Multiple sequence alignment - TraesCS5B01G260800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G260800 chr5B 100.000 2414 0 0 1 2414 445192981 445195394 0.000000e+00 4458
1 TraesCS5B01G260800 chr5A 93.609 1909 88 12 529 2414 475632370 475634267 0.000000e+00 2819
2 TraesCS5B01G260800 chr5D 92.484 1916 95 15 529 2414 373773664 373775560 0.000000e+00 2695
3 TraesCS5B01G260800 chr2D 90.698 387 31 3 1790 2172 626672602 626672987 5.950000e-141 510
4 TraesCS5B01G260800 chr6B 78.261 207 37 4 4 203 702818689 702818484 2.520000e-25 126
5 TraesCS5B01G260800 chr7B 78.469 209 32 8 4 203 485460219 485460015 9.060000e-25 124
6 TraesCS5B01G260800 chr3A 79.558 181 28 5 28 200 21372535 21372714 1.170000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G260800 chr5B 445192981 445195394 2413 False 4458 4458 100.000 1 2414 1 chr5B.!!$F1 2413
1 TraesCS5B01G260800 chr5A 475632370 475634267 1897 False 2819 2819 93.609 529 2414 1 chr5A.!!$F1 1885
2 TraesCS5B01G260800 chr5D 373773664 373775560 1896 False 2695 2695 92.484 529 2414 1 chr5D.!!$F1 1885

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
394 395 0.030235 GGTCAAGGTTCGTGTTTGGC 59.97 55.0 0.0 0.0 0.0 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2299 2332 0.035152 TGAGCTCATGGGTTGCGATT 60.035 50.0 13.74 0.0 0.0 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.269523 TGGCCTCCTTGCAAGCGT 62.270 61.111 21.43 0.00 0.00 5.07
18 19 3.435186 GGCCTCCTTGCAAGCGTC 61.435 66.667 21.43 8.03 0.00 5.19
19 20 2.669569 GCCTCCTTGCAAGCGTCA 60.670 61.111 21.43 3.38 0.00 4.35
20 21 2.042831 GCCTCCTTGCAAGCGTCAT 61.043 57.895 21.43 0.00 0.00 3.06
21 22 1.798735 CCTCCTTGCAAGCGTCATG 59.201 57.895 21.43 6.37 0.00 3.07
22 23 1.651240 CCTCCTTGCAAGCGTCATGG 61.651 60.000 21.43 6.62 0.00 3.66
23 24 0.957395 CTCCTTGCAAGCGTCATGGT 60.957 55.000 21.43 0.00 32.45 3.55
24 25 1.210931 CCTTGCAAGCGTCATGGTG 59.789 57.895 21.43 0.00 0.00 4.17
25 26 1.210931 CTTGCAAGCGTCATGGTGG 59.789 57.895 14.65 0.00 0.00 4.61
26 27 1.228094 TTGCAAGCGTCATGGTGGA 60.228 52.632 0.00 0.00 0.00 4.02
27 28 0.821301 TTGCAAGCGTCATGGTGGAA 60.821 50.000 0.00 0.00 0.00 3.53
28 29 0.821301 TGCAAGCGTCATGGTGGAAA 60.821 50.000 0.00 0.00 0.00 3.13
29 30 0.387239 GCAAGCGTCATGGTGGAAAC 60.387 55.000 0.00 0.00 0.00 2.78
30 31 0.240945 CAAGCGTCATGGTGGAAACC 59.759 55.000 0.00 0.00 0.00 3.27
31 32 0.893727 AAGCGTCATGGTGGAAACCC 60.894 55.000 0.00 0.00 0.00 4.11
32 33 1.303317 GCGTCATGGTGGAAACCCT 60.303 57.895 0.00 0.00 0.00 4.34
33 34 1.305930 GCGTCATGGTGGAAACCCTC 61.306 60.000 0.00 0.00 0.00 4.30
34 35 0.324943 CGTCATGGTGGAAACCCTCT 59.675 55.000 0.00 0.00 0.00 3.69
35 36 1.676014 CGTCATGGTGGAAACCCTCTC 60.676 57.143 0.00 0.00 0.00 3.20
36 37 1.630878 GTCATGGTGGAAACCCTCTCT 59.369 52.381 0.00 0.00 0.00 3.10
37 38 2.838202 GTCATGGTGGAAACCCTCTCTA 59.162 50.000 0.00 0.00 0.00 2.43
38 39 3.107601 TCATGGTGGAAACCCTCTCTAG 58.892 50.000 0.00 0.00 0.00 2.43
39 40 1.276622 TGGTGGAAACCCTCTCTAGC 58.723 55.000 0.00 0.00 0.00 3.42
40 41 1.203313 TGGTGGAAACCCTCTCTAGCT 60.203 52.381 0.00 0.00 0.00 3.32
41 42 1.483004 GGTGGAAACCCTCTCTAGCTC 59.517 57.143 0.00 0.00 0.00 4.09
42 43 1.135333 GTGGAAACCCTCTCTAGCTCG 59.865 57.143 0.00 0.00 0.00 5.03
43 44 1.272536 TGGAAACCCTCTCTAGCTCGT 60.273 52.381 0.00 0.00 0.00 4.18
44 45 1.135333 GGAAACCCTCTCTAGCTCGTG 59.865 57.143 0.00 0.00 0.00 4.35
45 46 1.135333 GAAACCCTCTCTAGCTCGTGG 59.865 57.143 0.00 0.00 0.00 4.94
46 47 0.039911 AACCCTCTCTAGCTCGTGGT 59.960 55.000 0.00 0.00 0.00 4.16
47 48 0.681564 ACCCTCTCTAGCTCGTGGTG 60.682 60.000 0.00 0.00 0.00 4.17
48 49 1.388065 CCCTCTCTAGCTCGTGGTGG 61.388 65.000 0.00 0.00 0.00 4.61
49 50 1.388065 CCTCTCTAGCTCGTGGTGGG 61.388 65.000 0.00 0.00 0.00 4.61
50 51 2.010582 CTCTCTAGCTCGTGGTGGGC 62.011 65.000 0.00 0.00 0.00 5.36
51 52 2.037367 TCTAGCTCGTGGTGGGCT 59.963 61.111 0.00 0.00 39.74 5.19
52 53 0.752009 CTCTAGCTCGTGGTGGGCTA 60.752 60.000 0.00 0.00 37.50 3.93
53 54 1.035932 TCTAGCTCGTGGTGGGCTAC 61.036 60.000 0.00 0.00 37.50 3.58
66 67 0.526662 GGGCTACCCGTGATAGATCG 59.473 60.000 0.00 0.00 32.13 3.69
67 68 0.526662 GGCTACCCGTGATAGATCGG 59.473 60.000 0.00 0.00 45.42 4.18
72 73 3.998924 CCGTGATAGATCGGGATCG 57.001 57.895 3.19 0.00 42.48 3.69
84 85 3.880047 TCGGGATCGAAGAAAAGCTAA 57.120 42.857 0.00 0.00 43.58 3.09
85 86 4.402056 TCGGGATCGAAGAAAAGCTAAT 57.598 40.909 0.00 0.00 43.58 1.73
86 87 4.369182 TCGGGATCGAAGAAAAGCTAATC 58.631 43.478 0.00 0.00 43.58 1.75
87 88 4.099573 TCGGGATCGAAGAAAAGCTAATCT 59.900 41.667 0.00 0.00 43.58 2.40
88 89 4.811557 CGGGATCGAAGAAAAGCTAATCTT 59.188 41.667 12.38 12.38 43.58 2.40
89 90 5.294552 CGGGATCGAAGAAAAGCTAATCTTT 59.705 40.000 13.43 0.00 43.58 2.52
90 91 6.490534 GGGATCGAAGAAAAGCTAATCTTTG 58.509 40.000 17.06 17.06 43.84 2.77
91 92 6.316390 GGGATCGAAGAAAAGCTAATCTTTGA 59.684 38.462 23.50 23.50 45.47 2.69
92 93 7.183433 GGATCGAAGAAAAGCTAATCTTTGAC 58.817 38.462 23.65 18.61 44.67 3.18
93 94 7.065204 GGATCGAAGAAAAGCTAATCTTTGACT 59.935 37.037 23.65 16.41 44.67 3.41
94 95 7.730364 TCGAAGAAAAGCTAATCTTTGACTT 57.270 32.000 19.96 5.26 43.84 3.01
95 96 7.576236 TCGAAGAAAAGCTAATCTTTGACTTG 58.424 34.615 19.96 3.88 43.84 3.16
96 97 6.798959 CGAAGAAAAGCTAATCTTTGACTTGG 59.201 38.462 17.83 2.03 43.84 3.61
97 98 7.520614 CGAAGAAAAGCTAATCTTTGACTTGGT 60.521 37.037 17.83 0.00 43.84 3.67
98 99 6.974965 AGAAAAGCTAATCTTTGACTTGGTG 58.025 36.000 0.00 0.00 43.84 4.17
99 100 6.772716 AGAAAAGCTAATCTTTGACTTGGTGA 59.227 34.615 0.00 0.00 43.84 4.02
100 101 6.566197 AAAGCTAATCTTTGACTTGGTGAG 57.434 37.500 0.00 0.00 43.04 3.51
101 102 4.006319 AGCTAATCTTTGACTTGGTGAGC 58.994 43.478 0.00 0.00 0.00 4.26
102 103 3.181516 GCTAATCTTTGACTTGGTGAGCG 60.182 47.826 0.00 0.00 0.00 5.03
103 104 1.160137 ATCTTTGACTTGGTGAGCGC 58.840 50.000 0.00 0.00 0.00 5.92
104 105 0.106708 TCTTTGACTTGGTGAGCGCT 59.893 50.000 11.27 11.27 0.00 5.92
105 106 1.343142 TCTTTGACTTGGTGAGCGCTA 59.657 47.619 11.50 0.00 0.00 4.26
106 107 2.143122 CTTTGACTTGGTGAGCGCTAA 58.857 47.619 11.50 0.00 0.00 3.09
107 108 2.472695 TTGACTTGGTGAGCGCTAAT 57.527 45.000 11.50 0.00 0.00 1.73
108 109 1.725641 TGACTTGGTGAGCGCTAATG 58.274 50.000 11.50 1.48 0.00 1.90
109 110 1.009829 GACTTGGTGAGCGCTAATGG 58.990 55.000 11.50 1.09 0.00 3.16
110 111 0.324943 ACTTGGTGAGCGCTAATGGT 59.675 50.000 11.50 1.80 0.00 3.55
111 112 1.553248 ACTTGGTGAGCGCTAATGGTA 59.447 47.619 11.50 0.00 0.00 3.25
112 113 2.205074 CTTGGTGAGCGCTAATGGTAG 58.795 52.381 11.50 0.00 0.00 3.18
121 122 0.588252 GCTAATGGTAGCGCATGTGG 59.412 55.000 11.47 0.00 43.29 4.17
122 123 1.810031 GCTAATGGTAGCGCATGTGGA 60.810 52.381 11.47 0.00 43.29 4.02
123 124 1.867233 CTAATGGTAGCGCATGTGGAC 59.133 52.381 11.47 0.00 0.00 4.02
124 125 1.089481 AATGGTAGCGCATGTGGACG 61.089 55.000 11.47 0.00 0.00 4.79
125 126 2.125673 GGTAGCGCATGTGGACGT 60.126 61.111 11.47 0.00 0.00 4.34
126 127 2.165301 GGTAGCGCATGTGGACGTC 61.165 63.158 11.47 7.13 0.00 4.34
127 128 2.202557 TAGCGCATGTGGACGTCG 60.203 61.111 11.47 0.00 0.00 5.12
128 129 2.985117 TAGCGCATGTGGACGTCGT 61.985 57.895 11.47 0.00 0.00 4.34
129 130 2.480853 TAGCGCATGTGGACGTCGTT 62.481 55.000 11.47 0.00 0.00 3.85
130 131 2.769617 CGCATGTGGACGTCGTTC 59.230 61.111 9.92 0.00 0.00 3.95
131 132 1.733041 CGCATGTGGACGTCGTTCT 60.733 57.895 9.92 0.00 0.00 3.01
132 133 1.674611 CGCATGTGGACGTCGTTCTC 61.675 60.000 9.92 1.66 0.00 2.87
133 134 0.388649 GCATGTGGACGTCGTTCTCT 60.389 55.000 9.92 0.00 0.00 3.10
134 135 1.935300 GCATGTGGACGTCGTTCTCTT 60.935 52.381 9.92 0.00 0.00 2.85
135 136 1.986378 CATGTGGACGTCGTTCTCTTC 59.014 52.381 9.92 0.00 0.00 2.87
136 137 0.313043 TGTGGACGTCGTTCTCTTCC 59.687 55.000 9.92 0.00 0.00 3.46
137 138 0.597072 GTGGACGTCGTTCTCTTCCT 59.403 55.000 9.92 0.00 0.00 3.36
138 139 1.000496 GTGGACGTCGTTCTCTTCCTT 60.000 52.381 9.92 0.00 0.00 3.36
139 140 1.000607 TGGACGTCGTTCTCTTCCTTG 60.001 52.381 9.92 0.00 0.00 3.61
140 141 1.669211 GGACGTCGTTCTCTTCCTTGG 60.669 57.143 9.92 0.00 0.00 3.61
141 142 1.268899 GACGTCGTTCTCTTCCTTGGA 59.731 52.381 0.00 0.00 0.00 3.53
142 143 1.684983 ACGTCGTTCTCTTCCTTGGAA 59.315 47.619 1.86 1.86 0.00 3.53
143 144 2.288273 ACGTCGTTCTCTTCCTTGGAAG 60.288 50.000 20.21 20.21 0.00 3.46
144 145 2.070028 GTCGTTCTCTTCCTTGGAAGC 58.930 52.381 21.16 8.97 32.52 3.86
145 146 1.071605 CGTTCTCTTCCTTGGAAGCG 58.928 55.000 21.16 16.54 32.52 4.68
146 147 1.605712 CGTTCTCTTCCTTGGAAGCGT 60.606 52.381 21.16 0.00 32.52 5.07
147 148 2.495084 GTTCTCTTCCTTGGAAGCGTT 58.505 47.619 21.16 0.00 32.52 4.84
148 149 2.169832 TCTCTTCCTTGGAAGCGTTG 57.830 50.000 21.16 12.43 32.52 4.10
149 150 0.519077 CTCTTCCTTGGAAGCGTTGC 59.481 55.000 21.16 0.00 32.52 4.17
