Multiple sequence alignment - TraesCS5B01G243700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G243700 chr5B 100.000 4392 0 0 899 5290 424332459 424336850 0.000000e+00 8111.0
1 TraesCS5B01G243700 chr5B 100.000 408 0 0 1 408 424331561 424331968 0.000000e+00 754.0
2 TraesCS5B01G243700 chr5B 81.900 442 57 9 1261 1687 100019951 100020384 8.430000e-93 351.0
3 TraesCS5B01G243700 chr5B 93.478 46 3 0 4821 4866 494928493 494928448 9.510000e-08 69.4
4 TraesCS5B01G243700 chr5D 94.952 3784 114 33 1010 4729 358995131 358998901 0.000000e+00 5858.0
5 TraesCS5B01G243700 chr5D 90.909 385 6 10 1 370 358994369 358994739 1.710000e-134 490.0
6 TraesCS5B01G243700 chr5A 92.618 3942 149 56 994 4826 460520083 460516175 0.000000e+00 5537.0
7 TraesCS5B01G243700 chr5A 88.050 318 22 9 50 355 460520728 460520415 3.890000e-96 363.0
8 TraesCS5B01G243700 chr2D 81.605 511 73 12 1261 1760 473053796 473053296 2.290000e-108 403.0
9 TraesCS5B01G243700 chr7A 84.444 315 45 4 1458 1768 548045233 548044919 1.850000e-79 307.0
10 TraesCS5B01G243700 chr7A 93.548 93 6 0 1398 1490 611768724 611768816 7.140000e-29 139.0
11 TraesCS5B01G243700 chr1D 84.746 295 44 1 1467 1760 454449755 454450049 1.440000e-75 294.0
12 TraesCS5B01G243700 chr7D 92.708 96 7 0 1398 1493 580166555 580166460 7.140000e-29 139.0
13 TraesCS5B01G243700 chr7D 92.473 93 7 0 1398 1490 511057898 511057990 3.320000e-27 134.0
14 TraesCS5B01G243700 chr7D 77.273 110 14 5 4817 4916 127734359 127734467 3.000000e-03 54.7
15 TraesCS5B01G243700 chr1B 93.548 93 6 0 1398 1490 93951291 93951383 7.140000e-29 139.0
16 TraesCS5B01G243700 chr2A 92.473 93 7 0 1398 1490 115431366 115431458 3.320000e-27 134.0
17 TraesCS5B01G243700 chr2B 93.478 46 3 0 4821 4866 3940720 3940675 9.510000e-08 69.4
18 TraesCS5B01G243700 chr3B 97.222 36 1 0 4831 4866 148364140 148364105 1.590000e-05 62.1
19 TraesCS5B01G243700 chr3D 100.000 29 0 0 4794 4822 535871088 535871060 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G243700 chr5B 424331561 424336850 5289 False 4432.5 8111 100.0000 1 5290 2 chr5B.!!$F2 5289
1 TraesCS5B01G243700 chr5D 358994369 358998901 4532 False 3174.0 5858 92.9305 1 4729 2 chr5D.!!$F1 4728
2 TraesCS5B01G243700 chr5A 460516175 460520728 4553 True 2950.0 5537 90.3340 50 4826 2 chr5A.!!$R1 4776
3 TraesCS5B01G243700 chr2D 473053296 473053796 500 True 403.0 403 81.6050 1261 1760 1 chr2D.!!$R1 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
385 413 0.106419 ACCGTCCTCATCTCCTCCTC 60.106 60.0 0.00 0.00 0.00 3.71 F
2232 2294 0.037790 GTCTCAAAGTCAGAGCGCCT 60.038 55.0 2.29 0.00 33.15 5.52 F
4169 4306 0.179161 GCATAGTCGACGCACTGACT 60.179 55.0 10.46 6.89 46.60 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2243 2305 1.610522 GCAGGTGAATGCACAAAGAGT 59.389 47.619 6.08 0.0 46.96 3.24 R
4226 4363 0.106569 CCTGCTGTATGGGAATGCCA 60.107 55.000 0.00 0.0 35.15 4.92 R
5210 5380 0.036448 TCGGTCGTCCTCTCTTCACT 59.964 55.000 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 72 3.204827 ACAATCGCCATCAGCCGC 61.205 61.111 0.00 0.00 38.78 6.53
244 272 1.685820 CCCGCCTTTCCCTTCTCTT 59.314 57.895 0.00 0.00 0.00 2.85
245 273 0.393132 CCCGCCTTTCCCTTCTCTTC 60.393 60.000 0.00 0.00 0.00 2.87
381 409 0.972983 CACCACCGTCCTCATCTCCT 60.973 60.000 0.00 0.00 0.00 3.69
382 410 0.684805 ACCACCGTCCTCATCTCCTC 60.685 60.000 0.00 0.00 0.00 3.71
383 411 1.395826 CCACCGTCCTCATCTCCTCC 61.396 65.000 0.00 0.00 0.00 4.30
384 412 0.396417 CACCGTCCTCATCTCCTCCT 60.396 60.000 0.00 0.00 0.00 3.69
385 413 0.106419 ACCGTCCTCATCTCCTCCTC 60.106 60.000 0.00 0.00 0.00 3.71
386 414 1.169661 CCGTCCTCATCTCCTCCTCG 61.170 65.000 0.00 0.00 0.00 4.63
387 415 0.179043 CGTCCTCATCTCCTCCTCGA 60.179 60.000 0.00 0.00 0.00 4.04
388 416 1.604604 GTCCTCATCTCCTCCTCGAG 58.395 60.000 5.13 5.13 0.00 4.04
389 417 0.179004 TCCTCATCTCCTCCTCGAGC 60.179 60.000 6.99 0.00 0.00 5.03
390 418 1.178534 CCTCATCTCCTCCTCGAGCC 61.179 65.000 6.99 0.00 0.00 4.70
391 419 1.152652 TCATCTCCTCCTCGAGCCC 60.153 63.158 6.99 0.00 0.00 5.19
392 420 2.200092 ATCTCCTCCTCGAGCCCC 59.800 66.667 6.99 0.00 0.00 5.80
393 421 2.399607 ATCTCCTCCTCGAGCCCCT 61.400 63.158 6.99 0.00 0.00 4.79
394 422 2.366153 ATCTCCTCCTCGAGCCCCTC 62.366 65.000 6.99 0.00 0.00 4.30
395 423 4.144727 TCCTCCTCGAGCCCCTCC 62.145 72.222 6.99 0.00 0.00 4.30
915 943 4.292178 CCTCCTCCGCATCTCGCC 62.292 72.222 0.00 0.00 37.30 5.54
916 944 3.531207 CTCCTCCGCATCTCGCCA 61.531 66.667 0.00 0.00 37.30 5.69
917 945 3.781770 CTCCTCCGCATCTCGCCAC 62.782 68.421 0.00 0.00 37.30 5.01
918 946 4.899239 CCTCCGCATCTCGCCACC 62.899 72.222 0.00 0.00 37.30 4.61
919 947 4.147449 CTCCGCATCTCGCCACCA 62.147 66.667 0.00 0.00 37.30 4.17
920 948 3.664025 CTCCGCATCTCGCCACCAA 62.664 63.158 0.00 0.00 37.30 3.67
921 949 3.499737 CCGCATCTCGCCACCAAC 61.500 66.667 0.00 0.00 37.30 3.77
922 950 3.499737 CGCATCTCGCCACCAACC 61.500 66.667 0.00 0.00 37.30 3.77
923 951 2.045926 GCATCTCGCCACCAACCT 60.046 61.111 0.00 0.00 32.94 3.50
924 952 2.109126 GCATCTCGCCACCAACCTC 61.109 63.158 0.00 0.00 32.94 3.85
925 953 1.450312 CATCTCGCCACCAACCTCC 60.450 63.158 0.00 0.00 0.00 4.30
926 954 2.670148 ATCTCGCCACCAACCTCCC 61.670 63.158 0.00 0.00 0.00 4.30
927 955 3.636231 CTCGCCACCAACCTCCCA 61.636 66.667 0.00 0.00 0.00 4.37
928 956 3.901797 CTCGCCACCAACCTCCCAC 62.902 68.421 0.00 0.00 0.00 4.61
930 958 4.678743 GCCACCAACCTCCCACCC 62.679 72.222 0.00 0.00 0.00 4.61
931 959 4.344865 CCACCAACCTCCCACCCG 62.345 72.222 0.00 0.00 0.00 5.28
932 960 3.246112 CACCAACCTCCCACCCGA 61.246 66.667 0.00 0.00 0.00 5.14
933 961 2.204090 ACCAACCTCCCACCCGAT 60.204 61.111 0.00 0.00 0.00 4.18
934 962 2.298661 ACCAACCTCCCACCCGATC 61.299 63.158 0.00 0.00 0.00 3.69
935 963 2.590092 CAACCTCCCACCCGATCC 59.410 66.667 0.00 0.00 0.00 3.36
936 964 2.691252 AACCTCCCACCCGATCCC 60.691 66.667 0.00 0.00 0.00 3.85
937 965 4.817909 ACCTCCCACCCGATCCCC 62.818 72.222 0.00 0.00 0.00 4.81
