 0.00 0.00 3.16
979 1450 4.095483 ACACAAAGATTCATCGCTCCATTC 59.905 41.667 0.00 0.00 0.00 2.67
981 1452 1.506493 AGATTCATCGCTCCATTCGC 58.494 50.000 0.00 0.00 0.00 4.70
984 1455 0.107703 TTCATCGCTCCATTCGCCTT 60.108 50.000 0.00 0.00 0.00 4.35
997 1468 2.116125 GCCTTCCTTGCCTGGTGT 59.884 61.111 0.00 0.00 0.00 4.16
1225 1706 5.499047 GTTTGGAATCGTCGTTAATGGATC 58.501 41.667 0.00 0.00 0.00 3.36
1280 1761 3.411517 CCGGCTGGGTTCCCTGAT 61.412 66.667 17.05 0.00 0.00 2.90
1326 1807 2.426024 GTCACCTACATGCTCGAGGTAA 59.574 50.000 15.58 0.00 41.80 2.85
1336 1821 1.262683 GCTCGAGGTAAGCATGCATTC 59.737 52.381 21.98 5.63 39.61 2.67
1341 1964 4.067896 CGAGGTAAGCATGCATTCCTTAT 58.932 43.478 20.17 0.91 0.00 1.73
1346 1969 8.482852 AGGTAAGCATGCATTCCTTATTTAAT 57.517 30.769 21.98 0.00 0.00 1.40
1349 1972 9.971922 GTAAGCATGCATTCCTTATTTAATTCT 57.028 29.630 21.98 0.00 0.00 2.40
1369 1994 8.958119 AATTCTCATTATTAAGCTGTAACGGA 57.042 30.769 0.00 0.00 0.00 4.69
1385 2010 0.535102 CGGAAGTGGCACCTTTGACT 60.535 55.000 15.27 0.00 0.00 3.41
1402 2027 2.147958 GACTACCAAACATGCAACGGA 58.852 47.619 0.00 0.00 0.00 4.69
1403 2028 2.550606 GACTACCAAACATGCAACGGAA 59.449 45.455 0.00 0.00 0.00 4.30
1417 2042 1.278637 CGGAAAACAAGCGCGTTCT 59.721 52.632 8.43 0.00 0.00 3.01
1429 2054 1.531058 GCGCGTTCTGTTTGTCAAACT 60.531 47.619 24.94 0.00 41.90 2.66
1430 2055 2.780993 CGCGTTCTGTTTGTCAAACTT 58.219 42.857 24.94 0.00 41.90 2.66
1431 2056 3.786161 GCGCGTTCTGTTTGTCAAACTTA 60.786 43.478 24.94 12.88 41.90 2.24
1432 2057 4.336101 CGCGTTCTGTTTGTCAAACTTAA 58.664 39.130 24.94 17.08 41.90 1.85
1433 2058 4.967575 CGCGTTCTGTTTGTCAAACTTAAT 59.032 37.500 24.94 0.00 41.90 1.40
1434 2059 5.454232 CGCGTTCTGTTTGTCAAACTTAATT 59.546 36.000 24.94 0.00 41.90 1.40
1435 2060 6.557711 CGCGTTCTGTTTGTCAAACTTAATTG 60.558 38.462 24.94 16.35 41.90 2.32
1436 2061 6.627274 CGTTCTGTTTGTCAAACTTAATTGC 58.373 36.000 24.94 10.67 41.90 3.56
1437 2062 6.252441 CGTTCTGTTTGTCAAACTTAATTGCA 59.748 34.615 24.94 5.61 41.90 4.08
1438 2063 7.201393 CGTTCTGTTTGTCAAACTTAATTGCAA 60.201 33.333 24.94 0.00 41.90 4.08
1439 2064 7.518731 TCTGTTTGTCAAACTTAATTGCAAC 57.481 32.000 24.94 0.12 41.90 4.17
1440 2065 7.319646 TCTGTTTGTCAAACTTAATTGCAACT 58.680 30.769 24.94 0.00 41.90 3.16
1441 2066 7.816995 TCTGTTTGTCAAACTTAATTGCAACTT 59.183 29.630 24.94 0.05 41.90 2.66
1442 2067 8.316640 TGTTTGTCAAACTTAATTGCAACTTT 57.683 26.923 24.94 0.00 41.90 2.66
1443 2068 9.424319 TGTTTGTCAAACTTAATTGCAACTTTA 57.576 25.926 24.94 0.00 41.90 1.85
1444 2069 9.683651 GTTTGTCAAACTTAATTGCAACTTTAC 57.316 29.630 19.19 0.00 38.35 2.01
1445 2070 9.646427 TTTGTCAAACTTAATTGCAACTTTACT 57.354 25.926 0.00 0.00 31.15 2.24
1446 2071 8.627487 TGTCAAACTTAATTGCAACTTTACTG 57.373 30.769 0.00 0.00 0.00 2.74
1447 2072 7.221838 TGTCAAACTTAATTGCAACTTTACTGC 59.778 33.333 0.00 0.00 40.35 4.40
1524 2176 1.597461 GGTCCTGCTTTCGGTAGCT 59.403 57.895 10.32 0.00 41.76 3.32
1544 2196 1.621992 TGGCATCGATCTCTCCCTAC 58.378 55.000 0.00 0.00 0.00 3.18
1573 2225 2.672996 CCCCCTGTGCTTTCGTGG 60.673 66.667 0.00 0.00 0.00 4.94
1579 2231 1.197721 CCTGTGCTTTCGTGGAATGAC 59.802 52.381 0.00 0.00 0.00 3.06
1591 2243 4.151689 TCGTGGAATGACAACGAAATCTTC 59.848 41.667 0.00 0.00 0.00 2.87
1621 2275 6.687081 AGATAACTGAAAACCGTGTGAAAA 57.313 33.333 0.00 0.00 0.00 2.29
1623 2277 7.712797 AGATAACTGAAAACCGTGTGAAAATT 58.287 30.769 0.00 0.00 0.00 1.82
1624 2278 8.842280 AGATAACTGAAAACCGTGTGAAAATTA 58.158 29.630 0.00 0.00 0.00 1.40
1625 2279 9.113876 GATAACTGAAAACCGTGTGAAAATTAG 57.886 33.333 0.00 0.00 0.00 1.73
1632 2286 6.549912 AACCGTGTGAAAATTAGAAGTACC 57.450 37.500 0.00 0.00 0.00 3.34
1633 2287 5.613329 ACCGTGTGAAAATTAGAAGTACCA 58.387 37.500 0.00 0.00 0.00 3.25
1682 2341 1.339727 GCGGGGAGTAGATTTGTTGGT 60.340 52.381 0.00 0.00 0.00 3.67
1878 2541 3.059982 CTCTGGGTCAACCTCGCA 58.940 61.111 0.00 0.00 41.11 5.10
2139 2806 1.192428 GGACTCCGACCATGTACCTT 58.808 55.000 0.00 0.00 0.00 3.50
2490 3178 2.787249 CATTGGAAGTCGCAGGCG 59.213 61.111 7.46 7.46 36.95 5.52
2526 3214 3.693578 AGCTAGAGTACGTAGGGTGAAAC 59.306 47.826 0.00 0.00 0.00 2.78
2572 3260 0.162933 AACGTACTGTGCGCATTTCG 59.837 50.000 15.91 16.51 42.12 3.46
2647 3335 6.642540 TCAGTGATCGCTTTCATGTACATATC 59.357 38.462 8.32 6.79 0.00 1.63
2651 3339 4.377021 TCGCTTTCATGTACATATCCCAC 58.623 43.478 8.32 0.00 0.00 4.61
2743 3592 4.301628 CGTTCCTAAATACCACGGATACC 58.698 47.826 0.00 0.00 0.00 2.73
2745 3594 5.241506 CGTTCCTAAATACCACGGATACCTA 59.758 44.000 0.00 0.00 0.00 3.08
2746 3595 6.450545 GTTCCTAAATACCACGGATACCTAC 58.549 44.000 0.00 0.00 0.00 3.18
2747 3596 4.761739 TCCTAAATACCACGGATACCTACG 59.238 45.833 0.00 0.00 0.00 3.51
2748 3597 4.520492 CCTAAATACCACGGATACCTACGT 59.480 45.833 0.00 0.00 45.25 3.57
2749 3598 5.705441 CCTAAATACCACGGATACCTACGTA 59.295 44.000 0.00 0.00 42.04 3.57
2750 3599 6.375455 CCTAAATACCACGGATACCTACGTAT 59.625 42.308 0.00 0.00 42.04 3.06
2751 3600 7.552687 CCTAAATACCACGGATACCTACGTATA 59.447 40.741 0.00 0.00 42.04 1.47
2752 3601 6.992063 AATACCACGGATACCTACGTATAG 57.008 41.667 0.00 0.00 42.04 1.31
