>input_sequence_76604
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----------------------------------------GTATAAATCCATGGGCGACCACGCCGTGCTGGATAGGGAC
GCACACACTC--ACTCGTTGTCATCACTCATCAGATCGAGCATCCAATCCAGAAAAACCAGAGGAATCCGCAT-------
-GTGAGCAATGGAGGCGGCGAAGGAGAGGCGGGAGC---------GGAAGGCCGCCGGCGCCGGCGAGGGCGGCGACTCG
GTGCAGCTGCCGACGGAGACGAGCCCGTACGTGCAGTACAAAAAGGACGACGGCCTGGAGGACTACAAGATGCGGGCCTA
CGGCGCGCAGGGCCACCTCCCCGTCTCCGACGTCCCCCACGGCTCCGGCACCGACGCGCCCACCATCCCCGGCACCGCGT
TCCCGACTGAGCACCTGAACCTGCACGGGCGCCAGCAGCCGCAGCGGGGTGCCCAGGGAGGAGGCGCTGGCGTTCGCCGC
ACCGACGACGACGAGGCTGCCACCGACACCATCAACCGCCACGGCGTGCCGTAGTTCATG-------GCTAGGCTGTCTT
GCTAGCTCGAGGAGGTTATCCACGTAGTGCTCAGT---------------------------------------------
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-------GCGCGTGTGGAAAAATGA-------------------------------------------------------
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>chr5B_1_TraesCS5B01G257700
CCGCCACCAACAGTGAAGGGGACTGCATCACCGCTTGGATCGGGACAGAAGAGAAGGGTT-----AACCTACAACTCCTC
TTCAGCATGCAGATCCGCTCACCGCGGAGGACTAAACCAAGCTCTAAATACCAATTTTGAGACCCAAGGTGGTCTCAGAA
AT-ACAATTTGCAGTCAATCACACACGGAGTAGTAAAACTTAGCAATTTGAAGCTTAACTTCAAGAAACTTAGC---CGG
ATTTAGG--ATATC-AAGGGTCAATCAGAAACACTAACAGCTACTCCCTCCGTCCCGG-------AGTAGAATGAGCTCA
AAGACT----------------------------CGAGAATCCAATTTGGCTCTAAGAAGTACTCCCTCCTTCCCAGATT
GTTAGGCGTATTAGTCTTTAGCACGAAAATTAGCGTACGTGGATTTTTATTTGACCCATCGTACAAGTTGTACACATGAA
GGCAATCACGATTCAAAAAAGAAGTGAGAGGCATCCACGATCTTCTTTCCAATTAAATATGGACCATTAGCTTAACTGAT
TTAGAGAGGAAGGCATGTGCGCCTTAGAATATGGGATTGCATGCAGAAACTTAAACGCCCAAGATTTTGGGAAGGAGGGA
GTATATGCTCATGCGCGCCTAAAATGTATTTTGTAAATGTCTAAAATAAAGAAAAAAAATTGTGTTCATTGTC-------
---GCTACCTATAATTTTTTCAGACAACTTA------AGTTTTAACCTAAAAAACAAATTGAAC-GATAAATGTTACCCA
CAAGTGTTACACTTAATTTTAGTTTT--TTCAT-----------------------------------------------
--------------------------------------------------------------------------------
------------------------------CTGACTCAATCGGGA--------------TAGCGTCGTCGCCCTGGCGTG
TTCGCCGTTTTCTCCGGC--AGATCAATGTACCCGGTCTAGTCGACTCGAGCTACGTGTCGCCCAAGCACCGTCGCACGC
CACGCGTAGACGTAGCCGCACCCTCCGCTTGCCACCGCGCGTCCTGCAATGGCT-AGGTGGCCTCGGGACCTGCAGCAGC
TCACGTGATCAGATCGACTCCACCGTCCCATCCCTAGCTCGTATAAATCCATGGGCGACCACGCCGTGCTGGATAGGGAC
GCACACACTC--ACTCGTTGTCATCACTCATCAGATCGAGCATCCAATCCAGAAAAACCAGAGGAATCCGCAT-------
-GTGAGCAATGGAGGCGGCGAAGGAGAGGCGGGAGC---------GGAAGGCCGCCGGCGCCGGCGAGGGCGGCGACTCG
GTGCAGCTGCCGACGGAGACGAGCCCGTACGTGCAGTACAAAAAGGACGACGGCCTGGAGGACTACAAGATGCGGGCCTA
CGGCGCGCAGGGCCACCTCCCCGTCTCCGACGTCCCCCACGGCTCCGGCACCGACGCGCCCACCATCCCCGGCACCGCGT