938 966 4.815973 CCTCCCACCCGATCCCCA 62.816 72.222 0.00 0.00 0.00 4.96
939 967 2.690881 CTCCCACCCGATCCCCAA 60.691 66.667 0.00 0.00 0.00 4.12
940 968 3.012722 TCCCACCCGATCCCCAAC 61.013 66.667 0.00 0.00 0.00 3.77
941 969 4.123545 CCCACCCGATCCCCAACC 62.124 72.222 0.00 0.00 0.00 3.77
942 970 4.123545 CCACCCGATCCCCAACCC 62.124 72.222 0.00 0.00 0.00 4.11
943 971 4.123545 CACCCGATCCCCAACCCC 62.124 72.222 0.00 0.00 0.00 4.95
944 972 4.686437 ACCCGATCCCCAACCCCA 62.686 66.667 0.00 0.00 0.00 4.96
945 973 3.103213 CCCGATCCCCAACCCCAT 61.103 66.667 0.00 0.00 0.00 4.00
946 974 2.195683 CCGATCCCCAACCCCATG 59.804 66.667 0.00 0.00 0.00 3.66
947 975 2.382770 CCGATCCCCAACCCCATGA 61.383 63.158 0.00 0.00 0.00 3.07
948 976 1.719063 CCGATCCCCAACCCCATGAT 61.719 60.000 0.00 0.00 0.00 2.45
949 977 0.250901 CGATCCCCAACCCCATGATC 60.251 60.000 0.00 0.00 0.00 2.92
950 978 0.113190 GATCCCCAACCCCATGATCC 59.887 60.000 0.00 0.00 0.00 3.36
951 979 1.719063 ATCCCCAACCCCATGATCCG 61.719 60.000 0.00 0.00 0.00 4.18
952 980 2.519302 CCCAACCCCATGATCCGC 60.519 66.667 0.00 0.00 0.00 5.54
953 981 2.275089 CCAACCCCATGATCCGCA 59.725 61.111 0.00 0.00 0.00 5.69
954 982 1.825191 CCAACCCCATGATCCGCAG 60.825 63.158 0.00 0.00 0.00 5.18
982 1010 2.818274 CACGCCGCCTAGGGTTTC 60.818 66.667 11.72 0.00 41.48 2.78
983 1011 4.091939 ACGCCGCCTAGGGTTTCC 62.092 66.667 11.72 0.00 41.48 3.13
984 1012 4.090588 CGCCGCCTAGGGTTTCCA 62.091 66.667 11.72 0.00 41.48 3.53
985 1013 2.437895 GCCGCCTAGGGTTTCCAC 60.438 66.667 11.72 0.00 41.48 4.02
986 1014 2.967946 GCCGCCTAGGGTTTCCACT 61.968 63.158 11.72 0.00 41.48 4.00
987 1015 1.221021 CCGCCTAGGGTTTCCACTC 59.779 63.158 11.72 0.00 35.97 3.51
988 1016 1.221021 CGCCTAGGGTTTCCACTCC 59.779 63.158 11.72 0.00 34.83 3.85
989 1017 1.608154 GCCTAGGGTTTCCACTCCC 59.392 63.158 11.72 0.00 43.71 4.30
990 1018 1.923006 GCCTAGGGTTTCCACTCCCC 61.923 65.000 11.72 0.00 44.40 4.81
992 1020 1.670059 CTAGGGTTTCCACTCCCCTT 58.330 55.000 1.12 0.00 46.92 3.95
1297 1325 2.125912 GCAAGAAGCGCCTCGAGA 60.126 61.111 15.71 0.00 0.00 4.04
1755 1792 7.360575 AGTTACTAACGGTAAATTCTTGCTG 57.639 36.000 0.00 0.00 41.41 4.41
1841 1881 8.725148 TGTTTACACAAGTTGCAATTTTGATTT 58.275 25.926 24.64 14.30 0.00 2.17
1906 1960 2.635915 TCGACTGGACCATACAAGGTTT 59.364 45.455 0.00 0.00 43.38 3.27
1977 2034 5.050769 GGTTGTACATAGTTGATCTGCGATG 60.051 44.000 0.00 1.89 0.00 3.84
2121 2183 6.715347 AAACAAGTCAGTTGGATAGCTTTT 57.285 33.333 0.00 0.00 40.90 2.27
2199 2261 4.324099 CCTGATATGCTTAGAGAATGGGGG 60.324 50.000 0.00 0.00 0.00 5.40
2224 2286 6.205464 GTGATTTGAATGGAGTCTCAAAGTCA 59.795 38.462 10.64 10.69 42.96 3.41
2232 2294 0.037790 GTCTCAAAGTCAGAGCGCCT 60.038 55.000 2.29 0.00 33.15 5.52
2236 2298 0.654683 CAAAGTCAGAGCGCCTATGC 59.345 55.000 2.29 0.00 0.00 3.14
2243 2305 1.153168 GAGCGCCTATGCCTGGAAA 60.153 57.895 2.29 0.00 34.65 3.13
2283 2345 9.794685 CACCTGCAAGTATCTATATGTATAGTG 57.205 37.037 6.88 0.55 37.51 2.74
2351 2413 8.514594 ACCATTTCATGTTTCATACTTACACAG 58.485 33.333 0.00 0.00 0.00 3.66
2462 2524 3.055819 AGGCGCTCTCATTTCTTAAGTCA 60.056 43.478 7.64 0.00 0.00 3.41
2553 2615 2.662637 CAGTGTTTTGCATGGTATTGCG 59.337 45.455 0.00 0.00 45.77 4.85
2577 2639 5.597813 ATGAAGAAATGTTCTGTGTCGTC 57.402 39.130 0.00 0.00 40.59 4.20
2593 2656 7.709182 TCTGTGTCGTCCCATTAATATGTTAAG 59.291 37.037 1.06 0.00 33.57 1.85
2595 2658 6.764560 GTGTCGTCCCATTAATATGTTAAGGT 59.235 38.462 5.98 0.00 33.57 3.50
2639 2704 1.904287 TGTGGTGCCTTCATTGGTAC 58.096 50.000 0.00 0.00 41.13 3.34
2641 2706 2.640332 TGTGGTGCCTTCATTGGTACTA 59.360 45.455 0.00 0.00 41.50 1.82
2642 2707 3.073209 TGTGGTGCCTTCATTGGTACTAA 59.927 43.478 0.00 0.00 41.50 2.24
2643 2708 4.263727 TGTGGTGCCTTCATTGGTACTAAT 60.264 41.667 0.00 0.00 41.50 1.73
2644 2709 5.045505 TGTGGTGCCTTCATTGGTACTAATA 60.046 40.000 3.92 0.00 41.50 0.98
2716 2781 7.260387 TGGTTTCATTCTACTTATGGTGGTA 57.740 36.000 0.00 0.00 0.00 3.25
2832 2898 3.580895 TCCTGCAAGTACCTGTTGTGATA 59.419 43.478 0.00 0.00 0.00 2.15
2884 2950 4.638421 GCATACCAAACAGGCTGTGTAATA 59.362 41.667 22.83 11.51 39.03 0.98
3118 3184 8.188799 TGTTCCAACTCTAGTTATCAGTTATCG 58.811 37.037 0.00 0.00 36.32 2.92
3228 3302 2.672874 GAGTGATGCATGCGTTGTCTTA 59.327 45.455 14.88 0.00 0.00 2.10
3300 3374 2.106566 GAGGTGGAGCAGAATGAGAGA 58.893 52.381 0.00 0.00 39.69 3.10
3328 3403 1.201954 CGCATGAACATTGAGTGACGG 60.202 52.381 0.00 0.00 0.00 4.79
3345 3420 4.270325 GTGACGGACAGTTTATCTAATGCC 59.730 45.833 0.00 0.00 0.00 4.40
3384 3475 6.480320 CCTAGCAAATGGTGATAAGTCTGTAC 59.520 42.308 0.00 0.00 0.00 2.90
3404 3495 9.772973 TCTGTACGATATTTTACCTTATGCATT 57.227 29.630 3.54 0.00 0.00 3.56
3521 3655 5.364735 CCTGAATAGCCCCAAATCATCTTTT 59.635 40.000 0.00 0.00 0.00 2.27
3878 4013 6.206438 TGGATCGAGATGTCTCTTCTAGAATG 59.794 42.308 5.44 2.60 40.75 2.67
3911 4046 3.744660 AGTTCTTTGTAAGTCCAGGCAG 58.255 45.455 0.00 0.00 0.00 4.85
3937 4072 9.109393 GTTTCTCATCCAGCATAACTTTATGTA 57.891 33.333 10.05 0.00 41.92 2.29
4001 4138 2.158325 AGGTCATCCATGGGTGTTGTTT 60.158 45.455 24.39 4.84 35.89 2.83
4047 4184 5.811100 GCTGTAACTCCTAATGTCACTAACC 59.189 44.000 0.00 0.00 0.00 2.85
4169 4306 0.179161 GCATAGTCGACGCACTGACT 60.179 55.000 10.46 6.89 46.60 3.41
4247 4384 1.410083 GGCATTCCCATACAGCAGGAA 60.410 52.381 0.00 0.00 43.56 3.36
4343 4480 2.093816 GTCTGATGTCAGTGATGGCTCA 60.094 50.000 9.65 0.00 44.12 4.26
4561 4700 4.195225 TGATGGTAAACATAGTGTGCGA 57.805 40.909 0.00 0.00 40.72 5.10
4593 4732 5.181690 TGTTCCATTCTTTGTTTCTTCCG 57.818 39.130 0.00 0.00 0.00 4.30
4634 4776 7.123697 TGAGATCAGATTTTTGCATGGATTTCT 59.876 33.333 0.00 0.00 0.00 2.52
4646 4788 2.632377 TGGATTTCTTGCACTCGGATC 58.368 47.619 0.00 0.00 0.00 3.36
4647 4789 2.027285 TGGATTTCTTGCACTCGGATCA 60.027 45.455 0.00 0.00 0.00 2.92
4713 4859 7.124901 TCCAGAAGCTGTACTCTTAATCTGATT 59.875 37.037 8.14 8.14 0.00 2.57
4716 4862 9.160496 AGAAGCTGTACTCTTAATCTGATTTTG 57.840 33.333 8.38 2.50 0.00 2.44