150 151 0.889186 TCTTCCTTGGAAGCGTTGCC 60.889 55.000 21.16 0.00 32.52 4.52
151 152 1.152860 TTCCTTGGAAGCGTTGCCA 60.153 52.632 0.00 0.00 0.00 4.92
152 153 0.539438 TTCCTTGGAAGCGTTGCCAT 60.539 50.000 0.00 0.00 33.46 4.40
153 154 0.539438 TCCTTGGAAGCGTTGCCATT 60.539 50.000 0.00 0.00 33.46 3.16
154 155 0.318120 CCTTGGAAGCGTTGCCATTT 59.682 50.000 0.00 0.00 33.46 2.32
155 156 1.669795 CCTTGGAAGCGTTGCCATTTC 60.670 52.381 0.00 0.00 33.46 2.17
156 157 0.316841 TTGGAAGCGTTGCCATTTCC 59.683 50.000 0.00 2.36 39.59 3.13
157 158 1.215382 GGAAGCGTTGCCATTTCCC 59.785 57.895 0.00 0.00 34.38 3.97
158 159 1.215382 GAAGCGTTGCCATTTCCCC 59.785 57.895 0.00 0.00 0.00 4.81
159 160 2.225791 GAAGCGTTGCCATTTCCCCC 62.226 60.000 0.00 0.00 0.00 5.40
160 161 2.679996 GCGTTGCCATTTCCCCCT 60.680 61.111 0.00 0.00 0.00 4.79
161 162 2.282783 GCGTTGCCATTTCCCCCTT 61.283 57.895 0.00 0.00 0.00 3.95
162 163 1.890174 CGTTGCCATTTCCCCCTTC 59.110 57.895 0.00 0.00 0.00 3.46
163 164 1.604147 CGTTGCCATTTCCCCCTTCC 61.604 60.000 0.00 0.00 0.00 3.46
164 165 1.080170 TTGCCATTTCCCCCTTCCC 59.920 57.895 0.00 0.00 0.00 3.97
165 166 2.041922 GCCATTTCCCCCTTCCCC 60.042 66.667 0.00 0.00 0.00 4.81
166 167 2.636617 GCCATTTCCCCCTTCCCCT 61.637 63.158 0.00 0.00 0.00 4.79
167 168 1.293683 GCCATTTCCCCCTTCCCCTA 61.294 60.000 0.00 0.00 0.00 3.53
168 169 0.853530 CCATTTCCCCCTTCCCCTAG 59.146 60.000 0.00 0.00 0.00 3.02
169 170 0.186143 CATTTCCCCCTTCCCCTAGC 59.814 60.000 0.00 0.00 0.00 3.42
170 171 0.254107 ATTTCCCCCTTCCCCTAGCA 60.254 55.000 0.00 0.00 0.00 3.49
171 172 0.919289 TTTCCCCCTTCCCCTAGCAG 60.919 60.000 0.00 0.00 0.00 4.24
172 173 3.493303 CCCCCTTCCCCTAGCAGC 61.493 72.222 0.00 0.00 0.00 5.25
173 174 3.493303 CCCCTTCCCCTAGCAGCC 61.493 72.222 0.00 0.00 0.00 4.85
174 175 2.367512 CCCTTCCCCTAGCAGCCT 60.368 66.667 0.00 0.00 0.00 4.58
175 176 2.003548 CCCTTCCCCTAGCAGCCTT 61.004 63.158 0.00 0.00 0.00 4.35
176 177 1.225704 CCTTCCCCTAGCAGCCTTG 59.774 63.158 0.00 0.00 0.00 3.61
177 178 1.225704 CTTCCCCTAGCAGCCTTGG 59.774 63.158 0.00 0.00 34.26 3.61
178 179 1.541368 TTCCCCTAGCAGCCTTGGT 60.541 57.895 0.00 0.00 38.79 3.67
179 180 1.140134 TTCCCCTAGCAGCCTTGGTT 61.140 55.000 0.00 0.00 36.27 3.67
180 181 1.077429 CCCCTAGCAGCCTTGGTTC 60.077 63.158 0.00 0.00 36.27 3.62
181 182 1.685224 CCCTAGCAGCCTTGGTTCA 59.315 57.895 0.00 0.00 36.27 3.18
182 183 0.678048 CCCTAGCAGCCTTGGTTCAC 60.678 60.000 0.00 0.00 36.27 3.18
183 184 0.326264 CCTAGCAGCCTTGGTTCACT 59.674 55.000 0.00 0.00 36.27 3.41
184 185 1.677217 CCTAGCAGCCTTGGTTCACTC 60.677 57.143 0.00 0.00 36.27 3.51
185 186 1.002430 CTAGCAGCCTTGGTTCACTCA 59.998 52.381 0.00 0.00 36.27 3.41
186 187 0.250640 AGCAGCCTTGGTTCACTCAG 60.251 55.000 0.00 0.00 0.00 3.35
187 188 0.536006 GCAGCCTTGGTTCACTCAGT 60.536 55.000 0.00 0.00 0.00 3.41
188 189 1.233019 CAGCCTTGGTTCACTCAGTG 58.767 55.000 0.00 0.00 34.45 3.66
189 190 0.839946 AGCCTTGGTTCACTCAGTGT 59.160 50.000 4.28 0.00 34.79 3.55
191 192 1.597742 CCTTGGTTCACTCAGTGTGG 58.402 55.000 4.28 0.00 46.20 4.17
192 193 0.947244 CTTGGTTCACTCAGTGTGGC 59.053 55.000 4.28 0.00 46.20 5.01
193 194 0.813610 TTGGTTCACTCAGTGTGGCG 60.814 55.000 4.28 0.00 46.20 5.69
194 195 2.607892 GGTTCACTCAGTGTGGCGC 61.608 63.158 4.28 0.00 46.20 6.53
195 196 2.661537 TTCACTCAGTGTGGCGCG 60.662 61.111 4.28 0.00 46.20 6.86
208 209 2.807895 GCGCGCTCGGTGAGTTTA 60.808 61.111 26.67 0.00 35.95 2.01
209 210 2.789203 GCGCGCTCGGTGAGTTTAG 61.789 63.158 26.67 0.00 35.95 1.85
210 211 2.158959 CGCGCTCGGTGAGTTTAGG 61.159 63.158 5.56 0.00 31.39 2.69
211 212 1.214589 GCGCTCGGTGAGTTTAGGA 59.785 57.895 0.00 0.00 31.39 2.94
212 213 1.077089 GCGCTCGGTGAGTTTAGGAC 61.077 60.000 0.00 0.00 31.39 3.85
213 214 0.458025 CGCTCGGTGAGTTTAGGACC 60.458 60.000 0.00 0.00 31.39 4.46
214 215 0.606604 GCTCGGTGAGTTTAGGACCA 59.393 55.000 0.00 0.00 31.39 4.02
215 216 1.001633 GCTCGGTGAGTTTAGGACCAA 59.998 52.381 0.00 0.00 31.39 3.67
216 217 2.931320 GCTCGGTGAGTTTAGGACCAAG 60.931 54.545 0.00 0.00 31.39 3.61
217 218 1.001633 TCGGTGAGTTTAGGACCAAGC 59.998 52.381 0.00 0.00 0.00 4.01
218 219 1.002087 CGGTGAGTTTAGGACCAAGCT 59.998 52.381 0.00 0.00 0.00 3.74
219 220 2.232941 CGGTGAGTTTAGGACCAAGCTA 59.767 50.000 0.00 0.00 0.00 3.32
220 221 3.597255 GGTGAGTTTAGGACCAAGCTAC 58.403 50.000 0.00 0.00 0.00 3.58
221 222 3.261137 GGTGAGTTTAGGACCAAGCTACT 59.739 47.826 0.00 0.00 0.00 2.57
222 223 4.496360 GTGAGTTTAGGACCAAGCTACTC 58.504 47.826 0.00 0.00 0.00 2.59
223 224 4.221041 GTGAGTTTAGGACCAAGCTACTCT 59.779 45.833 8.51 0.00 33.50 3.24
224 225 4.838986 TGAGTTTAGGACCAAGCTACTCTT 59.161 41.667 8.51 0.00 33.50 2.85
225 226 5.307196 TGAGTTTAGGACCAAGCTACTCTTT 59.693 40.000 8.51 0.00 33.50 2.52
226 227 5.552178 AGTTTAGGACCAAGCTACTCTTTG 58.448 41.667 0.00 0.00 31.27 2.77
227 228 4.553330 TTAGGACCAAGCTACTCTTTGG 57.447 45.455 0.00 0.00 31.27 3.28
228 229 2.339769 AGGACCAAGCTACTCTTTGGT 58.660 47.619 5.18 5.18 38.23 3.67
229 230 2.039084 AGGACCAAGCTACTCTTTGGTG 59.961 50.000 10.22 0.00 36.78 4.17
230 231 2.224548 GGACCAAGCTACTCTTTGGTGT 60.225 50.000 10.22 0.00 36.78 4.16
231 232 2.808543 GACCAAGCTACTCTTTGGTGTG 59.191 50.000 10.22 0.00 36.78 3.82
232 233 1.537202 CCAAGCTACTCTTTGGTGTGC 59.463 52.381 0.00 0.00 31.27 4.57
233 234 2.221169 CAAGCTACTCTTTGGTGTGCA 58.779 47.619 0.00 0.00 31.27 4.57
234 235 2.816087 CAAGCTACTCTTTGGTGTGCAT 59.184 45.455 0.00 0.00 31.27 3.96
235 236 2.430465 AGCTACTCTTTGGTGTGCATG 58.570 47.619 0.00 0.00 0.00 4.06
236 237 1.135575 GCTACTCTTTGGTGTGCATGC 60.136 52.381 11.82 11.82 0.00 4.06
237 238 2.430465 CTACTCTTTGGTGTGCATGCT 58.570 47.619 20.33 0.00 0.00 3.79
238 239 1.242076 ACTCTTTGGTGTGCATGCTC 58.758 50.000 20.33 16.39 0.00 4.26
239 240 1.241165 CTCTTTGGTGTGCATGCTCA 58.759 50.000 20.33 19.12 0.00 4.26
240 241 1.816835 CTCTTTGGTGTGCATGCTCAT 59.183 47.619 23.88 0.00 0.00 2.90
241 242 1.542472 TCTTTGGTGTGCATGCTCATG 59.458 47.619 23.88 12.55 41.60 3.07
242 243 1.542472 CTTTGGTGTGCATGCTCATGA 59.458 47.619 23.88 11.77 41.20 3.07
243 244 1.842052 TTGGTGTGCATGCTCATGAT 58.158 45.000 23.88 0.00 41.20 2.45
244 245 1.385528 TGGTGTGCATGCTCATGATC 58.614 50.000 23.88 11.80 41.20 2.92
245 246 0.666913 GGTGTGCATGCTCATGATCC 59.333 55.000 23.88 16.55 41.20 3.36
246 247 1.676746 GTGTGCATGCTCATGATCCT 58.323 50.000 23.88 0.00 41.20 3.24
247 248 1.602851 GTGTGCATGCTCATGATCCTC 59.397 52.381 23.88 7.07 41.20 3.71
248 249 1.236628 GTGCATGCTCATGATCCTCC 58.763 55.000 20.33 0.00 41.20 4.30
249 250 0.109913 TGCATGCTCATGATCCTCCC 59.890 55.000 20.33 0.00 41.20 4.30
250 251 0.109913 GCATGCTCATGATCCTCCCA 59.890 55.000 11.37 0.00 41.20 4.37
251 252 1.271982 GCATGCTCATGATCCTCCCAT 60.272 52.381 11.37 0.00 41.20 4.00
252 253 2.437413 CATGCTCATGATCCTCCCATG 58.563 52.381 3.88 0.00 41.20 3.66
253 254 0.769247 TGCTCATGATCCTCCCATGG 59.231 55.000 4.14 4.14 41.16 3.66
254 255 0.608582 GCTCATGATCCTCCCATGGC 60.609 60.000 6.09 0.00 41.16 4.40
255 256 1.065647 CTCATGATCCTCCCATGGCT 58.934 55.000 6.09 0.00 41.16 4.75
256 257 2.263545 CTCATGATCCTCCCATGGCTA 58.736 52.381 6.09 0.00 41.16 3.93
257 258 1.980765 TCATGATCCTCCCATGGCTAC 59.019 52.381 6.09 0.00 41.16 3.58
258 259 1.004044 CATGATCCTCCCATGGCTACC 59.996 57.143 6.09 0.00 38.12 3.18
259 260 1.121407 TGATCCTCCCATGGCTACCG 61.121 60.000 6.09 0.00 0.00 4.02
260 261 1.074471 ATCCTCCCATGGCTACCGT 60.074 57.895 6.09 0.00 0.00 4.83
261 262 0.694444 ATCCTCCCATGGCTACCGTT 60.694 55.000 6.09 0.00 0.00 4.44
262 263 1.153168 CCTCCCATGGCTACCGTTG 60.153 63.158 6.09 0.00 0.00 4.10
263 264 1.602237 CTCCCATGGCTACCGTTGT 59.398 57.895 6.09 0.00 0.00 3.32
264 265 0.744414 CTCCCATGGCTACCGTTGTG 60.744 60.000 6.09 0.00 0.00 3.33
265 266 1.002624 CCCATGGCTACCGTTGTGT 60.003 57.895 6.09 0.00 0.00 3.72
266 267 0.608035 CCCATGGCTACCGTTGTGTT 60.608 55.000 6.09 0.00 0.00 3.32
267 268 0.521291 CCATGGCTACCGTTGTGTTG 59.479 55.000 0.00 0.00 0.00 3.33
268 269 0.109781 CATGGCTACCGTTGTGTTGC 60.110 55.000 0.00 0.00 36.45 4.17
269 270 1.573829 ATGGCTACCGTTGTGTTGCG 61.574 55.000 0.00 0.00 37.77 4.85
274 275 4.368808 CCGTTGTGTTGCGGCGAG 62.369 66.667 12.98 0.00 41.53 5.03
291 292 4.767255 GCTCCGTGCTCCTGGTGG 62.767 72.222 0.00 0.00 38.95 4.61
292 293 3.314331 CTCCGTGCTCCTGGTGGT 61.314 66.667 0.00 0.00 34.23 4.16
293 294 2.847234 TCCGTGCTCCTGGTGGTT 60.847 61.111 0.00 0.00 34.23 3.67
294 295 2.669569 CCGTGCTCCTGGTGGTTG 60.670 66.667 0.00 0.00 34.23 3.77
295 296 2.111043 CGTGCTCCTGGTGGTTGT 59.889 61.111 0.00 0.00 34.23 3.32
296 297 2.253758 CGTGCTCCTGGTGGTTGTG 61.254 63.158 0.00 0.00 34.23 3.33
297 298 1.898574 GTGCTCCTGGTGGTTGTGG 60.899 63.158 0.00 0.00 34.23 4.17
298 299 2.382770 TGCTCCTGGTGGTTGTGGT 61.383 57.895 0.00 0.00 34.23 4.16