TCCCGACTGAGCACCTGAACCTGCACGGGCGCCAGCAGCCGCAGCGGGGTGCCCAGGGAGGAGGCGCTGGCGTTCGCCGC
ACCGACGACGACGAGGCTGCCACCGACACCATCAACCGCCACGGCGTGCCGTAGTTCATG-------GCTAGGCTGTCTT
GCTAGCTCGAGGAGGTTATCCACGTAGTGCTCAGT---------------------------------------------
--------------------------------------------------------------------------------
-------GCGCGTGTGGAAAAATGAATAAAG-TTGGTACTCTAAAAGCGCTGGCAAAGCATCTCTTCAACATAATG---T
AATAGTTTTCGTCCAAAAAAATAGAGTCAAATACATCATGGATGCCTCAACTTGTCCGATGCGGTCATTTTGATGTCTAA
ACTTGTAAAATACACAAAACTAATGCCGTAACTTGTCCGACAAAACTGATGTCGTAACTTGTCCGAGCGCTCAAATACGG
TGCCTTCGTCCGTATCCGGGCATATGCACTACCCACATGGCGTGCCAACGTGACATCAGCCCATATGTCAATGGGTGTGA
GAAGAGTGTGCTGGTTGTTTTACAGAAAACTCTTTGTACTTTATATAGTTTTCACAAAAGCTCCTAACATTTTATTTAAA
TACGTCAAACTGCATTGATCCCACTTGTTGGAGAACCTGAACATCAGGTGTTGTCTTGGTGTCGGTTGTG--ACCGCTGC
AAGGCCTGAAACATTGTAGCGGGACTTTCTTTTTTTAGTTTCTTCTTCTTTTCGGGCTGTAATTTCTTC---TTATTTTT
GGA-CTGGGTATCTTTGTGATATTAATATATACTCTTTGTCGG-AAAAAAAAGTGATCCCACCTGAGATAAAATAGTAAT
-----AAAAAAAAGCACCCAGCAGGATTTCAACTGAGTACGAGGGCGCACAGCCTATAAACATGTGCTAATCACTACGCC
TAGAATAGTTGACTGTGTGATATCCTAGTATGCTTCTATTTATTAAGAAACCGGGTGAAATAATAAAGAGAAATAAAAAA
GAAAAGGTTAATTAATGGGAAACTGAAAAAAAATATTAAGAAATTCTCACGTTTGAAAAAAATAACTTATCAACATATTA
CGTGCAATCAATTTTAAAAAGTGTTGGTGCATTTTAAAAAAATCATCATATTTTTGGAAAATTCTCACGTGTATTAAGAA
ATTGTAAATGTGTTTTTCAAAAATGTCTGTCATGCATCCAAAAAATTTACAACATCTATTTCTTAAAATGTTCAATTTGT
A
>chr5A_19
------------------GGAACCGCATGACCGCCTAGATCGGGAGAGAAGAGAAGGATTTTAGGAACCTCCAACTCCTC
TTCGGCATGCAGATCCACTCGCCGCGGAGGACTAAACCAAGCTCTAAATACCAATTGTCAGATCCAAGGCGGTGATCAGA
AGAAAAATTTGCAGTCAATCACTCACAAAGTAGTAAAACTTAGCAGCCTGAAGCTTAATTTCAAGAAACTTAGGAGGCGG
ATTTAAGATATAGC-AAGGGTTACTCAAAAACACTGACATCTAGAGTTTAGCACA-----ATATAAGTAGAACGAGTTCG
AAGACTTCAGATCGTTGGCTAAGCTTTGCCGGAACGAAAATCCAATTTGGCTCTAGCTAAGGAGC---------------
--------------------------------------------------------------------------------
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--ATATGCTCCTGCGCGCCCAAAATGAATTTTGTAAATGTCTAAAAAAATA-----------TGTTCATGGTCACACATC
AATGCTACCTATAAATTTTTA-GGCAAAAACCTAAGCATTTTGATCCTAAAAAAATAAATTAAATGACAAATGTTACCCA
CAAAGGTTACACTTAATTTTTGTTTTATTTCAT-----------------------------------------------
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------------------------------CTGACTCAACCGGTACAGCGTCGTCGCCCTAGCGTCGTCGCCCTGGCGTG
TGCGCCGTTTTCTGCGGCGCAGATCAGTGTACCCGGCCTAGTCGACGCGAGCTACGTGTCGCCCAAGCACCGTCGCACGC
CACGCGTAGATGTAGCCGCACCCTCCGCTTGCCACCGCGTGTCCTGCAATGGCTTAGGTGGCCTCGGGACCTGCAGCAGC
TCACGTGATCAGATCGACTCCACCGTCCCATGCCTAGCTCGTATAAATCCATGGGCGACCACGCCGTGTTGGATAGGGAC