4717 4863 8.854614 AAGCTGTACTCTTAATCTGATTTTGT 57.145 30.769 8.38 5.58 0.00 2.83
4718 4864 8.261492 AGCTGTACTCTTAATCTGATTTTGTG 57.739 34.615 8.38 5.72 0.00 3.33
4719 4865 8.097038 AGCTGTACTCTTAATCTGATTTTGTGA 58.903 33.333 8.38 2.06 0.00 3.58
4720 4866 8.171840 GCTGTACTCTTAATCTGATTTTGTGAC 58.828 37.037 8.38 1.98 0.00 3.67
4722 4868 9.424319 TGTACTCTTAATCTGATTTTGTGACTC 57.576 33.333 8.38 0.00 0.00 3.36
4744 4892 8.779354 ACTCAGATATAACACCAGAGAAAAAC 57.221 34.615 0.00 0.00 0.00 2.43
4755 4919 5.640147 ACCAGAGAAAAACAATATGGTGGA 58.360 37.500 0.00 0.00 38.13 4.02
4820 4990 8.758829 TCCTCTGTTTCATAATGTAGTGTGTAT 58.241 33.333 0.00 0.00 0.00 2.29
4830 5000 9.181805 CATAATGTAGTGTGTATACTTCCTTCG 57.818 37.037 4.17 0.00 32.19 3.79
4831 5001 6.770746 ATGTAGTGTGTATACTTCCTTCGT 57.229 37.500 4.17 0.00 32.19 3.85
4832 5002 6.579666 TGTAGTGTGTATACTTCCTTCGTT 57.420 37.500 4.17 0.00 32.19 3.85
4833 5003 6.615088 TGTAGTGTGTATACTTCCTTCGTTC 58.385 40.000 4.17 0.00 32.19 3.95
4834 5004 5.069501 AGTGTGTATACTTCCTTCGTTCC 57.930 43.478 4.17 0.00 0.00 3.62
4835 5005 4.771054 AGTGTGTATACTTCCTTCGTTCCT 59.229 41.667 4.17 0.00 0.00 3.36
4836 5006 5.948162 AGTGTGTATACTTCCTTCGTTCCTA 59.052 40.000 4.17 0.00 0.00 2.94
4837 5007 6.435277 AGTGTGTATACTTCCTTCGTTCCTAA 59.565 38.462 4.17 0.00 0.00 2.69
4838 5008 7.039504 AGTGTGTATACTTCCTTCGTTCCTAAA 60.040 37.037 4.17 0.00 0.00 1.85
4839 5009 7.763071 GTGTGTATACTTCCTTCGTTCCTAAAT 59.237 37.037 4.17 0.00 0.00 1.40
4840 5010 8.970020 TGTGTATACTTCCTTCGTTCCTAAATA 58.030 33.333 4.17 0.00 0.00 1.40
4841 5011 9.978044 GTGTATACTTCCTTCGTTCCTAAATAT 57.022 33.333 4.17 0.00 0.00 1.28
4845 5015 7.085052 ACTTCCTTCGTTCCTAAATATTTGC 57.915 36.000 11.05 0.00 0.00 3.68
4846 5016 6.095021 ACTTCCTTCGTTCCTAAATATTTGCC 59.905 38.462 11.05 0.00 0.00 4.52
4847 5017 5.751586 TCCTTCGTTCCTAAATATTTGCCT 58.248 37.500 11.05 0.00 0.00 4.75
4848 5018 6.184789 TCCTTCGTTCCTAAATATTTGCCTT 58.815 36.000 11.05 0.00 0.00 4.35
4849 5019 6.661805 TCCTTCGTTCCTAAATATTTGCCTTT 59.338 34.615 11.05 0.00 0.00 3.11
4850 5020 6.972901 CCTTCGTTCCTAAATATTTGCCTTTC 59.027 38.462 11.05 0.00 0.00 2.62
4851 5021 7.148069 CCTTCGTTCCTAAATATTTGCCTTTCT 60.148 37.037 11.05 0.00 0.00 2.52
4852 5022 7.696992 TCGTTCCTAAATATTTGCCTTTCTT 57.303 32.000 11.05 0.00 0.00 2.52
4853 5023 7.535139 TCGTTCCTAAATATTTGCCTTTCTTG 58.465 34.615 11.05 0.00 0.00 3.02
4854 5024 7.392113 TCGTTCCTAAATATTTGCCTTTCTTGA 59.608 33.333 11.05 0.00 0.00 3.02
4855 5025 7.698130 CGTTCCTAAATATTTGCCTTTCTTGAG 59.302 37.037 11.05 0.00 0.00 3.02
4856 5026 8.739972 GTTCCTAAATATTTGCCTTTCTTGAGA 58.260 33.333 11.05 0.00 0.00 3.27
4857 5027 9.479549 TTCCTAAATATTTGCCTTTCTTGAGAT 57.520 29.630 11.05 0.00 0.00 2.75
4858 5028 9.479549 TCCTAAATATTTGCCTTTCTTGAGATT 57.520 29.630 11.05 0.00 0.00 2.40
4863 5033 8.992835 ATATTTGCCTTTCTTGAGATTTCAAC 57.007 30.769 0.00 0.00 38.37 3.18
4864 5034 5.850557 TTGCCTTTCTTGAGATTTCAACA 57.149 34.783 0.00 0.00 38.37 3.33
4865 5035 5.850557 TGCCTTTCTTGAGATTTCAACAA 57.149 34.783 0.00 0.00 38.37 2.83
4866 5036 5.591099 TGCCTTTCTTGAGATTTCAACAAC 58.409 37.500 0.00 0.00 38.37 3.32
4867 5037 5.126869 TGCCTTTCTTGAGATTTCAACAACA 59.873 36.000 0.00 0.00 38.37 3.33
4868 5038 6.183360 TGCCTTTCTTGAGATTTCAACAACAT 60.183 34.615 0.00 0.00 38.37 2.71
4869 5039 7.014134 TGCCTTTCTTGAGATTTCAACAACATA 59.986 33.333 0.00 0.00 38.37 2.29
4870 5040 8.031277 GCCTTTCTTGAGATTTCAACAACATAT 58.969 33.333 0.00 0.00 38.37 1.78
4871 5041 9.350357 CCTTTCTTGAGATTTCAACAACATATG 57.650 33.333 0.00 0.00 38.37 1.78
4922 5092 7.647907 GTGAATTCACATTTTGCTCAAATCT 57.352 32.000 29.43 0.00 45.75 2.40
4923 5093 7.727017 GTGAATTCACATTTTGCTCAAATCTC 58.273 34.615 29.43 0.00 45.75 2.75
4924 5094 6.869913 TGAATTCACATTTTGCTCAAATCTCC 59.130 34.615 3.38 0.00 32.24 3.71
4925 5095 4.789012 TCACATTTTGCTCAAATCTCCC 57.211 40.909 0.00 0.00 32.24 4.30
4926 5096 3.191162 TCACATTTTGCTCAAATCTCCCG 59.809 43.478 0.00 0.00 32.24 5.14
4927 5097 3.191162 CACATTTTGCTCAAATCTCCCGA 59.809 43.478 0.00 0.00 32.24 5.14
4928 5098 3.441572 ACATTTTGCTCAAATCTCCCGAG 59.558 43.478 0.00 0.00 32.24 4.63
4930 5100 3.711348 GCTCAAATCTCCCGAGCG 58.289 61.111 0.00 0.00 42.42 5.03
4931 5101 1.153549 GCTCAAATCTCCCGAGCGT 60.154 57.895 0.00 0.00 42.42 5.07
4932 5102 1.148759 GCTCAAATCTCCCGAGCGTC 61.149 60.000 0.00 0.00 42.42 5.19
4933 5103 0.528684 CTCAAATCTCCCGAGCGTCC 60.529 60.000 0.00 0.00 0.00 4.79
4934 5104 0.970937 TCAAATCTCCCGAGCGTCCT 60.971 55.000 0.00 0.00 0.00 3.85
4935 5105 0.528684 CAAATCTCCCGAGCGTCCTC 60.529 60.000 0.00 0.00 34.66 3.71
4936 5106 0.684805 AAATCTCCCGAGCGTCCTCT 60.685 55.000 0.00 0.00 35.90 3.69
4937 5107 0.684805 AATCTCCCGAGCGTCCTCTT 60.685 55.000 0.00 0.00 35.90 2.85
4938 5108 1.388065 ATCTCCCGAGCGTCCTCTTG 61.388 60.000 0.00 0.00 35.90 3.02
4939 5109 2.282958 TCCCGAGCGTCCTCTTGT 60.283 61.111 0.00 0.00 35.90 3.16
4940 5110 1.878656 CTCCCGAGCGTCCTCTTGTT 61.879 60.000 0.00 0.00 35.90 2.83
4941 5111 1.446272 CCCGAGCGTCCTCTTGTTC 60.446 63.158 0.00 0.00 35.90 3.18
4942 5112 1.446272 CCGAGCGTCCTCTTGTTCC 60.446 63.158 0.00 0.00 35.90 3.62
4943 5113 1.587054 CGAGCGTCCTCTTGTTCCT 59.413 57.895 0.00 0.00 35.90 3.36
4944 5114 0.038159 CGAGCGTCCTCTTGTTCCTT 60.038 55.000 0.00 0.00 35.90 3.36
4945 5115 1.605712 CGAGCGTCCTCTTGTTCCTTT 60.606 52.381 0.00 0.00 35.90 3.11
4946 5116 2.070028 GAGCGTCCTCTTGTTCCTTTC 58.930 52.381 0.00 0.00 35.16 2.62
4947 5117 1.416401 AGCGTCCTCTTGTTCCTTTCA 59.584 47.619 0.00 0.00 0.00 2.69
4948 5118 1.531578 GCGTCCTCTTGTTCCTTTCAC 59.468 52.381 0.00 0.00 0.00 3.18
4949 5119 1.792949 CGTCCTCTTGTTCCTTTCACG 59.207 52.381 0.00 0.00 0.00 4.35
4950 5120 1.531578 GTCCTCTTGTTCCTTTCACGC 59.468 52.381 0.00 0.00 0.00 5.34
4951 5121 1.140052 TCCTCTTGTTCCTTTCACGCA 59.860 47.619 0.00 0.00 0.00 5.24
4952 5122 2.154462 CCTCTTGTTCCTTTCACGCAT 58.846 47.619 0.00 0.00 0.00 4.73