299 300 1.152756 GCTCCTGGTGGTTGTGGTT 60.153 57.895 0.00 0.00 34.23 3.67
300 301 1.172812 GCTCCTGGTGGTTGTGGTTC 61.173 60.000 0.00 0.00 34.23 3.62
301 302 0.182537 CTCCTGGTGGTTGTGGTTCA 59.817 55.000 0.00 0.00 34.23 3.18
302 303 0.850100 TCCTGGTGGTTGTGGTTCAT 59.150 50.000 0.00 0.00 34.23 2.57
303 304 1.202879 TCCTGGTGGTTGTGGTTCATC 60.203 52.381 0.00 0.00 34.23 2.92
304 305 1.202927 CCTGGTGGTTGTGGTTCATCT 60.203 52.381 0.00 0.00 0.00 2.90
305 306 2.586425 CTGGTGGTTGTGGTTCATCTT 58.414 47.619 0.00 0.00 0.00 2.40
306 307 2.958355 CTGGTGGTTGTGGTTCATCTTT 59.042 45.455 0.00 0.00 0.00 2.52
307 308 2.692557 TGGTGGTTGTGGTTCATCTTTG 59.307 45.455 0.00 0.00 0.00 2.77
308 309 2.545742 GGTGGTTGTGGTTCATCTTTGC 60.546 50.000 0.00 0.00 0.00 3.68
309 310 2.362077 GTGGTTGTGGTTCATCTTTGCT 59.638 45.455 0.00 0.00 0.00 3.91
310 311 3.030291 TGGTTGTGGTTCATCTTTGCTT 58.970 40.909 0.00 0.00 0.00 3.91
311 312 4.037446 GTGGTTGTGGTTCATCTTTGCTTA 59.963 41.667 0.00 0.00 0.00 3.09
312 313 4.646945 TGGTTGTGGTTCATCTTTGCTTAA 59.353 37.500 0.00 0.00 0.00 1.85
313 314 5.304101 TGGTTGTGGTTCATCTTTGCTTAAT 59.696 36.000 0.00 0.00 0.00 1.40
314 315 6.491745 TGGTTGTGGTTCATCTTTGCTTAATA 59.508 34.615 0.00 0.00 0.00 0.98
315 316 7.014711 TGGTTGTGGTTCATCTTTGCTTAATAA 59.985 33.333 0.00 0.00 0.00 1.40
316 317 8.034804 GGTTGTGGTTCATCTTTGCTTAATAAT 58.965 33.333 0.00 0.00 0.00 1.28
317 318 8.863049 GTTGTGGTTCATCTTTGCTTAATAATG 58.137 33.333 0.00 0.00 0.00 1.90
318 319 8.347004 TGTGGTTCATCTTTGCTTAATAATGA 57.653 30.769 0.00 0.00 0.00 2.57
319 320 8.243426 TGTGGTTCATCTTTGCTTAATAATGAC 58.757 33.333 0.00 0.00 0.00 3.06
320 321 7.429340 GTGGTTCATCTTTGCTTAATAATGACG 59.571 37.037 0.00 0.00 0.00 4.35
321 322 7.120579 TGGTTCATCTTTGCTTAATAATGACGT 59.879 33.333 0.00 0.00 0.00 4.34
322 323 8.609176 GGTTCATCTTTGCTTAATAATGACGTA 58.391 33.333 0.00 0.00 0.00 3.57
323 324 9.982291 GTTCATCTTTGCTTAATAATGACGTAA 57.018 29.630 0.00 0.00 0.00 3.18
325 326 9.594478 TCATCTTTGCTTAATAATGACGTAAGA 57.406 29.630 0.00 0.00 43.62 2.10
328 329 8.335356 TCTTTGCTTAATAATGACGTAAGATGC 58.665 33.333 0.00 0.00 43.62 3.91
329 330 6.539649 TGCTTAATAATGACGTAAGATGCC 57.460 37.500 0.00 0.00 43.62 4.40
330 331 6.288294 TGCTTAATAATGACGTAAGATGCCT 58.712 36.000 0.00 0.00 43.62 4.75
331 332 6.423905 TGCTTAATAATGACGTAAGATGCCTC 59.576 38.462 0.00 0.00 43.62 4.70
332 333 6.128526 GCTTAATAATGACGTAAGATGCCTCC 60.129 42.308 0.00 0.00 43.62 4.30
333 334 2.622064 AATGACGTAAGATGCCTCCC 57.378 50.000 0.00 0.00 43.62 4.30
334 335 0.759346 ATGACGTAAGATGCCTCCCC 59.241 55.000 0.00 0.00 43.62 4.81
335 336 0.616395 TGACGTAAGATGCCTCCCCA 60.616 55.000 0.00 0.00 43.62 4.96
336 337 0.539986 GACGTAAGATGCCTCCCCAA 59.460 55.000 0.00 0.00 43.62 4.12
337 338 0.252197 ACGTAAGATGCCTCCCCAAC 59.748 55.000 0.00 0.00 43.62 3.77
338 339 0.251916 CGTAAGATGCCTCCCCAACA 59.748 55.000 0.00 0.00 43.02 3.33
339 340 1.134098 CGTAAGATGCCTCCCCAACAT 60.134 52.381 0.00 0.00 43.02 2.71
340 341 2.683742 CGTAAGATGCCTCCCCAACATT 60.684 50.000 0.00 0.00 43.02 2.71
341 342 1.856629 AAGATGCCTCCCCAACATTG 58.143 50.000 0.00 0.00 0.00 2.82
342 343 0.685458 AGATGCCTCCCCAACATTGC 60.685 55.000 0.00 0.00 0.00 3.56
343 344 0.685458 GATGCCTCCCCAACATTGCT 60.685 55.000 0.00 0.00 0.00 3.91
344 345 0.630673 ATGCCTCCCCAACATTGCTA 59.369 50.000 0.00 0.00 0.00 3.49
345 346 0.034186 TGCCTCCCCAACATTGCTAG 60.034 55.000 0.00 0.00 0.00 3.42
346 347 0.034089 GCCTCCCCAACATTGCTAGT 60.034 55.000 0.00 0.00 0.00 2.57
347 348 2.019156 GCCTCCCCAACATTGCTAGTC 61.019 57.143 0.00 0.00 0.00 2.59
348 349 1.656652 CTCCCCAACATTGCTAGTCG 58.343 55.000 0.00 0.00 0.00 4.18
349 350 0.981183 TCCCCAACATTGCTAGTCGT 59.019 50.000 0.00 0.00 0.00 4.34
350 351 1.349688 TCCCCAACATTGCTAGTCGTT 59.650 47.619 0.00 0.00 0.00 3.85
351 352 2.159382 CCCCAACATTGCTAGTCGTTT 58.841 47.619 0.00 0.00 0.00 3.60
352 353 2.161609 CCCCAACATTGCTAGTCGTTTC 59.838 50.000 0.00 0.00 0.00 2.78
353 354 2.811431 CCCAACATTGCTAGTCGTTTCA 59.189 45.455 0.00 0.00 0.00 2.69
354 355 3.252215 CCCAACATTGCTAGTCGTTTCAA 59.748 43.478 0.00 0.00 0.00 2.69
355 356 4.261405 CCCAACATTGCTAGTCGTTTCAAA 60.261 41.667 0.00 0.00 0.00 2.69
356 357 5.460646 CCAACATTGCTAGTCGTTTCAAAT 58.539 37.500 0.00 0.00 0.00 2.32
357 358 5.920273 CCAACATTGCTAGTCGTTTCAAATT 59.080 36.000 0.00 0.00 0.00 1.82
358 359 6.420604 CCAACATTGCTAGTCGTTTCAAATTT 59.579 34.615 0.00 0.00 0.00 1.82
359 360 7.358352 CCAACATTGCTAGTCGTTTCAAATTTC 60.358 37.037 0.00 0.00 0.00 2.17
360 361 6.149633 ACATTGCTAGTCGTTTCAAATTTCC 58.850 36.000 0.00 0.00 0.00 3.13
361 362 5.759506 TTGCTAGTCGTTTCAAATTTCCA 57.240 34.783 0.00 0.00 0.00 3.53
362 363 5.103290 TGCTAGTCGTTTCAAATTTCCAC 57.897 39.130 0.00 0.00 0.00 4.02
363 364 4.148891 GCTAGTCGTTTCAAATTTCCACG 58.851 43.478 6.89 6.89 0.00 4.94
364 365 3.619233 AGTCGTTTCAAATTTCCACGG 57.381 42.857 11.45 0.00 0.00 4.94
365 366 2.048498 GTCGTTTCAAATTTCCACGGC 58.952 47.619 11.45 7.52 0.00 5.68
366 367 1.049251 CGTTTCAAATTTCCACGGCG 58.951 50.000 4.80 4.80 0.00 6.46
367 368 1.414378 GTTTCAAATTTCCACGGCGG 58.586 50.000 13.24 0.00 0.00 6.13
368 369 1.001158 GTTTCAAATTTCCACGGCGGA 60.001 47.619 13.24 0.00 44.40 5.54
375 376 3.691342 TCCACGGCGGAACTCCTG 61.691 66.667 13.24 0.00 42.52 3.86
376 377 4.760047 CCACGGCGGAACTCCTGG 62.760 72.222 13.24 3.59 36.56 4.45
377 378 4.003788 CACGGCGGAACTCCTGGT 62.004 66.667 13.24 0.00 0.00 4.00
378 379 3.692406 ACGGCGGAACTCCTGGTC 61.692 66.667 13.24 0.00 0.00 4.02
379 380 3.691342 CGGCGGAACTCCTGGTCA 61.691 66.667 0.00 0.00 0.00 4.02
380 381 2.747686 GGCGGAACTCCTGGTCAA 59.252 61.111 0.00 0.00 0.00 3.18
381 382 1.376037 GGCGGAACTCCTGGTCAAG 60.376 63.158 0.00 0.00 0.00 3.02
390 391 3.396951 CCTGGTCAAGGTTCGTGTT 57.603 52.632 0.00 0.00 41.74 3.32
391 392 1.675552 CCTGGTCAAGGTTCGTGTTT 58.324 50.000 0.00 0.00 41.74 2.83
392 393 1.333619 CCTGGTCAAGGTTCGTGTTTG 59.666 52.381 0.00 0.00 41.74 2.93
393 394 1.333619 CTGGTCAAGGTTCGTGTTTGG 59.666 52.381 0.00 0.00 0.00 3.28
394 395 0.030235 GGTCAAGGTTCGTGTTTGGC 59.970 55.000 0.00 0.00 0.00 4.52
395 396 1.021968 GTCAAGGTTCGTGTTTGGCT 58.978 50.000 0.00 0.00 0.00 4.75
396 397 2.215196 GTCAAGGTTCGTGTTTGGCTA 58.785 47.619 0.00 0.00 0.00 3.93
397 398 2.812011 GTCAAGGTTCGTGTTTGGCTAT 59.188 45.455 0.00 0.00 0.00 2.97
398 399 3.998341 GTCAAGGTTCGTGTTTGGCTATA 59.002 43.478 0.00 0.00 0.00 1.31
399 400 4.453136 GTCAAGGTTCGTGTTTGGCTATAA 59.547 41.667 0.00 0.00 0.00 0.98
400 401 4.453136 TCAAGGTTCGTGTTTGGCTATAAC 59.547 41.667 0.00 0.00 0.00 1.89
401 402 4.010667 AGGTTCGTGTTTGGCTATAACA 57.989 40.909 0.00 0.00 33.37 2.41
411 412 7.701539 TGTTTGGCTATAACACTCATTGATT 57.298 32.000 0.00 0.00 30.96 2.57
412 413 7.537715 TGTTTGGCTATAACACTCATTGATTG 58.462 34.615 2.71 2.71 30.96 2.67
413 414 7.176515 TGTTTGGCTATAACACTCATTGATTGT 59.823 33.333 3.98 3.98 30.96 2.71
414 415 8.673711 GTTTGGCTATAACACTCATTGATTGTA 58.326 33.333 9.74 0.91 0.00 2.41
415 416 8.978874 TTGGCTATAACACTCATTGATTGTAT 57.021 30.769 9.74 7.04 0.00 2.29
416 417 8.978874 TGGCTATAACACTCATTGATTGTATT 57.021 30.769 9.74 4.19 0.00 1.89
417 418 8.839343 TGGCTATAACACTCATTGATTGTATTG 58.161 33.333 9.74 6.79 0.00 1.90
418 419 7.805071 GGCTATAACACTCATTGATTGTATTGC 59.195 37.037 9.74 13.38 0.00 3.56
419 420 8.344831 GCTATAACACTCATTGATTGTATTGCA 58.655 33.333 9.74 0.00 0.00 4.08
420 421 9.655769 CTATAACACTCATTGATTGTATTGCAC 57.344 33.333 9.74 0.00 0.00 4.57
421 422 5.314923 ACACTCATTGATTGTATTGCACC 57.685 39.130 7.79 0.00 0.00 5.01
422 423 4.142622 ACACTCATTGATTGTATTGCACCG 60.143 41.667 7.79 0.00 0.00 4.94
423 424 4.009675 ACTCATTGATTGTATTGCACCGT 58.990 39.130 0.00 0.00 0.00 4.83
424 425 4.142622 ACTCATTGATTGTATTGCACCGTG 60.143 41.667 0.00 0.00 0.00 4.94
425 426 3.128415 TCATTGATTGTATTGCACCGTGG 59.872 43.478 0.00 0.00 0.00 4.94
426 427 1.458398 TGATTGTATTGCACCGTGGG 58.542 50.000 0.00 0.00 0.00 4.61
427 428 0.738389 GATTGTATTGCACCGTGGGG 59.262 55.000 0.00 0.00 40.11 4.96
437 438 2.584143 CCGTGGGGTTCGATACGC 60.584 66.667 0.00 0.00 38.89 4.42
438 439 2.182284 CGTGGGGTTCGATACGCA 59.818 61.111 13.68 9.04 41.24 5.24
439 440 1.227147 CGTGGGGTTCGATACGCAT 60.227 57.895 9.27 0.00 41.24 4.73
440 441 1.487452 CGTGGGGTTCGATACGCATG 61.487 60.000 9.27 9.82 41.24 4.06
441 442 1.522806 TGGGGTTCGATACGCATGC 60.523 57.895 7.91 7.91 41.24 4.06
442 443 2.251642 GGGGTTCGATACGCATGCC 61.252 63.158 13.15 0.00 41.24 4.40
443 444 2.594962 GGGTTCGATACGCATGCCG 61.595 63.158 13.15 10.03 44.21 5.69
444 445 2.594962 GGTTCGATACGCATGCCGG 61.595 63.158 13.15 0.00 42.52 6.13
445 446 1.881252 GTTCGATACGCATGCCGGT 60.881 57.895 13.15 7.84 42.52 5.28
446 447 1.880796 TTCGATACGCATGCCGGTG 60.881 57.895 13.15 0.00 42.52 4.94