2814 3663 8.553459 AAAATTAGATGGATCATATGTCGGAC 57.447 34.615 1.90 0.00 0.00 4.79
2815 3664 7.487822 AATTAGATGGATCATATGTCGGACT 57.512 36.000 9.88 0.00 0.00 3.85
2822 3671 6.826668 TGGATCATATGTCGGACTGTATTTT 58.173 36.000 9.88 0.00 0.00 1.82
2840 3689 3.880047 TTTCTTCGTCACGGATACCAT 57.120 42.857 0.00 0.00 0.00 3.55
2841 3690 2.863401 TCTTCGTCACGGATACCATG 57.137 50.000 0.00 0.00 0.00 3.66
2842 3691 1.407618 TCTTCGTCACGGATACCATGG 59.592 52.381 11.19 11.19 0.00 3.66
2907 3757 5.598417 GCACCCAGGTTGATATCCTAAAATT 59.402 40.000 0.00 0.00 33.54 1.82
2911 3761 7.898636 ACCCAGGTTGATATCCTAAAATTTCAA 59.101 33.333 0.00 0.00 33.54 2.69
2912 3762 8.757877 CCCAGGTTGATATCCTAAAATTTCAAA 58.242 33.333 0.00 0.00 31.37 2.69
2968 3820 1.136305 CCGTACTCATACAGGGGTGTG 59.864 57.143 0.00 0.00 37.47 3.82
2969 3821 1.136305 CGTACTCATACAGGGGTGTGG 59.864 57.143 0.00 0.00 36.83 4.17
3038 3890 3.266772 TGAATGATAAAGTGGAGTGGCCT 59.733 43.478 3.32 0.00 37.63 5.19
3044 3896 1.062488 AAGTGGAGTGGCCTTCCTGT 61.062 55.000 22.33 10.60 37.63 4.00
3054 3906 2.170607 TGGCCTTCCTGTGAGCTATTAC 59.829 50.000 3.32 0.00 0.00 1.89
3074 3926 2.290641 ACGCTCAAGTTTGGCTTTACTG 59.709 45.455 0.00 0.00 34.69 2.74
3092 3944 1.482593 CTGAGAGGTGGGTGGACATAC 59.517 57.143 0.00 0.00 0.00 2.39
3108 3960 5.044772 TGGACATACTTATGGGCTTGGTTAA 60.045 40.000 1.43 0.00 38.00 2.01
3121 3973 4.622701 CTTGGTTAAAGCATCTACAGCC 57.377 45.455 0.00 0.00 0.00 4.85
3123 3975 2.235155 TGGTTAAAGCATCTACAGCCGA 59.765 45.455 0.00 0.00 0.00 5.54
3143 3995 3.004734 CGAACTTGGCAAATTCTGTCCTT 59.995 43.478 17.99 0.00 0.00 3.36
3149 4001 5.195001 TGGCAAATTCTGTCCTTAAACAC 57.805 39.130 0.00 0.00 0.00 3.32
3150 4002 4.892934 TGGCAAATTCTGTCCTTAAACACT 59.107 37.500 0.00 0.00 0.00 3.55
3186 4038 3.023949 GCATCCGAGGGCACTCACT 62.024 63.158 17.92 0.00 44.17 3.41
3187 4039 1.153489 CATCCGAGGGCACTCACTG 60.153 63.158 17.92 5.90 44.17 3.66
3195 4047 1.679311 GGCACTCACTGGTCATCCA 59.321 57.895 0.00 0.00 42.05 3.41
3204 4056 6.544931 CACTCACTGGTCATCCATCAAATAAT 59.455 38.462 0.00 0.00 43.43 1.28
3238 4090 3.431207 CCGGACACCTCAATTACCGTATT 60.431 47.826 0.00 0.00 38.92 1.89
3241 4093 5.180271 GGACACCTCAATTACCGTATTTCA 58.820 41.667 0.00 0.00 0.00 2.69
3242 4094 5.644636 GGACACCTCAATTACCGTATTTCAA 59.355 40.000 0.00 0.00 0.00 2.69
3269 4121 5.445939 CCATACAAACTCATGCAACTACGTC 60.446 44.000 0.00 0.00 0.00 4.34
3270 4122 3.462982 ACAAACTCATGCAACTACGTCA 58.537 40.909 0.00 0.00 0.00 4.35
3271 4123 3.247648 ACAAACTCATGCAACTACGTCAC 59.752 43.478 0.00 0.00 0.00 3.67
3277 4129 0.179097 TGCAACTACGTCACTGCACA 60.179 50.000 12.71 0.00 39.77 4.57
3278 4130 1.148310 GCAACTACGTCACTGCACAT 58.852 50.000 9.95 0.00 34.87 3.21
3303 4157 2.029623 TCCGGCTACTTCATCACTACC 58.970 52.381 0.00 0.00 0.00 3.18
3307 4161 4.250464 CGGCTACTTCATCACTACCAAAA 58.750 43.478 0.00 0.00 0.00 2.44
3308 4162 4.092968 CGGCTACTTCATCACTACCAAAAC 59.907 45.833 0.00 0.00 0.00 2.43
3309 4163 5.246307 GGCTACTTCATCACTACCAAAACT 58.754 41.667 0.00 0.00 0.00 2.66
3310 4164 6.403878 GGCTACTTCATCACTACCAAAACTA 58.596 40.000 0.00 0.00 0.00 2.24
3311 4165 6.313164 GGCTACTTCATCACTACCAAAACTAC 59.687 42.308 0.00 0.00 0.00 2.73
3312 4166 7.097834 GCTACTTCATCACTACCAAAACTACT 58.902 38.462 0.00 0.00 0.00 2.57
3313 4167 7.275999 GCTACTTCATCACTACCAAAACTACTC 59.724 40.741 0.00 0.00 0.00 2.59
3314 4168 6.465084 ACTTCATCACTACCAAAACTACTCC 58.535 40.000 0.00 0.00 0.00 3.85
3315 4169 5.416271 TCATCACTACCAAAACTACTCCC 57.584 43.478 0.00 0.00 0.00 4.30
3316 4170 5.091552 TCATCACTACCAAAACTACTCCCT 58.908 41.667 0.00 0.00 0.00 4.20
3317 4171 5.187186 TCATCACTACCAAAACTACTCCCTC 59.813 44.000 0.00 0.00 0.00 4.30
3318 4172 4.748701 TCACTACCAAAACTACTCCCTCT 58.251 43.478 0.00 0.00 0.00 3.69
3319 4173 5.895807 TCACTACCAAAACTACTCCCTCTA 58.104 41.667 0.00 0.00 0.00 2.43
3320 4174 6.500336 TCACTACCAAAACTACTCCCTCTAT 58.500 40.000 0.00 0.00 0.00 1.98
3321 4175 6.958192 TCACTACCAAAACTACTCCCTCTATT 59.042 38.462 0.00 0.00 0.00 1.73
3322 4176 7.456902 TCACTACCAAAACTACTCCCTCTATTT 59.543 37.037 0.00 0.00 0.00 1.40
3323 4177 7.764901 CACTACCAAAACTACTCCCTCTATTTC 59.235 40.741 0.00 0.00 0.00 2.17
3324 4178 6.697641 ACCAAAACTACTCCCTCTATTTCA 57.302 37.500 0.00 0.00 0.00 2.69
3325 4179 7.086685 ACCAAAACTACTCCCTCTATTTCAA 57.913 36.000 0.00 0.00 0.00 2.69
3326 4180 7.523415 ACCAAAACTACTCCCTCTATTTCAAA 58.477 34.615 0.00 0.00 0.00 2.69
3327 4181 8.002459 ACCAAAACTACTCCCTCTATTTCAAAA 58.998 33.333 0.00 0.00 0.00 2.44
3328 4182 9.025041 CCAAAACTACTCCCTCTATTTCAAAAT 57.975 33.333 0.00 0.00 0.00 1.82
3348 4202 9.778741 TCAAAATAGATGACTCAACTTTGTACT 57.221 29.630 0.00 0.00 0.00 2.73
3396 4250 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
3397 4251 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
3398 4252 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
3399 4253 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
3400 4254 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
3401 4255 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
