Multiple sequence alignment - TraesCS5B01G257700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G257700 chr5B 100.000 2547 0 0 1 2547 440177867 440180413 0.000000e+00 4704.0
1 TraesCS5B01G257700 chr4B 94.026 837 42 4 1718 2547 657792601 657793436 0.000000e+00 1262.0
2 TraesCS5B01G257700 chr5A 88.720 1055 63 26 591 1600 473407024 473408067 0.000000e+00 1238.0
3 TraesCS5B01G257700 chr5A 83.333 264 33 5 19 271 473406668 473406931 1.520000e-57 233.0
4 TraesCS5B01G257700 chr5A 85.366 82 11 1 516 596 476844874 476844955 1.620000e-12 84.2
5 TraesCS5B01G257700 chr5D 91.543 875 43 7 767 1619 370818321 370819186 0.000000e+00 1177.0
6 TraesCS5B01G257700 chr5D 91.031 223 20 0 1721 1943 68251887 68251665 4.120000e-78 302.0
7 TraesCS5B01G257700 chr5D 85.981 214 26 3 62 271 370817696 370817909 2.550000e-55 226.0
8 TraesCS5B01G257700 chr5D 89.744 117 9 1 1506 1619 370819205 370819321 2.040000e-31 147.0
9 TraesCS5B01G257700 chr5D 86.420 81 11 0 516 596 375733630 375733710 3.490000e-14 89.8
10 TraesCS5B01G257700 chr7B 94.256 766 36 4 1790 2547 56453732 56454497 0.000000e+00 1164.0
11 TraesCS5B01G257700 chr7B 92.195 615 38 6 1721 2328 124240035 124239424 0.000000e+00 861.0
12 TraesCS5B01G257700 chr7B 89.053 338 32 5 2207 2544 583627401 583627733 5.070000e-112 414.0
13 TraesCS5B01G257700 chr4A 90.821 828 54 12 1731 2547 699001360 699002176 0.000000e+00 1088.0
14 TraesCS5B01G257700 chr2D 87.286 409 45 5 2135 2539 130896490 130896895 6.420000e-126 460.0
15 TraesCS5B01G257700 chr2D 89.767 215 22 0 1732 1946 130896248 130896462 2.500000e-70 276.0
16 TraesCS5B01G257700 chr2A 89.053 338 30 7 2213 2547 709176285 709176618 1.820000e-111 412.0
17 TraesCS5B01G257700 chr2A 83.491 424 57 9 2131 2547 709618635 709618218 1.430000e-102 383.0
18 TraesCS5B01G257700 chr6B 91.321 265 22 1 333 596 608038217 608037953 6.700000e-96 361.0
19 TraesCS5B01G257700 chr6B 89.057 265 25 3 334 596 175709660 175709922 2.440000e-85 326.0
20 TraesCS5B01G257700 chr1B 89.394 264 26 2 334 596 90878721 90878459 5.250000e-87 331.0
21 TraesCS5B01G257700 chr1B 88.848 269 27 3 334 600 566805294 566805027 6.790000e-86 327.0
22 TraesCS5B01G257700 chr1B 93.023 43 2 1 555 596 545464112 545464070 7.610000e-06 62.1
23 TraesCS5B01G257700 chr7D 91.324 219 16 2 1731 1946 263979220 263979002 1.920000e-76 296.0
24 TraesCS5B01G257700 chr7D 87.442 215 24 3 2206 2419 263978970 263978758 7.040000e-61 244.0
25 TraesCS5B01G257700 chr6D 89.956 229 23 0 1718 1946 457343647 457343875 1.920000e-76 296.0
26 TraesCS5B01G257700 chr3A 89.806 206 19 2 2336 2539 88853077 88853282 1.940000e-66 263.0
27 TraesCS5B01G257700 chr2B 88.837 215 22 2 1733 1947 150877634 150877846 1.940000e-66 263.0
28 TraesCS5B01G257700 chr1D 79.567 323 36 11 1627 1946 408564895 408564600 1.190000e-48 204.0
29 TraesCS5B01G257700 chr3D 88.889 81 9 0 516 596 613077191 613077111 1.610000e-17 100.0
30 TraesCS5B01G257700 chr3B 90.625 64 6 0 533 596 489363283 489363220 4.510000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G257700 chr5B 440177867 440180413 2546 False 4704.000000 4704 100.000000 1 2547 1 chr5B.!!$F1 2546
1 TraesCS5B01G257700 chr4B 657792601 657793436 835 False 1262.000000 1262 94.026000 1718 2547 1 chr4B.!!$F1 829
2 TraesCS5B01G257700 chr5A 473406668 473408067 1399 False 735.500000 1238 86.026500 19 1600 2 chr5A.!!$F2 1581
3 TraesCS5B01G257700 chr5D 370817696 370819321 1625 False 516.666667 1177 89.089333 62 1619 3 chr5D.!!$F2 1557
4 TraesCS5B01G257700 chr7B 56453732 56454497 765 False 1164.000000 1164 94.256000 1790 2547 1 chr7B.!!$F1 757
5 TraesCS5B01G257700 chr7B 124239424 124240035 611 True 861.000000 861 92.195000 1721 2328 1 chr7B.!!$R1 607
6 TraesCS5B01G257700 chr4A 699001360 699002176 816 False 1088.000000 1088 90.821000 1731 2547 1 chr4A.!!$F1 816
7 TraesCS5B01G257700 chr2D 130896248 130896895 647 False 368.000000 460 88.526500 1732 2539 2 chr2D.!!$F1 807

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
837 1077 0.180406 GGCAGATCAATGTACCCGGT 59.82 55.0 0.0 0.0 0.0 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1701 2104 0.104487 TTGTCGGACAAGTTACGGCA 59.896 50.0 19.07 2.28 40.76 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.101448 GGGGACTGCATCACCGCT 62.101 66.667 11.65 0.00 42.62 5.52
36 37 2.401766 GGGACTGCATCACCGCTTG 61.402 63.158 0.00 0.00 0.00 4.01
57 58 1.410882 GATCGGGACAGAAGAGAAGGG 59.589 57.143 0.00 0.00 0.00 3.95
91 97 1.218763 CTCTTCAGCATGCAGATCCG 58.781 55.000 21.98 9.08 37.83 4.18
95 101 1.523032 CAGCATGCAGATCCGCTCA 60.523 57.895 21.98 0.00 30.72 4.26
131 137 9.309224 ACTAAACCAAGCTCTAAATACCAATTT 57.691 29.630 0.00 0.00 38.80 1.82
144 150 3.328535 ACCAATTTTGAGACCCAAGGT 57.671 42.857 0.00 0.00 39.44 3.50
156 162 2.065799 ACCCAAGGTGGTCTCAGAAAT 58.934 47.619 0.00 0.00 35.17 2.17
180 187 2.753989 TTTGCAGTCAATCACACACG 57.246 45.000 0.00 0.00 31.33 4.49
181 188 0.943673 TTGCAGTCAATCACACACGG 59.056 50.000 0.00 0.00 0.00 4.94
236 246 6.371825 ACTTCAAGAAACTTAGCCGGATTTAG 59.628 38.462 5.05 2.15 0.00 1.85
249 262 4.833390 CCGGATTTAGGATATCAAGGGTC 58.167 47.826 0.00 0.00 0.00 4.46
263 276 5.560722 TCAAGGGTCAATCAGAAACACTA 57.439 39.130 0.00 0.00 0.00 2.74
271 284 6.128526 GGTCAATCAGAAACACTAACAGCTAC 60.129 42.308 0.00 0.00 0.00 3.58
272 285 6.647067 GTCAATCAGAAACACTAACAGCTACT 59.353 38.462 0.00 0.00 0.00 2.57
273 286 6.868864 TCAATCAGAAACACTAACAGCTACTC 59.131 38.462 0.00 0.00 0.00 2.59
274 287 5.135508 TCAGAAACACTAACAGCTACTCC 57.864 43.478 0.00 0.00 0.00 3.85
275 288 4.021368 TCAGAAACACTAACAGCTACTCCC 60.021 45.833 0.00 0.00 0.00 4.30
277 290 4.221041 AGAAACACTAACAGCTACTCCCTC 59.779 45.833 0.00 0.00 0.00 4.30
278 291 2.458620 ACACTAACAGCTACTCCCTCC 58.541 52.381 0.00 0.00 0.00 4.30
279 292 1.405821 CACTAACAGCTACTCCCTCCG 59.594 57.143 0.00 0.00 0.00 4.63
280 293 1.005687 ACTAACAGCTACTCCCTCCGT 59.994 52.381 0.00 0.00 0.00 4.69
283 296 2.128507 CAGCTACTCCCTCCGTCCC 61.129 68.421 0.00 0.00 0.00 4.46
284 297 3.217743 GCTACTCCCTCCGTCCCG 61.218 72.222 0.00 0.00 0.00 5.14
300 320 1.063942 TCCCGGAGTAGAATGAGCTCA 60.064 52.381 20.79 20.79 0.00 4.26
330 378 5.104941 TCGAGAATCCAATTTGGCTCTAAGA 60.105 40.000 10.76 13.07 37.47 2.10
332 380 6.238320 CGAGAATCCAATTTGGCTCTAAGAAG 60.238 42.308 10.76 2.68 37.47 2.85
333 381 6.488715 AGAATCCAATTTGGCTCTAAGAAGT 58.511 36.000 10.76 0.00 37.47 3.01
334 382 7.633789 AGAATCCAATTTGGCTCTAAGAAGTA 58.366 34.615 10.76 0.00 37.47 2.24
335 383 7.554476 AGAATCCAATTTGGCTCTAAGAAGTAC 59.446 37.037 10.76 0.00 37.47 2.73
336 384 6.374417 TCCAATTTGGCTCTAAGAAGTACT 57.626 37.500 10.76 0.00 37.47 2.73
338 386 5.586643 CCAATTTGGCTCTAAGAAGTACTCC 59.413 44.000 1.71 0.00 0.00 3.85
339 387 4.820894 TTTGGCTCTAAGAAGTACTCCC 57.179 45.455 0.00 0.00 0.00 4.30
340 388 3.759815 TGGCTCTAAGAAGTACTCCCT 57.240 47.619 0.00 0.00 0.00 4.20
341 389 3.633418 TGGCTCTAAGAAGTACTCCCTC 58.367 50.000 0.00 0.00 0.00 4.30
342 390 2.960384 GGCTCTAAGAAGTACTCCCTCC 59.040 54.545 0.00 0.00 0.00 4.30
343 391 3.373329 GGCTCTAAGAAGTACTCCCTCCT 60.373 52.174 0.00 0.00 0.00 3.69