447 448 4.000557 CGATACGCATGCCGGTGC 62.001 66.667 13.15 4.90 42.52 5.01
456 457 4.610714 TGCCGGTGCAGTGCGTTA 62.611 61.111 11.20 0.00 44.23 3.18
457 458 3.788766 GCCGGTGCAGTGCGTTAG 61.789 66.667 11.20 0.42 37.47 2.34
458 459 3.118454 CCGGTGCAGTGCGTTAGG 61.118 66.667 11.20 7.45 0.00 2.69
459 460 3.788766 CGGTGCAGTGCGTTAGGC 61.789 66.667 11.20 0.00 43.96 3.93
460 461 2.358737 GGTGCAGTGCGTTAGGCT 60.359 61.111 11.20 0.00 44.05 4.58
461 462 2.680913 GGTGCAGTGCGTTAGGCTG 61.681 63.158 11.20 0.00 44.05 4.85
464 465 3.972227 CAGTGCGTTAGGCTGCTT 58.028 55.556 0.00 0.00 44.05 3.91
465 466 1.499056 CAGTGCGTTAGGCTGCTTG 59.501 57.895 0.00 0.00 44.05 4.01
466 467 1.071471 AGTGCGTTAGGCTGCTTGT 59.929 52.632 0.00 0.00 44.05 3.16
467 468 0.320374 AGTGCGTTAGGCTGCTTGTA 59.680 50.000 0.00 0.00 44.05 2.41
468 469 1.153353 GTGCGTTAGGCTGCTTGTAA 58.847 50.000 0.00 0.00 44.05 2.41
469 470 1.533731 GTGCGTTAGGCTGCTTGTAAA 59.466 47.619 0.00 0.00 44.05 2.01
470 471 1.804151 TGCGTTAGGCTGCTTGTAAAG 59.196 47.619 0.00 0.00 45.21 1.85
471 472 1.804748 GCGTTAGGCTGCTTGTAAAGT 59.195 47.619 0.00 0.00 42.22 2.66
472 473 2.159693 GCGTTAGGCTGCTTGTAAAGTC 60.160 50.000 0.00 0.00 42.22 3.01
473 474 4.413777 GCGTTAGGCTGCTTGTAAAGTCT 61.414 47.826 0.00 0.00 42.22 3.24
474 475 5.857106 GCGTTAGGCTGCTTGTAAAGTCTT 61.857 45.833 0.00 0.00 42.22 3.01
475 476 7.800983 GCGTTAGGCTGCTTGTAAAGTCTTG 62.801 48.000 0.00 0.00 42.22 3.02
487 488 7.681939 TTGTAAAGTCTTGGTATTGTGATCC 57.318 36.000 0.00 0.00 0.00 3.36
488 489 6.177610 TGTAAAGTCTTGGTATTGTGATCCC 58.822 40.000 0.00 0.00 0.00 3.85
489 490 5.520748 AAAGTCTTGGTATTGTGATCCCT 57.479 39.130 0.00 0.00 0.00 4.20
490 491 4.762289 AGTCTTGGTATTGTGATCCCTC 57.238 45.455 0.00 0.00 0.00 4.30
491 492 3.133003 AGTCTTGGTATTGTGATCCCTCG 59.867 47.826 0.00 0.00 0.00 4.63
492 493 3.132289 GTCTTGGTATTGTGATCCCTCGA 59.868 47.826 0.00 0.00 0.00 4.04
493 494 3.132289 TCTTGGTATTGTGATCCCTCGAC 59.868 47.826 0.00 0.00 0.00 4.20
494 495 1.407618 TGGTATTGTGATCCCTCGACG 59.592 52.381 0.00 0.00 0.00 5.12
495 496 1.679680 GGTATTGTGATCCCTCGACGA 59.320 52.381 0.00 0.00 0.00 4.20
496 497 2.543238 GGTATTGTGATCCCTCGACGAC 60.543 54.545 0.00 0.00 0.00 4.34
497 498 1.182667 ATTGTGATCCCTCGACGACA 58.817 50.000 0.00 0.00 0.00 4.35
498 499 1.182667 TTGTGATCCCTCGACGACAT 58.817 50.000 0.00 0.00 0.00 3.06
499 500 0.738975 TGTGATCCCTCGACGACATC 59.261 55.000 0.00 0.00 0.00 3.06
500 501 0.030908 GTGATCCCTCGACGACATCC 59.969 60.000 0.00 0.00 0.00 3.51
501 502 1.107538 TGATCCCTCGACGACATCCC 61.108 60.000 0.00 0.00 0.00 3.85
502 503 1.076265 ATCCCTCGACGACATCCCA 60.076 57.895 0.00 0.00 0.00 4.37
503 504 1.392710 ATCCCTCGACGACATCCCAC 61.393 60.000 0.00 0.00 0.00 4.61
504 505 2.348104 CCCTCGACGACATCCCACA 61.348 63.158 0.00 0.00 0.00 4.17
505 506 1.676678 CCCTCGACGACATCCCACAT 61.677 60.000 0.00 0.00 0.00 3.21
506 507 0.249073 CCTCGACGACATCCCACATC 60.249 60.000 0.00 0.00 0.00 3.06
507 508 0.741326 CTCGACGACATCCCACATCT 59.259 55.000 0.00 0.00 0.00 2.90
508 509 0.738975 TCGACGACATCCCACATCTC 59.261 55.000 0.00 0.00 0.00 2.75
509 510 0.249073 CGACGACATCCCACATCTCC 60.249 60.000 0.00 0.00 0.00 3.71
510 511 1.115467 GACGACATCCCACATCTCCT 58.885 55.000 0.00 0.00 0.00 3.69
511 512 1.482593 GACGACATCCCACATCTCCTT 59.517 52.381 0.00 0.00 0.00 3.36
512 513 1.208052 ACGACATCCCACATCTCCTTG 59.792 52.381 0.00 0.00 0.00 3.61
513 514 1.482182 CGACATCCCACATCTCCTTGA 59.518 52.381 0.00 0.00 0.00 3.02
514 515 2.482664 CGACATCCCACATCTCCTTGAG 60.483 54.545 0.00 0.00 0.00 3.02
515 516 1.842562 ACATCCCACATCTCCTTGAGG 59.157 52.381 0.00 0.00 0.00 3.86
516 517 0.842635 ATCCCACATCTCCTTGAGGC 59.157 55.000 0.00 0.00 34.44 4.70
517 518 0.252881 TCCCACATCTCCTTGAGGCT 60.253 55.000 0.00 0.00 34.44 4.58
518 519 0.179936 CCCACATCTCCTTGAGGCTC 59.820 60.000 7.79 7.79 34.44 4.70
519 520 1.202330 CCACATCTCCTTGAGGCTCT 58.798 55.000 16.72 0.00 34.44 4.09
520 521 1.138661 CCACATCTCCTTGAGGCTCTC 59.861 57.143 16.72 0.00 34.44 3.20
521 522 1.110442 ACATCTCCTTGAGGCTCTCG 58.890 55.000 16.72 6.36 32.35 4.04
522 523 1.110442 CATCTCCTTGAGGCTCTCGT 58.890 55.000 16.72 0.00 32.35 4.18
523 524 1.110442 ATCTCCTTGAGGCTCTCGTG 58.890 55.000 16.72 4.21 32.35 4.35
524 525 0.967887 TCTCCTTGAGGCTCTCGTGG 60.968 60.000 16.72 11.85 32.35 4.94
525 526 1.228894 TCCTTGAGGCTCTCGTGGT 60.229 57.895 16.72 0.00 32.35 4.16
526 527 1.079543 CCTTGAGGCTCTCGTGGTG 60.080 63.158 16.72 0.00 32.35 4.17
527 528 1.536073 CCTTGAGGCTCTCGTGGTGA 61.536 60.000 16.72 0.00 32.35 4.02
537 538 2.738846 CTCTCGTGGTGAAGGACAAATG 59.261 50.000 0.00 0.00 0.00 2.32
546 547 4.072131 GTGAAGGACAAATGGTTAGAGCA 58.928 43.478 0.00 0.00 0.00 4.26
558 559 2.819608 GGTTAGAGCAGGTGCATTTTCA 59.180 45.455 4.48 0.00 45.16 2.69
564 565 4.951715 AGAGCAGGTGCATTTTCATATTCA 59.048 37.500 4.48 0.00 45.16 2.57
566 567 3.792956 GCAGGTGCATTTTCATATTCACG 59.207 43.478 0.00 0.00 41.59 4.35
574 575 8.252454 GTGCATTTTCATATTCACGTTAATTCG 58.748 33.333 0.00 0.00 0.00 3.34
582 583 9.800433 TCATATTCACGTTAATTCGGTACTTTA 57.200 29.630 0.00 0.00 34.94 1.85
586 587 5.291614 TCACGTTAATTCGGTACTTTATGGC 59.708 40.000 0.00 0.00 34.94 4.40
609 611 8.040132 TGGCTCAAATAATAAATTGGGACAAAG 58.960 33.333 0.00 0.00 41.98 2.77
676 686 2.159517 AGATTTCGCAAATGACGGCTTC 60.160 45.455 0.00 0.00 0.00 3.86
685 696 4.376311 GCAAATGACGGCTTCAAACAATTC 60.376 41.667 0.00 0.00 37.92 2.17
710 721 0.731417 CACAACAGCTAGCATCTGCC 59.269 55.000 18.83 0.00 43.38 4.85
722 733 5.009410 GCTAGCATCTGCCAAAGTATTCATT 59.991 40.000 10.63 0.00 43.38 2.57
828 849 0.678950 ACTGAAATGCCCCAAAACCG 59.321 50.000 0.00 0.00 0.00 4.44
928 949 6.519382 TGCTAAGTAGCCTACTTAAACAGCAA 60.519 38.462 26.20 15.65 45.87 3.91
943 964 0.740737 AGCAAACACCAGCTTCACAC 59.259 50.000 0.00 0.00 38.01 3.82
1359 1380 1.003839 GGTGCAGATGGTGGTCGAA 60.004 57.895 0.00 0.00 0.00 3.71
1436 1457 3.312697 AGAAACTGCTTGGAACGACTTTC 59.687 43.478 0.00 0.00 0.00 2.62
1496 1517 5.921004 TTATTCTGCCAATTTTGTTGTGC 57.079 34.783 0.00 0.00 0.00 4.57
1674 1706 5.102313 GGTGTTTTGTTTTCACTCCAGAAG 58.898 41.667 0.00 0.00 33.30 2.85
1753 1785 9.082313 ACCAAGAAGAATCAGATTAACACAAAT 57.918 29.630 0.00 0.00 0.00 2.32
1766 1798 3.724508 ACACAAATTGAATCAACCGCA 57.275 38.095 0.00 0.00 0.00 5.69
1773 1805 7.861872 CACAAATTGAATCAACCGCATATATCA 59.138 33.333 0.00 0.00 0.00 2.15
1788 1820 8.961092 CCGCATATATCAAAATTCAAGAAAGTG 58.039 33.333 0.00 0.00 0.00 3.16
1806 1838 4.669206 AGTGCATTTCAATTCAACACCA 57.331 36.364 0.00 0.00 0.00 4.17
1830 1862 7.811236 CCACATGTTAGTACGAAAGAGAAGTTA 59.189 37.037 0.00 0.00 0.00 2.24
1842 1874 6.629252 CGAAAGAGAAGTTAACAGAGTTTTGC 59.371 38.462 8.61 0.00 0.00 3.68
1874 1906 9.899226 AGAAATTAACTGAAGAAAAGTATGCAC 57.101 29.630 0.00 0.00 0.00 4.57
1877 1909 4.002906 ACTGAAGAAAAGTATGCACCGA 57.997 40.909 0.00 0.00 0.00 4.69
1969 2001 1.295792 TTGTGTTGTCTTCCGTCTGC 58.704 50.000 0.00 0.00 0.00 4.26
1987 2020 3.119209 TCTGCTTCATCTGCTACTCACAG 60.119 47.826 0.00 0.00 36.44 3.66
2010 2043 7.066284 ACAGGTCTCATGCATAATTTACTCAAC 59.934 37.037 0.00 0.00 0.00 3.18
2230 2263 9.787532 TTCAAAAACTTGAAGAACTGTTAGATG 57.212 29.630 0.00 0.00 36.15 2.90
2242 2275 3.935203 ACTGTTAGATGATGGCAACGAAG 59.065 43.478 0.00 0.00 42.51 3.79
2272 2305 4.331168 GCCATATACTGCTAATACTGCTGC 59.669 45.833 0.00 0.00 33.58 5.25
2275 2308 4.679373 ATACTGCTAATACTGCTGCTGT 57.321 40.909 16.37 16.37 39.95 4.40
2299 2332 1.880271 TTGTCCGAAACGCCAATACA 58.120 45.000 0.00 0.00 0.00 2.29
2346 2380 0.038310 TCTCCTCGAGCTCACCTTCA 59.962 55.000 15.40 0.00 0.00 3.02
2357 2391 3.192844 AGCTCACCTTCAAAAGCATCATG 59.807 43.478 0.00 0.00 37.22 3.07
2362 2396 5.477637 TCACCTTCAAAAGCATCATGATTGA 59.522 36.000 5.16 4.99 36.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.269523 ACGCTTGCAAGGAGGCCA 62.270 61.111 27.10 0.00 0.00 5.36
1 2 3.435186 GACGCTTGCAAGGAGGCC 61.435 66.667 27.10 9.58 0.00 5.19
2 3 2.042831 ATGACGCTTGCAAGGAGGC 61.043 57.895 27.10 13.14 0.00 4.70
3 4 1.651240 CCATGACGCTTGCAAGGAGG 61.651 60.000 27.10 14.24 0.00 4.30
4 5 0.957395 ACCATGACGCTTGCAAGGAG 60.957 55.000 27.10 12.43 0.00 3.69
5 6 1.073025 ACCATGACGCTTGCAAGGA 59.927 52.632 27.10 4.01 0.00 3.36
6 7 1.210931 CACCATGACGCTTGCAAGG 59.789 57.895 27.10 18.79 0.00 3.61
7 8 1.210931 CCACCATGACGCTTGCAAG 59.789 57.895 22.44 22.44 0.00 4.01
8 9 0.821301 TTCCACCATGACGCTTGCAA 60.821 50.000 0.00 0.00 0.00 4.08
9 10 0.821301 TTTCCACCATGACGCTTGCA 60.821 50.000 0.00 0.00 0.00 4.08
10 11 0.387239 GTTTCCACCATGACGCTTGC 60.387 55.000 0.00 0.00 0.00 4.01
11 12 0.240945 GGTTTCCACCATGACGCTTG 59.759 55.000 0.00 0.00 43.61 4.01
12 13 0.893727 GGGTTTCCACCATGACGCTT 60.894 55.000 0.00 0.00 46.43 4.68