3402 4256 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
3403 4257 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
3404 4258 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
3405 4259 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
3406 4260 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
3407 4261 1.719529 TTTGGAACGGAGGGAGTACA 58.280 50.000 0.00 0.00 0.00 2.90
3408 4262 1.946984 TTGGAACGGAGGGAGTACAT 58.053 50.000 0.00 0.00 0.00 2.29
3409 4263 1.191535 TGGAACGGAGGGAGTACATG 58.808 55.000 0.00 0.00 0.00 3.21
3410 4264 0.179081 GGAACGGAGGGAGTACATGC 60.179 60.000 0.00 0.00 0.00 4.06
3411 4265 0.179081 GAACGGAGGGAGTACATGCC 60.179 60.000 0.00 0.00 40.48 4.40
3412 4266 0.907704 AACGGAGGGAGTACATGCCA 60.908 55.000 0.00 0.00 43.31 4.92
3413 4267 0.691078 ACGGAGGGAGTACATGCCAT 60.691 55.000 0.00 0.00 43.31 4.40
3414 4268 0.034059 CGGAGGGAGTACATGCCATC 59.966 60.000 0.00 0.49 43.31 3.51
3415 4269 0.034059 GGAGGGAGTACATGCCATCG 59.966 60.000 0.00 0.00 43.31 3.84
3416 4270 0.034059 GAGGGAGTACATGCCATCGG 59.966 60.000 0.00 0.00 43.31 4.18
3417 4271 0.398522 AGGGAGTACATGCCATCGGA 60.399 55.000 0.00 0.00 43.31 4.55
3418 4272 0.249911 GGGAGTACATGCCATCGGAC 60.250 60.000 0.00 0.00 39.77 4.79
3419 4273 0.753262 GGAGTACATGCCATCGGACT 59.247 55.000 0.00 0.00 0.00 3.85
3420 4274 1.961394 GGAGTACATGCCATCGGACTA 59.039 52.381 0.00 0.00 0.00 2.59
3421 4275 2.563179 GGAGTACATGCCATCGGACTAT 59.437 50.000 0.00 0.00 0.00 2.12
3422 4276 3.367498 GGAGTACATGCCATCGGACTATC 60.367 52.174 0.00 0.00 0.00 2.08
3423 4277 3.230976 AGTACATGCCATCGGACTATCA 58.769 45.455 0.00 0.00 0.00 2.15
3424 4278 3.641436 AGTACATGCCATCGGACTATCAA 59.359 43.478 0.00 0.00 0.00 2.57
3425 4279 3.558931 ACATGCCATCGGACTATCAAA 57.441 42.857 0.00 0.00 0.00 2.69
3426 4280 3.884895 ACATGCCATCGGACTATCAAAA 58.115 40.909 0.00 0.00 0.00 2.44
3427 4281 4.464008 ACATGCCATCGGACTATCAAAAT 58.536 39.130 0.00 0.00 0.00 1.82
3428 4282 4.889409 ACATGCCATCGGACTATCAAAATT 59.111 37.500 0.00 0.00 0.00 1.82
3429 4283 5.360714 ACATGCCATCGGACTATCAAAATTT 59.639 36.000 0.00 0.00 0.00 1.82
3430 4284 5.247507 TGCCATCGGACTATCAAAATTTG 57.752 39.130 0.00 0.00 0.00 2.32
3431 4285 4.097741 TGCCATCGGACTATCAAAATTTGG 59.902 41.667 5.83 0.00 0.00 3.28
3432 4286 4.610945 CCATCGGACTATCAAAATTTGGC 58.389 43.478 5.83 0.00 0.00 4.52
3433 4287 4.499696 CCATCGGACTATCAAAATTTGGCC 60.500 45.833 5.83 0.00 0.00 5.36
3434 4288 3.963129 TCGGACTATCAAAATTTGGCCT 58.037 40.909 3.32 0.00 0.00 5.19
3435 4289 3.694072 TCGGACTATCAAAATTTGGCCTG 59.306 43.478 3.32 0.00 0.00 4.85
3436 4290 3.443681 CGGACTATCAAAATTTGGCCTGT 59.556 43.478 3.32 0.82 0.00 4.00
3437 4291 4.082245 CGGACTATCAAAATTTGGCCTGTT 60.082 41.667 3.32 0.00 0.00 3.16
3438 4292 5.410924 GGACTATCAAAATTTGGCCTGTTC 58.589 41.667 3.32 0.00 0.00 3.18
3439 4293 5.059404 ACTATCAAAATTTGGCCTGTTCG 57.941 39.130 3.32 0.00 0.00 3.95
3440 4294 4.764823 ACTATCAAAATTTGGCCTGTTCGA 59.235 37.500 3.32 0.00 0.00 3.71
3441 4295 3.363341 TCAAAATTTGGCCTGTTCGAC 57.637 42.857 3.32 0.00 0.00 4.20
3442 4296 2.955660 TCAAAATTTGGCCTGTTCGACT 59.044 40.909 3.32 0.00 0.00 4.18
3443 4297 4.138290 TCAAAATTTGGCCTGTTCGACTA 58.862 39.130 3.32 0.00 0.00 2.59
3444 4298 4.764823 TCAAAATTTGGCCTGTTCGACTAT 59.235 37.500 3.32 0.00 0.00 2.12
3445 4299 4.701956 AAATTTGGCCTGTTCGACTATG 57.298 40.909 3.32 0.00 0.00 2.23
3446 4300 2.107950 TTTGGCCTGTTCGACTATGG 57.892 50.000 3.32 0.00 0.00 2.74
3447 4301 0.981183 TTGGCCTGTTCGACTATGGT 59.019 50.000 3.32 0.00 0.00 3.55
3448 4302 0.249120 TGGCCTGTTCGACTATGGTG 59.751 55.000 3.32 0.00 0.00 4.17
3449 4303 0.462047 GGCCTGTTCGACTATGGTGG 60.462 60.000 0.00 0.00 0.00 4.61
3450 4304 0.535335 GCCTGTTCGACTATGGTGGA 59.465 55.000 0.00 0.00 0.00 4.02
3451 4305 1.471676 GCCTGTTCGACTATGGTGGAG 60.472 57.143 0.00 0.00 32.14 3.86
3452 4306 1.825474 CCTGTTCGACTATGGTGGAGT 59.175 52.381 0.00 0.00 32.14 3.85
3453 4307 2.233922 CCTGTTCGACTATGGTGGAGTT 59.766 50.000 0.00 0.00 32.14 3.01
3454 4308 3.512680 CTGTTCGACTATGGTGGAGTTC 58.487 50.000 0.00 0.00 32.14 3.01
3455 4309 2.894765 TGTTCGACTATGGTGGAGTTCA 59.105 45.455 0.00 0.00 32.14 3.18
3456 4310 3.513912 TGTTCGACTATGGTGGAGTTCAT 59.486 43.478 0.00 0.00 32.14 2.57
3457 4311 4.113354 GTTCGACTATGGTGGAGTTCATC 58.887 47.826 0.00 0.00 32.14 2.92
3466 4320 3.782042 GAGTTCATCCACGACCGC 58.218 61.111 0.00 0.00 0.00 5.68
3467 4321 1.810030 GAGTTCATCCACGACCGCC 60.810 63.158 0.00 0.00 0.00 6.13
3468 4322 2.818274 GTTCATCCACGACCGCCC 60.818 66.667 0.00 0.00 0.00 6.13
3469 4323 3.000819 TTCATCCACGACCGCCCT 61.001 61.111 0.00 0.00 0.00 5.19
3470 4324 2.589157 TTCATCCACGACCGCCCTT 61.589 57.895 0.00 0.00 0.00 3.95
3471 4325 2.796483 TTCATCCACGACCGCCCTTG 62.796 60.000 0.00 0.00 0.00 3.61
3472 4326 4.778143 ATCCACGACCGCCCTTGC 62.778 66.667 0.00 0.00 0.00 4.01
3497 4351 4.699522 GTCGCCCTTGCCGTCCTT 62.700 66.667 0.00 0.00 0.00 3.36
3498 4352 4.388499 TCGCCCTTGCCGTCCTTC 62.388 66.667 0.00 0.00 0.00 3.46