344 392 4.283337 GCTCTAAGAAGTACTCCCTCCTT 58.717 47.826 0.00 0.00 0.00 3.36
345 393 4.340097 GCTCTAAGAAGTACTCCCTCCTTC 59.660 50.000 0.00 0.00 35.84 3.46
346 394 4.869451 TCTAAGAAGTACTCCCTCCTTCC 58.131 47.826 0.00 0.00 36.16 3.46
347 395 2.553911 AGAAGTACTCCCTCCTTCCC 57.446 55.000 0.00 0.00 36.16 3.97
348 396 1.722851 AGAAGTACTCCCTCCTTCCCA 59.277 52.381 0.00 0.00 36.16 4.37
349 397 2.112190 GAAGTACTCCCTCCTTCCCAG 58.888 57.143 0.00 0.00 30.67 4.45
350 398 1.394532 AGTACTCCCTCCTTCCCAGA 58.605 55.000 0.00 0.00 0.00 3.86
351 399 1.940957 AGTACTCCCTCCTTCCCAGAT 59.059 52.381 0.00 0.00 0.00 2.90
352 400 2.319438 AGTACTCCCTCCTTCCCAGATT 59.681 50.000 0.00 0.00 0.00 2.40
353 401 1.589414 ACTCCCTCCTTCCCAGATTG 58.411 55.000 0.00 0.00 0.00 2.67
354 402 1.203492 ACTCCCTCCTTCCCAGATTGT 60.203 52.381 0.00 0.00 0.00 2.71
355 403 1.918957 CTCCCTCCTTCCCAGATTGTT 59.081 52.381 0.00 0.00 0.00 2.83
356 404 3.115390 CTCCCTCCTTCCCAGATTGTTA 58.885 50.000 0.00 0.00 0.00 2.41
357 405 3.115390 TCCCTCCTTCCCAGATTGTTAG 58.885 50.000 0.00 0.00 0.00 2.34
358 406 2.173569 CCCTCCTTCCCAGATTGTTAGG 59.826 54.545 0.00 0.00 0.00 2.69
359 407 2.422093 CCTCCTTCCCAGATTGTTAGGC 60.422 54.545 0.00 0.00 0.00 3.93
360 408 1.209504 TCCTTCCCAGATTGTTAGGCG 59.790 52.381 0.00 0.00 0.00 5.52
361 409 1.065418 CCTTCCCAGATTGTTAGGCGT 60.065 52.381 0.00 0.00 0.00 5.68
362 410 2.169769 CCTTCCCAGATTGTTAGGCGTA 59.830 50.000 0.00 0.00 0.00 4.42
363 411 3.181454 CCTTCCCAGATTGTTAGGCGTAT 60.181 47.826 0.00 0.00 0.00 3.06
364 412 4.451900 CTTCCCAGATTGTTAGGCGTATT 58.548 43.478 0.00 0.00 0.00 1.89
365 413 5.454187 CCTTCCCAGATTGTTAGGCGTATTA 60.454 44.000 0.00 0.00 0.00 0.98
366 414 5.209818 TCCCAGATTGTTAGGCGTATTAG 57.790 43.478 0.00 0.00 0.00 1.73
367 415 4.652421 TCCCAGATTGTTAGGCGTATTAGT 59.348 41.667 0.00 0.00 0.00 2.24
368 416 4.989168 CCCAGATTGTTAGGCGTATTAGTC 59.011 45.833 0.00 0.00 0.00 2.59
369 417 5.221461 CCCAGATTGTTAGGCGTATTAGTCT 60.221 44.000 0.00 0.00 0.00 3.24
370 418 6.281405 CCAGATTGTTAGGCGTATTAGTCTT 58.719 40.000 0.00 0.00 0.00 3.01
371 419 6.761714 CCAGATTGTTAGGCGTATTAGTCTTT 59.238 38.462 0.00 0.00 0.00 2.52
372 420 7.924412 CCAGATTGTTAGGCGTATTAGTCTTTA 59.076 37.037 0.00 0.00 0.00 1.85
373 421 8.969267 CAGATTGTTAGGCGTATTAGTCTTTAG 58.031 37.037 0.00 0.00 0.00 1.85
374 422 7.652507 AGATTGTTAGGCGTATTAGTCTTTAGC 59.347 37.037 0.00 0.00 0.00 3.09
375 423 6.211587 TGTTAGGCGTATTAGTCTTTAGCA 57.788 37.500 0.00 0.00 0.00 3.49
376 424 6.038356 TGTTAGGCGTATTAGTCTTTAGCAC 58.962 40.000 0.00 0.00 0.00 4.40
377 425 3.703420 AGGCGTATTAGTCTTTAGCACG 58.297 45.455 0.00 0.00 0.00 5.34
378 426 3.379372 AGGCGTATTAGTCTTTAGCACGA 59.621 43.478 0.00 0.00 0.00 4.35
379 427 4.107622 GGCGTATTAGTCTTTAGCACGAA 58.892 43.478 0.00 0.00 0.00 3.85
380 428 4.563976 GGCGTATTAGTCTTTAGCACGAAA 59.436 41.667 0.00 0.00 0.00 3.46
381 429 5.062558 GGCGTATTAGTCTTTAGCACGAAAA 59.937 40.000 0.00 0.00 0.00 2.29
382 430 6.238022 GGCGTATTAGTCTTTAGCACGAAAAT 60.238 38.462 0.00 0.00 0.00 1.82
383 431 7.178074 GCGTATTAGTCTTTAGCACGAAAATT 58.822 34.615 0.00 0.00 0.00 1.82
384 432 8.323140 GCGTATTAGTCTTTAGCACGAAAATTA 58.677 33.333 0.00 0.00 0.00 1.40
385 433 9.831054 CGTATTAGTCTTTAGCACGAAAATTAG 57.169 33.333 0.00 0.00 0.00 1.73
386 434 9.634300 GTATTAGTCTTTAGCACGAAAATTAGC 57.366 33.333 0.00 0.00 0.00 3.09
387 435 5.204673 AGTCTTTAGCACGAAAATTAGCG 57.795 39.130 0.00 0.00 0.00 4.26
388 436 4.689345 AGTCTTTAGCACGAAAATTAGCGT 59.311 37.500 0.00 0.23 42.11 5.07
389 437 5.865552 AGTCTTTAGCACGAAAATTAGCGTA 59.134 36.000 5.36 0.00 38.92 4.42
390 438 5.950355 GTCTTTAGCACGAAAATTAGCGTAC 59.050 40.000 5.36 1.08 38.92 3.67
391 439 4.488518 TTAGCACGAAAATTAGCGTACG 57.511 40.909 11.84 11.84 38.92 3.67
392 440 2.331194 AGCACGAAAATTAGCGTACGT 58.669 42.857 17.90 6.37 38.92 3.57
394 442 2.781973 GCACGAAAATTAGCGTACGTGG 60.782 50.000 17.90 0.00 46.74 4.94
395 443 2.662637 CACGAAAATTAGCGTACGTGGA 59.337 45.455 17.90 3.07 44.29 4.02
396 444 3.305094 CACGAAAATTAGCGTACGTGGAT 59.695 43.478 17.90 5.41 44.29 3.41
397 445 3.928375 ACGAAAATTAGCGTACGTGGATT 59.072 39.130 17.90 11.07 39.21 3.01
398 446 4.389687 ACGAAAATTAGCGTACGTGGATTT 59.610 37.500 17.90 15.84 39.21 2.17
399 447 5.106987 ACGAAAATTAGCGTACGTGGATTTT 60.107 36.000 24.03 24.03 39.21 1.82
400 448 5.791480 CGAAAATTAGCGTACGTGGATTTTT 59.209 36.000 24.32 19.40 29.71 1.94
401 449 6.954852 CGAAAATTAGCGTACGTGGATTTTTA 59.045 34.615 24.32 5.51 29.71 1.52
402 450 7.637132 CGAAAATTAGCGTACGTGGATTTTTAT 59.363 33.333 24.32 12.71 29.71 1.40
403 451 9.281075 GAAAATTAGCGTACGTGGATTTTTATT 57.719 29.630 24.32 12.48 29.71 1.40
404 452 9.628746 AAAATTAGCGTACGTGGATTTTTATTT 57.371 25.926 17.90 7.33 0.00 1.40
405 453 8.609478 AATTAGCGTACGTGGATTTTTATTTG 57.391 30.769 17.90 0.00 0.00 2.32
406 454 5.866335 AGCGTACGTGGATTTTTATTTGA 57.134 34.783 17.90 0.00 0.00 2.69
407 455 5.624292 AGCGTACGTGGATTTTTATTTGAC 58.376 37.500 17.90 0.00 0.00 3.18
408 456 4.789629 GCGTACGTGGATTTTTATTTGACC 59.210 41.667 17.90 0.00 0.00 4.02
409 457 5.326292 CGTACGTGGATTTTTATTTGACCC 58.674 41.667 7.22 0.00 0.00 4.46
410 458 5.106634 CGTACGTGGATTTTTATTTGACCCA 60.107 40.000 7.22 0.00 0.00 4.51
411 459 5.993748 ACGTGGATTTTTATTTGACCCAT 57.006 34.783 0.00 0.00 0.00 4.00
412 460 5.961272 ACGTGGATTTTTATTTGACCCATC 58.039 37.500 0.00 0.00 0.00 3.51
413 461 5.034152 CGTGGATTTTTATTTGACCCATCG 58.966 41.667 0.00 0.00 0.00 3.84
414 462 5.392595 CGTGGATTTTTATTTGACCCATCGT 60.393 40.000 0.00 0.00 0.00 3.73
415 463 6.183360 CGTGGATTTTTATTTGACCCATCGTA 60.183 38.462 0.00 0.00 0.00 3.43
416 464 6.970613 GTGGATTTTTATTTGACCCATCGTAC 59.029 38.462 0.00 0.00 0.00 3.67
417 465 6.659668 TGGATTTTTATTTGACCCATCGTACA 59.340 34.615 0.00 0.00 0.00 2.90
418 466 7.176865 TGGATTTTTATTTGACCCATCGTACAA 59.823 33.333 0.00 0.00 0.00 2.41
419 467 7.700656 GGATTTTTATTTGACCCATCGTACAAG 59.299 37.037 0.00 0.00 0.00 3.16
420 468 7.513371 TTTTTATTTGACCCATCGTACAAGT 57.487 32.000 0.00 0.00 0.00 3.16
421 469 7.513371 TTTTATTTGACCCATCGTACAAGTT 57.487 32.000 0.00 0.00 0.00 2.66
422 470 6.489127 TTATTTGACCCATCGTACAAGTTG 57.511 37.500 0.00 0.00 0.00 3.16
423 471 3.478857 TTGACCCATCGTACAAGTTGT 57.521 42.857 14.05 14.05 0.00 3.32
424 472 4.603989 TTGACCCATCGTACAAGTTGTA 57.396 40.909 11.75 11.75 0.00 2.41
436 484 3.550820 ACAAGTTGTACACATGAAGGCA 58.449 40.909 6.75 0.00 0.00 4.75
437 485 3.951037 ACAAGTTGTACACATGAAGGCAA 59.049 39.130 6.75 0.00 0.00 4.52
438 486 4.584325 ACAAGTTGTACACATGAAGGCAAT 59.416 37.500 6.75 0.00 0.00 3.56
439 487 5.156355 CAAGTTGTACACATGAAGGCAATC 58.844 41.667 0.00 0.00 0.00 2.67
440 488 4.397420 AGTTGTACACATGAAGGCAATCA 58.603 39.130 0.00 0.00 0.00 2.57
441 489 4.216257 AGTTGTACACATGAAGGCAATCAC 59.784 41.667 0.00 0.00 30.82 3.06
442 490 2.741517 TGTACACATGAAGGCAATCACG 59.258 45.455 0.00 0.00 30.82 4.35
443 491 2.183478 ACACATGAAGGCAATCACGA 57.817 45.000 0.00 0.00 30.82 4.35
444 492 2.715046 ACACATGAAGGCAATCACGAT 58.285 42.857 0.00 0.00 30.82 3.73
445 493 3.084039 ACACATGAAGGCAATCACGATT 58.916 40.909 0.00 0.00 30.82 3.34