4953 5123 2.554032 CCTCTTGTTCCTTTCACGCATT 59.446 45.455 0.00 0.00 0.00 3.56
4954 5124 3.004734 CCTCTTGTTCCTTTCACGCATTT 59.995 43.478 0.00 0.00 0.00 2.32
4955 5125 4.499696 CCTCTTGTTCCTTTCACGCATTTT 60.500 41.667 0.00 0.00 0.00 1.82
4956 5126 5.004922 TCTTGTTCCTTTCACGCATTTTT 57.995 34.783 0.00 0.00 0.00 1.94
4957 5127 5.040635 TCTTGTTCCTTTCACGCATTTTTC 58.959 37.500 0.00 0.00 0.00 2.29
4958 5128 4.377839 TGTTCCTTTCACGCATTTTTCA 57.622 36.364 0.00 0.00 0.00 2.69
4959 5129 4.748892 TGTTCCTTTCACGCATTTTTCAA 58.251 34.783 0.00 0.00 0.00 2.69
4960 5130 4.564769 TGTTCCTTTCACGCATTTTTCAAC 59.435 37.500 0.00 0.00 0.00 3.18
4961 5131 3.712187 TCCTTTCACGCATTTTTCAACC 58.288 40.909 0.00 0.00 0.00 3.77
4962 5132 2.799978 CCTTTCACGCATTTTTCAACCC 59.200 45.455 0.00 0.00 0.00 4.11
4963 5133 2.517650 TTCACGCATTTTTCAACCCC 57.482 45.000 0.00 0.00 0.00 4.95
4964 5134 0.312416 TCACGCATTTTTCAACCCCG 59.688 50.000 0.00 0.00 0.00 5.73
4965 5135 0.031449 CACGCATTTTTCAACCCCGT 59.969 50.000 0.00 0.00 0.00 5.28
4966 5136 0.031449 ACGCATTTTTCAACCCCGTG 59.969 50.000 0.00 0.00 0.00 4.94
4967 5137 0.312416 CGCATTTTTCAACCCCGTGA 59.688 50.000 0.00 0.00 0.00 4.35
4968 5138 1.269309 CGCATTTTTCAACCCCGTGAA 60.269 47.619 0.00 0.00 35.72 3.18
4969 5139 2.131972 GCATTTTTCAACCCCGTGAAC 58.868 47.619 0.00 0.00 37.24 3.18
4970 5140 2.389998 CATTTTTCAACCCCGTGAACG 58.610 47.619 0.00 0.00 37.24 3.95
4971 5141 1.461559 TTTTTCAACCCCGTGAACGT 58.538 45.000 1.75 0.00 37.24 3.99
4972 5142 1.461559 TTTTCAACCCCGTGAACGTT 58.538 45.000 0.00 0.00 37.24 3.99
4973 5143 1.461559 TTTCAACCCCGTGAACGTTT 58.538 45.000 0.46 0.00 37.24 3.60
4974 5144 1.461559 TTCAACCCCGTGAACGTTTT 58.538 45.000 0.46 0.00 37.74 2.43
4975 5145 1.461559 TCAACCCCGTGAACGTTTTT 58.538 45.000 0.46 0.00 37.74 1.94
4976 5146 1.401199 TCAACCCCGTGAACGTTTTTC 59.599 47.619 0.46 0.00 37.74 2.29
4977 5147 1.132643 CAACCCCGTGAACGTTTTTCA 59.867 47.619 0.46 0.00 37.74 2.69
4978 5148 1.461559 ACCCCGTGAACGTTTTTCAA 58.538 45.000 0.46 0.00 37.74 2.69
4979 5149 1.817447 ACCCCGTGAACGTTTTTCAAA 59.183 42.857 0.46 0.00 37.74 2.69
4980 5150 2.427812 ACCCCGTGAACGTTTTTCAAAT 59.572 40.909 0.46 0.00 37.74 2.32
4981 5151 3.119065 ACCCCGTGAACGTTTTTCAAATT 60.119 39.130 0.46 0.00 37.74 1.82
4982 5152 3.866327 CCCCGTGAACGTTTTTCAAATTT 59.134 39.130 0.46 0.00 37.74 1.82
4983 5153 5.041940 CCCCGTGAACGTTTTTCAAATTTA 58.958 37.500 0.46 0.00 37.74 1.40
4984 5154 5.692654 CCCCGTGAACGTTTTTCAAATTTAT 59.307 36.000 0.46 0.00 37.74 1.40
4985 5155 6.346199 CCCCGTGAACGTTTTTCAAATTTATG 60.346 38.462 0.46 0.00 37.74 1.90
4986 5156 6.418226 CCCGTGAACGTTTTTCAAATTTATGA 59.582 34.615 0.46 0.00 37.74 2.15
4987 5157 7.043325 CCCGTGAACGTTTTTCAAATTTATGAA 60.043 33.333 0.46 0.00 36.21 2.57
4988 5158 7.785665 CCGTGAACGTTTTTCAAATTTATGAAC 59.214 33.333 0.46 0.00 37.04 3.18
4989 5159 8.528295 CGTGAACGTTTTTCAAATTTATGAACT 58.472 29.630 0.46 0.00 35.45 3.01
5019 5189 8.250538 TGAAAAACCTGAACAATTTTCAAGTC 57.749 30.769 9.37 4.72 44.34 3.01
5020 5190 7.333174 TGAAAAACCTGAACAATTTTCAAGTCC 59.667 33.333 9.37 0.00 44.34 3.85
5021 5191 5.930837 AACCTGAACAATTTTCAAGTCCA 57.069 34.783 5.60 0.00 0.00 4.02
5022 5192 6.484364 AACCTGAACAATTTTCAAGTCCAT 57.516 33.333 5.60 0.00 0.00 3.41
5023 5193 5.846203 ACCTGAACAATTTTCAAGTCCATG 58.154 37.500 5.12 0.00 0.00 3.66
5024 5194 5.598005 ACCTGAACAATTTTCAAGTCCATGA 59.402 36.000 0.00 0.00 0.00 3.07
5025 5195 6.098124 ACCTGAACAATTTTCAAGTCCATGAA 59.902 34.615 0.00 0.00 37.53 2.57
5026 5196 7.156673 CCTGAACAATTTTCAAGTCCATGAAT 58.843 34.615 0.00 0.00 38.98 2.57
5027 5197 7.658575 CCTGAACAATTTTCAAGTCCATGAATT 59.341 33.333 0.00 0.00 38.98 2.17
5028 5198 8.961294 TGAACAATTTTCAAGTCCATGAATTT 57.039 26.923 0.00 0.00 38.98 1.82
5029 5199 9.393512 TGAACAATTTTCAAGTCCATGAATTTT 57.606 25.926 0.00 0.00 38.98 1.82
5050 5220 6.487689 TTTTTGTTCCTTTCACGCATTTTT 57.512 29.167 0.00 0.00 0.00 1.94
5051 5221 5.710613 TTTGTTCCTTTCACGCATTTTTC 57.289 34.783 0.00 0.00 0.00 2.29
5052 5222 4.377839 TGTTCCTTTCACGCATTTTTCA 57.622 36.364 0.00 0.00 0.00 2.69
5053 5223 4.748892 TGTTCCTTTCACGCATTTTTCAA 58.251 34.783 0.00 0.00 0.00 2.69
5054 5224 4.564769 TGTTCCTTTCACGCATTTTTCAAC 59.435 37.500 0.00 0.00 0.00 3.18
5055 5225 4.647424 TCCTTTCACGCATTTTTCAACT 57.353 36.364 0.00 0.00 0.00 3.16
5056 5226 4.606961 TCCTTTCACGCATTTTTCAACTC 58.393 39.130 0.00 0.00 0.00 3.01
5057 5227 4.338118 TCCTTTCACGCATTTTTCAACTCT 59.662 37.500 0.00 0.00 0.00 3.24
5058 5228 4.442073 CCTTTCACGCATTTTTCAACTCTG 59.558 41.667 0.00 0.00 0.00 3.35
5059 5229 4.630894 TTCACGCATTTTTCAACTCTGT 57.369 36.364 0.00 0.00 0.00 3.41
5060 5230 3.951306 TCACGCATTTTTCAACTCTGTG 58.049 40.909 0.00 0.00 0.00 3.66
5061 5231 3.625313 TCACGCATTTTTCAACTCTGTGA 59.375 39.130 0.00 0.00 0.00 3.58
5062 5232 4.095632 TCACGCATTTTTCAACTCTGTGAA 59.904 37.500 0.00 0.00 35.72 3.18
5063 5233 4.204978 CACGCATTTTTCAACTCTGTGAAC 59.795 41.667 0.00 0.00 37.24 3.18
5064 5234 3.418619 CGCATTTTTCAACTCTGTGAACG 59.581 43.478 0.00 0.00 37.24 3.95
5065 5235 4.351192 GCATTTTTCAACTCTGTGAACGT 58.649 39.130 0.00 0.00 37.24 3.99
5066 5236 4.798387 GCATTTTTCAACTCTGTGAACGTT 59.202 37.500 0.00 0.00 37.24 3.99
5067 5237 5.288472 GCATTTTTCAACTCTGTGAACGTTT 59.712 36.000 0.46 0.00 37.24 3.60
5068 5238 6.183360 GCATTTTTCAACTCTGTGAACGTTTT 60.183 34.615 0.46 0.00 37.24 2.43
5069 5239 7.621219 GCATTTTTCAACTCTGTGAACGTTTTT 60.621 33.333 0.46 0.00 37.24 1.94
5070 5240 6.921332 TTTTCAACTCTGTGAACGTTTTTC 57.079 33.333 0.46 0.00 37.24 2.29
5071 5241 5.614923 TTCAACTCTGTGAACGTTTTTCA 57.385 34.783 0.46 1.61 32.56 2.69
5072 5242 5.614923 TCAACTCTGTGAACGTTTTTCAA 57.385 34.783 0.46 0.00 0.00 2.69
5073 5243 6.003234 TCAACTCTGTGAACGTTTTTCAAA 57.997 33.333 0.46 0.00 0.00 2.69
5074 5244 6.616947 TCAACTCTGTGAACGTTTTTCAAAT 58.383 32.000 0.46 0.00 0.00 2.32
5075 5245 7.087639 TCAACTCTGTGAACGTTTTTCAAATT 58.912 30.769 0.46 0.00 0.00 1.82
5076 5246 7.596995 TCAACTCTGTGAACGTTTTTCAAATTT 59.403 29.630 0.46 0.00 0.00 1.82