3499 4353 4.394712 CGCCCTTGCCGTCCTTCT 62.395 66.667 0.00 0.00 0.00 2.85
3500 4354 2.436824 GCCCTTGCCGTCCTTCTC 60.437 66.667 0.00 0.00 0.00 2.87
3501 4355 2.125512 CCCTTGCCGTCCTTCTCG 60.126 66.667 0.00 0.00 0.00 4.04
3502 4356 2.815647 CCTTGCCGTCCTTCTCGC 60.816 66.667 0.00 0.00 0.00 5.03
3503 4357 3.181967 CTTGCCGTCCTTCTCGCG 61.182 66.667 0.00 0.00 0.00 5.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.988815 CCAAGCACTATGAGTCTATAACTTAAT 57.011 33.333 0.00 0.00 38.74 1.40
8 9 8.421784 CCCAAGCACTATGAGTCTATAACTTAA 58.578 37.037 0.00 0.00 38.74 1.85
9 10 7.783119 TCCCAAGCACTATGAGTCTATAACTTA 59.217 37.037 0.00 0.00 38.74 2.24
10 11 6.611642 TCCCAAGCACTATGAGTCTATAACTT 59.388 38.462 0.00 0.00 38.74 2.66
11 12 6.041069 GTCCCAAGCACTATGAGTCTATAACT 59.959 42.308 0.00 0.00 42.42 2.24
12 13 6.183360 TGTCCCAAGCACTATGAGTCTATAAC 60.183 42.308 0.00 0.00 0.00 1.89
13 14 5.897250 TGTCCCAAGCACTATGAGTCTATAA 59.103 40.000 0.00 0.00 0.00 0.98
14 15 5.454966 TGTCCCAAGCACTATGAGTCTATA 58.545 41.667 0.00 0.00 0.00 1.31
15 16 4.290093 TGTCCCAAGCACTATGAGTCTAT 58.710 43.478 0.00 0.00 0.00 1.98
16 17 3.708451 TGTCCCAAGCACTATGAGTCTA 58.292 45.455 0.00 0.00 0.00 2.59
17 18 2.540383 TGTCCCAAGCACTATGAGTCT 58.460 47.619 0.00 0.00 0.00 3.24
18 19 3.201290 CATGTCCCAAGCACTATGAGTC 58.799 50.000 0.00 0.00 0.00 3.36
19 20 2.573462 ACATGTCCCAAGCACTATGAGT 59.427 45.455 0.00 0.00 0.00 3.41
20 21 2.941064 CACATGTCCCAAGCACTATGAG 59.059 50.000 0.00 0.00 0.00 2.90
21 22 2.571202 TCACATGTCCCAAGCACTATGA 59.429 45.455 0.00 0.00 0.00 2.15
22 23 2.989909 TCACATGTCCCAAGCACTATG 58.010 47.619 0.00 0.00 0.00 2.23
23 24 3.054139 ACATCACATGTCCCAAGCACTAT 60.054 43.478 0.00 0.00 39.92 2.12
24 25 2.305635 ACATCACATGTCCCAAGCACTA 59.694 45.455 0.00 0.00 39.92 2.74
25 26 1.074405 ACATCACATGTCCCAAGCACT 59.926 47.619 0.00 0.00 39.92 4.40
26 27 1.538047 ACATCACATGTCCCAAGCAC 58.462 50.000 0.00 0.00 39.92 4.40
27 28 2.291209 AACATCACATGTCCCAAGCA 57.709 45.000 0.00 0.00 44.07 3.91
28 29 2.095853 CGTAACATCACATGTCCCAAGC 59.904 50.000 0.00 0.00 44.07 4.01
29 30 2.677836 CCGTAACATCACATGTCCCAAG 59.322 50.000 0.00 0.00 44.07 3.61
30 31 2.039216 ACCGTAACATCACATGTCCCAA 59.961 45.455 0.00 0.00 44.07 4.12
31 32 1.626321 ACCGTAACATCACATGTCCCA 59.374 47.619 0.00 0.00 44.07 4.37
32 33 2.396590 ACCGTAACATCACATGTCCC 57.603 50.000 0.00 0.00 44.07 4.46
33 34 4.501071 AGTTACCGTAACATCACATGTCC 58.499 43.478 20.83 0.00 44.07 4.02
34 35 5.231568 GCTAGTTACCGTAACATCACATGTC 59.768 44.000 20.83 0.00 44.07 3.06
36 37 5.348986 AGCTAGTTACCGTAACATCACATG 58.651 41.667 20.83 0.00 41.07 3.21
37 38 5.593679 AGCTAGTTACCGTAACATCACAT 57.406 39.130 20.83 4.45 41.07 3.21
38 39 6.151648 ACTTAGCTAGTTACCGTAACATCACA 59.848 38.462 20.83 3.34 41.07 3.58
39 40 6.558909 ACTTAGCTAGTTACCGTAACATCAC 58.441 40.000 20.83 9.14 41.07 3.06
40 41 6.764308 ACTTAGCTAGTTACCGTAACATCA 57.236 37.500 20.83 7.08 41.07 3.07
72 73 9.195411 GCAATGAGTTAATGAGAAGAGAGATAG 57.805 37.037 0.00 0.00 0.00 2.08
73 74 8.147058 GGCAATGAGTTAATGAGAAGAGAGATA 58.853 37.037 0.00 0.00 0.00 1.98
74 75 6.991531 GGCAATGAGTTAATGAGAAGAGAGAT 59.008 38.462 0.00 0.00 0.00 2.75
75 76 6.070596 TGGCAATGAGTTAATGAGAAGAGAGA 60.071 38.462 0.00 0.00 0.00 3.10
76 77 6.036953 GTGGCAATGAGTTAATGAGAAGAGAG 59.963 42.308 0.00 0.00 0.00 3.20
77 78 5.877012 GTGGCAATGAGTTAATGAGAAGAGA 59.123 40.000 0.00 0.00 0.00 3.10
78 79 5.645067 TGTGGCAATGAGTTAATGAGAAGAG 59.355 40.000 0.00 0.00 0.00 2.85
79 80 5.559770 TGTGGCAATGAGTTAATGAGAAGA 58.440 37.500 0.00 0.00 0.00 2.87
80 81 5.885230 TGTGGCAATGAGTTAATGAGAAG 57.115 39.130 0.00 0.00 0.00 2.85
81 82 7.415541 GCTTATGTGGCAATGAGTTAATGAGAA 60.416 37.037 0.00 0.00 0.00 2.87
82 83 6.038603 GCTTATGTGGCAATGAGTTAATGAGA 59.961 38.462 0.00 0.00 0.00 3.27
83 84 6.183360 TGCTTATGTGGCAATGAGTTAATGAG 60.183 38.462 0.00 0.00 36.71 2.90
84 85 5.651576 TGCTTATGTGGCAATGAGTTAATGA 59.348 36.000 0.00 0.00 36.71 2.57
85 86 5.893687 TGCTTATGTGGCAATGAGTTAATG 58.106 37.500 0.00 0.00 36.71 1.90
86 87 6.528537 TTGCTTATGTGGCAATGAGTTAAT 57.471 33.333 0.00 0.00 43.50 1.40
87 88 5.973899 TTGCTTATGTGGCAATGAGTTAA 57.026 34.783 0.00 0.00 43.50 2.01
88 89 5.973899 TTTGCTTATGTGGCAATGAGTTA 57.026 34.783 2.01 0.00 46.81 2.24
89 90 4.870123 TTTGCTTATGTGGCAATGAGTT 57.130 36.364 2.01 0.00 46.81 3.01
90 91 5.410355 AATTTGCTTATGTGGCAATGAGT 57.590 34.783 2.01 0.00 46.81 3.41
91 92 7.037438 AGTAAATTTGCTTATGTGGCAATGAG 58.963 34.615 2.58 0.00 46.81 2.90
92 93 6.934056 AGTAAATTTGCTTATGTGGCAATGA 58.066 32.000 2.58 0.00 46.81 2.57
93 94 7.599630 AAGTAAATTTGCTTATGTGGCAATG 57.400 32.000 18.50 0.00 46.81 2.82
94 95 8.531146 ACTAAGTAAATTTGCTTATGTGGCAAT 58.469 29.630 23.51 2.88 46.81 3.56
95 96 7.891561 ACTAAGTAAATTTGCTTATGTGGCAA 58.108 30.769 23.51 6.48 46.12 4.52
96 97 7.461182 ACTAAGTAAATTTGCTTATGTGGCA 57.539 32.000 23.51 7.08 35.37 4.92
97 98 7.275560 CCAACTAAGTAAATTTGCTTATGTGGC 59.724 37.037 26.82 0.00 35.05 5.01
98 99 8.519526 TCCAACTAAGTAAATTTGCTTATGTGG 58.480 33.333 29.19 29.19 38.75 4.17
99 100 9.341899 GTCCAACTAAGTAAATTTGCTTATGTG 57.658 33.333 23.51 21.75 35.37 3.21