446 494 3.127548 ACACATGAAGGCAATCACGATTC 59.872 43.478 0.00 0.00 30.82 2.52
447 495 3.127376 CACATGAAGGCAATCACGATTCA 59.873 43.478 0.00 0.00 34.64 2.57
448 496 3.758023 ACATGAAGGCAATCACGATTCAA 59.242 39.130 0.00 0.00 33.91 2.69
449 497 4.218200 ACATGAAGGCAATCACGATTCAAA 59.782 37.500 0.00 0.00 33.91 2.69
450 498 4.844998 TGAAGGCAATCACGATTCAAAA 57.155 36.364 0.00 0.00 0.00 2.44
451 499 5.193663 TGAAGGCAATCACGATTCAAAAA 57.806 34.783 0.00 0.00 0.00 1.94
469 517 3.795688 AAAAGAAGTGAGAGGCATCCA 57.204 42.857 0.00 0.00 0.00 3.41
470 518 2.777832 AAGAAGTGAGAGGCATCCAC 57.222 50.000 10.71 10.71 0.00 4.02
471 519 0.534412 AGAAGTGAGAGGCATCCACG 59.466 55.000 12.24 0.00 34.01 4.94
472 520 0.532573 GAAGTGAGAGGCATCCACGA 59.467 55.000 12.24 0.00 34.01 4.35
473 521 1.137872 GAAGTGAGAGGCATCCACGAT 59.862 52.381 12.24 7.37 34.01 3.73
474 522 0.749649 AGTGAGAGGCATCCACGATC 59.250 55.000 12.24 0.00 34.01 3.69
475 523 0.749649 GTGAGAGGCATCCACGATCT 59.250 55.000 0.00 0.00 0.00 2.75
476 524 1.137872 GTGAGAGGCATCCACGATCTT 59.862 52.381 0.00 0.00 0.00 2.40
477 525 1.410517 TGAGAGGCATCCACGATCTTC 59.589 52.381 0.00 0.00 0.00 2.87
478 526 1.686052 GAGAGGCATCCACGATCTTCT 59.314 52.381 0.00 0.00 0.00 2.85
479 527 2.102252 GAGAGGCATCCACGATCTTCTT 59.898 50.000 0.00 0.00 0.00 2.52
480 528 2.503356 AGAGGCATCCACGATCTTCTTT 59.497 45.455 0.00 0.00 0.00 2.52
481 529 2.869192 GAGGCATCCACGATCTTCTTTC 59.131 50.000 0.00 0.00 0.00 2.62
482 530 1.943340 GGCATCCACGATCTTCTTTCC 59.057 52.381 0.00 0.00 0.00 3.13
483 531 2.632377 GCATCCACGATCTTCTTTCCA 58.368 47.619 0.00 0.00 0.00 3.53
484 532 3.009723 GCATCCACGATCTTCTTTCCAA 58.990 45.455 0.00 0.00 0.00 3.53
485 533 3.629398 GCATCCACGATCTTCTTTCCAAT 59.371 43.478 0.00 0.00 0.00 3.16
486 534 4.096984 GCATCCACGATCTTCTTTCCAATT 59.903 41.667 0.00 0.00 0.00 2.32
487 535 5.296780 GCATCCACGATCTTCTTTCCAATTA 59.703 40.000 0.00 0.00 0.00 1.40
488 536 6.183360 GCATCCACGATCTTCTTTCCAATTAA 60.183 38.462 0.00 0.00 0.00 1.40
489 537 7.628366 GCATCCACGATCTTCTTTCCAATTAAA 60.628 37.037 0.00 0.00 0.00 1.52
490 538 7.938140 TCCACGATCTTCTTTCCAATTAAAT 57.062 32.000 0.00 0.00 0.00 1.40
491 539 9.627123 ATCCACGATCTTCTTTCCAATTAAATA 57.373 29.630 0.00 0.00 0.00 1.40
492 540 9.627123 TCCACGATCTTCTTTCCAATTAAATAT 57.373 29.630 0.00 0.00 0.00 1.28
493 541 9.669353 CCACGATCTTCTTTCCAATTAAATATG 57.331 33.333 0.00 0.00 0.00 1.78
494 542 9.669353 CACGATCTTCTTTCCAATTAAATATGG 57.331 33.333 0.00 0.14 38.09 2.74
495 543 9.627123 ACGATCTTCTTTCCAATTAAATATGGA 57.373 29.630 4.40 4.40 43.84 3.41
496 544 9.884465 CGATCTTCTTTCCAATTAAATATGGAC 57.116 33.333 7.33 0.00 45.14 4.02
498 546 9.713684 ATCTTCTTTCCAATTAAATATGGACCA 57.286 29.630 0.00 0.00 45.14 4.02
499 547 9.713684 TCTTCTTTCCAATTAAATATGGACCAT 57.286 29.630 12.67 12.67 45.14 3.55
503 551 9.696917 CTTTCCAATTAAATATGGACCATTAGC 57.303 33.333 13.40 0.00 45.14 3.09
504 552 9.432982 TTTCCAATTAAATATGGACCATTAGCT 57.567 29.630 13.40 0.00 45.14 3.32
505 553 9.432982 TTCCAATTAAATATGGACCATTAGCTT 57.567 29.630 13.40 4.04 45.14 3.74
513 561 9.646522 AAATATGGACCATTAGCTTAACTGATT 57.353 29.630 13.40 0.00 0.00 2.57
514 562 9.646522 AATATGGACCATTAGCTTAACTGATTT 57.353 29.630 13.40 0.00 0.00 2.17
516 564 8.682936 ATGGACCATTAGCTTAACTGATTTAG 57.317 34.615 0.00 0.00 0.00 1.85
517 565 7.857456 TGGACCATTAGCTTAACTGATTTAGA 58.143 34.615 0.00 0.00 0.00 2.10
518 566 7.987458 TGGACCATTAGCTTAACTGATTTAGAG 59.013 37.037 0.00 0.00 0.00 2.43
519 567 8.204836 GGACCATTAGCTTAACTGATTTAGAGA 58.795 37.037 0.00 0.00 0.00 3.10
520 568 9.255304 GACCATTAGCTTAACTGATTTAGAGAG 57.745 37.037 0.00 0.00 0.00 3.20
521 569 8.207545 ACCATTAGCTTAACTGATTTAGAGAGG 58.792 37.037 0.00 0.00 0.00 3.69
522 570 8.424918 CCATTAGCTTAACTGATTTAGAGAGGA 58.575 37.037 0.00 0.00 0.00 3.71
523 571 9.823647 CATTAGCTTAACTGATTTAGAGAGGAA 57.176 33.333 0.00 0.00 0.00 3.36
525 573 6.883744 AGCTTAACTGATTTAGAGAGGAAGG 58.116 40.000 0.00 0.00 0.00 3.46
526 574 5.525745 GCTTAACTGATTTAGAGAGGAAGGC 59.474 44.000 0.00 0.00 0.00 4.35
527 575 6.620877 TTAACTGATTTAGAGAGGAAGGCA 57.379 37.500 0.00 0.00 0.00 4.75
528 576 5.707066 AACTGATTTAGAGAGGAAGGCAT 57.293 39.130 0.00 0.00 0.00 4.40
529 577 5.033589 ACTGATTTAGAGAGGAAGGCATG 57.966 43.478 0.00 0.00 0.00 4.06
530 578 4.472833 ACTGATTTAGAGAGGAAGGCATGT 59.527 41.667 0.00 0.00 0.00 3.21
531 579 4.774124 TGATTTAGAGAGGAAGGCATGTG 58.226 43.478 0.00 0.00 0.00 3.21
532 580 2.698855 TTAGAGAGGAAGGCATGTGC 57.301 50.000 0.00 0.00 41.14 4.57
533 581 0.461548 TAGAGAGGAAGGCATGTGCG 59.538 55.000 0.00 0.00 43.26 5.34
534 582 2.437359 AGAGGAAGGCATGTGCGC 60.437 61.111 0.00 0.00 43.26 6.09
545 593 3.193157 GCATGTGCGCCTTAGAATATG 57.807 47.619 4.18 0.00 0.00 1.78
546 594 2.095567 GCATGTGCGCCTTAGAATATGG 60.096 50.000 4.18 0.00 38.81 2.74
547 595 2.254546 TGTGCGCCTTAGAATATGGG 57.745 50.000 4.18 0.00 36.45 4.00
548 596 1.765904 TGTGCGCCTTAGAATATGGGA 59.234 47.619 4.18 0.00 36.45 4.37
549 597 2.371841 TGTGCGCCTTAGAATATGGGAT 59.628 45.455 4.18 0.00 36.45 3.85
550 598 3.181445 TGTGCGCCTTAGAATATGGGATT 60.181 43.478 4.18 0.00 36.45 3.01
551 599 3.189287 GTGCGCCTTAGAATATGGGATTG 59.811 47.826 4.18 0.00 36.45 2.67
552 600 2.162408 GCGCCTTAGAATATGGGATTGC 59.838 50.000 0.00 0.00 36.45 3.56
553 601 3.411446 CGCCTTAGAATATGGGATTGCA 58.589 45.455 0.00 0.00 36.45 4.08
554 602 4.012374 CGCCTTAGAATATGGGATTGCAT 58.988 43.478 0.00 0.00 36.45 3.96
555 603 4.142534 CGCCTTAGAATATGGGATTGCATG 60.143 45.833 0.00 0.00 36.45 4.06
556 604 4.381292 GCCTTAGAATATGGGATTGCATGC 60.381 45.833 11.82 11.82 36.45 4.06
557 605 4.768448 CCTTAGAATATGGGATTGCATGCA 59.232 41.667 18.46 18.46 32.55 3.96
558 606 5.105877 CCTTAGAATATGGGATTGCATGCAG 60.106 44.000 21.50 2.95 32.55 4.41
559 607 4.108501 AGAATATGGGATTGCATGCAGA 57.891 40.909 21.50 12.42 0.00 4.26
560 608 4.476297 AGAATATGGGATTGCATGCAGAA 58.524 39.130 21.50 7.62 0.00 3.02
561 609 4.897076 AGAATATGGGATTGCATGCAGAAA 59.103 37.500 21.50 6.77 0.00 2.52
562 610 2.973694 ATGGGATTGCATGCAGAAAC 57.026 45.000 21.50 13.26 0.00 2.78
563 611 1.927487 TGGGATTGCATGCAGAAACT 58.073 45.000 21.50 4.54 0.00 2.66
564 612 2.250031 TGGGATTGCATGCAGAAACTT 58.750 42.857 21.50 2.88 0.00 2.66
565 613 3.429492 TGGGATTGCATGCAGAAACTTA 58.571 40.909 21.50 4.23 0.00 2.24
566 614 3.831333 TGGGATTGCATGCAGAAACTTAA 59.169 39.130 21.50 3.38 0.00 1.85
567 615 4.282957 TGGGATTGCATGCAGAAACTTAAA 59.717 37.500 21.50 2.55 0.00 1.52
568 616 4.627035 GGGATTGCATGCAGAAACTTAAAC 59.373 41.667 21.50 1.90 0.00 2.01
569 617 4.324402 GGATTGCATGCAGAAACTTAAACG 59.676 41.667 21.50 0.00 0.00 3.60
570 618 2.660490 TGCATGCAGAAACTTAAACGC 58.340 42.857 18.46 0.00 0.00 4.84
571 619 1.985684 GCATGCAGAAACTTAAACGCC 59.014 47.619 14.21 0.00 0.00 5.68
572 620 2.595386 CATGCAGAAACTTAAACGCCC 58.405 47.619 0.00 0.00 0.00 6.13
573 621 1.681538 TGCAGAAACTTAAACGCCCA 58.318 45.000 0.00 0.00 0.00 5.36
574 622 2.025155 TGCAGAAACTTAAACGCCCAA 58.975 42.857 0.00 0.00 0.00 4.12
575 623 2.034053 TGCAGAAACTTAAACGCCCAAG 59.966 45.455 0.00 0.00 0.00 3.61