ACACACACTC--ACTCGCTG-------TCATCAGATCGAGCATCCAATCCAGAAAAACCAGAGCAATCCGCACGTGAGGC
CGTGAGCAATGGAGGCGGCGAAGGAGAGGCGGGAGCAGCAGGAGCGGAAGGCCGCCGGCGCCGGCGAGGGGGGCGACTCG
GTGCAGCTGCCGACGGAGACGAGCCCGTACGTGCAGTACAATAAGGACGACGGCCTGGAGGACTACAAGATGCGTGCCTA
CGGCGCGCAGGGCCACCTCCCCGTCTCCGACGTCCCCCACGGCTCCGGCACCGACGCGCCCACCATCCCTGGCACCGCGC
TCCCGACGCAGCACCTGAATCTGCACGGGCGCCAGCAGACGCAGCGGGGTGCCCAGGGAGGAGGCGCTGGCGTTCGCCGC
ACCGACGACGACGAGGCTGCCACCGACGCCATCAACCGCCACGGCGTGCCGTAGTTCATG-------GCTAGGCTGTCTA
GCTAGCTCGTGGAGGTTATCCACGTAGTGCTCAGTGC-------------------------------------------
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--------CGCGTGGGGAAAAATGAATAAAG-TGGTAATG-TAAAATCGCTGGCAAAGCTTGTCTACAGCATAGTG---T
AA------------------------------------------------------------------------------
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>chr5D_62
------------------------------------------------------------------ACCTCCAACTCCTC
TTCAACATGCAGATGCACTCGCCGCGGAGGACTAAACCAAGCTCTAAATACCAATTATGAGACCCAAGGCGATCATCAAA
AGAACAATTTGCACTCAATGACACACAAAGTAGGAAAAGTTAGCAATTTGAAGCTTAATTTCAAGAAACTTAGG---CGG
AATTAAGACACATCTAAGGGCTAACCAGAAACACTCACAGCTAGAGTTTAGCCCCAATATATATAAGTAGAACGAGCTCT
AAGACTTCATTA-----GCTAGCTTTTACCGGAACGGGAATCCAGTTTGGCTCTAAGG----------------------
--------------------------------------------------------------------------------
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----------ATGAACGCCCAAAATGTATTCTGCAGATGTCTAAGAAAATTGAAGAAATATGTGTTAACTGTCACACGAA
ACTGCTACCTACAAATTTTTAAGGTGAAAGCTTAAACATTTTGACCAGTAAAAAAGTTGAATG----------------A
CAAATGTTACACTTAATTTTGGTCTT--TTCATAGACAAAGCATTGCTATCCGGTTTTCACATAAAAACTGTGAAGCACC
TTTATTACACTAACATAAACATCGGAAAAAACAGGATTTTTAATTTTATTTACTAAATTTACCGTCCATCCAAAGCATGT
GATCCAGCCCCATTTCACCTACGATTCTCTCTGACTCAACCCGGA--------------CAGCGTCGTCGCCCTGGCGTG
TGCGCCGTTTTCTCCGGCGCAGATCAATGTACCCGCCCTAGTCGACGCGAGCTACGTGTCGCCTAAGCATCCTCGCACGC
CACGCGTAGACGTAGCCGCACCCTCCGCTTGCCACGGCGCGTCCTGCAATGGCT-AGGTGGCCTCGGGACTTGCAGCAGG
TCACGTGATCAGATCGACTCCACCGTCCCATATCCATCTCGTATAAATCCATGGCCGACCACGCCGTGTTGGATAGGGAC
ACACACACTCTCACTCGTTG-------TCATCAGATCGAGCATCCAATCCAGAAAGACCAGAGCAATCCGCAC-------
-GTGAGCGATGGAGGCGGCGAAGGAGAGGCGGGAGCAGCAGGAGCGGAAGGCCGCCGGCGCAGGCGAGGGAGCCGACTCG
GTGCAGCTGCCGACGGAGACGAGCCCGTACGTGCAGTACAAAAAGGACGACGGCCTGGAGGACTACAAGATGCGGGCCTA
CGGCGCGCAGGGCCACCTCCCCGTCTCCGACGTCCCCCATAGCTCCGGCACCGACGCGCCCACCATCCCCGGCACCGCGC
TCCCGACCGAGCACCTGAATCTGCACGGGCGCCAGCAGCCGCAGCGGGGTGCCCAGGGAGGAGGCGCTGGCGTTCGCCGC
ACCGACGACGACGAGGCTGGCACCGACACCATCAACCGCCACGGCGTGCCGTAGTTCATGGGTCATGGCTAGGCTGTCTT
GCTAGCTCCAGGAGGTTATCCACGTAGTGCTCAGTGCGCGTGGGGGAATGAATAAAGTTGGTAATGTAAAATCGCTGGCA