13 14 1.303317 GGGTTTCCACCATGACGCT 60.303 57.895 0.00 0.00 46.43 5.07
14 15 1.303317 AGGGTTTCCACCATGACGC 60.303 57.895 0.00 0.00 46.43 5.19
15 16 0.324943 AGAGGGTTTCCACCATGACG 59.675 55.000 0.00 0.00 46.43 4.35
16 17 1.630878 AGAGAGGGTTTCCACCATGAC 59.369 52.381 0.00 0.00 46.43 3.06
17 18 2.044793 AGAGAGGGTTTCCACCATGA 57.955 50.000 0.00 0.00 46.43 3.07
18 19 2.420687 GCTAGAGAGGGTTTCCACCATG 60.421 54.545 0.00 0.00 46.43 3.66
19 20 1.840635 GCTAGAGAGGGTTTCCACCAT 59.159 52.381 0.00 0.00 46.43 3.55
20 21 1.203313 AGCTAGAGAGGGTTTCCACCA 60.203 52.381 0.00 0.00 46.43 4.17
21 22 1.483004 GAGCTAGAGAGGGTTTCCACC 59.517 57.143 0.00 0.00 43.37 4.61
22 23 1.135333 CGAGCTAGAGAGGGTTTCCAC 59.865 57.143 0.00 0.00 34.83 4.02
23 24 1.272536 ACGAGCTAGAGAGGGTTTCCA 60.273 52.381 0.00 0.00 34.83 3.53
24 25 1.135333 CACGAGCTAGAGAGGGTTTCC 59.865 57.143 0.00 0.00 0.00 3.13
25 26 1.135333 CCACGAGCTAGAGAGGGTTTC 59.865 57.143 0.00 0.00 0.00 2.78
26 27 1.187087 CCACGAGCTAGAGAGGGTTT 58.813 55.000 0.00 0.00 0.00 3.27
27 28 0.039911 ACCACGAGCTAGAGAGGGTT 59.960 55.000 0.00 0.00 0.00 4.11
28 29 0.681564 CACCACGAGCTAGAGAGGGT 60.682 60.000 0.00 0.00 0.00 4.34
29 30 1.388065 CCACCACGAGCTAGAGAGGG 61.388 65.000 0.00 0.00 0.00 4.30
30 31 1.388065 CCCACCACGAGCTAGAGAGG 61.388 65.000 0.00 2.14 0.00 3.69
31 32 2.010582 GCCCACCACGAGCTAGAGAG 62.011 65.000 0.00 0.00 0.00 3.20
32 33 2.052690 GCCCACCACGAGCTAGAGA 61.053 63.158 0.00 0.00 0.00 3.10
33 34 0.752009 TAGCCCACCACGAGCTAGAG 60.752 60.000 0.00 0.00 38.06 2.43
34 35 1.035932 GTAGCCCACCACGAGCTAGA 61.036 60.000 0.00 0.00 39.66 2.43
35 36 1.437986 GTAGCCCACCACGAGCTAG 59.562 63.158 0.00 0.00 39.66 3.42
36 37 3.612251 GTAGCCCACCACGAGCTA 58.388 61.111 0.00 0.00 38.06 3.32
44 45 0.757935 TCTATCACGGGTAGCCCACC 60.758 60.000 5.12 0.00 45.83 4.61
45 46 1.272769 GATCTATCACGGGTAGCCCAC 59.727 57.143 5.12 0.00 45.83 4.61
46 47 1.629043 GATCTATCACGGGTAGCCCA 58.371 55.000 5.12 0.00 45.83 5.36
47 48 0.526662 CGATCTATCACGGGTAGCCC 59.473 60.000 5.12 0.00 41.09 5.19
48 49 0.526662 CCGATCTATCACGGGTAGCC 59.473 60.000 0.00 0.00 44.59 3.93
54 55 1.810755 TTCGATCCCGATCTATCACGG 59.189 52.381 0.00 0.00 45.10 4.94
55 56 2.742589 TCTTCGATCCCGATCTATCACG 59.257 50.000 3.35 0.00 45.10 4.35
56 57 4.768130 TTCTTCGATCCCGATCTATCAC 57.232 45.455 3.35 0.00 45.10 3.06
57 58 5.773575 CTTTTCTTCGATCCCGATCTATCA 58.226 41.667 3.35 0.00 45.10 2.15
58 59 4.623595 GCTTTTCTTCGATCCCGATCTATC 59.376 45.833 3.35 0.00 45.10 2.08
59 60 4.282195 AGCTTTTCTTCGATCCCGATCTAT 59.718 41.667 3.35 0.00 45.10 1.98
60 61 3.637229 AGCTTTTCTTCGATCCCGATCTA 59.363 43.478 3.35 0.00 45.10 1.98
61 62 2.432510 AGCTTTTCTTCGATCCCGATCT 59.567 45.455 3.35 0.00 45.10 2.75
62 63 2.827652 AGCTTTTCTTCGATCCCGATC 58.172 47.619 0.00 0.00 45.10 3.69
63 64 2.990066 AGCTTTTCTTCGATCCCGAT 57.010 45.000 0.00 0.00 45.10 4.18
64 65 3.880047 TTAGCTTTTCTTCGATCCCGA 57.120 42.857 0.00 0.00 43.96 5.14
65 66 4.372656 AGATTAGCTTTTCTTCGATCCCG 58.627 43.478 0.00 0.00 37.07 5.14
66 67 6.316390 TCAAAGATTAGCTTTTCTTCGATCCC 59.684 38.462 10.30 0.00 44.24 3.85
67 68 7.065204 AGTCAAAGATTAGCTTTTCTTCGATCC 59.935 37.037 10.30 0.00 44.24 3.36
68 69 7.969314 AGTCAAAGATTAGCTTTTCTTCGATC 58.031 34.615 10.30 2.80 44.24 3.69
69 70 7.913674 AGTCAAAGATTAGCTTTTCTTCGAT 57.086 32.000 10.30 0.00 44.24 3.59
70 71 7.307989 CCAAGTCAAAGATTAGCTTTTCTTCGA 60.308 37.037 10.30 3.78 44.24 3.71
71 72 6.798959 CCAAGTCAAAGATTAGCTTTTCTTCG 59.201 38.462 10.30 1.71 44.24 3.79
72 73 7.592903 CACCAAGTCAAAGATTAGCTTTTCTTC 59.407 37.037 10.30 1.16 44.24 2.87
73 74 7.285401 TCACCAAGTCAAAGATTAGCTTTTCTT 59.715 33.333 0.00 0.00 44.24 2.52
74 75 6.772716 TCACCAAGTCAAAGATTAGCTTTTCT 59.227 34.615 0.00 0.00 44.24 2.52
75 76 6.970484 TCACCAAGTCAAAGATTAGCTTTTC 58.030 36.000 0.00 0.00 44.24 2.29
76 77 6.515696 GCTCACCAAGTCAAAGATTAGCTTTT 60.516 38.462 0.00 0.00 44.24 2.27
78 79 4.457257 GCTCACCAAGTCAAAGATTAGCTT 59.543 41.667 0.00 0.00 38.88 3.74
79 80 4.006319 GCTCACCAAGTCAAAGATTAGCT 58.994 43.478 0.00 0.00 0.00 3.32
80 81 3.181516 CGCTCACCAAGTCAAAGATTAGC 60.182 47.826 0.00 0.00 0.00 3.09
81 82 3.181516 GCGCTCACCAAGTCAAAGATTAG 60.182 47.826 0.00 0.00 0.00 1.73
82 83 2.742053 GCGCTCACCAAGTCAAAGATTA 59.258 45.455 0.00 0.00 0.00 1.75
83 84 1.537202 GCGCTCACCAAGTCAAAGATT 59.463 47.619 0.00 0.00 0.00 2.40
84 85 1.160137 GCGCTCACCAAGTCAAAGAT 58.840 50.000 0.00 0.00 0.00 2.40
85 86 0.106708 AGCGCTCACCAAGTCAAAGA 59.893 50.000 2.64 0.00 0.00 2.52
86 87 1.795768 TAGCGCTCACCAAGTCAAAG 58.204 50.000 16.34 0.00 0.00 2.77
87 88 2.248280 TTAGCGCTCACCAAGTCAAA 57.752 45.000 16.34 0.00 0.00 2.69
88 89 2.076100 CATTAGCGCTCACCAAGTCAA 58.924 47.619 16.34 0.00 0.00 3.18
89 90 1.675714 CCATTAGCGCTCACCAAGTCA 60.676 52.381 16.34 0.00 0.00 3.41
90 91 1.009829 CCATTAGCGCTCACCAAGTC 58.990 55.000 16.34 0.00 0.00 3.01
91 92 0.324943 ACCATTAGCGCTCACCAAGT 59.675 50.000 16.34 2.00 0.00 3.16
92 93 2.205074 CTACCATTAGCGCTCACCAAG 58.795 52.381 16.34 1.73 0.00 3.61
93 94 1.742411 GCTACCATTAGCGCTCACCAA 60.742 52.381 16.34 1.93 41.50 3.67
94 95 0.179084 GCTACCATTAGCGCTCACCA 60.179 55.000 16.34 0.00 41.50 4.17
95 96 2.606275 GCTACCATTAGCGCTCACC 58.394 57.895 16.34 0.00 41.50 4.02
102 103 0.588252 CCACATGCGCTACCATTAGC 59.412 55.000 9.73 0.00 46.51 3.09
103 104 1.867233 GTCCACATGCGCTACCATTAG 59.133 52.381 9.73 0.00 0.00 1.73
104 105 1.804746 CGTCCACATGCGCTACCATTA 60.805 52.381 9.73 0.00 0.00 1.90
105 106 1.089481 CGTCCACATGCGCTACCATT 61.089 55.000 9.73 0.00 0.00 3.16
106 107 1.521457 CGTCCACATGCGCTACCAT 60.521 57.895 9.73 0.00 0.00 3.55
107 108 2.125713 CGTCCACATGCGCTACCA 60.126 61.111 9.73 0.00 0.00 3.25
108 109 2.125673 ACGTCCACATGCGCTACC 60.126 61.111 9.73 0.00 0.00 3.18
109 110 2.505498 CGACGTCCACATGCGCTAC 61.505 63.158 9.73 0.00 0.00 3.58
110 111 2.202557 CGACGTCCACATGCGCTA 60.203 61.111 9.73 0.00 0.00 4.26
111 112 3.858868 AACGACGTCCACATGCGCT 62.859 57.895 9.73 0.00 0.00 5.92
112 113 3.348967 GAACGACGTCCACATGCGC 62.349 63.158 10.58 0.00 0.00 6.09
113 114 1.674611 GAGAACGACGTCCACATGCG 61.675 60.000 10.58 0.00 0.00 4.73
114 115 0.388649 AGAGAACGACGTCCACATGC 60.389 55.000 10.58 0.00 0.00 4.06
115 116 1.986378 GAAGAGAACGACGTCCACATG 59.014 52.381 10.58 0.00 0.00 3.21
116 117 1.067776 GGAAGAGAACGACGTCCACAT 60.068 52.381 10.58 0.00 36.29 3.21
117 118 0.313043 GGAAGAGAACGACGTCCACA 59.687 55.000 10.58 0.00 36.29 4.17
118 119 0.597072 AGGAAGAGAACGACGTCCAC 59.403 55.000 10.58 1.51 38.12 4.02
119 120 1.000607 CAAGGAAGAGAACGACGTCCA 60.001 52.381 10.58 0.00 38.12 4.02
120 121 1.669211 CCAAGGAAGAGAACGACGTCC 60.669 57.143 10.58 0.00 36.46 4.79
121 122 1.268899 TCCAAGGAAGAGAACGACGTC 59.731 52.381 5.18 5.18 0.00 4.34
122 123 1.325355 TCCAAGGAAGAGAACGACGT 58.675 50.000 0.00 0.00 0.00 4.34
123 124 2.433868 TTCCAAGGAAGAGAACGACG 57.566 50.000 0.00 0.00 0.00 5.12
133 134 0.539438 ATGGCAACGCTTCCAAGGAA 60.539 50.000 0.99 0.99 42.51 3.36
134 135 0.539438 AATGGCAACGCTTCCAAGGA 60.539 50.000 0.00 0.00 42.51 3.36
135 136 0.318120 AAATGGCAACGCTTCCAAGG 59.682 50.000 0.00 0.00 42.51 3.61
136 137 1.669795 GGAAATGGCAACGCTTCCAAG 60.670 52.381 13.17 0.00 45.03 3.61
137 138 0.316841 GGAAATGGCAACGCTTCCAA 59.683 50.000 13.17 0.00 45.03 3.53
138 139 1.531739 GGGAAATGGCAACGCTTCCA 61.532 55.000 17.45 0.00 46.61 3.53
139 140 1.215382 GGGAAATGGCAACGCTTCC 59.785 57.895 10.78 10.78 44.98 3.46
140 141 1.215382 GGGGAAATGGCAACGCTTC 59.785 57.895 0.00 0.00 42.51 3.86
141 142 2.282783 GGGGGAAATGGCAACGCTT 61.283 57.895 0.00 0.00 42.51 4.68
142 143 2.679996 GGGGGAAATGGCAACGCT 60.680 61.111 0.00 0.00 42.51 5.07
143 144 2.225791 GAAGGGGGAAATGGCAACGC 62.226 60.000 0.00 0.00 42.51 4.84
144 145 1.604147 GGAAGGGGGAAATGGCAACG 61.604 60.000 0.00 0.00 42.51 4.10
145 146 1.264749 GGGAAGGGGGAAATGGCAAC 61.265 60.000 0.00 0.00 0.00 4.17
146 147 1.080170 GGGAAGGGGGAAATGGCAA 59.920 57.895 0.00 0.00 0.00 4.52
147 148 2.777146 GGGAAGGGGGAAATGGCA 59.223 61.111 0.00 0.00 0.00 4.92
148 149 1.293683 TAGGGGAAGGGGGAAATGGC 61.294 60.000 0.00 0.00 0.00 4.40
149 150 0.853530 CTAGGGGAAGGGGGAAATGG 59.146 60.000 0.00 0.00 0.00 3.16
150 151 0.186143 GCTAGGGGAAGGGGGAAATG 59.814 60.000 0.00 0.00 0.00 2.32
151 152 0.254107 TGCTAGGGGAAGGGGGAAAT 60.254 55.000 0.00 0.00 0.00 2.17
152 153 0.919289 CTGCTAGGGGAAGGGGGAAA 60.919 60.000 0.00 0.00 0.00 3.13
153 154 1.307866 CTGCTAGGGGAAGGGGGAA 60.308 63.158 0.00 0.00 0.00 3.97
154 155 2.372688 CTGCTAGGGGAAGGGGGA 59.627 66.667 0.00 0.00 0.00 4.81
155 156 3.493303 GCTGCTAGGGGAAGGGGG 61.493 72.222 0.00 0.00 0.00 5.40
156 157 3.493303 GGCTGCTAGGGGAAGGGG 61.493 72.222 0.00 0.00 0.00 4.79
157 158 2.003548 AAGGCTGCTAGGGGAAGGG 61.004 63.158 0.00 0.00 0.00 3.95