576 624 2.292292 GCAGAAACTTAAACGCCCAAGA 59.708 45.455 0.00 0.00 0.00 3.02
577 625 3.057526 GCAGAAACTTAAACGCCCAAGAT 60.058 43.478 0.00 0.00 0.00 2.40
578 626 4.558697 GCAGAAACTTAAACGCCCAAGATT 60.559 41.667 0.00 0.00 0.00 2.40
579 627 5.528870 CAGAAACTTAAACGCCCAAGATTT 58.471 37.500 0.00 0.00 0.00 2.17
580 628 5.983118 CAGAAACTTAAACGCCCAAGATTTT 59.017 36.000 0.00 0.00 0.00 1.82
581 629 5.983118 AGAAACTTAAACGCCCAAGATTTTG 59.017 36.000 0.00 0.00 0.00 2.44
592 640 3.456380 CAAGATTTTGGGAAGGAGGGA 57.544 47.619 0.00 0.00 0.00 4.20
593 641 3.359950 CAAGATTTTGGGAAGGAGGGAG 58.640 50.000 0.00 0.00 0.00 4.30
594 642 2.648838 AGATTTTGGGAAGGAGGGAGT 58.351 47.619 0.00 0.00 0.00 3.85
612 660 1.016130 GTATATGCTCATGCGCGCCT 61.016 55.000 30.77 17.59 43.34 5.52
677 735 6.578944 TGTGTTCATTGTCGCTACCTATAAT 58.421 36.000 0.00 0.00 0.00 1.28
739 804 6.489127 TGAACGATAAATGTTACCCACAAG 57.511 37.500 0.00 0.00 39.50 3.16
837 1077 0.180406 GGCAGATCAATGTACCCGGT 59.820 55.000 0.00 0.00 0.00 5.28
847 1087 0.615331 TGTACCCGGTCTAGTCGACT 59.385 55.000 23.66 23.66 42.44 4.18
991 1232 1.392710 ATCGACTCCACCGTCCCATC 61.393 60.000 0.00 0.00 0.00 3.51
1040 1281 2.417516 CCGTGCTGGATAGGGACG 59.582 66.667 0.00 0.00 45.45 4.79
1058 1301 1.145759 CGCACACACTCACTCGTTGT 61.146 55.000 0.00 0.00 0.00 3.32
1059 1302 0.577269 GCACACACTCACTCGTTGTC 59.423 55.000 0.00 0.00 0.00 3.18
1060 1303 1.921243 CACACACTCACTCGTTGTCA 58.079 50.000 0.00 0.00 0.00 3.58
1061 1304 2.473816 CACACACTCACTCGTTGTCAT 58.526 47.619 0.00 0.00 0.00 3.06
1062 1305 2.472861 CACACACTCACTCGTTGTCATC 59.527 50.000 0.00 0.00 0.00 2.92
1063 1306 2.100749 ACACACTCACTCGTTGTCATCA 59.899 45.455 0.00 0.00 0.00 3.07
1064 1307 2.472861 CACACTCACTCGTTGTCATCAC 59.527 50.000 0.00 0.00 0.00 3.06
1101 1344 3.766545 TCCAATCCAGAAAAACCAGAGG 58.233 45.455 0.00 0.00 0.00 3.69
1110 1353 2.514458 AAAACCAGAGGAATCCGCAT 57.486 45.000 5.69 0.00 0.00 4.73
1360 1620 1.374758 CCCGACTGAGCACCTGAAC 60.375 63.158 0.00 0.00 0.00 3.18
1554 1954 5.401079 CGCGTGTGGAAAAATGAATAAAGTT 59.599 36.000 0.00 0.00 0.00 2.66
1556 1956 6.346518 GCGTGTGGAAAAATGAATAAAGTTGG 60.347 38.462 0.00 0.00 0.00 3.77
1557 1957 6.699642 CGTGTGGAAAAATGAATAAAGTTGGT 59.300 34.615 0.00 0.00 0.00 3.67
1559 1959 8.974408 GTGTGGAAAAATGAATAAAGTTGGTAC 58.026 33.333 0.00 0.00 0.00 3.34
1560 1960 8.919145 TGTGGAAAAATGAATAAAGTTGGTACT 58.081 29.630 0.00 0.00 35.68 2.73
1561 1961 9.406828 GTGGAAAAATGAATAAAGTTGGTACTC 57.593 33.333 0.00 0.00 31.99 2.59
1642 2045 7.918536 ATAGAGTCAAATACATCATGGATGC 57.081 36.000 6.15 0.00 43.15 3.91
1643 2046 5.068636 AGAGTCAAATACATCATGGATGCC 58.931 41.667 6.15 0.00 43.15 4.40
1644 2047 5.057843 AGTCAAATACATCATGGATGCCT 57.942 39.130 6.15 0.00 43.15 4.75
1645 2048 5.068636 AGTCAAATACATCATGGATGCCTC 58.931 41.667 6.15 0.00 43.15 4.70
1646 2049 4.823442 GTCAAATACATCATGGATGCCTCA 59.177 41.667 6.15 0.00 43.15 3.86
1647 2050 5.300034 GTCAAATACATCATGGATGCCTCAA 59.700 40.000 6.15 0.00 43.15 3.02
1648 2051 5.300034 TCAAATACATCATGGATGCCTCAAC 59.700 40.000 6.15 0.00 43.15 3.18
1649 2052 4.719026 ATACATCATGGATGCCTCAACT 57.281 40.909 6.15 0.00 43.15 3.16
1650 2053 3.377253 ACATCATGGATGCCTCAACTT 57.623 42.857 6.15 0.00 43.15 2.66
1651 2054 3.021695 ACATCATGGATGCCTCAACTTG 58.978 45.455 6.15 0.00 43.15 3.16
1652 2055 2.885135 TCATGGATGCCTCAACTTGT 57.115 45.000 0.00 0.00 0.00 3.16
1653 2056 2.715046 TCATGGATGCCTCAACTTGTC 58.285 47.619 0.00 0.00 0.00 3.18
1654 2057 1.747355 CATGGATGCCTCAACTTGTCC 59.253 52.381 0.00 0.00 0.00 4.02
1655 2058 0.321564 TGGATGCCTCAACTTGTCCG 60.322 55.000 0.00 0.00 0.00 4.79
1656 2059 0.036388 GGATGCCTCAACTTGTCCGA 60.036 55.000 0.00 0.00 0.00 4.55
1657 2060 1.407437 GGATGCCTCAACTTGTCCGAT 60.407 52.381 0.00 0.00 0.00 4.18
1658 2061 1.667724 GATGCCTCAACTTGTCCGATG 59.332 52.381 0.00 0.00 0.00 3.84
1659 2062 0.955428 TGCCTCAACTTGTCCGATGC 60.955 55.000 0.00 0.00 0.00 3.91
1660 2063 1.970917 GCCTCAACTTGTCCGATGCG 61.971 60.000 0.00 0.00 0.00 4.73
1672 2075 2.109609 CCGATGCGGTCATTTTGATG 57.890 50.000 0.00 0.00 42.73 3.07
1673 2076 1.401552 CCGATGCGGTCATTTTGATGT 59.598 47.619 0.00 0.00 42.73 3.06
1674 2077 2.539547 CCGATGCGGTCATTTTGATGTC 60.540 50.000 0.00 0.00 42.73 3.06
1675 2078 2.352651 CGATGCGGTCATTTTGATGTCT 59.647 45.455 0.00 0.00 31.96 3.41
1676 2079 3.555547 CGATGCGGTCATTTTGATGTCTA 59.444 43.478 0.00 0.00 31.96 2.59
1677 2080 4.033932 CGATGCGGTCATTTTGATGTCTAA 59.966 41.667 0.00 0.00 31.96 2.10
1678 2081 5.447144 CGATGCGGTCATTTTGATGTCTAAA 60.447 40.000 0.00 0.00 31.96 1.85
1679 2082 5.041951 TGCGGTCATTTTGATGTCTAAAC 57.958 39.130 0.00 0.00 0.00 2.01
1680 2083 4.759693 TGCGGTCATTTTGATGTCTAAACT 59.240 37.500 0.00 0.00 0.00 2.66
1681 2084 5.240623 TGCGGTCATTTTGATGTCTAAACTT 59.759 36.000 0.00 0.00 0.00 2.66
1682 2085 5.569059 GCGGTCATTTTGATGTCTAAACTTG 59.431 40.000 0.00 0.00 0.00 3.16
1683 2086 6.668323 CGGTCATTTTGATGTCTAAACTTGT 58.332 36.000 0.00 0.00 0.00 3.16
1684 2087 7.572353 GCGGTCATTTTGATGTCTAAACTTGTA 60.572 37.037 0.00 0.00 0.00 2.41
1685 2088 8.286800 CGGTCATTTTGATGTCTAAACTTGTAA 58.713 33.333 0.00 0.00 0.00 2.41
1686 2089 9.959749 GGTCATTTTGATGTCTAAACTTGTAAA 57.040 29.630 0.00 0.00 0.00 2.01
1704 2107 9.471084 ACTTGTAAAATACACAAAACTAATGCC 57.529 29.630 0.00 0.00 38.63 4.40
1705 2108 8.508800 TTGTAAAATACACAAAACTAATGCCG 57.491 30.769 0.00 0.00 38.63 5.69
1706 2109 7.649973 TGTAAAATACACAAAACTAATGCCGT 58.350 30.769 0.00 0.00 32.89 5.68
1707 2110 8.781196 TGTAAAATACACAAAACTAATGCCGTA 58.219 29.630 0.00 0.00 32.89 4.02
1708 2111 9.609950 GTAAAATACACAAAACTAATGCCGTAA 57.390 29.630 0.00 0.00 0.00 3.18
1709 2112 8.510132 AAAATACACAAAACTAATGCCGTAAC 57.490 30.769 0.00 0.00 0.00 2.50
1710 2113 7.443259 AATACACAAAACTAATGCCGTAACT 57.557 32.000 0.00 0.00 0.00 2.24
1711 2114 5.761165 ACACAAAACTAATGCCGTAACTT 57.239 34.783 0.00 0.00 0.00 2.66
1712 2115 5.516090 ACACAAAACTAATGCCGTAACTTG 58.484 37.500 0.00 0.00 0.00 3.16
1713 2116 5.066764 ACACAAAACTAATGCCGTAACTTGT 59.933 36.000 0.00 0.00 0.00 3.16
1714 2117 5.623673 CACAAAACTAATGCCGTAACTTGTC 59.376 40.000 0.00 0.00 0.00 3.18
1715 2118 5.151389 CAAAACTAATGCCGTAACTTGTCC 58.849 41.667 0.00 0.00 0.00 4.02
1716 2119 2.613691 ACTAATGCCGTAACTTGTCCG 58.386 47.619 0.00 0.00 0.00 4.79
1729 2132 3.541632 ACTTGTCCGACAAAACTGATGT 58.458 40.909 14.74 5.05 37.69 3.06
1747 2150 1.443194 TCGTAACTTGTCCGAGCGC 60.443 57.895 0.00 0.00 0.00 5.92
1821 2224 0.677731 CCAACGTGACATCAGCCCAT 60.678 55.000 0.00 0.00 0.00 4.00
2009 2414 1.870055 CGCTGCAAGGCCTGAAACAT 61.870 55.000 5.69 0.00 0.00 2.71
2067 2475 6.938030 TCTTTTCGGGCTGTAATTTCTTCTTA 59.062 34.615 0.00 0.00 0.00 2.10
2073 2481 8.026607 TCGGGCTGTAATTTCTTCTTATTTTTG 58.973 33.333 0.00 0.00 0.00 2.44
2074 2482 7.275560 CGGGCTGTAATTTCTTCTTATTTTTGG 59.724 37.037 0.00 0.00 0.00 3.28
2075 2483 8.311109 GGGCTGTAATTTCTTCTTATTTTTGGA 58.689 33.333 0.00 0.00 0.00 3.53
2087 2496 8.950007 TTCTTATTTTTGGACTGGGTATCTTT 57.050 30.769 0.00 0.00 0.00 2.52
2088 2497 8.348285 TCTTATTTTTGGACTGGGTATCTTTG 57.652 34.615 0.00 0.00 0.00 2.77