AAGCATGTCTACAGCATAATGTATAATAGTTTTTGTCCAAAAAAAACATCTTCCAAGAGCTTTGAGGTTATCCACGTAGT
GCTCAGTGCGCGTGGGGGAAAATGAATAAAGTTGGTAATG-TAAAATCGCTGGCAAAGCATGTCTACAGCATAATGTACT
AATAGTTTTTGTCCAAAAAAA-----------------------------------------------------------
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>chr4B_1718
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---------------------------------------ACAAAACTGGTGCCGTAACTTGTCCAAGCGTTTAAATACGA
TGCCTTTGTCCGTATCCAGGCATATGCACTACCCACATGGCGTGCCAACGTGGCATCAGCCCACATGTCAATGGGTGTGA
GAAGAGTGCGTTGGTTGTTTTACAGAAAACTCCTTGTACTTTATATAGTTTTCACAAAAGCTCCTAACATTTTATTTAAA
TACGTCAAACTGCATTGATCCCACTTGTCGGAGAACCTGGACATCAGGTGTTGTCTTGGTGGCGGTTGTGCTACTGCTGC
AAGGCCTGGAACACTGTAGCGGGACTTTCTTTTTTTAGTTTCTTCTTCGTTTTTGGCTGTAATTTCTTC---TTCTTTTT
TTGGCTGGGTATCTTCACGATATTAATATATACTCTTTGTCGG--AAAAAAATTGATCCCACCTGGGATAAAATAGTAAT
AAC-AAAAAAAAAGCACCCAGCAGGATTCCAACTGAGTACGAGGGCGCACAGCCTACACACATGTGCTAATCACTACGCC
TAGAATAGTTGACTGTGTGATATCCTAGTACGCTTCTATATATTAAGAAACCGGGTGAAATAATAAAGAGAAATAAAAAA
GAAAAAGTTAATTCATGGGAAATTGAAAAAAAATATTAAGAAATTCTCATGTTTGAAAAAAATAACTAATCAACATATTA
CGTGCAATCAATTTTAAAAAGTGTTGGTGCATTTTAAAAAAATCATCATATTTTTGGAAAATTCTCACGTGTATTAAGAA
ATTGTAAATGTGTTTTTCAAAAATGTCTGTCATGCATCCAAAAAAATTACAACATCTGTTTCTTAAAATGTTCAATTTGT
A
>chr7B_1721
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------------------------------------------AAACTGATGCCGTAACTTATTCGAGCGTTCAAATATGG
TGCCTTCGTCTGTATCCGGGCATATGCACTACCCACATGGCATGCCAACGTGGCATCAGCCCACATGTCAATGGGTGTGA
GAAGAGTGTGCTGGTTGTTTTACAGAAAACTCCTTGTACTTTATATAGTTTTCACAAAAACTCCTGACATTTTATTTAAA
TACGTCAAACTGCATTGATCCCACTTGTTGGAGAACCTGGACATCAGGTGTTGTCTTGGTGGCGGTTGTGCTACTGCTGC
AAGGCCTGGAACACTGTAGCGGGATTT--TTTTTTTAGTTTCTTCTTCTTTTTTGGCTATAATTTCTTC---TTCTTTTT
TTGGCTGGGTATCTTCACGATATTAATATATGCTCTTTGTTGG--AAAAAAATTGATCCCACGTGAGATAAAATAGTAAT
AAC-AAAAAAAAAGCACCCAGCAGGATTCCAACTGAGTACGAGGGCGCACAGCCTACACACATGTGCTAATCACTACGCC
TAGAATAGTTGACTGTGTGATATCCTAGTACGCTTCTATTTATCAAGAAACCGGGTGAAATAATAAAGATAAATAAAAAA
GAAAAAGTTAATTCATGGGAAA----------------------------------------------------------
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>chr4A_1731
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----------------------------------------------------CGTAACTTGTCCGAACGTTTAAATACGG
TGCCTTAGTCCGTATCCGGGCATATGCAACACCCACATGGCGTGCCAACGTGGCATCAGCCTACATGTCAATGAGTGTGA
GAAGAGTGTGCTGGTTGTTATTAA-AAAAACTCTTGTACTTTATATAGTTTCCACAAAAGCTCCTGACATTTTATTTAAA
TACGTCAAACTGCATTGATCCCATTTGTTGGAGAACCTGGACATCAAGTGTTGTCTTGGTGGCGGTTGTGCTACTGCTGC