5077 5247 8.855279 CAACTCTGTGAACGTTTTTCAAATTTA 58.145 29.630 0.46 0.00 0.00 1.40
5078 5248 9.581099 AACTCTGTGAACGTTTTTCAAATTTAT 57.419 25.926 0.46 0.00 0.00 1.40
5079 5249 9.019764 ACTCTGTGAACGTTTTTCAAATTTATG 57.980 29.630 0.46 0.00 0.00 1.90
5080 5250 9.232082 CTCTGTGAACGTTTTTCAAATTTATGA 57.768 29.630 0.46 0.00 0.00 2.15
5081 5251 9.574458 TCTGTGAACGTTTTTCAAATTTATGAA 57.426 25.926 0.46 0.00 37.53 2.57
5082 5252 9.618410 CTGTGAACGTTTTTCAAATTTATGAAC 57.382 29.630 0.46 0.00 38.95 3.18
5083 5253 9.360093 TGTGAACGTTTTTCAAATTTATGAACT 57.640 25.926 0.46 0.00 38.95 3.01
5112 5282 9.936759 TTTGAAGAACCTGAACAATTTTTAAGT 57.063 25.926 0.00 0.00 0.00 2.24
5113 5283 9.581099 TTGAAGAACCTGAACAATTTTTAAGTC 57.419 29.630 0.00 0.00 0.00 3.01
5114 5284 8.194769 TGAAGAACCTGAACAATTTTTAAGTCC 58.805 33.333 0.00 0.00 0.00 3.85
5115 5285 7.654022 AGAACCTGAACAATTTTTAAGTCCA 57.346 32.000 0.00 0.00 0.00 4.02
5116 5286 8.250143 AGAACCTGAACAATTTTTAAGTCCAT 57.750 30.769 0.00 0.00 0.00 3.41
5117 5287 8.143835 AGAACCTGAACAATTTTTAAGTCCATG 58.856 33.333 0.00 0.00 0.00 3.66
5118 5288 7.595819 ACCTGAACAATTTTTAAGTCCATGA 57.404 32.000 0.00 0.00 0.00 3.07
5119 5289 8.017418 ACCTGAACAATTTTTAAGTCCATGAA 57.983 30.769 0.00 0.00 0.00 2.57
5120 5290 8.650490 ACCTGAACAATTTTTAAGTCCATGAAT 58.350 29.630 0.00 0.00 0.00 2.57
5121 5291 9.492973 CCTGAACAATTTTTAAGTCCATGAATT 57.507 29.630 0.00 0.00 0.00 2.17
5207 5377 9.841295 ATTAGTAAAGTCAACTAGTCAACCAAA 57.159 29.630 0.00 0.00 31.37 3.28
5208 5378 7.549615 AGTAAAGTCAACTAGTCAACCAAAC 57.450 36.000 0.00 0.00 0.00 2.93
5209 5379 5.479716 AAAGTCAACTAGTCAACCAAACG 57.520 39.130 0.00 0.00 0.00 3.60
5210 5380 4.395959 AGTCAACTAGTCAACCAAACGA 57.604 40.909 0.00 0.00 0.00 3.85
5211 5381 4.369182 AGTCAACTAGTCAACCAAACGAG 58.631 43.478 0.00 0.00 0.00 4.18
5212 5382 4.117685 GTCAACTAGTCAACCAAACGAGT 58.882 43.478 0.00 0.00 34.59 4.18
5213 5383 4.025979 GTCAACTAGTCAACCAAACGAGTG 60.026 45.833 0.00 0.00 33.61 3.51
5214 5384 4.116961 CAACTAGTCAACCAAACGAGTGA 58.883 43.478 0.00 0.00 33.61 3.41
5215 5385 4.395959 ACTAGTCAACCAAACGAGTGAA 57.604 40.909 0.00 0.00 32.34 3.18
5216 5386 4.369182 ACTAGTCAACCAAACGAGTGAAG 58.631 43.478 0.00 0.00 32.34 3.02
5217 5387 3.536956 AGTCAACCAAACGAGTGAAGA 57.463 42.857 0.00 0.00 0.00 2.87
5218 5388 3.458189 AGTCAACCAAACGAGTGAAGAG 58.542 45.455 0.00 0.00 0.00 2.85
5219 5389 3.132289 AGTCAACCAAACGAGTGAAGAGA 59.868 43.478 0.00 0.00 0.00 3.10
5220 5390 3.491267 GTCAACCAAACGAGTGAAGAGAG 59.509 47.826 0.00 0.00 0.00 3.20
5221 5391 2.802816 CAACCAAACGAGTGAAGAGAGG 59.197 50.000 0.00 0.00 0.00 3.69
5222 5392 2.317040 ACCAAACGAGTGAAGAGAGGA 58.683 47.619 0.00 0.00 0.00 3.71
5223 5393 2.036089 ACCAAACGAGTGAAGAGAGGAC 59.964 50.000 0.00 0.00 0.00 3.85
5224 5394 2.320367 CAAACGAGTGAAGAGAGGACG 58.680 52.381 0.00 0.00 0.00 4.79
5225 5395 1.893544 AACGAGTGAAGAGAGGACGA 58.106 50.000 0.00 0.00 0.00 4.20
5226 5396 1.158434 ACGAGTGAAGAGAGGACGAC 58.842 55.000 0.00 0.00 0.00 4.34
5227 5397 0.448593 CGAGTGAAGAGAGGACGACC 59.551 60.000 0.00 0.00 0.00 4.79
5228 5398 0.448593 GAGTGAAGAGAGGACGACCG 59.551 60.000 0.00 0.00 41.83 4.79
5229 5399 0.036448 AGTGAAGAGAGGACGACCGA 59.964 55.000 0.00 0.00 41.83 4.69
5230 5400 0.448593 GTGAAGAGAGGACGACCGAG 59.551 60.000 0.00 0.00 41.83 4.63
5231 5401 1.306642 TGAAGAGAGGACGACCGAGC 61.307 60.000 0.00 0.00 41.83 5.03
5232 5402 2.312398 GAAGAGAGGACGACCGAGCG 62.312 65.000 0.00 0.00 41.83 5.03
5233 5403 2.799814 AAGAGAGGACGACCGAGCGA 62.800 60.000 0.00 0.00 41.83 4.93
5234 5404 2.815298 GAGAGGACGACCGAGCGAG 61.815 68.421 0.00 0.00 41.83 5.03
5235 5405 4.539881 GAGGACGACCGAGCGAGC 62.540 72.222 0.00 0.00 41.83 5.03
5238 5408 4.415332 GACGACCGAGCGAGCCAA 62.415 66.667 3.95 0.00 34.83 4.52
5239 5409 4.719369 ACGACCGAGCGAGCCAAC 62.719 66.667 3.95 0.00 34.83 3.77
5240 5410 4.717629 CGACCGAGCGAGCCAACA 62.718 66.667 0.00 0.00 0.00 3.33
5241 5411 2.811317 GACCGAGCGAGCCAACAG 60.811 66.667 0.00 0.00 0.00 3.16
5251 5421 3.741476 GCCAACAGCTCGCCTTGG 61.741 66.667 10.24 10.24 38.99 3.61
5252 5422 2.281761 CCAACAGCTCGCCTTGGT 60.282 61.111 7.47 0.00 31.39 3.67
5253 5423 2.620112 CCAACAGCTCGCCTTGGTG 61.620 63.158 7.47 0.00 38.68 4.17
5254 5424 2.281761 AACAGCTCGCCTTGGTGG 60.282 61.111 0.00 0.00 37.25 4.61
5255 5425 3.850098 AACAGCTCGCCTTGGTGGG 62.850 63.158 0.00 0.00 37.25 4.61
5269 5439 4.408821 TGGGCCGACCATGTGAGC 62.409 66.667 0.00 0.00 46.80 4.26
5270 5440 4.101448 GGGCCGACCATGTGAGCT 62.101 66.667 0.00 0.00 39.85 4.09
5271 5441 2.512515 GGCCGACCATGTGAGCTC 60.513 66.667 6.82 6.82 35.26 4.09
5272 5442 2.512515 GCCGACCATGTGAGCTCC 60.513 66.667 12.15 3.09 0.00 4.70
5273 5443 2.187946 CCGACCATGTGAGCTCCC 59.812 66.667 12.15 0.00 0.00 4.30
5274 5444 2.362369 CCGACCATGTGAGCTCCCT 61.362 63.158 12.15 0.00 0.00 4.20
5275 5445 1.142748 CGACCATGTGAGCTCCCTC 59.857 63.158 12.15 2.46 38.62 4.30
5276 5446 1.607801 CGACCATGTGAGCTCCCTCA 61.608 60.000 12.15 8.47 45.54 3.86
5286 5456 4.222124 TGAGCTCCCTCAATACCTTTTC 57.778 45.455 12.15 0.00 44.79 2.29
5287 5457 3.587061 TGAGCTCCCTCAATACCTTTTCA 59.413 43.478 12.15 0.00 44.79 2.69
5288 5458 3.942115 GAGCTCCCTCAATACCTTTTCAC 59.058 47.826 0.87 0.00 38.03 3.18
5289 5459 2.678336 GCTCCCTCAATACCTTTTCACG 59.322 50.000 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 52 2.023741 GCTGATGGCGATTGTGCG 59.976 61.111 0.00 0.00 35.06 5.34
48 53 2.410469 GGCTGATGGCGATTGTGC 59.590 61.111 0.00 0.00 42.94 4.57
67 72 3.952675 CGCCCCGATTTGATGCCG 61.953 66.667 0.00 0.00 0.00 5.69
244 272 4.779733 GGGAGGAGCACGGGAGGA 62.780 72.222 0.00 0.00 0.00 3.71
906 934 2.045926 AGGTTGGTGGCGAGATGC 60.046 61.111 0.00 0.00 45.38 3.91
907 935 1.450312 GGAGGTTGGTGGCGAGATG 60.450 63.158 0.00 0.00 0.00 2.90
908 936 2.670148 GGGAGGTTGGTGGCGAGAT 61.670 63.158 0.00 0.00 0.00 2.75
909 937 3.319198 GGGAGGTTGGTGGCGAGA 61.319 66.667 0.00 0.00 0.00 4.04