2256 2671 9.815306 ATAGTTGACTGTGTGATATCCTAGTAT 57.185 33.333 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.260869 CCTTCACTGTTGGTGGCGG 61.261 63.158 0.00 0.00 45.38 6.13
1 2 2.260869 CCCTTCACTGTTGGTGGCG 61.261 63.158 0.00 0.00 45.38 5.69
2 3 1.903404 CCCCTTCACTGTTGGTGGC 60.903 63.158 0.00 0.00 45.38 5.01
3 4 0.537371 GTCCCCTTCACTGTTGGTGG 60.537 60.000 0.00 0.00 45.38 4.61
4 5 0.474184 AGTCCCCTTCACTGTTGGTG 59.526 55.000 0.00 0.00 46.60 4.17
5 6 0.474184 CAGTCCCCTTCACTGTTGGT 59.526 55.000 0.00 0.00 37.15 3.67
6 7 0.890996 GCAGTCCCCTTCACTGTTGG 60.891 60.000 2.02 0.00 42.89 3.77
7 8 0.179020 TGCAGTCCCCTTCACTGTTG 60.179 55.000 2.02 0.00 42.89 3.33
8 9 0.773644 ATGCAGTCCCCTTCACTGTT 59.226 50.000 0.00 0.00 42.89 3.16
9 10 0.326264 GATGCAGTCCCCTTCACTGT 59.674 55.000 0.00 0.00 42.89 3.55
10 11 0.325933 TGATGCAGTCCCCTTCACTG 59.674 55.000 0.00 0.00 43.66 3.66
11 12 0.326264 GTGATGCAGTCCCCTTCACT 59.674 55.000 7.03 0.00 35.61 3.41
12 13 0.678048 GGTGATGCAGTCCCCTTCAC 60.678 60.000 5.91 5.91 36.92 3.18
13 14 1.685224 GGTGATGCAGTCCCCTTCA 59.315 57.895 0.00 0.00 0.00 3.02
14 15 1.450312 CGGTGATGCAGTCCCCTTC 60.450 63.158 0.00 0.00 0.00 3.46
15 16 2.671070 CGGTGATGCAGTCCCCTT 59.329 61.111 0.00 0.00 0.00 3.95
16 17 4.101448 GCGGTGATGCAGTCCCCT 62.101 66.667 0.00 0.00 34.15 4.79
17 18 3.628646 AAGCGGTGATGCAGTCCCC 62.629 63.158 0.00 0.00 37.31 4.81
20 21 0.745845 ATCCAAGCGGTGATGCAGTC 60.746 55.000 0.00 0.00 37.31 3.51
23 24 1.815003 CGATCCAAGCGGTGATGCA 60.815 57.895 0.00 0.00 37.31 3.96
34 35 2.231716 TCTCTTCTGTCCCGATCCAA 57.768 50.000 0.00 0.00 0.00 3.53
36 37 1.410882 CCTTCTCTTCTGTCCCGATCC 59.589 57.143 0.00 0.00 0.00 3.36
45 46 5.740290 TGTAGGTTAACCCTTCTCTTCTG 57.260 43.478 21.30 0.00 42.73 3.02
57 58 4.930405 GCTGAAGAGGAGTTGTAGGTTAAC 59.070 45.833 0.00 0.00 0.00 2.01
65 71 1.072806 TGCATGCTGAAGAGGAGTTGT 59.927 47.619 20.33 0.00 0.00 3.32
91 97 2.221906 TTTAGTCCTCCGCGGTGAGC 62.222 60.000 27.84 18.50 43.95 4.26
95 101 1.474332 TTGGTTTAGTCCTCCGCGGT 61.474 55.000 27.15 7.91 0.00 5.68
144 150 5.769662 ACTGCAAATTGTATTTCTGAGACCA 59.230 36.000 0.00 0.00 0.00 4.02
149 155 7.809331 GTGATTGACTGCAAATTGTATTTCTGA 59.191 33.333 0.00 0.00 37.59 3.27
150 156 7.595875 TGTGATTGACTGCAAATTGTATTTCTG 59.404 33.333 0.00 0.00 37.59 3.02
151 157 7.596248 GTGTGATTGACTGCAAATTGTATTTCT 59.404 33.333 0.00 0.00 37.59 2.52
152 158 7.381948 TGTGTGATTGACTGCAAATTGTATTTC 59.618 33.333 0.00 0.00 37.59 2.17
156 162 5.518812 GTGTGTGATTGACTGCAAATTGTA 58.481 37.500 0.00 0.00 37.59 2.41
180 187 9.827411 CTTCAAATTGCTAAGTTTTACTACTCC 57.173 33.333 0.00 0.00 0.00 3.85
181 188 9.331106 GCTTCAAATTGCTAAGTTTTACTACTC 57.669 33.333 0.00 0.00 0.00 2.59
212 219 5.629079 AAATCCGGCTAAGTTTCTTGAAG 57.371 39.130 0.00 0.00 0.00 3.02
227 234 4.286032 TGACCCTTGATATCCTAAATCCGG 59.714 45.833 0.00 0.00 0.00 5.14
236 246 6.038714 GTGTTTCTGATTGACCCTTGATATCC 59.961 42.308 0.00 0.00 0.00 2.59
249 262 6.091441 GGAGTAGCTGTTAGTGTTTCTGATTG 59.909 42.308 0.00 0.00 0.00 2.67
263 276 0.971447 GGACGGAGGGAGTAGCTGTT 60.971 60.000 0.00 0.00 0.00 3.16
279 292 1.338655 GAGCTCATTCTACTCCGGGAC 59.661 57.143 9.40 0.00 0.00 4.46
280 293 1.063942 TGAGCTCATTCTACTCCGGGA 60.064 52.381 13.74 0.00 0.00 5.14
283 296 4.109050 GTCTTTGAGCTCATTCTACTCCG 58.891 47.826 19.04 0.00 0.00 4.63
284 297 5.337578 AGTCTTTGAGCTCATTCTACTCC 57.662 43.478 19.04 0.73 0.00 3.85
285 298 5.034152 CGAGTCTTTGAGCTCATTCTACTC 58.966 45.833 24.77 24.77 0.00 2.59
293 313 3.119316 GGATTCTCGAGTCTTTGAGCTCA 60.119 47.826 13.74 13.74 35.18 4.26
300 320 4.156739 GCCAAATTGGATTCTCGAGTCTTT 59.843 41.667 17.47 0.00 40.96 2.52
330 378 1.722851 TCTGGGAAGGAGGGAGTACTT 59.277 52.381 0.00 0.00 0.00 2.24
332 380 2.436173 CAATCTGGGAAGGAGGGAGTAC 59.564 54.545 0.00 0.00 0.00 2.73
333 381 2.045885 ACAATCTGGGAAGGAGGGAGTA 59.954 50.000 0.00 0.00 0.00 2.59
334 382 1.203492 ACAATCTGGGAAGGAGGGAGT 60.203 52.381 0.00 0.00 0.00 3.85
335 383 1.589414 ACAATCTGGGAAGGAGGGAG 58.411 55.000 0.00 0.00 0.00 4.30
336 384 2.059756 AACAATCTGGGAAGGAGGGA 57.940 50.000 0.00 0.00 0.00 4.20
338 386 2.422093 GCCTAACAATCTGGGAAGGAGG 60.422 54.545 0.00 0.00 0.00 4.30
339 387 2.743183 CGCCTAACAATCTGGGAAGGAG 60.743 54.545 0.00 0.00 0.00 3.69
340 388 1.209504 CGCCTAACAATCTGGGAAGGA 59.790 52.381 0.00 0.00 0.00 3.36
341 389 1.065418 ACGCCTAACAATCTGGGAAGG 60.065 52.381 0.00 0.00 0.00 3.46
342 390 2.403252 ACGCCTAACAATCTGGGAAG 57.597 50.000 0.00 0.00 0.00 3.46
343 391 4.497291 AATACGCCTAACAATCTGGGAA 57.503 40.909 0.00 0.00 0.00 3.97
344 392 4.652421 ACTAATACGCCTAACAATCTGGGA 59.348 41.667 0.00 0.00 0.00 4.37
345 393 4.957296 ACTAATACGCCTAACAATCTGGG 58.043 43.478 0.00 0.00 0.00 4.45
346 394 5.844004 AGACTAATACGCCTAACAATCTGG 58.156 41.667 0.00 0.00 0.00 3.86
347 395 7.772332 AAAGACTAATACGCCTAACAATCTG 57.228 36.000 0.00 0.00 0.00 2.90
348 396 7.652507 GCTAAAGACTAATACGCCTAACAATCT 59.347 37.037 0.00 0.00 0.00 2.40
349 397 7.437267 TGCTAAAGACTAATACGCCTAACAATC 59.563 37.037 0.00 0.00 0.00 2.67
350 398 7.224167 GTGCTAAAGACTAATACGCCTAACAAT 59.776 37.037 0.00 0.00 0.00 2.71
351 399 6.532657 GTGCTAAAGACTAATACGCCTAACAA 59.467 38.462 0.00 0.00 0.00 2.83
352 400 6.038356 GTGCTAAAGACTAATACGCCTAACA 58.962 40.000 0.00 0.00 0.00 2.41
353 401 5.172771 CGTGCTAAAGACTAATACGCCTAAC 59.827 44.000 0.00 0.00 0.00 2.34
354 402 5.066375 TCGTGCTAAAGACTAATACGCCTAA 59.934 40.000 0.00 0.00 0.00 2.69
355 403 4.576053 TCGTGCTAAAGACTAATACGCCTA 59.424 41.667 0.00 0.00 0.00 3.93
356 404 3.379372 TCGTGCTAAAGACTAATACGCCT 59.621 43.478 0.00 0.00 0.00 5.52
357 405 3.699067 TCGTGCTAAAGACTAATACGCC 58.301 45.455 0.00 0.00 0.00 5.68
358 406 5.691508 TTTCGTGCTAAAGACTAATACGC 57.308 39.130 0.00 0.00 0.00 4.42
359 407 9.831054 CTAATTTTCGTGCTAAAGACTAATACG 57.169 33.333 0.00 0.00 0.00 3.06
360 408 9.634300 GCTAATTTTCGTGCTAAAGACTAATAC 57.366 33.333 0.00 0.00 0.00 1.89
361 409 8.537223 CGCTAATTTTCGTGCTAAAGACTAATA 58.463 33.333 0.00 0.00 0.00 0.98
362 410 7.064253 ACGCTAATTTTCGTGCTAAAGACTAAT 59.936 33.333 4.25 0.00 37.55 1.73
363 411 6.366877 ACGCTAATTTTCGTGCTAAAGACTAA 59.633 34.615 4.25 0.00 37.55 2.24
364 412 5.865552 ACGCTAATTTTCGTGCTAAAGACTA 59.134 36.000 4.25 0.00 37.55 2.59
365 413 4.689345 ACGCTAATTTTCGTGCTAAAGACT 59.311 37.500 4.25 0.00 37.55 3.24
366 414 4.954442 ACGCTAATTTTCGTGCTAAAGAC 58.046 39.130 4.25 0.00 37.55 3.01
367 415 5.220080 CGTACGCTAATTTTCGTGCTAAAGA 60.220 40.000 0.52 0.00 38.76 2.52
368 416 4.947933 CGTACGCTAATTTTCGTGCTAAAG 59.052 41.667 0.52 0.00 38.76 1.85
369 417 4.385447 ACGTACGCTAATTTTCGTGCTAAA 59.615 37.500 16.72 0.00 38.76 1.85
370 418 3.919804 ACGTACGCTAATTTTCGTGCTAA 59.080 39.130 16.72 0.00 38.76 3.09
371 419 3.301379 CACGTACGCTAATTTTCGTGCTA 59.699 43.478 16.72 0.00 41.04 3.49
372 420 2.091588 CACGTACGCTAATTTTCGTGCT 59.908 45.455 16.72 0.00 41.04 4.40
373 421 2.414985 CACGTACGCTAATTTTCGTGC 58.585 47.619 16.72 10.96 41.04 5.34
374 422 2.662637 TCCACGTACGCTAATTTTCGTG 59.337 45.455 16.72 8.24 44.94 4.35
375 423 2.945278 TCCACGTACGCTAATTTTCGT 58.055 42.857 16.72 9.15 42.09 3.85