100 101 9.297037 AGTCCAACTAAGTAAATTTGCTTATGT 57.703 29.630 23.51 19.90 35.37 2.29
103 104 9.344772 TCAAGTCCAACTAAGTAAATTTGCTTA 57.655 29.630 22.37 22.37 34.85 3.09
104 105 8.232913 TCAAGTCCAACTAAGTAAATTTGCTT 57.767 30.769 22.52 22.52 36.98 3.91
105 106 7.817418 TCAAGTCCAACTAAGTAAATTTGCT 57.183 32.000 2.58 2.58 0.00 3.91
106 107 8.082242 ACATCAAGTCCAACTAAGTAAATTTGC 58.918 33.333 0.00 0.00 0.00 3.68
107 108 9.965824 AACATCAAGTCCAACTAAGTAAATTTG 57.034 29.630 0.00 0.00 0.00 2.32
111 112 9.268268 CAGTAACATCAAGTCCAACTAAGTAAA 57.732 33.333 0.00 0.00 0.00 2.01
112 113 7.386848 GCAGTAACATCAAGTCCAACTAAGTAA 59.613 37.037 0.00 0.00 0.00 2.24
113 114 6.872020 GCAGTAACATCAAGTCCAACTAAGTA 59.128 38.462 0.00 0.00 0.00 2.24
114 115 5.701290 GCAGTAACATCAAGTCCAACTAAGT 59.299 40.000 0.00 0.00 0.00 2.24
115 116 5.934625 AGCAGTAACATCAAGTCCAACTAAG 59.065 40.000 0.00 0.00 0.00 2.18
116 117 5.700832 CAGCAGTAACATCAAGTCCAACTAA 59.299 40.000 0.00 0.00 0.00 2.24
117 118 5.011635 TCAGCAGTAACATCAAGTCCAACTA 59.988 40.000 0.00 0.00 0.00 2.24
118 119 4.067896 CAGCAGTAACATCAAGTCCAACT 58.932 43.478 0.00 0.00 0.00 3.16
119 120 4.065088 TCAGCAGTAACATCAAGTCCAAC 58.935 43.478 0.00 0.00 0.00 3.77
120 121 4.350368 TCAGCAGTAACATCAAGTCCAA 57.650 40.909 0.00 0.00 0.00 3.53
121 122 4.350368 TTCAGCAGTAACATCAAGTCCA 57.650 40.909 0.00 0.00 0.00 4.02
122 123 5.886960 ATTTCAGCAGTAACATCAAGTCC 57.113 39.130 0.00 0.00 0.00 3.85
123 124 8.034058 AGTAATTTCAGCAGTAACATCAAGTC 57.966 34.615 0.00 0.00 0.00 3.01
124 125 7.119846 GGAGTAATTTCAGCAGTAACATCAAGT 59.880 37.037 0.00 0.00 0.00 3.16
125 126 7.414540 GGGAGTAATTTCAGCAGTAACATCAAG 60.415 40.741 0.00 0.00 0.00 3.02
126 127 6.374333 GGGAGTAATTTCAGCAGTAACATCAA 59.626 38.462 0.00 0.00 0.00 2.57
127 128 5.880332 GGGAGTAATTTCAGCAGTAACATCA 59.120 40.000 0.00 0.00 0.00 3.07
128 129 5.880332 TGGGAGTAATTTCAGCAGTAACATC 59.120 40.000 0.00 0.00 0.00 3.06
129 130 5.648092 GTGGGAGTAATTTCAGCAGTAACAT 59.352 40.000 0.00 0.00 0.00 2.71
130 131 5.001232 GTGGGAGTAATTTCAGCAGTAACA 58.999 41.667 0.00 0.00 0.00 2.41
131 132 4.395231 GGTGGGAGTAATTTCAGCAGTAAC 59.605 45.833 0.00 0.00 0.00 2.50
132 133 4.585879 GGTGGGAGTAATTTCAGCAGTAA 58.414 43.478 0.00 0.00 0.00 2.24
133 134 3.369052 CGGTGGGAGTAATTTCAGCAGTA 60.369 47.826 0.00 0.00 0.00 2.74
134 135 2.615493 CGGTGGGAGTAATTTCAGCAGT 60.615 50.000 0.00 0.00 0.00 4.40
135 136 2.009774 CGGTGGGAGTAATTTCAGCAG 58.990 52.381 0.00 0.00 0.00 4.24
136 137 1.349688 ACGGTGGGAGTAATTTCAGCA 59.650 47.619 0.00 0.00 0.00 4.41
137 138 1.737793 CACGGTGGGAGTAATTTCAGC 59.262 52.381 0.00 0.00 0.00 4.26
138 139 2.356135 CCACGGTGGGAGTAATTTCAG 58.644 52.381 19.63 0.00 32.67 3.02
139 140 1.612199 GCCACGGTGGGAGTAATTTCA 60.612 52.381 27.41 0.00 38.19 2.69
140 141 1.092348 GCCACGGTGGGAGTAATTTC 58.908 55.000 27.41 4.68 38.19 2.17
141 142 0.696501 AGCCACGGTGGGAGTAATTT 59.303 50.000 27.41 0.00 38.19 1.82
142 143 1.485066 CTAGCCACGGTGGGAGTAATT 59.515 52.381 27.41 0.00 38.19 1.40
143 144 1.120530 CTAGCCACGGTGGGAGTAAT 58.879 55.000 27.41 0.00 38.19 1.89
144 145 0.251922 ACTAGCCACGGTGGGAGTAA 60.252 55.000 27.41 0.00 38.19 2.24
145 146 0.682209 GACTAGCCACGGTGGGAGTA 60.682 60.000 27.41 4.65 38.19 2.59
146 147 1.982938 GACTAGCCACGGTGGGAGT 60.983 63.158 27.41 9.38 38.19 3.85
147 148 1.258445 AAGACTAGCCACGGTGGGAG 61.258 60.000 27.41 3.91 38.19 4.30
148 149 0.040058 TAAGACTAGCCACGGTGGGA 59.960 55.000 27.41 0.00 38.19 4.37
149 150 0.460311 CTAAGACTAGCCACGGTGGG 59.540 60.000 27.41 14.07 38.19 4.61
150 151 0.179108 GCTAAGACTAGCCACGGTGG 60.179 60.000 22.87 22.87 44.22 4.61
151 152 3.347411 GCTAAGACTAGCCACGGTG 57.653 57.895 0.00 0.00 44.22 4.94
244 247 7.523293 TTCACATAACATCTGAAACCACAAT 57.477 32.000 0.00 0.00 0.00 2.71
275 278 4.987912 CACACAAAACCACAACTTCTGTTT 59.012 37.500 0.00 0.00 35.47 2.83
276 279 4.555262 CACACAAAACCACAACTTCTGTT 58.445 39.130 0.00 0.00 35.47 3.16
335 338 7.436673 CGGGAGATATTTTCTGAGTAACTTGAG 59.563 40.741 0.00 0.00 33.74 3.02
336 339 7.093465 ACGGGAGATATTTTCTGAGTAACTTGA 60.093 37.037 0.00 0.00 33.74 3.02
343 346 4.712337 AGTGACGGGAGATATTTTCTGAGT 59.288 41.667 0.00 0.00 33.74 3.41
507 523 3.257375 TGTCACCTCGCTGTTACAGTATT 59.743 43.478 14.23 0.00 33.43 1.89
508 524 2.823747 TGTCACCTCGCTGTTACAGTAT 59.176 45.455 14.23 0.00 33.43 2.12
509 525 2.228103 CTGTCACCTCGCTGTTACAGTA 59.772 50.000 14.23 2.06 36.29 2.74
511 527 1.670087 CCTGTCACCTCGCTGTTACAG 60.670 57.143 8.18 8.18 39.22 2.74
512 528 0.317160 CCTGTCACCTCGCTGTTACA 59.683 55.000 0.00 0.00 0.00 2.41
532 554 1.743394 CCCGGTTTTGATCTTACCTGC 59.257 52.381 0.00 0.00 0.00 4.85
536 558 4.325972 TGGTTACCCGGTTTTGATCTTAC 58.674 43.478 0.00 0.00 0.00 2.34
550 575 2.222027 GTCAGCAGCATATGGTTACCC 58.778 52.381 4.25 0.00 37.60 3.69
552 577 1.261619 GCGTCAGCAGCATATGGTTAC 59.738 52.381 4.25 0.45 44.35 2.50
553 578 1.581934 GCGTCAGCAGCATATGGTTA 58.418 50.000 4.25 0.00 44.35 2.85
555 580 1.884464 CGCGTCAGCAGCATATGGT 60.884 57.895 0.40 0.40 45.49 3.55