910 938 3.636231 TGGGAGGTTGGTGGCGAG 61.636 66.667 0.00 0.00 0.00 5.03
911 939 3.948719 GTGGGAGGTTGGTGGCGA 61.949 66.667 0.00 0.00 0.00 5.54
913 941 4.678743 GGGTGGGAGGTTGGTGGC 62.679 72.222 0.00 0.00 0.00 5.01
914 942 4.344865 CGGGTGGGAGGTTGGTGG 62.345 72.222 0.00 0.00 0.00 4.61
915 943 2.536997 GATCGGGTGGGAGGTTGGTG 62.537 65.000 0.00 0.00 0.00 4.17
916 944 2.204090 ATCGGGTGGGAGGTTGGT 60.204 61.111 0.00 0.00 0.00 3.67
917 945 2.590092 GATCGGGTGGGAGGTTGG 59.410 66.667 0.00 0.00 0.00 3.77
918 946 2.590092 GGATCGGGTGGGAGGTTG 59.410 66.667 0.00 0.00 0.00 3.77
919 947 2.691252 GGGATCGGGTGGGAGGTT 60.691 66.667 0.00 0.00 0.00 3.50
920 948 4.817909 GGGGATCGGGTGGGAGGT 62.818 72.222 0.00 0.00 0.00 3.85
921 949 4.815973 TGGGGATCGGGTGGGAGG 62.816 72.222 0.00 0.00 0.00 4.30
922 950 2.690881 TTGGGGATCGGGTGGGAG 60.691 66.667 0.00 0.00 0.00 4.30
923 951 3.012722 GTTGGGGATCGGGTGGGA 61.013 66.667 0.00 0.00 0.00 4.37
924 952 4.123545 GGTTGGGGATCGGGTGGG 62.124 72.222 0.00 0.00 0.00 4.61
925 953 4.123545 GGGTTGGGGATCGGGTGG 62.124 72.222 0.00 0.00 0.00 4.61
926 954 4.123545 GGGGTTGGGGATCGGGTG 62.124 72.222 0.00 0.00 0.00 4.61
927 955 3.982196 ATGGGGTTGGGGATCGGGT 62.982 63.158 0.00 0.00 0.00 5.28
928 956 3.103213 ATGGGGTTGGGGATCGGG 61.103 66.667 0.00 0.00 0.00 5.14
929 957 1.719063 ATCATGGGGTTGGGGATCGG 61.719 60.000 0.00 0.00 0.00 4.18
930 958 0.250901 GATCATGGGGTTGGGGATCG 60.251 60.000 0.00 0.00 0.00 3.69
931 959 0.113190 GGATCATGGGGTTGGGGATC 59.887 60.000 0.00 0.00 34.93 3.36
932 960 1.719063 CGGATCATGGGGTTGGGGAT 61.719 60.000 0.00 0.00 0.00 3.85
933 961 2.382770 CGGATCATGGGGTTGGGGA 61.383 63.158 0.00 0.00 0.00 4.81
934 962 2.195683 CGGATCATGGGGTTGGGG 59.804 66.667 0.00 0.00 0.00 4.96
935 963 2.519302 GCGGATCATGGGGTTGGG 60.519 66.667 0.00 0.00 0.00 4.12
936 964 1.825191 CTGCGGATCATGGGGTTGG 60.825 63.158 0.00 0.00 0.00 3.77
937 965 1.825191 CCTGCGGATCATGGGGTTG 60.825 63.158 0.00 0.00 0.00 3.77
938 966 1.987807 CTCCTGCGGATCATGGGGTT 61.988 60.000 0.00 0.00 0.00 4.11
939 967 2.366837 TCCTGCGGATCATGGGGT 60.367 61.111 0.00 0.00 0.00 4.95
940 968 2.429058 CTCCTGCGGATCATGGGG 59.571 66.667 0.00 0.00 0.00 4.96
941 969 2.429058 CCTCCTGCGGATCATGGG 59.571 66.667 0.00 0.00 0.00 4.00
942 970 2.281345 GCCTCCTGCGGATCATGG 60.281 66.667 0.00 0.00 0.00 3.66
965 993 2.818274 GAAACCCTAGGCGGCGTG 60.818 66.667 9.37 0.00 0.00 5.34
966 994 4.091939 GGAAACCCTAGGCGGCGT 62.092 66.667 9.37 0.00 0.00 5.68
967 995 4.090588 TGGAAACCCTAGGCGGCG 62.091 66.667 2.05 0.51 0.00 6.46
968 996 2.437895 GTGGAAACCCTAGGCGGC 60.438 66.667 2.05 0.00 0.00 6.53
969 997 1.221021 GAGTGGAAACCCTAGGCGG 59.779 63.158 2.05 0.00 0.00 6.13
970 998 1.221021 GGAGTGGAAACCCTAGGCG 59.779 63.158 2.05 0.00 0.00 5.52
971 999 1.608154 GGGAGTGGAAACCCTAGGC 59.392 63.158 2.05 0.00 42.56 3.93
972 1000 2.308185 GGGGAGTGGAAACCCTAGG 58.692 63.158 0.06 0.06 44.97 3.02
976 1004 1.383019 GGAAGGGGAGTGGAAACCC 59.617 63.158 0.00 0.00 45.06 4.11
977 1005 1.383019 GGGAAGGGGAGTGGAAACC 59.617 63.158 0.00 0.00 0.00 3.27
978 1006 1.383019 GGGGAAGGGGAGTGGAAAC 59.617 63.158 0.00 0.00 0.00 2.78
979 1007 1.855451 GGGGGAAGGGGAGTGGAAA 60.855 63.158 0.00 0.00 0.00 3.13
980 1008 2.204244 GGGGGAAGGGGAGTGGAA 60.204 66.667 0.00 0.00 0.00 3.53
1233 1261 3.121030 CCGACCTTGCGCTTGAGG 61.121 66.667 19.06 19.06 39.02 3.86
1596 1632 3.983988 CCGACATTAGATCCTTGATGACG 59.016 47.826 10.60 10.60 37.40 4.35
1977 2034 4.793216 CAGTTAACATGGCAAATTACTCGC 59.207 41.667 8.61 0.00 0.00 5.03
2121 2183 6.773976 ACCAACTTTCTGACTCAAAAATCA 57.226 33.333 0.00 0.00 0.00 2.57
2199 2261 6.205464 TGACTTTGAGACTCCATTCAAATCAC 59.795 38.462 0.00 0.00 41.10 3.06
2224 2286 1.626356 TTTCCAGGCATAGGCGCTCT 61.626 55.000 7.64 5.38 42.47 4.09
2232 2294 2.819608 GCACAAAGAGTTTCCAGGCATA 59.180 45.455 0.00 0.00 0.00 3.14
2236 2298 3.318839 TGAATGCACAAAGAGTTTCCAGG 59.681 43.478 0.00 0.00 0.00 4.45
2243 2305 1.610522 GCAGGTGAATGCACAAAGAGT 59.389 47.619 6.08 0.00 46.96 3.24
2283 2345 4.946478 AGAGTGCTATATTGGGTCTCAC 57.054 45.455 0.00 0.00 0.00 3.51
2327 2389 9.546909 GACTGTGTAAGTATGAAACATGAAATG 57.453 33.333 0.00 0.00 45.45 2.32
2328 2390 8.443160 CGACTGTGTAAGTATGAAACATGAAAT 58.557 33.333 0.00 0.00 40.07 2.17
2351 2413 7.987268 TTCAGTGAATACAATCAGTATCGAC 57.013 36.000 0.08 0.00 42.56 4.20
2462 2524 1.079127 CCACTTCCGACTCCGCAAT 60.079 57.895 0.00 0.00 0.00 3.56
2521 2583 2.607771 GCAAAACACTGAATCGGCATGT 60.608 45.455 0.00 0.00 0.00 3.21
2553 2615 5.990408 ACGACACAGAACATTTCTTCATTC 58.010 37.500 0.00 0.00 38.11 2.67
2644 2709 9.866655 TCAATTACCTTGGATATCTAGCAAAAT 57.133 29.630 2.05 0.00 35.43 1.82
2716 2781 9.988350 CACGCAAATAAGAAAATTAGTATCAGT 57.012 29.630 0.00 0.00 0.00 3.41
3118 3184 3.549625 GGCTTACTGCATTGCATTAGAGC 60.550 47.826 21.26 21.26 45.15 4.09
3175 3248 6.825610 ACAGAAGAGACTCTGAACTGAATTT 58.174 36.000 26.67 12.08 44.82 1.82
3176 3249 6.041409 TGACAGAAGAGACTCTGAACTGAATT 59.959 38.462 26.67 13.97 44.82 2.17
3219 3293 5.957796 GTGTCAGTGAAGTTTTAAGACAACG 59.042 40.000 0.00 0.00 36.43 4.10
3228 3302 2.024414 GGGCAGTGTCAGTGAAGTTTT 58.976 47.619 12.04 0.00 0.00 2.43
3257 3331 4.081531 CAGCACCATGGGATGTATTTGTTT 60.082 41.667 18.09 0.00 0.00 2.83
3262 3336 2.158564 CCTCAGCACCATGGGATGTATT 60.159 50.000 18.09 0.00 0.00 1.89
3300 3374 4.158394 ACTCAATGTTCATGCGGCTAATTT 59.842 37.500 0.00 0.00 0.00 1.82
3328 3403 4.875544 TTGCGGCATTAGATAAACTGTC 57.124 40.909 2.28 0.00 0.00 3.51
3345 3420 2.279741 TGCTAGGTTTAGAGCATTGCG 58.720 47.619 2.38 0.00 43.64 4.85
3370 3445 9.962783 AGGTAAAATATCGTACAGACTTATCAC 57.037 33.333 0.00 0.00 0.00 3.06
3384 3475 9.950680 AACTTCAATGCATAAGGTAAAATATCG 57.049 29.630 12.68 0.00 0.00 2.92
3404 3495 7.400339 AGGTGATACTGGATTCTTAGAACTTCA 59.600 37.037 0.00 0.00 0.00 3.02
3486 3620 3.421844 GGCTATTCAGGAACCAAAGTGT 58.578 45.455 0.00 0.00 0.00 3.55
3521 3655 5.367352 TCTGACTGTCCAAGTAAAACCCTAA 59.633 40.000 5.17 0.00 40.07 2.69