376 424 4.509915 AATCCACGTACGCTAATTTTCG 57.490 40.909 16.72 0.00 0.00 3.46
377 425 8.831000 ATAAAAATCCACGTACGCTAATTTTC 57.169 30.769 23.55 0.00 0.00 2.29
378 426 9.628746 AAATAAAAATCCACGTACGCTAATTTT 57.371 25.926 16.72 19.11 0.00 1.82
379 427 9.068008 CAAATAAAAATCCACGTACGCTAATTT 57.932 29.630 16.72 14.63 0.00 1.82
380 428 8.452534 TCAAATAAAAATCCACGTACGCTAATT 58.547 29.630 16.72 9.33 0.00 1.40
381 429 7.906527 GTCAAATAAAAATCCACGTACGCTAAT 59.093 33.333 16.72 2.95 0.00 1.73
382 430 7.235777 GTCAAATAAAAATCCACGTACGCTAA 58.764 34.615 16.72 0.22 0.00 3.09
383 431 6.183360 GGTCAAATAAAAATCCACGTACGCTA 60.183 38.462 16.72 0.59 0.00 4.26
384 432 5.391203 GGTCAAATAAAAATCCACGTACGCT 60.391 40.000 16.72 0.00 0.00 5.07
385 433 4.789629 GGTCAAATAAAAATCCACGTACGC 59.210 41.667 16.72 0.00 0.00 4.42
386 434 5.106634 TGGGTCAAATAAAAATCCACGTACG 60.107 40.000 15.01 15.01 0.00 3.67
387 435 6.256912 TGGGTCAAATAAAAATCCACGTAC 57.743 37.500 0.00 0.00 0.00 3.67
388 436 6.183360 CGATGGGTCAAATAAAAATCCACGTA 60.183 38.462 0.00 0.00 0.00 3.57
389 437 5.392595 CGATGGGTCAAATAAAAATCCACGT 60.393 40.000 0.00 0.00 0.00 4.49
390 438 5.034152 CGATGGGTCAAATAAAAATCCACG 58.966 41.667 0.00 0.00 0.00 4.94
391 439 5.961272 ACGATGGGTCAAATAAAAATCCAC 58.039 37.500 0.00 0.00 0.00 4.02
392 440 6.659668 TGTACGATGGGTCAAATAAAAATCCA 59.340 34.615 0.00 0.00 0.00 3.41
393 441 7.090953 TGTACGATGGGTCAAATAAAAATCC 57.909 36.000 0.00 0.00 0.00 3.01
394 442 8.241367 ACTTGTACGATGGGTCAAATAAAAATC 58.759 33.333 0.00 0.00 0.00 2.17
395 443 8.117813 ACTTGTACGATGGGTCAAATAAAAAT 57.882 30.769 0.00 0.00 0.00 1.82
396 444 7.513371 ACTTGTACGATGGGTCAAATAAAAA 57.487 32.000 0.00 0.00 0.00 1.94
397 445 7.013464 ACAACTTGTACGATGGGTCAAATAAAA 59.987 33.333 0.00 0.00 0.00 1.52
398 446 6.487331 ACAACTTGTACGATGGGTCAAATAAA 59.513 34.615 0.00 0.00 0.00 1.40
399 447 5.998981 ACAACTTGTACGATGGGTCAAATAA 59.001 36.000 0.00 0.00 0.00 1.40
400 448 5.553123 ACAACTTGTACGATGGGTCAAATA 58.447 37.500 0.00 0.00 0.00 1.40
401 449 4.394729 ACAACTTGTACGATGGGTCAAAT 58.605 39.130 0.00 0.00 0.00 2.32
402 450 3.811083 ACAACTTGTACGATGGGTCAAA 58.189 40.909 0.00 0.00 0.00 2.69
403 451 3.478857 ACAACTTGTACGATGGGTCAA 57.521 42.857 0.00 0.00 0.00 3.18
404 452 3.916761 GTACAACTTGTACGATGGGTCA 58.083 45.455 14.79 0.00 42.99 4.02
414 462 4.709250 TGCCTTCATGTGTACAACTTGTA 58.291 39.130 0.00 0.00 35.82 2.41
415 463 3.550820 TGCCTTCATGTGTACAACTTGT 58.449 40.909 0.00 0.00 35.82 3.16
416 464 4.566545 TTGCCTTCATGTGTACAACTTG 57.433 40.909 0.00 1.41 35.70 3.16
417 465 4.826733 TGATTGCCTTCATGTGTACAACTT 59.173 37.500 0.00 0.00 0.00 2.66
418 466 4.216257 GTGATTGCCTTCATGTGTACAACT 59.784 41.667 0.00 0.00 0.00 3.16
419 467 4.475944 GTGATTGCCTTCATGTGTACAAC 58.524 43.478 0.00 0.00 0.00 3.32
420 468 3.188254 CGTGATTGCCTTCATGTGTACAA 59.812 43.478 0.00 0.00 0.00 2.41
421 469 2.741517 CGTGATTGCCTTCATGTGTACA 59.258 45.455 0.00 0.00 0.00 2.90
422 470 3.000041 TCGTGATTGCCTTCATGTGTAC 59.000 45.455 0.00 0.00 34.79 2.90
423 471 3.326836 TCGTGATTGCCTTCATGTGTA 57.673 42.857 0.00 0.00 34.79 2.90
424 472 2.183478 TCGTGATTGCCTTCATGTGT 57.817 45.000 0.00 0.00 34.79 3.72
425 473 3.127376 TGAATCGTGATTGCCTTCATGTG 59.873 43.478 0.00 0.00 34.79 3.21
426 474 3.346315 TGAATCGTGATTGCCTTCATGT 58.654 40.909 0.00 0.00 34.79 3.21
427 475 4.359971 TTGAATCGTGATTGCCTTCATG 57.640 40.909 0.00 0.00 34.55 3.07
428 476 5.389859 TTTTGAATCGTGATTGCCTTCAT 57.610 34.783 0.00 0.00 0.00 2.57
429 477 4.844998 TTTTGAATCGTGATTGCCTTCA 57.155 36.364 0.00 0.00 0.00 3.02
448 496 3.823304 GTGGATGCCTCTCACTTCTTTTT 59.177 43.478 4.25 0.00 0.00 1.94
449 497 3.416156 GTGGATGCCTCTCACTTCTTTT 58.584 45.455 4.25 0.00 0.00 2.27
450 498 2.613977 CGTGGATGCCTCTCACTTCTTT 60.614 50.000 8.25 0.00 0.00 2.52
451 499 1.066573 CGTGGATGCCTCTCACTTCTT 60.067 52.381 8.25 0.00 0.00 2.52
452 500 0.534412 CGTGGATGCCTCTCACTTCT 59.466 55.000 8.25 0.00 0.00 2.85
453 501 0.532573 TCGTGGATGCCTCTCACTTC 59.467 55.000 8.25 0.00 0.00 3.01
454 502 1.137872 GATCGTGGATGCCTCTCACTT 59.862 52.381 8.25 0.00 0.00 3.16
455 503 0.749649 GATCGTGGATGCCTCTCACT 59.250 55.000 8.25 0.00 0.00 3.41
456 504 0.749649 AGATCGTGGATGCCTCTCAC 59.250 55.000 0.00 0.00 0.00 3.51
457 505 1.410517 GAAGATCGTGGATGCCTCTCA 59.589 52.381 0.00 0.00 0.00 3.27
458 506 1.686052 AGAAGATCGTGGATGCCTCTC 59.314 52.381 0.00 0.00 0.00 3.20
459 507 1.786937 AGAAGATCGTGGATGCCTCT 58.213 50.000 0.00 0.00 0.00 3.69
460 508 2.611225 AAGAAGATCGTGGATGCCTC 57.389 50.000 0.00 0.00 0.00 4.70
461 509 2.420687 GGAAAGAAGATCGTGGATGCCT 60.421 50.000 0.00 0.00 0.00 4.75
462 510 1.943340 GGAAAGAAGATCGTGGATGCC 59.057 52.381 0.00 0.00 0.00 4.40
463 511 2.632377 TGGAAAGAAGATCGTGGATGC 58.368 47.619 0.00 0.00 0.00 3.91
464 512 5.824904 AATTGGAAAGAAGATCGTGGATG 57.175 39.130 0.00 0.00 0.00 3.51
465 513 7.938140 TTTAATTGGAAAGAAGATCGTGGAT 57.062 32.000 0.00 0.00 0.00 3.41
466 514 7.938140 ATTTAATTGGAAAGAAGATCGTGGA 57.062 32.000 0.00 0.00 0.00 4.02
467 515 9.669353 CATATTTAATTGGAAAGAAGATCGTGG 57.331 33.333 0.00 0.00 0.00 4.94
468 516 9.669353 CCATATTTAATTGGAAAGAAGATCGTG 57.331 33.333 0.00 0.00 34.81 4.35
469 517 9.627123 TCCATATTTAATTGGAAAGAAGATCGT 57.373 29.630 6.45 0.00 39.05 3.73
470 518 9.884465 GTCCATATTTAATTGGAAAGAAGATCG 57.116 33.333 9.31 0.00 43.42 3.69
472 520 9.713684 TGGTCCATATTTAATTGGAAAGAAGAT 57.286 29.630 9.31 0.00 43.42 2.40
473 521 9.713684 ATGGTCCATATTTAATTGGAAAGAAGA 57.286 29.630 1.24 0.00 43.42 2.87
477 525 9.696917 GCTAATGGTCCATATTTAATTGGAAAG 57.303 33.333 4.33 5.60 43.42 2.62
478 526 9.432982 AGCTAATGGTCCATATTTAATTGGAAA 57.567 29.630 4.33 4.13 43.42 3.13
479 527 9.432982 AAGCTAATGGTCCATATTTAATTGGAA 57.567 29.630 4.33 0.00 43.42 3.53
487 535 9.646522 AATCAGTTAAGCTAATGGTCCATATTT 57.353 29.630 4.33 0.57 0.00 1.40
488 536 9.646522 AAATCAGTTAAGCTAATGGTCCATATT 57.353 29.630 4.33 1.18 0.00 1.28
490 538 9.778741 CTAAATCAGTTAAGCTAATGGTCCATA 57.221 33.333 4.33 0.00 0.00 2.74
491 539 8.494433 TCTAAATCAGTTAAGCTAATGGTCCAT 58.506 33.333 0.00 0.00 0.00 3.41
492 540 7.857456 TCTAAATCAGTTAAGCTAATGGTCCA 58.143 34.615 0.00 0.00 0.00 4.02
493 541 8.204836 TCTCTAAATCAGTTAAGCTAATGGTCC 58.795 37.037 0.00 0.00 0.00 4.46
494 542 9.255304 CTCTCTAAATCAGTTAAGCTAATGGTC 57.745 37.037 0.00 0.00 0.00 4.02
495 543 8.207545 CCTCTCTAAATCAGTTAAGCTAATGGT 58.792 37.037 0.00 0.00 0.00 3.55
496 544 8.424918 TCCTCTCTAAATCAGTTAAGCTAATGG 58.575 37.037 0.00 0.00 0.00 3.16
497 545 9.823647 TTCCTCTCTAAATCAGTTAAGCTAATG 57.176 33.333 0.00 0.00 0.00 1.90
499 547 8.478877 CCTTCCTCTCTAAATCAGTTAAGCTAA 58.521 37.037 0.00 0.00 0.00 3.09
500 548 7.418025 GCCTTCCTCTCTAAATCAGTTAAGCTA 60.418 40.741 0.00 0.00 0.00 3.32
501 549 6.631540 GCCTTCCTCTCTAAATCAGTTAAGCT 60.632 42.308 0.00 0.00 0.00 3.74
502 550 5.525745 GCCTTCCTCTCTAAATCAGTTAAGC 59.474 44.000 0.00 0.00 0.00 3.09
503 551 6.644347 TGCCTTCCTCTCTAAATCAGTTAAG 58.356 40.000 0.00 0.00 0.00 1.85
504 552 6.620877 TGCCTTCCTCTCTAAATCAGTTAA 57.379 37.500 0.00 0.00 0.00 2.01
505 553 6.156949 ACATGCCTTCCTCTCTAAATCAGTTA 59.843 38.462 0.00 0.00 0.00 2.24