158 159 1.225704 CAAGGCTGCTAGGGGAAGG 59.774 63.158 0.00 0.00 0.00 3.46
159 160 1.225704 CCAAGGCTGCTAGGGGAAG 59.774 63.158 0.00 0.00 0.00 3.46
160 161 1.140134 AACCAAGGCTGCTAGGGGAA 61.140 55.000 0.00 0.00 0.00 3.97
161 162 1.541368 AACCAAGGCTGCTAGGGGA 60.541 57.895 0.00 0.00 0.00 4.81
162 163 1.077429 GAACCAAGGCTGCTAGGGG 60.077 63.158 0.00 0.00 0.00 4.79
163 164 0.678048 GTGAACCAAGGCTGCTAGGG 60.678 60.000 0.00 0.91 0.00 3.53
164 165 0.326264 AGTGAACCAAGGCTGCTAGG 59.674 55.000 0.00 1.72 0.00 3.02
165 166 1.002430 TGAGTGAACCAAGGCTGCTAG 59.998 52.381 0.00 0.00 0.00 3.42
166 167 1.002430 CTGAGTGAACCAAGGCTGCTA 59.998 52.381 0.00 0.00 0.00 3.49
167 168 0.250640 CTGAGTGAACCAAGGCTGCT 60.251 55.000 0.00 0.00 0.00 4.24
168 169 0.536006 ACTGAGTGAACCAAGGCTGC 60.536 55.000 0.00 0.00 0.00 5.25
169 170 1.233019 CACTGAGTGAACCAAGGCTG 58.767 55.000 6.79 0.00 35.23 4.85
170 171 0.839946 ACACTGAGTGAACCAAGGCT 59.160 50.000 20.97 0.00 36.96 4.58
171 172 3.403936 ACACTGAGTGAACCAAGGC 57.596 52.632 20.97 0.00 36.96 4.35
191 192 2.789203 CTAAACTCACCGAGCGCGC 61.789 63.158 26.66 26.66 35.83 6.86
192 193 2.158959 CCTAAACTCACCGAGCGCG 61.159 63.158 0.00 0.00 32.04 6.86
193 194 1.077089 GTCCTAAACTCACCGAGCGC 61.077 60.000 0.00 0.00 32.04 5.92
194 195 0.458025 GGTCCTAAACTCACCGAGCG 60.458 60.000 0.00 0.00 32.04 5.03
195 196 0.606604 TGGTCCTAAACTCACCGAGC 59.393 55.000 0.00 0.00 32.04 5.03
196 197 2.931320 GCTTGGTCCTAAACTCACCGAG 60.931 54.545 0.76 0.76 42.65 4.63
197 198 1.001633 GCTTGGTCCTAAACTCACCGA 59.998 52.381 0.00 0.00 32.27 4.69
198 199 1.002087 AGCTTGGTCCTAAACTCACCG 59.998 52.381 0.00 0.00 32.27 4.94
199 200 2.861147 AGCTTGGTCCTAAACTCACC 57.139 50.000 0.00 0.00 0.00 4.02
200 201 4.221041 AGAGTAGCTTGGTCCTAAACTCAC 59.779 45.833 9.50 0.00 0.00 3.51
201 202 4.417437 AGAGTAGCTTGGTCCTAAACTCA 58.583 43.478 9.50 0.00 0.00 3.41
202 203 5.408880 AAGAGTAGCTTGGTCCTAAACTC 57.591 43.478 0.00 0.00 34.93 3.01
203 204 5.513267 CCAAAGAGTAGCTTGGTCCTAAACT 60.513 44.000 0.00 0.00 36.80 2.66
204 205 4.695928 CCAAAGAGTAGCTTGGTCCTAAAC 59.304 45.833 0.00 0.00 36.80 2.01
205 206 4.349930 ACCAAAGAGTAGCTTGGTCCTAAA 59.650 41.667 0.00 0.00 34.83 1.85
206 207 3.908103 ACCAAAGAGTAGCTTGGTCCTAA 59.092 43.478 0.00 0.00 34.83 2.69
207 208 3.260884 CACCAAAGAGTAGCTTGGTCCTA 59.739 47.826 2.42 0.00 36.50 2.94
208 209 2.039084 CACCAAAGAGTAGCTTGGTCCT 59.961 50.000 2.42 0.00 36.50 3.85
209 210 2.224548 ACACCAAAGAGTAGCTTGGTCC 60.225 50.000 2.42 0.00 36.50 4.46
210 211 2.808543 CACACCAAAGAGTAGCTTGGTC 59.191 50.000 2.42 0.00 36.50 4.02
211 212 2.851195 CACACCAAAGAGTAGCTTGGT 58.149 47.619 0.00 0.00 38.03 3.67
212 213 1.537202 GCACACCAAAGAGTAGCTTGG 59.463 52.381 0.00 0.00 36.80 3.61
213 214 2.221169 TGCACACCAAAGAGTAGCTTG 58.779 47.619 0.00 0.00 36.80 4.01
214 215 2.638480 TGCACACCAAAGAGTAGCTT 57.362 45.000 0.00 0.00 38.88 3.74
215 216 2.430465 CATGCACACCAAAGAGTAGCT 58.570 47.619 0.00 0.00 0.00 3.32
216 217 1.135575 GCATGCACACCAAAGAGTAGC 60.136 52.381 14.21 0.00 0.00 3.58
217 218 2.417933 GAGCATGCACACCAAAGAGTAG 59.582 50.000 21.98 0.00 0.00 2.57
218 219 2.224499 TGAGCATGCACACCAAAGAGTA 60.224 45.455 21.98 0.00 0.00 2.59
219 220 1.242076 GAGCATGCACACCAAAGAGT 58.758 50.000 21.98 0.00 0.00 3.24
220 221 1.241165 TGAGCATGCACACCAAAGAG 58.759 50.000 21.98 0.00 0.00 2.85
221 222 1.542472 CATGAGCATGCACACCAAAGA 59.458 47.619 20.34 0.00 31.39 2.52
222 223 1.542472 TCATGAGCATGCACACCAAAG 59.458 47.619 20.34 8.21 38.65 2.77
223 224 1.618487 TCATGAGCATGCACACCAAA 58.382 45.000 20.34 3.45 38.65 3.28
224 225 1.746787 GATCATGAGCATGCACACCAA 59.253 47.619 20.34 8.95 38.65 3.67
225 226 1.385528 GATCATGAGCATGCACACCA 58.614 50.000 20.34 11.74 38.65 4.17
226 227 0.666913 GGATCATGAGCATGCACACC 59.333 55.000 20.34 12.79 38.65 4.16
227 228 1.602851 GAGGATCATGAGCATGCACAC 59.397 52.381 20.34 10.92 38.65 3.82
228 229 1.476291 GGAGGATCATGAGCATGCACA 60.476 52.381 20.21 20.21 38.65 4.57
229 230 1.236628 GGAGGATCATGAGCATGCAC 58.763 55.000 21.98 15.08 38.65 4.57
230 231 0.109913 GGGAGGATCATGAGCATGCA 59.890 55.000 21.98 0.00 38.65 3.96
231 232 0.109913 TGGGAGGATCATGAGCATGC 59.890 55.000 13.85 10.51 38.65 4.06
232 233 2.437413 CATGGGAGGATCATGAGCATG 58.563 52.381 13.85 3.61 43.25 4.06
233 234 1.354705 CCATGGGAGGATCATGAGCAT 59.645 52.381 13.85 5.32 43.25 3.79
234 235 0.769247 CCATGGGAGGATCATGAGCA 59.231 55.000 13.85 0.00 43.25 4.26
235 236 0.608582 GCCATGGGAGGATCATGAGC 60.609 60.000 15.13 1.26 43.25 4.26
236 237 1.065647 AGCCATGGGAGGATCATGAG 58.934 55.000 15.13 0.00 43.25 2.90
237 238 1.980765 GTAGCCATGGGAGGATCATGA 59.019 52.381 15.13 0.00 43.25 3.07
238 239 1.004044 GGTAGCCATGGGAGGATCATG 59.996 57.143 15.13 0.00 41.04 3.07
239 240 1.366319 GGTAGCCATGGGAGGATCAT 58.634 55.000 15.13 0.00 36.25 2.45
240 241 1.121407 CGGTAGCCATGGGAGGATCA 61.121 60.000 15.13 0.00 36.25 2.92
241 242 1.122019 ACGGTAGCCATGGGAGGATC 61.122 60.000 15.13 0.00 0.00 3.36
242 243 0.694444 AACGGTAGCCATGGGAGGAT 60.694 55.000 15.13 0.00 0.00 3.24
243 244 1.306654 AACGGTAGCCATGGGAGGA 60.307 57.895 15.13 0.00 0.00 3.71
244 245 1.153168 CAACGGTAGCCATGGGAGG 60.153 63.158 15.13 0.00 0.00 4.30
245 246 0.744414 CACAACGGTAGCCATGGGAG 60.744 60.000 15.13 0.00 0.00 4.30
246 247 1.298340 CACAACGGTAGCCATGGGA 59.702 57.895 15.13 0.00 0.00 4.37
247 248 0.608035 AACACAACGGTAGCCATGGG 60.608 55.000 15.13 0.00 0.00 4.00
248 249 0.521291 CAACACAACGGTAGCCATGG 59.479 55.000 7.63 7.63 0.00 3.66
249 250 0.109781 GCAACACAACGGTAGCCATG 60.110 55.000 0.00 0.00 0.00 3.66
250 251 1.573829 CGCAACACAACGGTAGCCAT 61.574 55.000 0.00 0.00 0.00 4.40
251 252 2.248135 CGCAACACAACGGTAGCCA 61.248 57.895 0.00 0.00 0.00 4.75
252 253 2.554272 CGCAACACAACGGTAGCC 59.446 61.111 0.00 0.00 0.00 3.93
253 254 2.554272 CCGCAACACAACGGTAGC 59.446 61.111 0.00 0.00 44.46 3.58
259 260 3.579626 GAGCTCGCCGCAACACAAC 62.580 63.158 0.00 0.00 42.61 3.32
260 261 3.345808 GAGCTCGCCGCAACACAA 61.346 61.111 0.00 0.00 42.61 3.33
274 275 4.767255 CCACCAGGAGCACGGAGC 62.767 72.222 0.00 0.00 46.19 4.70
275 276 2.883828 AACCACCAGGAGCACGGAG 61.884 63.158 0.00 0.00 38.69 4.63
276 277 2.847234 AACCACCAGGAGCACGGA 60.847 61.111 0.00 0.00 38.69 4.69
277 278 2.669569 CAACCACCAGGAGCACGG 60.670 66.667 0.00 0.00 38.69 4.94
278 279 2.111043 ACAACCACCAGGAGCACG 59.889 61.111 0.00 0.00 38.69 5.34
279 280 1.898574 CCACAACCACCAGGAGCAC 60.899 63.158 0.00 0.00 38.69 4.40
280 281 1.932156 AACCACAACCACCAGGAGCA 61.932 55.000 0.00 0.00 38.69 4.26
281 282 1.152756 AACCACAACCACCAGGAGC 60.153 57.895 0.00 0.00 38.69 4.70
282 283 0.182537 TGAACCACAACCACCAGGAG 59.817 55.000 0.00 0.00 38.69 3.69
283 284 0.850100 ATGAACCACAACCACCAGGA 59.150 50.000 0.00 0.00 38.69 3.86
284 285 1.202927 AGATGAACCACAACCACCAGG 60.203 52.381 0.00 0.00 42.21 4.45
285 286 2.276732 AGATGAACCACAACCACCAG 57.723 50.000 0.00 0.00 0.00 4.00
286 287 2.692557 CAAAGATGAACCACAACCACCA 59.307 45.455 0.00 0.00 0.00 4.17
287 288 2.545742 GCAAAGATGAACCACAACCACC 60.546 50.000 0.00 0.00 0.00 4.61
288 289 2.362077 AGCAAAGATGAACCACAACCAC 59.638 45.455 0.00 0.00 0.00 4.16
289 290 2.665165 AGCAAAGATGAACCACAACCA 58.335 42.857 0.00 0.00 0.00 3.67
290 291 3.733443 AAGCAAAGATGAACCACAACC 57.267 42.857 0.00 0.00 0.00 3.77
291 292 8.863049 CATTATTAAGCAAAGATGAACCACAAC 58.137 33.333 0.00 0.00 0.00 3.32
292 293 8.801299 TCATTATTAAGCAAAGATGAACCACAA 58.199 29.630 0.00 0.00 0.00 3.33
293 294 8.243426 GTCATTATTAAGCAAAGATGAACCACA 58.757 33.333 0.00 0.00 30.07 4.17
294 295 7.429340 CGTCATTATTAAGCAAAGATGAACCAC 59.571 37.037 0.00 0.00 30.07 4.16
295 296 7.120579 ACGTCATTATTAAGCAAAGATGAACCA 59.879 33.333 0.00 0.00 30.07 3.67
296 297 7.472543 ACGTCATTATTAAGCAAAGATGAACC 58.527 34.615 0.00 0.00 30.07 3.62
297 298 9.982291 TTACGTCATTATTAAGCAAAGATGAAC 57.018 29.630 0.00 0.00 30.07 3.18
299 300 9.594478 TCTTACGTCATTATTAAGCAAAGATGA 57.406 29.630 0.00 0.00 0.00 2.92
302 303 8.335356 GCATCTTACGTCATTATTAAGCAAAGA 58.665 33.333 0.00 0.00 0.00 2.52
303 304 7.587757 GGCATCTTACGTCATTATTAAGCAAAG 59.412 37.037 0.00 0.00 0.00 2.77
304 305 7.282224 AGGCATCTTACGTCATTATTAAGCAAA 59.718 33.333 0.00 0.00 0.00 3.68
305 306 6.765989 AGGCATCTTACGTCATTATTAAGCAA 59.234 34.615 0.00 0.00 0.00 3.91
306 307 6.288294 AGGCATCTTACGTCATTATTAAGCA 58.712 36.000 0.00 0.00 0.00 3.91
307 308 6.128526 GGAGGCATCTTACGTCATTATTAAGC 60.129 42.308 0.00 0.00 0.00 3.09
308 309 6.369065 GGGAGGCATCTTACGTCATTATTAAG 59.631 42.308 0.00 0.00 0.00 1.85
309 310 6.228258 GGGAGGCATCTTACGTCATTATTAA 58.772 40.000 0.00 0.00 0.00 1.40
310 311 5.279809 GGGGAGGCATCTTACGTCATTATTA 60.280 44.000 0.00 0.00 0.00 0.98