3878 4013 6.203723 ACTTACAAAGAACTTGATCAGCAGTC 59.796 38.462 0.55 0.00 38.50 3.51
3911 4046 7.989826 ACATAAAGTTATGCTGGATGAGAAAC 58.010 34.615 10.33 0.00 43.30 2.78
3963 4100 8.663167 TGGATGACCTGAAATAGTATCATCAAT 58.337 33.333 12.61 0.00 42.90 2.57
4001 4138 3.055675 CCTTCAGGGTACATTCCGTGTAA 60.056 47.826 0.00 0.24 44.52 2.41
4047 4184 4.220382 TGGAATTTTGGGTGCTACAATCTG 59.780 41.667 0.00 0.00 0.00 2.90
4093 4230 2.937469 ATCTGAAGCTGACGACTCAG 57.063 50.000 4.73 4.73 46.17 3.35
4169 4306 3.339141 TCTAACATGTGTTATTGCCGCA 58.661 40.909 0.00 0.00 39.49 5.69
4226 4363 0.106569 CCTGCTGTATGGGAATGCCA 60.107 55.000 0.00 0.00 35.15 4.92
4247 4384 4.655963 TGCTCTTTAAGTTTGAGGAGCAT 58.344 39.130 16.00 0.00 47.00 3.79
4343 4480 1.374190 CAGAGACAACCAGCAGGCT 59.626 57.895 0.00 0.00 39.06 4.58
4593 4732 6.071984 TCTGATCTCAATACTAGGAGGAACC 58.928 44.000 0.00 0.00 39.35 3.62
4672 4818 4.706962 GCTTCTGGAAAATACATTCAGGGT 59.293 41.667 0.00 0.00 0.00 4.34
4713 4859 7.178451 TCTCTGGTGTTATATCTGAGTCACAAA 59.822 37.037 0.00 0.00 36.95 2.83
4716 4862 6.701145 TCTCTGGTGTTATATCTGAGTCAC 57.299 41.667 0.00 0.00 36.95 3.67
4717 4863 7.718334 TTTCTCTGGTGTTATATCTGAGTCA 57.282 36.000 0.00 0.00 36.95 3.41
4718 4864 8.874816 GTTTTTCTCTGGTGTTATATCTGAGTC 58.125 37.037 0.00 0.00 36.95 3.36
4719 4865 8.375506 TGTTTTTCTCTGGTGTTATATCTGAGT 58.624 33.333 0.00 0.00 36.95 3.41
4720 4866 8.777865 TGTTTTTCTCTGGTGTTATATCTGAG 57.222 34.615 0.00 0.00 36.96 3.35
4729 4877 6.239289 CCACCATATTGTTTTTCTCTGGTGTT 60.239 38.462 15.39 0.00 46.78 3.32
4744 4892 7.466746 TTTTTCTCTTTCCTCCACCATATTG 57.533 36.000 0.00 0.00 0.00 1.90
4792 4962 7.936847 ACACACTACATTATGAAACAGAGGAAA 59.063 33.333 0.00 0.00 0.00 3.13
4794 4964 7.004555 ACACACTACATTATGAAACAGAGGA 57.995 36.000 0.00 0.00 0.00 3.71
4810 4980 6.032717 GGAACGAAGGAAGTATACACACTAC 58.967 44.000 5.50 0.00 0.00 2.73
4820 4990 7.281549 GGCAAATATTTAGGAACGAAGGAAGTA 59.718 37.037 0.00 0.00 0.00 2.24
4822 4992 6.318900 AGGCAAATATTTAGGAACGAAGGAAG 59.681 38.462 0.00 0.00 0.00 3.46
4826 4996 7.762382 AGAAAGGCAAATATTTAGGAACGAAG 58.238 34.615 0.00 0.00 0.00 3.79
4827 4997 7.696992 AGAAAGGCAAATATTTAGGAACGAA 57.303 32.000 0.00 0.00 0.00 3.85
4828 4998 7.392113 TCAAGAAAGGCAAATATTTAGGAACGA 59.608 33.333 0.00 0.00 0.00 3.85
4829 4999 7.535139 TCAAGAAAGGCAAATATTTAGGAACG 58.465 34.615 0.00 0.00 0.00 3.95
4830 5000 8.739972 TCTCAAGAAAGGCAAATATTTAGGAAC 58.260 33.333 0.00 0.00 0.00 3.62
4831 5001 8.877864 TCTCAAGAAAGGCAAATATTTAGGAA 57.122 30.769 0.00 0.00 0.00 3.36
4832 5002 9.479549 AATCTCAAGAAAGGCAAATATTTAGGA 57.520 29.630 0.00 0.00 0.00 2.94
4837 5007 9.428097 GTTGAAATCTCAAGAAAGGCAAATATT 57.572 29.630 0.00 0.00 42.27 1.28
4838 5008 8.587608 TGTTGAAATCTCAAGAAAGGCAAATAT 58.412 29.630 0.00 0.00 42.27 1.28
4839 5009 7.950512 TGTTGAAATCTCAAGAAAGGCAAATA 58.049 30.769 0.00 0.00 42.27 1.40
4840 5010 6.819284 TGTTGAAATCTCAAGAAAGGCAAAT 58.181 32.000 0.00 0.00 42.27 2.32
4841 5011 6.219417 TGTTGAAATCTCAAGAAAGGCAAA 57.781 33.333 0.00 0.00 42.27 3.68
4842 5012 5.850557 TGTTGAAATCTCAAGAAAGGCAA 57.149 34.783 0.00 0.00 42.27 4.52
4843 5013 5.126869 TGTTGTTGAAATCTCAAGAAAGGCA 59.873 36.000 0.00 0.00 43.99 4.75
4844 5014 5.591099 TGTTGTTGAAATCTCAAGAAAGGC 58.409 37.500 0.00 0.00 43.99 4.35
4845 5015 9.350357 CATATGTTGTTGAAATCTCAAGAAAGG 57.650 33.333 0.00 0.00 43.99 3.11
4894 5064 7.170320 ATTTGAGCAAAATGTGAATTCACACTC 59.830 33.333 36.80 33.11 44.26 3.51
4895 5065 6.987992 ATTTGAGCAAAATGTGAATTCACACT 59.012 30.769 36.80 28.79 44.26 3.55
4896 5066 7.170320 AGATTTGAGCAAAATGTGAATTCACAC 59.830 33.333 36.80 25.25 44.26 3.82
4897 5067 7.211573 AGATTTGAGCAAAATGTGAATTCACA 58.788 30.769 36.28 36.28 44.87 3.58
4898 5068 7.148689 GGAGATTTGAGCAAAATGTGAATTCAC 60.149 37.037 28.10 28.10 38.64 3.18
4899 5069 6.869913 GGAGATTTGAGCAAAATGTGAATTCA 59.130 34.615 3.38 3.38 38.64 2.57
4900 5070 6.312180 GGGAGATTTGAGCAAAATGTGAATTC 59.688 38.462 0.00 0.00 38.64 2.17
4901 5071 6.168389 GGGAGATTTGAGCAAAATGTGAATT 58.832 36.000 0.00 0.00 38.64 2.17
4902 5072 5.622914 CGGGAGATTTGAGCAAAATGTGAAT 60.623 40.000 0.00 0.00 38.64 2.57
4903 5073 4.321156 CGGGAGATTTGAGCAAAATGTGAA 60.321 41.667 0.00 0.00 38.64 3.18
4904 5074 3.191162 CGGGAGATTTGAGCAAAATGTGA 59.809 43.478 0.00 0.00 38.64 3.58
4905 5075 3.191162 TCGGGAGATTTGAGCAAAATGTG 59.809 43.478 0.00 0.00 38.64 3.21
4906 5076 3.420893 TCGGGAGATTTGAGCAAAATGT 58.579 40.909 0.00 0.00 38.64 2.71
4907 5077 4.025015 CTCGGGAGATTTGAGCAAAATG 57.975 45.455 0.00 0.00 38.64 2.32
4914 5084 0.528684 GGACGCTCGGGAGATTTGAG 60.529 60.000 0.00 0.00 38.80 3.02
4915 5085 0.970937 AGGACGCTCGGGAGATTTGA 60.971 55.000 0.00 0.00 38.80 2.69
4916 5086 0.528684 GAGGACGCTCGGGAGATTTG 60.529 60.000 0.00 0.00 38.80 2.32
4917 5087 0.684805 AGAGGACGCTCGGGAGATTT 60.685 55.000 0.00 0.00 38.80 2.17
4918 5088 0.684805 AAGAGGACGCTCGGGAGATT 60.685 55.000 0.00 0.00 38.80 2.40
4919 5089 1.076632 AAGAGGACGCTCGGGAGAT 60.077 57.895 0.00 0.00 38.80 2.75
4920 5090 2.046864 CAAGAGGACGCTCGGGAGA 61.047 63.158 0.00 0.00 37.31 3.71
4921 5091 1.878656 AACAAGAGGACGCTCGGGAG 61.879 60.000 0.00 0.00 0.00 4.30
4922 5092 1.874345 GAACAAGAGGACGCTCGGGA 61.874 60.000 0.00 0.00 0.00 5.14
4923 5093 1.446272 GAACAAGAGGACGCTCGGG 60.446 63.158 0.00 0.00 0.00 5.14
4924 5094 1.446272 GGAACAAGAGGACGCTCGG 60.446 63.158 0.00 0.00 0.00 4.63
4925 5095 0.038159 AAGGAACAAGAGGACGCTCG 60.038 55.000 0.00 0.00 0.00 5.03
4926 5096 2.070028 GAAAGGAACAAGAGGACGCTC 58.930 52.381 0.00 0.00 0.00 5.03
4927 5097 1.416401 TGAAAGGAACAAGAGGACGCT 59.584 47.619 0.00 0.00 0.00 5.07
4928 5098 1.531578 GTGAAAGGAACAAGAGGACGC 59.468 52.381 0.00 0.00 0.00 5.19
4929 5099 1.792949 CGTGAAAGGAACAAGAGGACG 59.207 52.381 0.00 0.00 0.00 4.79
4930 5100 1.531578 GCGTGAAAGGAACAAGAGGAC 59.468 52.381 0.00 0.00 0.00 3.85
4931 5101 1.140052 TGCGTGAAAGGAACAAGAGGA 59.860 47.619 0.00 0.00 0.00 3.71