506 554 5.045286 ACATGCCTTCCTCTCTAAATCAGTT 60.045 40.000 0.00 0.00 0.00 3.16
507 555 4.472833 ACATGCCTTCCTCTCTAAATCAGT 59.527 41.667 0.00 0.00 0.00 3.41
508 556 4.815308 CACATGCCTTCCTCTCTAAATCAG 59.185 45.833 0.00 0.00 0.00 2.90
509 557 4.774124 CACATGCCTTCCTCTCTAAATCA 58.226 43.478 0.00 0.00 0.00 2.57
510 558 3.563390 GCACATGCCTTCCTCTCTAAATC 59.437 47.826 0.00 0.00 34.31 2.17
511 559 3.549794 GCACATGCCTTCCTCTCTAAAT 58.450 45.455 0.00 0.00 34.31 1.40
512 560 2.677902 CGCACATGCCTTCCTCTCTAAA 60.678 50.000 0.00 0.00 37.91 1.85
513 561 1.134699 CGCACATGCCTTCCTCTCTAA 60.135 52.381 0.00 0.00 37.91 2.10
514 562 0.461548 CGCACATGCCTTCCTCTCTA 59.538 55.000 0.00 0.00 37.91 2.43
515 563 1.220206 CGCACATGCCTTCCTCTCT 59.780 57.895 0.00 0.00 37.91 3.10
516 564 2.467826 GCGCACATGCCTTCCTCTC 61.468 63.158 0.30 0.00 37.91 3.20
517 565 2.437359 GCGCACATGCCTTCCTCT 60.437 61.111 0.30 0.00 37.91 3.69
525 573 2.095567 CCATATTCTAAGGCGCACATGC 60.096 50.000 10.83 0.00 37.78 4.06
526 574 2.485426 CCCATATTCTAAGGCGCACATG 59.515 50.000 10.83 0.00 0.00 3.21
527 575 2.371841 TCCCATATTCTAAGGCGCACAT 59.628 45.455 10.83 0.00 0.00 3.21
528 576 1.765904 TCCCATATTCTAAGGCGCACA 59.234 47.619 10.83 0.00 0.00 4.57
529 577 2.543777 TCCCATATTCTAAGGCGCAC 57.456 50.000 10.83 0.00 0.00 5.34
530 578 3.411446 CAATCCCATATTCTAAGGCGCA 58.589 45.455 10.83 0.00 0.00 6.09
531 579 2.162408 GCAATCCCATATTCTAAGGCGC 59.838 50.000 0.00 0.00 0.00 6.53
532 580 3.411446 TGCAATCCCATATTCTAAGGCG 58.589 45.455 0.00 0.00 0.00 5.52
533 581 4.381292 GCATGCAATCCCATATTCTAAGGC 60.381 45.833 14.21 0.00 0.00 4.35
534 582 4.768448 TGCATGCAATCCCATATTCTAAGG 59.232 41.667 20.30 0.00 0.00 2.69
535 583 5.708697 TCTGCATGCAATCCCATATTCTAAG 59.291 40.000 22.88 3.94 0.00 2.18
536 584 5.633117 TCTGCATGCAATCCCATATTCTAA 58.367 37.500 22.88 0.00 0.00 2.10
537 585 5.245584 TCTGCATGCAATCCCATATTCTA 57.754 39.130 22.88 0.00 0.00 2.10
538 586 4.108501 TCTGCATGCAATCCCATATTCT 57.891 40.909 22.88 0.00 0.00 2.40
539 587 4.859304 TTCTGCATGCAATCCCATATTC 57.141 40.909 22.88 0.00 0.00 1.75
540 588 4.652421 AGTTTCTGCATGCAATCCCATATT 59.348 37.500 22.88 0.00 0.00 1.28
541 589 4.220724 AGTTTCTGCATGCAATCCCATAT 58.779 39.130 22.88 0.18 0.00 1.78
542 590 3.634504 AGTTTCTGCATGCAATCCCATA 58.365 40.909 22.88 0.13 0.00 2.74
543 591 2.463752 AGTTTCTGCATGCAATCCCAT 58.536 42.857 22.88 3.47 0.00 4.00
544 592 1.927487 AGTTTCTGCATGCAATCCCA 58.073 45.000 22.88 1.09 0.00 4.37
545 593 4.454728 TTAAGTTTCTGCATGCAATCCC 57.545 40.909 22.88 10.17 0.00 3.85
546 594 4.324402 CGTTTAAGTTTCTGCATGCAATCC 59.676 41.667 22.88 9.80 0.00 3.01
547 595 4.201523 GCGTTTAAGTTTCTGCATGCAATC 60.202 41.667 22.88 11.76 0.00 2.67
548 596 3.674753 GCGTTTAAGTTTCTGCATGCAAT 59.325 39.130 22.88 6.44 0.00 3.56
549 597 3.049206 GCGTTTAAGTTTCTGCATGCAA 58.951 40.909 22.88 10.06 0.00 4.08
550 598 2.606795 GGCGTTTAAGTTTCTGCATGCA 60.607 45.455 21.29 21.29 0.00 3.96
551 599 1.985684 GGCGTTTAAGTTTCTGCATGC 59.014 47.619 11.82 11.82 0.00 4.06
552 600 2.030363 TGGGCGTTTAAGTTTCTGCATG 60.030 45.455 0.00 0.00 0.00 4.06
553 601 2.235016 TGGGCGTTTAAGTTTCTGCAT 58.765 42.857 0.00 0.00 0.00 3.96
554 602 1.681538 TGGGCGTTTAAGTTTCTGCA 58.318 45.000 0.00 0.00 0.00 4.41
555 603 2.292292 TCTTGGGCGTTTAAGTTTCTGC 59.708 45.455 0.00 0.00 0.00 4.26
556 604 4.766404 ATCTTGGGCGTTTAAGTTTCTG 57.234 40.909 0.00 0.00 0.00 3.02
557 605 5.784578 AAATCTTGGGCGTTTAAGTTTCT 57.215 34.783 0.00 0.00 0.00 2.52
558 606 6.210396 CAAAATCTTGGGCGTTTAAGTTTC 57.790 37.500 0.00 0.00 0.00 2.78
572 620 3.245407 ACTCCCTCCTTCCCAAAATCTTG 60.245 47.826 0.00 0.00 0.00 3.02
573 621 2.996742 ACTCCCTCCTTCCCAAAATCTT 59.003 45.455 0.00 0.00 0.00 2.40
574 622 2.648838 ACTCCCTCCTTCCCAAAATCT 58.351 47.619 0.00 0.00 0.00 2.40
575 623 4.797912 ATACTCCCTCCTTCCCAAAATC 57.202 45.455 0.00 0.00 0.00 2.17
576 624 5.458215 GCATATACTCCCTCCTTCCCAAAAT 60.458 44.000 0.00 0.00 0.00 1.82
577 625 4.141251 GCATATACTCCCTCCTTCCCAAAA 60.141 45.833 0.00 0.00 0.00 2.44
578 626 3.394606 GCATATACTCCCTCCTTCCCAAA 59.605 47.826 0.00 0.00 0.00 3.28
579 627 2.979678 GCATATACTCCCTCCTTCCCAA 59.020 50.000 0.00 0.00 0.00 4.12
580 628 2.182312 AGCATATACTCCCTCCTTCCCA 59.818 50.000 0.00 0.00 0.00 4.37
581 629 2.835156 GAGCATATACTCCCTCCTTCCC 59.165 54.545 0.00 0.00 0.00 3.97
582 630 3.511477 TGAGCATATACTCCCTCCTTCC 58.489 50.000 0.34 0.00 35.72 3.46
583 631 4.622695 GCATGAGCATATACTCCCTCCTTC 60.623 50.000 0.00 0.00 41.58 3.46
584 632 3.262915 GCATGAGCATATACTCCCTCCTT 59.737 47.826 0.00 0.00 41.58 3.36
585 633 2.836981 GCATGAGCATATACTCCCTCCT 59.163 50.000 0.00 0.00 41.58 3.69
586 634 2.417924 CGCATGAGCATATACTCCCTCC 60.418 54.545 0.00 0.00 42.27 4.30
587 635 2.886081 CGCATGAGCATATACTCCCTC 58.114 52.381 0.00 0.00 42.27 4.30
588 636 1.066573 GCGCATGAGCATATACTCCCT 60.067 52.381 17.16 0.00 42.27 4.20
589 637 1.363744 GCGCATGAGCATATACTCCC 58.636 55.000 17.16 0.00 42.27 4.30
590 638 0.994995 CGCGCATGAGCATATACTCC 59.005 55.000 21.59 0.00 42.27 3.85
591 639 0.368227 GCGCGCATGAGCATATACTC 59.632 55.000 29.10 0.00 41.01 2.59
592 640 1.016130 GGCGCGCATGAGCATATACT 61.016 55.000 34.42 0.00 43.42 2.12
593 641 1.016130 AGGCGCGCATGAGCATATAC 61.016 55.000 34.42 10.63 43.42 1.47
594 642 0.530288 TAGGCGCGCATGAGCATATA 59.470 50.000 34.42 4.64 43.42 0.86
647 695 5.689961 GGTAGCGACAATGAACACAATTTTT 59.310 36.000 0.00 0.00 0.00 1.94
651 699 3.674997 AGGTAGCGACAATGAACACAAT 58.325 40.909 0.00 0.00 0.00 2.71
652 700 3.120321 AGGTAGCGACAATGAACACAA 57.880 42.857 0.00 0.00 0.00 3.33
711 775 7.810282 TGTGGGTAACATTTATCGTTCAATTTG 59.190 33.333 0.00 0.00 32.36 2.32
712 776 7.887381 TGTGGGTAACATTTATCGTTCAATTT 58.113 30.769 0.00 0.00 32.36 1.82
715 779 6.487331 ACTTGTGGGTAACATTTATCGTTCAA 59.513 34.615 0.00 0.00 38.99 2.69
717 781 6.072893 ACACTTGTGGGTAACATTTATCGTTC 60.073 38.462 5.72 0.00 38.99 3.95
720 784 5.873179 ACACTTGTGGGTAACATTTATCG 57.127 39.130 5.72 0.00 38.99 2.92
723 788 7.055378 AGTGTAACACTTGTGGGTAACATTTA 58.945 34.615 5.72 0.00 42.59 1.40
837 1077 1.133982 ACGTAGCTCGAGTCGACTAGA 59.866 52.381 24.24 24.24 42.86 2.43
847 1087 3.807538 GGGCGACACGTAGCTCGA 61.808 66.667 12.25 0.00 42.86 4.04
991 1232 4.383118 CCCATGGATTTATACGAGCTAGGG 60.383 50.000 15.22 0.00 0.00 3.53
1028 1269 0.460284 GTGTGTGCGTCCCTATCCAG 60.460 60.000 0.00 0.00 0.00 3.86
1040 1281 0.577269 GACAACGAGTGAGTGTGTGC 59.423 55.000 0.00 0.00 0.00 4.57
1058 1301 2.954318 TGCTCGATCTGATGAGTGATGA 59.046 45.455 14.33 0.00 34.67 2.92
1059 1302 3.366440 TGCTCGATCTGATGAGTGATG 57.634 47.619 14.33 0.00 34.67 3.07
1060 1303 3.056678 GGATGCTCGATCTGATGAGTGAT 60.057 47.826 14.33 9.35 34.67 3.06
1061 1304 2.295629 GGATGCTCGATCTGATGAGTGA 59.704 50.000 14.33 6.35 34.67 3.41
1062 1305 2.035576 TGGATGCTCGATCTGATGAGTG 59.964 50.000 14.33 4.23 34.67 3.51
1063 1306 2.314246 TGGATGCTCGATCTGATGAGT 58.686 47.619 14.33 1.76 34.67 3.41
1064 1307 3.382048 TTGGATGCTCGATCTGATGAG 57.618 47.619 0.00 4.02 35.30 2.90
1101 1344 1.268896 CCATTGCTCACATGCGGATTC 60.269 52.381 0.00 0.00 35.36 2.52