311 312 4.505039 GGGGAGGCATCTTACGTCATTATT 60.505 45.833 0.00 0.00 0.00 1.40
312 313 3.008049 GGGGAGGCATCTTACGTCATTAT 59.992 47.826 0.00 0.00 0.00 1.28
313 314 2.367567 GGGGAGGCATCTTACGTCATTA 59.632 50.000 0.00 0.00 0.00 1.90
314 315 1.141053 GGGGAGGCATCTTACGTCATT 59.859 52.381 0.00 0.00 0.00 2.57
315 316 0.759346 GGGGAGGCATCTTACGTCAT 59.241 55.000 0.00 0.00 0.00 3.06
316 317 0.616395 TGGGGAGGCATCTTACGTCA 60.616 55.000 0.00 0.00 0.00 4.35
317 318 0.539986 TTGGGGAGGCATCTTACGTC 59.460 55.000 0.00 0.00 0.00 4.34
318 319 0.252197 GTTGGGGAGGCATCTTACGT 59.748 55.000 0.00 0.00 0.00 3.57
319 320 0.251916 TGTTGGGGAGGCATCTTACG 59.748 55.000 0.00 0.00 0.00 3.18
320 321 2.689983 CAATGTTGGGGAGGCATCTTAC 59.310 50.000 0.00 0.00 0.00 2.34
321 322 2.949963 GCAATGTTGGGGAGGCATCTTA 60.950 50.000 0.00 0.00 0.00 2.10
322 323 1.856629 CAATGTTGGGGAGGCATCTT 58.143 50.000 0.00 0.00 0.00 2.40
323 324 0.685458 GCAATGTTGGGGAGGCATCT 60.685 55.000 0.00 0.00 0.00 2.90
324 325 0.685458 AGCAATGTTGGGGAGGCATC 60.685 55.000 0.00 0.00 0.00 3.91
325 326 0.630673 TAGCAATGTTGGGGAGGCAT 59.369 50.000 0.00 0.00 0.00 4.40
326 327 0.034186 CTAGCAATGTTGGGGAGGCA 60.034 55.000 0.00 0.00 0.00 4.75
327 328 0.034089 ACTAGCAATGTTGGGGAGGC 60.034 55.000 0.00 0.00 0.00 4.70
328 329 1.743772 CGACTAGCAATGTTGGGGAGG 60.744 57.143 0.00 0.00 0.00 4.30
329 330 1.066143 ACGACTAGCAATGTTGGGGAG 60.066 52.381 0.00 0.00 0.00 4.30
330 331 0.981183 ACGACTAGCAATGTTGGGGA 59.019 50.000 0.00 0.00 0.00 4.81
331 332 1.821216 AACGACTAGCAATGTTGGGG 58.179 50.000 0.00 0.00 0.00 4.96
332 333 2.811431 TGAAACGACTAGCAATGTTGGG 59.189 45.455 0.00 0.00 0.00 4.12
333 334 4.481930 TTGAAACGACTAGCAATGTTGG 57.518 40.909 0.00 0.00 0.00 3.77
334 335 6.991485 AATTTGAAACGACTAGCAATGTTG 57.009 33.333 0.00 0.00 0.00 3.33
335 336 6.640907 GGAAATTTGAAACGACTAGCAATGTT 59.359 34.615 0.00 0.00 0.00 2.71
336 337 6.149633 GGAAATTTGAAACGACTAGCAATGT 58.850 36.000 0.00 0.00 0.00 2.71
337 338 6.088085 GTGGAAATTTGAAACGACTAGCAATG 59.912 38.462 0.00 0.00 0.00 2.82
338 339 6.149633 GTGGAAATTTGAAACGACTAGCAAT 58.850 36.000 0.00 0.00 0.00 3.56
339 340 5.516090 GTGGAAATTTGAAACGACTAGCAA 58.484 37.500 0.00 0.00 0.00 3.91
340 341 4.319190 CGTGGAAATTTGAAACGACTAGCA 60.319 41.667 9.99 0.00 36.38 3.49
341 342 4.148891 CGTGGAAATTTGAAACGACTAGC 58.851 43.478 9.99 0.00 36.38 3.42
342 343 4.708601 CCGTGGAAATTTGAAACGACTAG 58.291 43.478 14.95 0.00 36.38 2.57
343 344 3.058777 GCCGTGGAAATTTGAAACGACTA 60.059 43.478 14.95 0.00 36.38 2.59
344 345 2.287368 GCCGTGGAAATTTGAAACGACT 60.287 45.455 14.95 0.00 36.38 4.18
345 346 2.048498 GCCGTGGAAATTTGAAACGAC 58.952 47.619 14.95 3.81 36.38 4.34
346 347 1.334239 CGCCGTGGAAATTTGAAACGA 60.334 47.619 14.95 0.00 36.38 3.85
347 348 1.049251 CGCCGTGGAAATTTGAAACG 58.951 50.000 0.00 2.72 0.00 3.60
348 349 1.001158 TCCGCCGTGGAAATTTGAAAC 60.001 47.619 0.00 0.00 46.38 2.78
349 350 1.319541 TCCGCCGTGGAAATTTGAAA 58.680 45.000 0.00 0.00 46.38 2.69
350 351 3.022940 TCCGCCGTGGAAATTTGAA 57.977 47.368 0.00 0.00 46.38 2.69
351 352 4.802678 TCCGCCGTGGAAATTTGA 57.197 50.000 0.00 0.00 46.38 2.69
359 360 4.760047 CCAGGAGTTCCGCCGTGG 62.760 72.222 0.00 0.00 42.08 4.94
360 361 3.934391 GACCAGGAGTTCCGCCGTG 62.934 68.421 0.00 0.00 42.08 4.94
361 362 3.692406 GACCAGGAGTTCCGCCGT 61.692 66.667 0.00 0.00 42.08 5.68
362 363 3.234630 TTGACCAGGAGTTCCGCCG 62.235 63.158 0.00 0.00 42.08 6.46
363 364 1.376037 CTTGACCAGGAGTTCCGCC 60.376 63.158 0.00 0.00 42.08 6.13
364 365 4.285851 CTTGACCAGGAGTTCCGC 57.714 61.111 0.00 0.00 42.08 5.54
373 374 1.333619 CCAAACACGAACCTTGACCAG 59.666 52.381 0.00 0.00 0.00 4.00
374 375 1.384525 CCAAACACGAACCTTGACCA 58.615 50.000 0.00 0.00 0.00 4.02
375 376 0.030235 GCCAAACACGAACCTTGACC 59.970 55.000 0.00 0.00 0.00 4.02
376 377 1.021968 AGCCAAACACGAACCTTGAC 58.978 50.000 0.00 0.00 0.00 3.18
377 378 2.623878 TAGCCAAACACGAACCTTGA 57.376 45.000 0.00 0.00 0.00 3.02
378 379 4.214545 TGTTATAGCCAAACACGAACCTTG 59.785 41.667 0.00 0.00 32.07 3.61
379 380 4.214758 GTGTTATAGCCAAACACGAACCTT 59.785 41.667 9.85 0.00 45.02 3.50
380 381 3.749609 GTGTTATAGCCAAACACGAACCT 59.250 43.478 9.85 0.00 45.02 3.50
381 382 4.074466 GTGTTATAGCCAAACACGAACC 57.926 45.455 9.85 0.00 45.02 3.62
387 388 7.176515 ACAATCAATGAGTGTTATAGCCAAACA 59.823 33.333 10.78 0.00 37.61 2.83
388 389 7.538575 ACAATCAATGAGTGTTATAGCCAAAC 58.461 34.615 10.78 0.00 37.61 2.93
389 390 7.701539 ACAATCAATGAGTGTTATAGCCAAA 57.298 32.000 10.78 0.00 37.61 3.28
390 391 8.978874 ATACAATCAATGAGTGTTATAGCCAA 57.021 30.769 21.38 1.43 37.61 4.52
391 392 8.839343 CAATACAATCAATGAGTGTTATAGCCA 58.161 33.333 21.38 2.18 37.61 4.75
392 393 7.805071 GCAATACAATCAATGAGTGTTATAGCC 59.195 37.037 21.38 3.00 37.61 3.93
393 394 8.344831 TGCAATACAATCAATGAGTGTTATAGC 58.655 33.333 21.38 18.58 37.61 2.97
394 395 9.655769 GTGCAATACAATCAATGAGTGTTATAG 57.344 33.333 21.38 10.43 37.61 1.31
395 396 8.620416 GGTGCAATACAATCAATGAGTGTTATA 58.380 33.333 21.38 4.44 37.61 0.98
396 397 7.483307 GGTGCAATACAATCAATGAGTGTTAT 58.517 34.615 21.38 8.27 37.61 1.89
397 398 6.403092 CGGTGCAATACAATCAATGAGTGTTA 60.403 38.462 21.38 8.29 37.61 2.41
398 399 5.619757 CGGTGCAATACAATCAATGAGTGTT 60.620 40.000 21.38 7.11 37.61 3.32
399 400 4.142622 CGGTGCAATACAATCAATGAGTGT 60.143 41.667 20.13 20.13 43.30 3.55
400 401 4.142622 ACGGTGCAATACAATCAATGAGTG 60.143 41.667 9.29 9.29 33.62 3.51
401 402 4.009675 ACGGTGCAATACAATCAATGAGT 58.990 39.130 0.00 0.00 0.00 3.41
402 403 4.345288 CACGGTGCAATACAATCAATGAG 58.655 43.478 0.00 0.00 0.00 2.90
403 404 3.128415 CCACGGTGCAATACAATCAATGA 59.872 43.478 1.68 0.00 0.00 2.57
404 405 3.437428 CCACGGTGCAATACAATCAATG 58.563 45.455 1.68 0.00 0.00 2.82
405 406 2.426738 CCCACGGTGCAATACAATCAAT 59.573 45.455 1.68 0.00 0.00 2.57
406 407 1.815613 CCCACGGTGCAATACAATCAA 59.184 47.619 1.68 0.00 0.00 2.57
407 408 1.458398 CCCACGGTGCAATACAATCA 58.542 50.000 1.68 0.00 0.00 2.57
408 409 0.738389 CCCCACGGTGCAATACAATC 59.262 55.000 1.68 0.00 0.00 2.67
409 410 0.039035 ACCCCACGGTGCAATACAAT 59.961 50.000 1.68 0.00 42.48 2.71
410 411 0.178987 AACCCCACGGTGCAATACAA 60.179 50.000 1.68 0.00 43.71 2.41
411 412 0.606944 GAACCCCACGGTGCAATACA 60.607 55.000 1.68 0.00 43.71 2.29
412 413 1.641123 CGAACCCCACGGTGCAATAC 61.641 60.000 1.68 0.00 43.71 1.89
413 414 1.376166 CGAACCCCACGGTGCAATA 60.376 57.895 1.68 0.00 43.71 1.90
414 415 2.478335 ATCGAACCCCACGGTGCAAT 62.478 55.000 1.68 0.00 43.71 3.56
415 416 1.828461 TATCGAACCCCACGGTGCAA 61.828 55.000 1.68 0.00 43.71 4.08
416 417 2.284276 TATCGAACCCCACGGTGCA 61.284 57.895 1.68 0.00 43.71 4.57
417 418 1.812507 GTATCGAACCCCACGGTGC 60.813 63.158 1.68 0.00 43.71 5.01
418 419 1.517694 CGTATCGAACCCCACGGTG 60.518 63.158 0.00 0.00 43.71 4.94
420 421 2.584143 GCGTATCGAACCCCACGG 60.584 66.667 0.00 0.00 35.04 4.94
421 422 1.227147 ATGCGTATCGAACCCCACG 60.227 57.895 0.00 0.00 37.45 4.94
422 423 1.772063 GCATGCGTATCGAACCCCAC 61.772 60.000 0.00 0.00 0.00 4.61
423 424 1.522806 GCATGCGTATCGAACCCCA 60.523 57.895 0.00 0.00 0.00 4.96
424 425 2.251642 GGCATGCGTATCGAACCCC 61.252 63.158 12.44 0.00 0.00 4.95
425 426 2.594962 CGGCATGCGTATCGAACCC 61.595 63.158 12.44 0.00 0.00 4.11
426 427 2.594962 CCGGCATGCGTATCGAACC 61.595 63.158 12.44 0.00 0.00 3.62
427 428 1.881252 ACCGGCATGCGTATCGAAC 60.881 57.895 12.44 0.00 0.00 3.95
428 429 1.880796 CACCGGCATGCGTATCGAA 60.881 57.895 12.44 0.00 0.00 3.71
429 430 2.279186 CACCGGCATGCGTATCGA 60.279 61.111 12.44 0.00 0.00 3.59
430 431 4.000557 GCACCGGCATGCGTATCG 62.001 66.667 12.44 9.39 40.72 2.92
440 441 3.788766 CTAACGCACTGCACCGGC 61.789 66.667 0.00 0.00 41.68 6.13
441 442 3.118454 CCTAACGCACTGCACCGG 61.118 66.667 0.00 0.00 0.00 5.28
442 443 3.788766 GCCTAACGCACTGCACCG 61.789 66.667 1.11 0.00 37.47 4.94
443 444 2.358737 AGCCTAACGCACTGCACC 60.359 61.111 1.11 0.00 41.38 5.01
444 445 2.863153 CAGCCTAACGCACTGCAC 59.137 61.111 1.11 0.00 41.38 4.57
447 448 1.230635 ACAAGCAGCCTAACGCACTG 61.231 55.000 0.00 0.00 41.38 3.66
448 449 0.320374 TACAAGCAGCCTAACGCACT 59.680 50.000 0.00 0.00 41.38 4.40
449 450 1.153353 TTACAAGCAGCCTAACGCAC 58.847 50.000 0.00 0.00 41.38 5.34
450 451 1.804151 CTTTACAAGCAGCCTAACGCA 59.196 47.619 0.00 0.00 41.38 5.24
451 452 1.804748 ACTTTACAAGCAGCCTAACGC 59.195 47.619 0.00 0.00 37.98 4.84
452 453 3.326747 AGACTTTACAAGCAGCCTAACG 58.673 45.455 0.00 0.00 0.00 3.18
453 454 4.083271 CCAAGACTTTACAAGCAGCCTAAC 60.083 45.833 0.00 0.00 0.00 2.34
454 455 4.072131 CCAAGACTTTACAAGCAGCCTAA 58.928 43.478 0.00 0.00 0.00 2.69
455 456 3.072476 ACCAAGACTTTACAAGCAGCCTA 59.928 43.478 0.00 0.00 0.00 3.93
456 457 2.158608 ACCAAGACTTTACAAGCAGCCT 60.159 45.455 0.00 0.00 0.00 4.58