556 581 1.592400 TCGCGTCAGCAGCATATGG 60.592 57.895 5.77 0.00 45.49 2.74
557 582 1.561730 GTCGCGTCAGCAGCATATG 59.438 57.895 5.77 0.00 45.49 1.78
558 583 1.946156 CGTCGCGTCAGCAGCATAT 60.946 57.895 5.77 0.00 45.49 1.78
559 584 2.579518 CGTCGCGTCAGCAGCATA 60.580 61.111 5.77 0.00 45.49 3.14
788 823 1.421646 CTCCCTCCTCTCTCTCTCTCC 59.578 61.905 0.00 0.00 0.00 3.71
789 824 1.421646 CCTCCCTCCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
829 1295 2.590645 CTCCTCTCGTCTCCGGGA 59.409 66.667 0.00 0.00 42.49 5.14
937 1408 5.427378 TGTGTCGATGAATATGTGTGGAAT 58.573 37.500 0.00 0.00 0.00 3.01
938 1409 4.826556 TGTGTCGATGAATATGTGTGGAA 58.173 39.130 0.00 0.00 0.00 3.53
947 1418 6.292328 GCGATGAATCTTTGTGTCGATGAATA 60.292 38.462 0.00 0.00 0.00 1.75
950 1421 3.306973 GCGATGAATCTTTGTGTCGATGA 59.693 43.478 0.00 0.00 0.00 2.92
957 1428 4.595116 GAATGGAGCGATGAATCTTTGTG 58.405 43.478 0.00 0.00 0.00 3.33
958 1429 3.310774 CGAATGGAGCGATGAATCTTTGT 59.689 43.478 0.00 0.00 0.00 2.83
961 1432 1.869767 GCGAATGGAGCGATGAATCTT 59.130 47.619 0.00 0.00 0.00 2.40
962 1433 1.506493 GCGAATGGAGCGATGAATCT 58.494 50.000 0.00 0.00 0.00 2.40
964 1435 0.107456 AGGCGAATGGAGCGATGAAT 59.893 50.000 0.00 0.00 35.00 2.57
965 1436 0.107703 AAGGCGAATGGAGCGATGAA 60.108 50.000 0.00 0.00 35.00 2.57
966 1437 0.530650 GAAGGCGAATGGAGCGATGA 60.531 55.000 0.00 0.00 35.00 2.92
967 1438 1.502163 GGAAGGCGAATGGAGCGATG 61.502 60.000 0.00 0.00 35.00 3.84
968 1439 1.227674 GGAAGGCGAATGGAGCGAT 60.228 57.895 0.00 0.00 35.00 4.58
969 1440 1.899437 AAGGAAGGCGAATGGAGCGA 61.899 55.000 0.00 0.00 35.00 4.93
971 1442 1.997928 GCAAGGAAGGCGAATGGAGC 61.998 60.000 0.00 0.00 0.00 4.70
972 1443 1.379642 GGCAAGGAAGGCGAATGGAG 61.380 60.000 0.00 0.00 0.00 3.86
973 1444 1.378514 GGCAAGGAAGGCGAATGGA 60.379 57.895 0.00 0.00 0.00 3.41
976 1447 1.379044 CCAGGCAAGGAAGGCGAAT 60.379 57.895 0.00 0.00 39.37 3.34
977 1448 2.034066 CCAGGCAAGGAAGGCGAA 59.966 61.111 0.00 0.00 39.37 4.70
978 1449 3.249189 ACCAGGCAAGGAAGGCGA 61.249 61.111 2.81 0.00 39.37 5.54
979 1450 3.058160 CACCAGGCAAGGAAGGCG 61.058 66.667 2.81 0.00 39.37 5.52
981 1452 0.984230 TAGACACCAGGCAAGGAAGG 59.016 55.000 2.81 0.00 0.00 3.46
984 1455 1.555075 GACATAGACACCAGGCAAGGA 59.445 52.381 2.81 0.00 0.00 3.36
997 1468 3.130516 GTCACCTCCATTGTCGACATAGA 59.869 47.826 20.80 14.83 0.00 1.98
1037 1515 3.706373 GCGCCAGGAACCTCCTCA 61.706 66.667 0.00 0.00 45.66 3.86
1225 1706 2.493278 AGCAAATTCGGACAAGGAATGG 59.507 45.455 0.00 0.00 34.50 3.16
1280 1761 2.933287 AAGCCCCGGTGTGGATGA 60.933 61.111 0.00 0.00 42.00 2.92
1326 1807 8.241497 TGAGAATTAAATAAGGAATGCATGCT 57.759 30.769 20.33 0.00 0.00 3.79
1346 1969 8.038944 ACTTCCGTTACAGCTTAATAATGAGAA 58.961 33.333 0.00 0.00 0.00 2.87
1349 1972 6.537301 CCACTTCCGTTACAGCTTAATAATGA 59.463 38.462 0.00 0.00 0.00 2.57
1357 1982 0.107831 TGCCACTTCCGTTACAGCTT 59.892 50.000 0.00 0.00 0.00 3.74
1369 1994 1.493022 TGGTAGTCAAAGGTGCCACTT 59.507 47.619 0.00 0.00 0.00 3.16
1385 2010 3.130516 TGTTTTCCGTTGCATGTTTGGTA 59.869 39.130 0.00 0.00 0.00 3.25
1402 2027 1.917303 CAAACAGAACGCGCTTGTTTT 59.083 42.857 24.41 10.51 31.34 2.43
1403 2028 1.135517 ACAAACAGAACGCGCTTGTTT 60.136 42.857 22.47 22.47 33.61 2.83
1417 2042 7.897575 AAGTTGCAATTAAGTTTGACAAACA 57.102 28.000 28.07 11.99 43.79 2.83
1494 2146 1.813859 CAGGACCCGCGTTCAGATA 59.186 57.895 4.92 0.00 0.00 1.98
1524 2176 1.964223 GTAGGGAGAGATCGATGCCAA 59.036 52.381 0.54 0.00 0.00 4.52
1544 2196 3.327404 AGGGGGTGGTTGGCGTAG 61.327 66.667 0.00 0.00 0.00 3.51
1591 2243 5.619607 CACGGTTTTCAGTTATCTTTGAACG 59.380 40.000 0.00 0.00 33.36 3.95
1594 2246 5.818336 TCACACGGTTTTCAGTTATCTTTGA 59.182 36.000 0.00 0.00 0.00 2.69
1621 2275 8.258708 GTGAACATTCCTACTGGTACTTCTAAT 58.741 37.037 0.00 0.00 34.23 1.73
1623 2277 6.127814 CGTGAACATTCCTACTGGTACTTCTA 60.128 42.308 0.00 0.00 34.23 2.10
1624 2278 5.336531 CGTGAACATTCCTACTGGTACTTCT 60.337 44.000 0.00 0.00 34.23 2.85
1625 2279 4.863131 CGTGAACATTCCTACTGGTACTTC 59.137 45.833 0.00 0.00 34.23 3.01
1632 2286 2.028476 TGTCCCGTGAACATTCCTACTG 60.028 50.000 0.00 0.00 0.00 2.74
1633 2287 2.253610 TGTCCCGTGAACATTCCTACT 58.746 47.619 0.00 0.00 0.00 2.57
1665 2319 4.393990 CGGTTAACCAACAAATCTACTCCC 59.606 45.833 24.14 0.00 36.29 4.30
1666 2320 4.142752 GCGGTTAACCAACAAATCTACTCC 60.143 45.833 24.14 0.00 36.29 3.85
1667 2321 4.142752 GGCGGTTAACCAACAAATCTACTC 60.143 45.833 24.14 0.00 36.29 2.59
1682 2341 1.675219 GTCAGGTCAGGGCGGTTAA 59.325 57.895 0.00 0.00 0.00 2.01
1878 2541 5.733620 ATGCTCACATTTTGTTCTTGGAT 57.266 34.783 0.00 0.00 30.07 3.41
2124 2791 1.933021 AGTCAAGGTACATGGTCGGA 58.067 50.000 0.00 0.00 0.00 4.55
2139 2806 4.980805 GGGCGCACCGTGAAGTCA 62.981 66.667 10.83 0.00 36.48 3.41
2526 3214 3.891366 ACAGTTTGTCCTCCCATTCTTTG 59.109 43.478 0.00 0.00 0.00 2.77
2647 3335 7.494625 CAGTATACTGTACCTTTATGTTGTGGG 59.505 40.741 22.48 0.00 39.09 4.61
2703 3391 2.617658 ACGGAGGGAGGAGTAGTTTTT 58.382 47.619 0.00 0.00 0.00 1.94
2713 3562 2.367894 GGTATTTAGGAACGGAGGGAGG 59.632 54.545 0.00 0.00 0.00 4.30