AAGGCCTGGAACACTGTAGCGGGACTTTCTTTTTTTAGTTTCTTCTTCTTTTTTGGCTGTAATTTCTTCTTCTTCTTTTT
TTGGCTAGGTATCTTCATGATATTAATATATATTCTTTGTC--AAAAAAAAATTGAGCCCACCTGGGATAAAATAGTAAT
AAC-AA-AGAAAAGCACCCAACAAGATTCCAACTGAGTACGAGGGCGCACAGCCTACACACATGTGCTAATCACTACGCC
TAGAATAGTTGACCGTGTGATATCGTACTACGCTTCTATTTATCAAGAAACCGGCTGAAATAATAAAGAGAAATAAAAAA
----AAGTTAATTCGTGGGAAATTGAAAAAAAATATTAAGAAATTCTCACGTTTGAAAAAAATAACTAATCAATAGATTA
CGTGCAATCAATTTTAAAAAGTGTTGGTGTATTTTAAAAAAATCATCATATTTTTGGAAAATTCTCACGTGTATTAAGAA
ATTGTAAATGTGTTTTCCAAAAATGTCTGTCATGCATCCAAAAAAATTT---CATCTGTTTCATAAAATGTTCAATTTGT
A
>chr2D_1732
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-----------------------------------------------------GTAACTTGTCCGAGCGTTGAAATACGG
TGCCTTCATCCGTATTCGGGCATATAAACCACCCACATGGCGTGCAAACGTGGCATCAGCCCACGTGTCAATGGGTGCGA
GAGGAGTGTGCTGGTTGTTTTACAGAAAACTCCTTGTACTTTATATAATTTTTGCAAAAGCTCATGACATTTTATTTAAA
TATATCAAACTGCATTGATCCCACCTGTCAG---------------------GTCTTGATTTTGCATGTC--AGCATA--
--------------------------------------------------------------------------------
---------------------------------------------------------------TGGGATAAAATAGTAAT
TACAAA-AAAAGAGCACCTGGTAGGATTCAAACTCAGTACGAGGGCGCACAGCCTACACACATGTGCTAATCACTACACC
TAGAATAGTTGACTGTGCAATATCCTAATACACTTCTATTTGTCAAGAAACCGGGCGACATAATAACGAGAAATAAAAAA
GAAAAAGTTGATTCATGGGAAATTG-AAAAAAATATTAAGAAATTCTCATGTTTGAAAAAAAGAACTATTCAACATATTA
CCTGCCATCAACTTAAAAAAGTGTTAGTGCATTTT-AAAAAATCAACATATTTTTGGAAAATTCTCACATGTATTAAGAA
ATTATAAACGTGTTTTTCAAAAATGTCTGTCATGCATTAATTTTTTTTACAACATCTATTTCATAAAATTTC--------
-
>chr7B_1790
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-------------------------------CCCACATGGCGTGCCAACGTGGCATCAGCCCACATGTCAATGGGTGTGA
GAAGAGTGTGCTGGTTGTTTTACAGAAAACTCCTTGTACTTTATATAGTTTTCACAAAAGCTCTTAACATTTTATTTAAA
TACGTCAAACTGCATTGATCCCACTTGTTGGAGAACCTGGACATCGGGTGTTGTCTTGGTGGTGGTTGTGCTACTGCTGC
AAGGCCTGAAACACTGTAGCGGGACTTTCTTTTTTTAGTTTCTTCTTCTTTTTTGGCTGTAAT---TTCTTCTTCTTTTT
TTGGCTAGGTATCTTCAAGATATTAATATATACTCTTTGTTGGAAAAAAAAATTGATCCCACCTGGAATAAAATAGTAAT
AACAAA-AAAAAAGCACCCAGCAGGATTCCAACTGAGTACGAGGGCGCACAGCCTACACACATGTGCTAATCACTACGCC
TAGAATAGTTGACTGTGTGATATCCTAGTACGCTTCTATTTATTAAGAAACCGCGTGAAATAATAAAGAGAAATAAAAAA
GAAAAAGTTAATTCATGGGAAATTGAAAAAAAATATTAAGAAATTCTCACGTTTGAAAAAAATAACTAATCAACATATTA
CGTGCAATCAATTTTTAAAAGTGTTGGTGCATTTTCAAAAAATCATCATATTTTTGGAAAATTCTCACGTGTATTAAGAA
ATTGTAAATGTGTTTTTCAAACATGTCTGTCATGCATCCAAAAAATTTACAACATCTGTTTCTTAAAATGTTCAATTTGT
A
>SNPs
SSSSSSSSSSSSSSSSSS--S--S----S-----S-S--------S-----------S------------S---------
----------------S---S-----------------------------------S------------S----SSSS--