457 458 2.230660 ACCAAGACTTTACAAGCAGCC 58.769 47.619 0.00 0.00 0.00 4.85
458 459 5.048713 ACAATACCAAGACTTTACAAGCAGC 60.049 40.000 0.00 0.00 0.00 5.25
459 460 6.204688 TCACAATACCAAGACTTTACAAGCAG 59.795 38.462 0.00 0.00 0.00 4.24
460 461 6.058833 TCACAATACCAAGACTTTACAAGCA 58.941 36.000 0.00 0.00 0.00 3.91
461 462 6.554334 TCACAATACCAAGACTTTACAAGC 57.446 37.500 0.00 0.00 0.00 4.01
462 463 7.148239 GGGATCACAATACCAAGACTTTACAAG 60.148 40.741 0.00 0.00 35.69 3.16
463 464 6.657541 GGGATCACAATACCAAGACTTTACAA 59.342 38.462 0.00 0.00 35.69 2.41
464 465 6.012858 AGGGATCACAATACCAAGACTTTACA 60.013 38.462 0.00 0.00 38.53 2.41
465 466 6.415573 AGGGATCACAATACCAAGACTTTAC 58.584 40.000 0.00 0.00 38.53 2.01
466 467 6.629515 CGAGGGATCACAATACCAAGACTTTA 60.630 42.308 0.00 0.00 38.53 1.85
467 468 5.501156 GAGGGATCACAATACCAAGACTTT 58.499 41.667 0.00 0.00 38.53 2.66
468 469 4.383118 CGAGGGATCACAATACCAAGACTT 60.383 45.833 0.00 0.00 38.53 3.01
469 470 3.133003 CGAGGGATCACAATACCAAGACT 59.867 47.826 0.00 0.00 38.53 3.24
470 471 3.132289 TCGAGGGATCACAATACCAAGAC 59.868 47.826 0.00 0.00 38.53 3.01
471 472 3.132289 GTCGAGGGATCACAATACCAAGA 59.868 47.826 0.00 0.00 38.53 3.02
472 473 3.458189 GTCGAGGGATCACAATACCAAG 58.542 50.000 0.00 0.00 38.53 3.61
473 474 2.159156 CGTCGAGGGATCACAATACCAA 60.159 50.000 0.00 0.00 38.53 3.67
474 475 1.407618 CGTCGAGGGATCACAATACCA 59.592 52.381 0.00 0.00 38.53 3.25
475 476 1.679680 TCGTCGAGGGATCACAATACC 59.320 52.381 5.12 0.00 35.89 2.73
476 477 2.098607 TGTCGTCGAGGGATCACAATAC 59.901 50.000 5.12 0.00 0.00 1.89
477 478 2.371306 TGTCGTCGAGGGATCACAATA 58.629 47.619 5.12 0.00 0.00 1.90
478 479 1.182667 TGTCGTCGAGGGATCACAAT 58.817 50.000 5.12 0.00 0.00 2.71
479 480 1.134367 GATGTCGTCGAGGGATCACAA 59.866 52.381 5.12 0.00 0.00 3.33
480 481 0.738975 GATGTCGTCGAGGGATCACA 59.261 55.000 5.12 2.61 0.00 3.58
481 482 0.030908 GGATGTCGTCGAGGGATCAC 59.969 60.000 5.12 0.00 0.00 3.06
482 483 1.107538 GGGATGTCGTCGAGGGATCA 61.108 60.000 5.12 3.52 0.00 2.92
483 484 1.107538 TGGGATGTCGTCGAGGGATC 61.108 60.000 5.12 7.28 0.00 3.36
484 485 1.076265 TGGGATGTCGTCGAGGGAT 60.076 57.895 5.12 0.00 0.00 3.85
485 486 2.050350 GTGGGATGTCGTCGAGGGA 61.050 63.158 5.12 0.00 0.00 4.20
486 487 1.676678 ATGTGGGATGTCGTCGAGGG 61.677 60.000 5.12 0.00 0.00 4.30
487 488 0.249073 GATGTGGGATGTCGTCGAGG 60.249 60.000 0.00 0.00 0.00 4.63
488 489 0.741326 AGATGTGGGATGTCGTCGAG 59.259 55.000 0.00 0.00 0.00 4.04
489 490 0.738975 GAGATGTGGGATGTCGTCGA 59.261 55.000 0.00 0.00 0.00 4.20
490 491 0.249073 GGAGATGTGGGATGTCGTCG 60.249 60.000 0.00 0.00 0.00 5.12
491 492 1.115467 AGGAGATGTGGGATGTCGTC 58.885 55.000 0.00 0.00 0.00 4.20
492 493 1.208052 CAAGGAGATGTGGGATGTCGT 59.792 52.381 0.00 0.00 0.00 4.34
493 494 1.482182 TCAAGGAGATGTGGGATGTCG 59.518 52.381 0.00 0.00 0.00 4.35
494 495 2.158842 CCTCAAGGAGATGTGGGATGTC 60.159 54.545 0.00 0.00 37.39 3.06
495 496 1.842562 CCTCAAGGAGATGTGGGATGT 59.157 52.381 0.00 0.00 37.39 3.06
496 497 1.476471 GCCTCAAGGAGATGTGGGATG 60.476 57.143 0.00 0.00 37.39 3.51
497 498 0.842635 GCCTCAAGGAGATGTGGGAT 59.157 55.000 0.00 0.00 37.39 3.85
498 499 0.252881 AGCCTCAAGGAGATGTGGGA 60.253 55.000 0.00 0.00 37.39 4.37
499 500 0.179936 GAGCCTCAAGGAGATGTGGG 59.820 60.000 0.00 0.00 37.39 4.61
500 501 1.138661 GAGAGCCTCAAGGAGATGTGG 59.861 57.143 0.00 0.00 37.39 4.17
501 502 1.202394 CGAGAGCCTCAAGGAGATGTG 60.202 57.143 0.00 0.00 37.39 3.21
502 503 1.110442 CGAGAGCCTCAAGGAGATGT 58.890 55.000 0.00 0.00 37.39 3.06
503 504 1.110442 ACGAGAGCCTCAAGGAGATG 58.890 55.000 0.00 0.00 37.39 2.90
504 505 1.110442 CACGAGAGCCTCAAGGAGAT 58.890 55.000 0.00 0.00 37.39 2.75
505 506 0.967887 CCACGAGAGCCTCAAGGAGA 60.968 60.000 0.00 0.00 37.39 3.71
506 507 1.254284 ACCACGAGAGCCTCAAGGAG 61.254 60.000 0.00 0.00 37.39 3.69
507 508 1.228894 ACCACGAGAGCCTCAAGGA 60.229 57.895 0.00 0.00 37.39 3.36
508 509 1.079543 CACCACGAGAGCCTCAAGG 60.080 63.158 0.00 0.00 38.53 3.61
509 510 0.318441 TTCACCACGAGAGCCTCAAG 59.682 55.000 0.00 0.00 0.00 3.02
510 511 0.318441 CTTCACCACGAGAGCCTCAA 59.682 55.000 0.00 0.00 0.00 3.02
511 512 1.536073 CCTTCACCACGAGAGCCTCA 61.536 60.000 0.00 0.00 0.00 3.86
512 513 1.216710 CCTTCACCACGAGAGCCTC 59.783 63.158 0.00 0.00 0.00 4.70
513 514 1.228894 TCCTTCACCACGAGAGCCT 60.229 57.895 0.00 0.00 0.00 4.58
514 515 1.079750 GTCCTTCACCACGAGAGCC 60.080 63.158 0.00 0.00 0.00 4.70
515 516 0.033504 TTGTCCTTCACCACGAGAGC 59.966 55.000 0.00 0.00 0.00 4.09
516 517 2.526304 TTTGTCCTTCACCACGAGAG 57.474 50.000 0.00 0.00 0.00 3.20
517 518 2.549992 CCATTTGTCCTTCACCACGAGA 60.550 50.000 0.00 0.00 0.00 4.04
518 519 1.806542 CCATTTGTCCTTCACCACGAG 59.193 52.381 0.00 0.00 0.00 4.18
519 520 1.142060 ACCATTTGTCCTTCACCACGA 59.858 47.619 0.00 0.00 0.00 4.35
520 521 1.604604 ACCATTTGTCCTTCACCACG 58.395 50.000 0.00 0.00 0.00 4.94
521 522 4.394729 TCTAACCATTTGTCCTTCACCAC 58.605 43.478 0.00 0.00 0.00 4.16
522 523 4.651778 CTCTAACCATTTGTCCTTCACCA 58.348 43.478 0.00 0.00 0.00 4.17
523 524 3.440522 GCTCTAACCATTTGTCCTTCACC 59.559 47.826 0.00 0.00 0.00 4.02
524 525 4.072131 TGCTCTAACCATTTGTCCTTCAC 58.928 43.478 0.00 0.00 0.00 3.18
525 526 4.326826 CTGCTCTAACCATTTGTCCTTCA 58.673 43.478 0.00 0.00 0.00 3.02
526 527 3.691609 CCTGCTCTAACCATTTGTCCTTC 59.308 47.826 0.00 0.00 0.00 3.46
527 528 3.074538 ACCTGCTCTAACCATTTGTCCTT 59.925 43.478 0.00 0.00 0.00 3.36
537 538 2.819608 TGAAAATGCACCTGCTCTAACC 59.180 45.455 0.00 0.00 42.66 2.85
546 547 5.643379 AACGTGAATATGAAAATGCACCT 57.357 34.783 0.00 0.00 32.48 4.00
564 565 5.422145 AGCCATAAAGTACCGAATTAACGT 58.578 37.500 0.00 0.00 0.00 3.99
566 567 6.913873 TGAGCCATAAAGTACCGAATTAAC 57.086 37.500 0.00 0.00 0.00 2.01
582 583 7.673641 TGTCCCAATTTATTATTTGAGCCAT 57.326 32.000 0.00 0.00 0.00 4.40
609 611 3.578688 CTTTGGCAATGGAGCAACTAAC 58.421 45.455 0.00 0.00 35.83 2.34
611 613 1.545582 GCTTTGGCAATGGAGCAACTA 59.454 47.619 15.59 0.00 38.54 2.24
676 686 7.878477 AGCTGTTGTGATATTGAATTGTTTG 57.122 32.000 0.00 0.00 0.00 2.93
685 696 5.560375 GCAGATGCTAGCTGTTGTGATATTG 60.560 44.000 17.23 3.02 38.21 1.90
743 754 0.597377 GAAGCGGCCTGTGGTTTTTG 60.597 55.000 0.00 0.00 0.00 2.44
797 813 2.789208 CATTTCAGTGCTATGTTGGCG 58.211 47.619 0.00 0.00 0.00 5.69
803 819 1.766494 TGGGGCATTTCAGTGCTATG 58.234 50.000 0.00 0.00 44.45 2.23
828 849 2.033141 TGGTCAGAAGCAGCCTGC 59.967 61.111 9.13 9.13 45.46 4.85
835 856 1.149148 GTTTCGTCCTGGTCAGAAGC 58.851 55.000 0.00 0.00 0.00 3.86
917 938 3.715628 AGCTGGTGTTTGCTGTTTAAG 57.284 42.857 0.00 0.00 38.21 1.85
928 949 0.179018 GGGAGTGTGAAGCTGGTGTT 60.179 55.000 0.00 0.00 0.00 3.32
943 964 0.035630 CTGGTTTGGCTCTGAGGGAG 60.036 60.000 6.83 0.00 44.49 4.30
1359 1380 1.423161 ACCTTCAGAAAGCTGCCTTCT 59.577 47.619 7.67 7.67 42.01 2.85
1436 1457 0.183014 ATGCAGCCTCCTGATTCTGG 59.817 55.000 3.27 3.27 41.77 3.86
1496 1517 2.490903 ACTAGCACCGGTGTAGTTGTAG 59.509 50.000 33.92 23.74 29.57 2.74
1674 1706 6.828502 TTCAGTCGTCATAACATAATCAGC 57.171 37.500 0.00 0.00 0.00 4.26
1708 1740 6.875726 TCTTGGTGACTCTTCTGAACATATTG 59.124 38.462 0.00 0.00 0.00 1.90
1722 1754 7.604164 TGTTAATCTGATTCTTCTTGGTGACTC 59.396 37.037 6.10 0.00 0.00 3.36
1753 1785 9.462174 GAATTTTGATATATGCGGTTGATTCAA 57.538 29.630 0.00 0.00 0.00 2.69
1773 1805 9.940166 GAATTGAAATGCACTTTCTTGAATTTT 57.060 25.926 16.99 0.00 43.14 1.82
1788 1820 4.751098 ACATGTGGTGTTGAATTGAAATGC 59.249 37.500 0.00 0.00 38.01 3.56
1806 1838 9.189723 GTTAACTTCTCTTTCGTACTAACATGT 57.810 33.333 0.00 0.00 0.00 3.21
1818 1850 7.698628 AGCAAAACTCTGTTAACTTCTCTTTC 58.301 34.615 7.22 0.00 0.00 2.62
1872 1904 2.002586 CTACCAGTTCTGCAATCGGTG 58.997 52.381 0.00 0.00 0.00 4.94
1874 1906 1.009829 GCTACCAGTTCTGCAATCGG 58.990 55.000 0.00 0.00 0.00 4.18
1877 1909 3.146104 AGTTGCTACCAGTTCTGCAAT 57.854 42.857 0.00 0.00 45.25 3.56
1886 1918 6.422776 CTGGTAATGTAAAGTTGCTACCAG 57.577 41.667 10.72 10.72 45.88 4.00
1969 2001 3.446873 AGACCTGTGAGTAGCAGATGAAG 59.553 47.826 0.00 0.00 36.12 3.02
1987 2020 7.320443 TGTTGAGTAAATTATGCATGAGACC 57.680 36.000 10.16 0.00 0.00 3.85
2010 2043 1.009829 GCAGGTCTAGAAACGGCATG 58.990 55.000 13.41 2.60 0.00 4.06
2230 2263 0.721718 CTCGGTTCTTCGTTGCCATC 59.278 55.000 0.00 0.00 0.00 3.51
2242 2275 2.821991 AGCAGTATATGGCTCGGTTC 57.178 50.000 0.00 0.00 34.76 3.62
2272 2305 0.110238 CGTTTCGGACAATGCCACAG 60.110 55.000 0.00 0.00 0.00 3.66
2275 2308 2.950673 GCGTTTCGGACAATGCCA 59.049 55.556 6.08 0.00 33.22 4.92
2299 2332 0.035152 TGAGCTCATGGGTTGCGATT 60.035 50.000 13.74 0.00 0.00 3.34
2346 2380 6.785337 TTGGAGATCAATCATGATGCTTTT 57.215 33.333 9.46 0.00 46.30 2.27
2390 2424 6.301169 CCTACTTTAACTTCCTGAGGTCAT 57.699 41.667 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.