2790 3639 7.821359 CAGTCCGACATATGATCCATCTAATTT 59.179 37.037 10.38 0.00 0.00 1.82
2791 3640 7.038729 ACAGTCCGACATATGATCCATCTAATT 60.039 37.037 10.38 0.00 0.00 1.40
2792 3641 6.438741 ACAGTCCGACATATGATCCATCTAAT 59.561 38.462 10.38 0.00 0.00 1.73
2794 3643 5.325239 ACAGTCCGACATATGATCCATCTA 58.675 41.667 10.38 0.00 0.00 1.98
2795 3644 4.155709 ACAGTCCGACATATGATCCATCT 58.844 43.478 10.38 0.00 0.00 2.90
2804 3653 6.570692 ACGAAGAAAATACAGTCCGACATAT 58.429 36.000 0.40 0.00 0.00 1.78
2814 3663 5.231568 GGTATCCGTGACGAAGAAAATACAG 59.768 44.000 6.54 0.00 0.00 2.74
2815 3664 5.104374 GGTATCCGTGACGAAGAAAATACA 58.896 41.667 6.54 0.00 0.00 2.29
2822 3671 1.407618 CCATGGTATCCGTGACGAAGA 59.592 52.381 6.54 0.00 42.73 2.87
2842 3691 3.577334 TTCGTGGGGAATGGGTGCC 62.577 63.158 0.00 0.00 36.87 5.01
2848 3697 2.415893 GCATTCACTTTCGTGGGGAATG 60.416 50.000 18.24 18.24 41.53 2.67
2854 3703 1.234615 ACCCGCATTCACTTTCGTGG 61.235 55.000 0.00 0.00 41.53 4.94
2950 3802 1.485066 CCCACACCCCTGTATGAGTAC 59.515 57.143 0.00 0.00 0.00 2.73
2968 3820 4.858680 GCCGCTCTTAGGTGCCCC 62.859 72.222 0.00 0.00 0.00 5.80
2969 3821 2.893682 ATTGCCGCTCTTAGGTGCCC 62.894 60.000 0.00 0.00 0.00 5.36
2975 3827 2.542411 GGAAATGCATTGCCGCTCTTAG 60.542 50.000 20.99 0.00 0.00 2.18
2977 3829 0.174162 GGAAATGCATTGCCGCTCTT 59.826 50.000 20.99 0.00 0.00 2.85
2983 3835 1.202114 TGAAGTCGGAAATGCATTGCC 59.798 47.619 24.91 24.91 31.68 4.52
3026 3878 1.462238 ACAGGAAGGCCACTCCACT 60.462 57.895 22.33 7.00 37.29 4.00
3027 3879 1.302832 CACAGGAAGGCCACTCCAC 60.303 63.158 22.33 0.78 37.29 4.02
3054 3906 2.548057 TCAGTAAAGCCAAACTTGAGCG 59.452 45.455 0.00 0.00 39.09 5.03
3062 3914 2.224769 CCCACCTCTCAGTAAAGCCAAA 60.225 50.000 0.00 0.00 0.00 3.28
3064 3916 0.984230 CCCACCTCTCAGTAAAGCCA 59.016 55.000 0.00 0.00 0.00 4.75
3065 3917 0.984995 ACCCACCTCTCAGTAAAGCC 59.015 55.000 0.00 0.00 0.00 4.35
3074 3926 1.867363 AGTATGTCCACCCACCTCTC 58.133 55.000 0.00 0.00 0.00 3.20
3108 3960 2.350522 CAAGTTCGGCTGTAGATGCTT 58.649 47.619 0.00 0.00 0.00 3.91
3121 3973 2.554032 AGGACAGAATTTGCCAAGTTCG 59.446 45.455 6.99 5.36 0.00 3.95
3123 3975 6.127196 TGTTTAAGGACAGAATTTGCCAAGTT 60.127 34.615 0.00 0.00 0.00 2.66
3135 3987 1.336517 CCGCGAGTGTTTAAGGACAGA 60.337 52.381 8.23 0.00 0.00 3.41
3136 3988 1.068474 CCGCGAGTGTTTAAGGACAG 58.932 55.000 8.23 0.00 0.00 3.51
3137 3989 0.675083 TCCGCGAGTGTTTAAGGACA 59.325 50.000 8.23 0.00 0.00 4.02
3139 3991 0.387622 CGTCCGCGAGTGTTTAAGGA 60.388 55.000 8.23 0.00 41.33 3.36
3161 4013 4.181010 CCCTCGGATGCACCAGGG 62.181 72.222 18.75 18.75 44.42 4.45
3167 4019 3.002583 TGAGTGCCCTCGGATGCA 61.003 61.111 0.00 0.00 40.85 3.96
3175 4027 1.557269 GGATGACCAGTGAGTGCCCT 61.557 60.000 0.00 0.00 35.97 5.19
3195 4047 3.569701 GGATGTGGACGCCATTATTTGAT 59.430 43.478 1.90 0.00 35.28 2.57
3238 4090 6.587206 TGCATGAGTTTGTATGGATTTGAA 57.413 33.333 0.00 0.00 0.00 2.69
3241 4093 6.594788 AGTTGCATGAGTTTGTATGGATTT 57.405 33.333 0.00 0.00 0.00 2.17
3242 4094 6.183360 CGTAGTTGCATGAGTTTGTATGGATT 60.183 38.462 0.00 0.00 0.00 3.01
3269 4121 1.490693 GCCGGACGATATGTGCAGTG 61.491 60.000 5.05 0.00 39.19 3.66
3270 4122 1.227263 GCCGGACGATATGTGCAGT 60.227 57.895 5.05 0.00 39.19 4.40
3271 4123 0.313987 TAGCCGGACGATATGTGCAG 59.686 55.000 5.05 0.00 39.19 4.41
3277 4129 3.057456 GTGATGAAGTAGCCGGACGATAT 60.057 47.826 5.05 0.00 0.00 1.63
3278 4130 2.292569 GTGATGAAGTAGCCGGACGATA 59.707 50.000 5.05 0.00 0.00 2.92
3322 4176 9.778741 AGTACAAAGTTGAGTCATCTATTTTGA 57.221 29.630 15.99 3.46 38.91 2.69
3370 4224 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
3371 4225 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
3372 4226 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
3373 4227 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
3374 4228 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
3375 4229 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
3376 4230 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
3377 4231 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
3378 4232 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
3379 4233 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
3380 4234 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
3381 4235 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
3382 4236 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
3383 4237 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
3384 4238 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
3385 4239 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
3386 4240 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
3387 4241 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
3388 4242 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
3389 4243 1.553248 CATGTACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
3390 4244 1.191535 CATGTACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
3391 4245 0.179081 GCATGTACTCCCTCCGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