1110 1353 2.046023 CCGCCTCCATTGCTCACA 60.046 61.111 0.00 0.00 0.00 3.58
1340 1600 1.118965 TTCAGGTGCTCAGTCGGGAA 61.119 55.000 0.00 0.00 0.00 3.97
1348 1608 1.227943 GTGCAGGTTCAGGTGCTCA 60.228 57.895 0.00 0.00 40.54 4.26
1536 1935 9.362151 AGAGTACCAACTTTATTCATTTTTCCA 57.638 29.630 0.00 0.00 35.56 3.53
1554 1954 1.674817 GCCAGCGCTTTTAGAGTACCA 60.675 52.381 7.50 0.00 0.00 3.25
1556 1956 1.722011 TGCCAGCGCTTTTAGAGTAC 58.278 50.000 7.50 0.00 35.36 2.73
1557 1957 2.465860 TTGCCAGCGCTTTTAGAGTA 57.534 45.000 7.50 0.00 35.36 2.59
1559 1959 1.730446 GCTTTGCCAGCGCTTTTAGAG 60.730 52.381 7.50 4.71 39.29 2.43
1560 1960 0.240945 GCTTTGCCAGCGCTTTTAGA 59.759 50.000 7.50 0.00 39.29 2.10
1561 1961 2.729378 GCTTTGCCAGCGCTTTTAG 58.271 52.632 7.50 2.01 39.29 1.85
1586 1986 9.438228 TGGACGAAAACTATTACATTATGTTGA 57.562 29.630 2.23 0.00 0.00 3.18
1619 2022 6.043590 AGGCATCCATGATGTATTTGACTCTA 59.956 38.462 0.00 0.00 41.60 2.43
1620 2023 5.068636 GGCATCCATGATGTATTTGACTCT 58.931 41.667 0.00 0.00 41.60 3.24
1621 2024 5.068636 AGGCATCCATGATGTATTTGACTC 58.931 41.667 0.00 0.00 41.60 3.36
1622 2025 5.057843 AGGCATCCATGATGTATTTGACT 57.942 39.130 0.00 0.00 41.60 3.41
1623 2026 4.823442 TGAGGCATCCATGATGTATTTGAC 59.177 41.667 0.00 0.00 41.60 3.18
1624 2027 5.051409 TGAGGCATCCATGATGTATTTGA 57.949 39.130 0.00 0.00 41.60 2.69
1625 2028 5.301045 AGTTGAGGCATCCATGATGTATTTG 59.699 40.000 0.00 0.00 41.60 2.32
1626 2029 5.452255 AGTTGAGGCATCCATGATGTATTT 58.548 37.500 0.00 0.00 41.60 1.40
1627 2030 5.057843 AGTTGAGGCATCCATGATGTATT 57.942 39.130 0.00 0.00 41.60 1.89
1628 2031 4.719026 AGTTGAGGCATCCATGATGTAT 57.281 40.909 0.00 0.00 41.60 2.29
1629 2032 4.201657 CAAGTTGAGGCATCCATGATGTA 58.798 43.478 0.00 0.00 41.60 2.29
1630 2033 3.021695 CAAGTTGAGGCATCCATGATGT 58.978 45.455 0.00 0.00 41.60 3.06
1631 2034 3.021695 ACAAGTTGAGGCATCCATGATG 58.978 45.455 10.54 0.00 42.37 3.07
1632 2035 3.285484 GACAAGTTGAGGCATCCATGAT 58.715 45.455 10.54 0.00 0.00 2.45
1633 2036 2.618816 GGACAAGTTGAGGCATCCATGA 60.619 50.000 10.54 0.00 0.00 3.07
1634 2037 1.747355 GGACAAGTTGAGGCATCCATG 59.253 52.381 10.54 0.00 0.00 3.66
1635 2038 1.679944 CGGACAAGTTGAGGCATCCAT 60.680 52.381 10.54 0.00 0.00 3.41
1636 2039 0.321564 CGGACAAGTTGAGGCATCCA 60.322 55.000 10.54 0.00 0.00 3.41
1637 2040 0.036388 TCGGACAAGTTGAGGCATCC 60.036 55.000 10.54 4.62 0.00 3.51
1638 2041 1.667724 CATCGGACAAGTTGAGGCATC 59.332 52.381 10.54 0.00 0.00 3.91
1639 2042 1.742761 CATCGGACAAGTTGAGGCAT 58.257 50.000 10.54 0.00 0.00 4.40
1640 2043 0.955428 GCATCGGACAAGTTGAGGCA 60.955 55.000 10.54 0.00 39.09 4.75
1641 2044 1.796796 GCATCGGACAAGTTGAGGC 59.203 57.895 10.54 0.00 31.99 4.70
1642 2045 2.081526 CGCATCGGACAAGTTGAGG 58.918 57.895 10.54 0.00 0.00 3.86
1651 2054 5.024133 ACATCAAAATGACCGCATCGGAC 62.024 47.826 12.60 6.52 41.92 4.79
1652 2055 2.939198 ACATCAAAATGACCGCATCGGA 60.939 45.455 12.60 0.00 41.92 4.55
1653 2056 1.401552 ACATCAAAATGACCGCATCGG 59.598 47.619 3.42 3.42 43.53 4.18
1654 2057 2.352651 AGACATCAAAATGACCGCATCG 59.647 45.455 0.00 0.00 36.67 3.84
1655 2058 5.484173 TTAGACATCAAAATGACCGCATC 57.516 39.130 0.00 0.00 36.67 3.91
1656 2059 5.415701 AGTTTAGACATCAAAATGACCGCAT 59.584 36.000 0.00 0.00 36.67 4.73
1657 2060 4.759693 AGTTTAGACATCAAAATGACCGCA 59.240 37.500 0.00 0.00 36.67 5.69
1658 2061 5.296813 AGTTTAGACATCAAAATGACCGC 57.703 39.130 0.00 0.00 36.67 5.68
1659 2062 6.668323 ACAAGTTTAGACATCAAAATGACCG 58.332 36.000 0.00 0.00 36.67 4.79
1660 2063 9.959749 TTTACAAGTTTAGACATCAAAATGACC 57.040 29.630 0.00 0.00 36.67 4.02
1678 2081 9.471084 GGCATTAGTTTTGTGTATTTTACAAGT 57.529 29.630 0.00 0.00 40.93 3.16
1679 2082 8.635124 CGGCATTAGTTTTGTGTATTTTACAAG 58.365 33.333 0.00 0.00 40.93 3.16
1680 2083 8.136165 ACGGCATTAGTTTTGTGTATTTTACAA 58.864 29.630 0.00 0.00 40.93 2.41
1681 2084 7.649973 ACGGCATTAGTTTTGTGTATTTTACA 58.350 30.769 0.00 0.00 36.08 2.41
1682 2085 9.609950 TTACGGCATTAGTTTTGTGTATTTTAC 57.390 29.630 0.00 0.00 0.00 2.01
1683 2086 9.609950 GTTACGGCATTAGTTTTGTGTATTTTA 57.390 29.630 0.00 0.00 0.00 1.52
1684 2087 8.354426 AGTTACGGCATTAGTTTTGTGTATTTT 58.646 29.630 0.00 0.00 0.00 1.82
1685 2088 7.878036 AGTTACGGCATTAGTTTTGTGTATTT 58.122 30.769 0.00 0.00 0.00 1.40
1686 2089 7.443259 AGTTACGGCATTAGTTTTGTGTATT 57.557 32.000 0.00 0.00 0.00 1.89
1687 2090 7.040961 ACAAGTTACGGCATTAGTTTTGTGTAT 60.041 33.333 0.00 0.00 0.00 2.29
1688 2091 6.260493 ACAAGTTACGGCATTAGTTTTGTGTA 59.740 34.615 0.00 0.00 0.00 2.90
1689 2092 5.066764 ACAAGTTACGGCATTAGTTTTGTGT 59.933 36.000 0.00 0.00 0.00 3.72
1690 2093 5.516090 ACAAGTTACGGCATTAGTTTTGTG 58.484 37.500 0.00 0.00 0.00 3.33
1691 2094 5.278120 GGACAAGTTACGGCATTAGTTTTGT 60.278 40.000 0.00 0.00 0.00 2.83
1692 2095 5.151389 GGACAAGTTACGGCATTAGTTTTG 58.849 41.667 0.00 0.00 0.00 2.44
1693 2096 4.083696 CGGACAAGTTACGGCATTAGTTTT 60.084 41.667 0.00 0.00 0.00 2.43
1694 2097 3.434299 CGGACAAGTTACGGCATTAGTTT 59.566 43.478 0.00 0.00 0.00 2.66
1695 2098 2.997986 CGGACAAGTTACGGCATTAGTT 59.002 45.455 0.00 0.00 0.00 2.24
1696 2099 2.231964 TCGGACAAGTTACGGCATTAGT 59.768 45.455 0.00 0.00 0.00 2.24
1697 2100 2.601763 GTCGGACAAGTTACGGCATTAG 59.398 50.000 2.62 0.00 31.66 1.73
1698 2101 2.029200 TGTCGGACAAGTTACGGCATTA 60.029 45.455 8.68 0.00 37.30 1.90
1699 2102 1.270412 TGTCGGACAAGTTACGGCATT 60.270 47.619 8.68 0.00 37.30 3.56
1700 2103 0.319083 TGTCGGACAAGTTACGGCAT 59.681 50.000 8.68 0.00 37.30 4.40
1701 2104 0.104487 TTGTCGGACAAGTTACGGCA 59.896 50.000 19.07 2.28 40.76 5.69
1702 2105 1.219646 TTTGTCGGACAAGTTACGGC 58.780 50.000 21.47 0.00 39.53 5.68
1703 2106 2.867975 AGTTTTGTCGGACAAGTTACGG 59.132 45.455 21.47 0.00 39.53 4.02
1704 2107 3.552699 TCAGTTTTGTCGGACAAGTTACG 59.447 43.478 21.47 15.78 39.53 3.18
1705 2108 5.007332 ACATCAGTTTTGTCGGACAAGTTAC 59.993 40.000 21.47 19.23 39.53 2.50
1706 2109 5.120399 ACATCAGTTTTGTCGGACAAGTTA 58.880 37.500 21.47 6.65 39.53 2.24
1707 2110 3.945285 ACATCAGTTTTGTCGGACAAGTT 59.055 39.130 21.47 10.07 39.53 2.66
1708 2111 3.541632 ACATCAGTTTTGTCGGACAAGT 58.458 40.909 21.47 12.51 39.53 3.16
1709 2112 4.133856 GACATCAGTTTTGTCGGACAAG 57.866 45.455 21.47 11.66 39.53 3.16
1716 2119 6.044512 ACAAGTTACGACATCAGTTTTGTC 57.955 37.500 0.00 0.00 40.06 3.18
1729 2132 1.443194 GCGCTCGGACAAGTTACGA 60.443 57.895 0.00 0.00 35.14 3.43
1747 2150 1.659098 GACGAAGGCACCGTATTTGAG 59.341 52.381 4.26 0.00 40.67 3.02
1810 2213 3.493334 CCATTGACATATGGGCTGATGT 58.507 45.455 7.80 0.21 41.18 3.06
1821 2224 4.532126 ACTCTTCTCACACCCATTGACATA 59.468 41.667 0.00 0.00 0.00 2.29
2048 2453 7.275560 CCAAAAATAAGAAGAAATTACAGCCCG 59.724 37.037 0.00 0.00 0.00 6.13
2049 2454 8.311109 TCCAAAAATAAGAAGAAATTACAGCCC 58.689 33.333 0.00 0.00 0.00 5.19
2067 2475 6.074648 TCACAAAGATACCCAGTCCAAAAAT 58.925 36.000 0.00 0.00 0.00 1.82
2123 2533 6.831976 ACTATTTTATCTCAGGTGGGATCAC 58.168 40.000 0.00 0.00 42.91 3.06
2174 2589 1.880894 CGCCCTCGTACTCAGTTGA 59.119 57.895 0.00 0.00 0.00 3.18
2256 2671 7.066525 CACCCGGTTTCTTAATAAATAGAAGCA 59.933 37.037 0.00 0.00 34.48 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.