-S------------------------SS------------------------------S--------------S------
-----S---------------S-------------S-------SSSSS-SSSS--SSS--------------S------S
---------------------------------------------------------S-SSSSS-SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS-----------------S--------------------------S--SSS--S---SS--------------------
--------------S-----S--S---SSSS-------S---S-S---------SS--S-S--S---S------------
---S----------------S-----------------------------------------------------------
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---------------------------------------S----------------------------------------
-S----------------------------------S---------S---------------------------------
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-------------------------------S------------------------------------S-----------
S-------------------SSSSSSS------------------------------------S--------S-------
----------------------------------------------------------------------S---------
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-------------------------------------------------------------------------------S
-------S-----------S------------------------------------------------------------
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--------------S------------------S-SS-SSS-----S--------------S---S--S-----------
---------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S-----------------S----------
----------------------------------------------------S----------S----------------
--------------------------------S-----------------------------------------------
---------------------------------------S----------------------------------------
-------------S--------------------------------------SS--------------------S-----
SSS------------SS-----------------------------------S---------------------------
----------------------------S---------------------------S-S---------------------
------------------------------S-------------------------------------------------
-----S-------S--------S--------------------------------------------S------------
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>forward_1077
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-----------------GGCAGATCAATGTACCCGGT-------------------------------------------
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>reverse_2104
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-----------------------TGCCGTAACTTGTCCGACAA-------------------------------------
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