3392 4246 0.179081 GGCATGTACTCCCTCCGTTC 60.179 60.000 0.00 0.00 0.00 3.95
3393 4247 0.907704 TGGCATGTACTCCCTCCGTT 60.908 55.000 0.00 0.00 0.00 4.44
3394 4248 0.691078 ATGGCATGTACTCCCTCCGT 60.691 55.000 0.00 0.00 0.00 4.69
3395 4249 0.034059 GATGGCATGTACTCCCTCCG 59.966 60.000 3.81 0.00 0.00 4.63
3396 4250 0.034059 CGATGGCATGTACTCCCTCC 59.966 60.000 3.81 0.00 0.00 4.30
3397 4251 0.034059 CCGATGGCATGTACTCCCTC 59.966 60.000 3.81 0.00 0.00 4.30
3398 4252 0.398522 TCCGATGGCATGTACTCCCT 60.399 55.000 3.81 0.00 0.00 4.20
3399 4253 0.249911 GTCCGATGGCATGTACTCCC 60.250 60.000 3.81 0.00 0.00 4.30
3400 4254 0.753262 AGTCCGATGGCATGTACTCC 59.247 55.000 3.81 0.00 0.00 3.85
3401 4255 3.255888 TGATAGTCCGATGGCATGTACTC 59.744 47.826 3.81 0.00 0.00 2.59
3402 4256 3.230976 TGATAGTCCGATGGCATGTACT 58.769 45.455 3.81 7.92 0.00 2.73
3403 4257 3.660501 TGATAGTCCGATGGCATGTAC 57.339 47.619 3.81 0.00 0.00 2.90
3404 4258 4.681074 TTTGATAGTCCGATGGCATGTA 57.319 40.909 3.81 0.00 0.00 2.29
3405 4259 3.558931 TTTGATAGTCCGATGGCATGT 57.441 42.857 3.81 0.00 0.00 3.21
3406 4260 5.443185 AATTTTGATAGTCCGATGGCATG 57.557 39.130 3.81 0.00 0.00 4.06
3407 4261 5.221303 CCAAATTTTGATAGTCCGATGGCAT 60.221 40.000 10.72 0.00 0.00 4.40
3408 4262 4.097741 CCAAATTTTGATAGTCCGATGGCA 59.902 41.667 10.72 0.00 0.00 4.92
3409 4263 4.610945 CCAAATTTTGATAGTCCGATGGC 58.389 43.478 10.72 0.00 0.00 4.40
3410 4264 4.499696 GGCCAAATTTTGATAGTCCGATGG 60.500 45.833 10.72 0.00 0.00 3.51
3411 4265 4.339247 AGGCCAAATTTTGATAGTCCGATG 59.661 41.667 5.01 0.00 0.00 3.84
3412 4266 4.339247 CAGGCCAAATTTTGATAGTCCGAT 59.661 41.667 5.01 0.00 0.00 4.18
3413 4267 3.694072 CAGGCCAAATTTTGATAGTCCGA 59.306 43.478 5.01 0.00 0.00 4.55
3414 4268 3.443681 ACAGGCCAAATTTTGATAGTCCG 59.556 43.478 5.01 0.00 0.00 4.79
3415 4269 5.405935 AACAGGCCAAATTTTGATAGTCC 57.594 39.130 5.01 4.10 0.00 3.85
3416 4270 5.095490 CGAACAGGCCAAATTTTGATAGTC 58.905 41.667 5.01 0.00 0.00 2.59
3417 4271 4.764823 TCGAACAGGCCAAATTTTGATAGT 59.235 37.500 5.01 1.54 0.00 2.12
3418 4272 5.095490 GTCGAACAGGCCAAATTTTGATAG 58.905 41.667 5.01 0.97 0.00 2.08
3419 4273 4.764823 AGTCGAACAGGCCAAATTTTGATA 59.235 37.500 5.01 0.00 0.00 2.15
3420 4274 3.573967 AGTCGAACAGGCCAAATTTTGAT 59.426 39.130 5.01 0.00 0.00 2.57
3421 4275 2.955660 AGTCGAACAGGCCAAATTTTGA 59.044 40.909 5.01 0.00 0.00 2.69
3422 4276 3.369546 AGTCGAACAGGCCAAATTTTG 57.630 42.857 5.01 1.99 0.00 2.44
3423 4277 4.082245 CCATAGTCGAACAGGCCAAATTTT 60.082 41.667 5.01 0.00 0.00 1.82
3424 4278 3.443681 CCATAGTCGAACAGGCCAAATTT 59.556 43.478 5.01 0.00 0.00 1.82
3425 4279 3.016736 CCATAGTCGAACAGGCCAAATT 58.983 45.455 5.01 0.00 0.00 1.82
3426 4280 2.026262 ACCATAGTCGAACAGGCCAAAT 60.026 45.455 5.01 0.00 0.00 2.32
3427 4281 1.349688 ACCATAGTCGAACAGGCCAAA 59.650 47.619 5.01 0.00 0.00 3.28
3428 4282 0.981183 ACCATAGTCGAACAGGCCAA 59.019 50.000 5.01 0.00 0.00 4.52
3429 4283 0.249120 CACCATAGTCGAACAGGCCA 59.751 55.000 5.01 0.00 0.00 5.36
3430 4284 0.462047 CCACCATAGTCGAACAGGCC 60.462 60.000 0.00 0.00 0.00 5.19
3431 4285 0.535335 TCCACCATAGTCGAACAGGC 59.465 55.000 0.00 0.00 0.00 4.85
3432 4286 1.825474 ACTCCACCATAGTCGAACAGG 59.175 52.381 0.00 0.00 0.00 4.00
3433 4287 3.056821 TGAACTCCACCATAGTCGAACAG 60.057 47.826 0.00 0.00 0.00 3.16
3434 4288 2.894765 TGAACTCCACCATAGTCGAACA 59.105 45.455 0.00 0.00 0.00 3.18
3435 4289 3.587797 TGAACTCCACCATAGTCGAAC 57.412 47.619 0.00 0.00 0.00 3.95
3436 4290 3.132289 GGATGAACTCCACCATAGTCGAA 59.868 47.826 0.00 0.00 44.26 3.71
3437 4291 2.693591 GGATGAACTCCACCATAGTCGA 59.306 50.000 0.00 0.00 44.26 4.20
3438 4292 3.099267 GGATGAACTCCACCATAGTCG 57.901 52.381 0.00 0.00 44.26 4.18
3448 4302 1.810030 GCGGTCGTGGATGAACTCC 60.810 63.158 0.00 0.00 45.19 3.85
3449 4303 1.810030 GGCGGTCGTGGATGAACTC 60.810 63.158 0.00 0.00 0.00 3.01
3450 4304 2.264794 GGCGGTCGTGGATGAACT 59.735 61.111 0.00 0.00 0.00 3.01
3451 4305 2.798148 AAGGGCGGTCGTGGATGAAC 62.798 60.000 0.00 0.00 0.00 3.18
3452 4306 2.589157 AAGGGCGGTCGTGGATGAA 61.589 57.895 0.00 0.00 0.00 2.57
3453 4307 3.000819 AAGGGCGGTCGTGGATGA 61.001 61.111 0.00 0.00 0.00 2.92
3454 4308 2.819595 CAAGGGCGGTCGTGGATG 60.820 66.667 0.00 0.00 0.00 3.51
3455 4309 4.778143 GCAAGGGCGGTCGTGGAT 62.778 66.667 0.00 0.00 0.00 3.41
3483 4337 2.436824 GAGAAGGACGGCAAGGGC 60.437 66.667 0.00 0.00 40.13 5.19
3484 4338 2.125512 CGAGAAGGACGGCAAGGG 60.126 66.667 0.00 0.00 0.00 3.95
3485 4339 2.815647 GCGAGAAGGACGGCAAGG 60.816 66.667 0.00 0.00 0.00 3.61
3486 4340 3.181967 CGCGAGAAGGACGGCAAG 61.182 66.667 0.00 0.00 0.00 4.01
3487 4341 4.735132 CCGCGAGAAGGACGGCAA 62.735 66.667 8.23 0.00 40.55 4.52
3489 4343 4.430765 TTCCGCGAGAAGGACGGC 62.431 66.667 8.23 0.00 46.49 5.68
3503 4357 0.179179 CGTCTTCGACCGGTACTTCC 60.179 60.000 7.34 0.00 39.71 3.46
3504 4358 0.796113 GCGTCTTCGACCGGTACTTC 60.796 60.000 7.34 0.00 39.71 3.01
3505 4359 1.211190 GCGTCTTCGACCGGTACTT 59.789 57.895 7.34 0.00 39.71 2.24
3506 4360 2.873288 GCGTCTTCGACCGGTACT 59.127 61.111 7.34 0.00 39.71 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.