4932 5102 1.593196 TGCGTGAAAGGAACAAGAGG 58.407 50.000 0.00 0.00 0.00 3.69
4933 5103 3.904136 AATGCGTGAAAGGAACAAGAG 57.096 42.857 0.00 0.00 0.00 2.85
4934 5104 4.647424 AAAATGCGTGAAAGGAACAAGA 57.353 36.364 0.00 0.00 0.00 3.02
4935 5105 4.803088 TGAAAAATGCGTGAAAGGAACAAG 59.197 37.500 0.00 0.00 0.00 3.16
4936 5106 4.748892 TGAAAAATGCGTGAAAGGAACAA 58.251 34.783 0.00 0.00 0.00 2.83
4937 5107 4.377839 TGAAAAATGCGTGAAAGGAACA 57.622 36.364 0.00 0.00 0.00 3.18
4938 5108 4.026062 GGTTGAAAAATGCGTGAAAGGAAC 60.026 41.667 0.00 0.00 0.00 3.62
4939 5109 4.116238 GGTTGAAAAATGCGTGAAAGGAA 58.884 39.130 0.00 0.00 0.00 3.36
4940 5110 3.491792 GGGTTGAAAAATGCGTGAAAGGA 60.492 43.478 0.00 0.00 0.00 3.36
4941 5111 2.799978 GGGTTGAAAAATGCGTGAAAGG 59.200 45.455 0.00 0.00 0.00 3.11
4942 5112 2.799978 GGGGTTGAAAAATGCGTGAAAG 59.200 45.455 0.00 0.00 0.00 2.62
4943 5113 2.799917 CGGGGTTGAAAAATGCGTGAAA 60.800 45.455 0.00 0.00 0.00 2.69
4944 5114 1.269309 CGGGGTTGAAAAATGCGTGAA 60.269 47.619 0.00 0.00 0.00 3.18
4945 5115 0.312416 CGGGGTTGAAAAATGCGTGA 59.688 50.000 0.00 0.00 0.00 4.35
4946 5116 0.031449 ACGGGGTTGAAAAATGCGTG 59.969 50.000 0.00 0.00 0.00 5.34
4947 5117 0.031449 CACGGGGTTGAAAAATGCGT 59.969 50.000 0.00 0.00 0.00 5.24
4948 5118 0.312416 TCACGGGGTTGAAAAATGCG 59.688 50.000 0.00 0.00 0.00 4.73
4949 5119 2.131972 GTTCACGGGGTTGAAAAATGC 58.868 47.619 0.00 0.00 37.24 3.56
4950 5120 2.223618 ACGTTCACGGGGTTGAAAAATG 60.224 45.455 4.07 0.00 44.95 2.32
4951 5121 2.025898 ACGTTCACGGGGTTGAAAAAT 58.974 42.857 4.07 0.00 44.95 1.82
4952 5122 1.461559 ACGTTCACGGGGTTGAAAAA 58.538 45.000 4.07 0.00 44.95 1.94
4953 5123 1.461559 AACGTTCACGGGGTTGAAAA 58.538 45.000 4.07 0.00 44.95 2.29
4954 5124 1.461559 AAACGTTCACGGGGTTGAAA 58.538 45.000 0.00 0.00 44.95 2.69
4955 5125 1.461559 AAAACGTTCACGGGGTTGAA 58.538 45.000 0.00 0.00 44.95 2.69
4956 5126 1.401199 GAAAAACGTTCACGGGGTTGA 59.599 47.619 0.00 0.00 44.95 3.18
4957 5127 1.132643 TGAAAAACGTTCACGGGGTTG 59.867 47.619 0.00 0.00 44.95 3.77
4958 5128 1.461559 TGAAAAACGTTCACGGGGTT 58.538 45.000 0.00 0.00 44.95 4.11
4959 5129 1.461559 TTGAAAAACGTTCACGGGGT 58.538 45.000 0.00 0.00 44.95 4.95
4960 5130 2.563471 TTTGAAAAACGTTCACGGGG 57.437 45.000 0.00 0.00 44.95 5.73
4961 5131 6.418226 TCATAAATTTGAAAAACGTTCACGGG 59.582 34.615 0.00 0.00 44.95 5.28
4962 5132 7.383050 TCATAAATTTGAAAAACGTTCACGG 57.617 32.000 0.00 0.00 44.95 4.94
4963 5133 8.528295 AGTTCATAAATTTGAAAAACGTTCACG 58.472 29.630 0.00 0.00 40.11 4.35
4994 5164 7.333174 GGACTTGAAAATTGTTCAGGTTTTTCA 59.667 33.333 5.87 5.77 42.90 2.69
4995 5165 7.333174 TGGACTTGAAAATTGTTCAGGTTTTTC 59.667 33.333 5.87 0.00 38.58 2.29
4996 5166 7.164803 TGGACTTGAAAATTGTTCAGGTTTTT 58.835 30.769 5.87 0.00 38.58 1.94
4997 5167 6.706295 TGGACTTGAAAATTGTTCAGGTTTT 58.294 32.000 5.87 0.00 38.58 2.43
4998 5168 6.293004 TGGACTTGAAAATTGTTCAGGTTT 57.707 33.333 5.87 0.00 38.58 3.27
4999 5169 5.930837 TGGACTTGAAAATTGTTCAGGTT 57.069 34.783 5.87 0.00 38.58 3.50
5000 5170 5.598005 TCATGGACTTGAAAATTGTTCAGGT 59.402 36.000 4.13 4.13 40.70 4.00
5001 5171 6.088016 TCATGGACTTGAAAATTGTTCAGG 57.912 37.500 0.00 0.00 0.00 3.86
5002 5172 8.597662 AATTCATGGACTTGAAAATTGTTCAG 57.402 30.769 4.98 0.00 38.98 3.02
5003 5173 8.961294 AAATTCATGGACTTGAAAATTGTTCA 57.039 26.923 4.98 0.00 38.98 3.18
5027 5197 6.147821 TGAAAAATGCGTGAAAGGAACAAAAA 59.852 30.769 0.00 0.00 0.00 1.94
5028 5198 5.639506 TGAAAAATGCGTGAAAGGAACAAAA 59.360 32.000 0.00 0.00 0.00 2.44
5029 5199 5.171476 TGAAAAATGCGTGAAAGGAACAAA 58.829 33.333 0.00 0.00 0.00 2.83
5030 5200 4.748892 TGAAAAATGCGTGAAAGGAACAA 58.251 34.783 0.00 0.00 0.00 2.83
5031 5201 4.377839 TGAAAAATGCGTGAAAGGAACA 57.622 36.364 0.00 0.00 0.00 3.18
5032 5202 4.803613 AGTTGAAAAATGCGTGAAAGGAAC 59.196 37.500 0.00 0.00 0.00 3.62
5033 5203 5.004922 AGTTGAAAAATGCGTGAAAGGAA 57.995 34.783 0.00 0.00 0.00 3.36
5034 5204 4.338118 AGAGTTGAAAAATGCGTGAAAGGA 59.662 37.500 0.00 0.00 0.00 3.36
5035 5205 4.442073 CAGAGTTGAAAAATGCGTGAAAGG 59.558 41.667 0.00 0.00 0.00 3.11
5036 5206 5.036737 ACAGAGTTGAAAAATGCGTGAAAG 58.963 37.500 0.00 0.00 0.00 2.62
5037 5207 4.797868 CACAGAGTTGAAAAATGCGTGAAA 59.202 37.500 0.00 0.00 0.00 2.69
5038 5208 4.095632 TCACAGAGTTGAAAAATGCGTGAA 59.904 37.500 0.00 0.00 0.00 3.18
5039 5209 3.625313 TCACAGAGTTGAAAAATGCGTGA 59.375 39.130 0.00 0.00 0.00 4.35
5040 5210 3.951306 TCACAGAGTTGAAAAATGCGTG 58.049 40.909 0.00 0.00 0.00 5.34
5041 5211 4.351192 GTTCACAGAGTTGAAAAATGCGT 58.649 39.130 0.00 0.00 37.24 5.24
5042 5212 3.418619 CGTTCACAGAGTTGAAAAATGCG 59.581 43.478 0.00 0.00 37.24 4.73
5043 5213 4.351192 ACGTTCACAGAGTTGAAAAATGC 58.649 39.130 0.00 0.00 37.24 3.56
5044 5214 6.869421 AAACGTTCACAGAGTTGAAAAATG 57.131 33.333 0.00 0.00 37.24 2.32
5045 5215 7.596995 TGAAAAACGTTCACAGAGTTGAAAAAT 59.403 29.630 0.00 0.00 37.24 1.82
5046 5216 6.918569 TGAAAAACGTTCACAGAGTTGAAAAA 59.081 30.769 0.00 0.00 37.24 1.94
5047 5217 6.439599 TGAAAAACGTTCACAGAGTTGAAAA 58.560 32.000 0.00 0.00 37.24 2.29
5048 5218 6.003234 TGAAAAACGTTCACAGAGTTGAAA 57.997 33.333 0.00 0.00 37.24 2.69
5049 5219 5.614923 TGAAAAACGTTCACAGAGTTGAA 57.385 34.783 0.00 0.00 32.94 2.69
5050 5220 5.614923 TTGAAAAACGTTCACAGAGTTGA 57.385 34.783 0.00 0.00 0.00 3.18
5051 5221 6.869421 ATTTGAAAAACGTTCACAGAGTTG 57.131 33.333 0.00 0.00 0.00 3.16
5052 5222 7.883229 AAATTTGAAAAACGTTCACAGAGTT 57.117 28.000 0.00 0.96 0.00 3.01
5053 5223 9.019764 CATAAATTTGAAAAACGTTCACAGAGT 57.980 29.630 0.00 0.00 0.00 3.24
5054 5224 9.232082 TCATAAATTTGAAAAACGTTCACAGAG 57.768 29.630 0.00 0.00 0.00 3.35
5055 5225 9.574458 TTCATAAATTTGAAAAACGTTCACAGA 57.426 25.926 0.00 0.00 32.82 3.41
5056 5226 9.618410 GTTCATAAATTTGAAAAACGTTCACAG 57.382 29.630 0.00 0.00 37.36 3.66
5057 5227 9.360093 AGTTCATAAATTTGAAAAACGTTCACA 57.640 25.926 0.00 0.00 37.36 3.58
5086 5256 9.936759 ACTTAAAAATTGTTCAGGTTCTTCAAA 57.063 25.926 0.00 0.00 0.00 2.69
5087 5257 9.581099 GACTTAAAAATTGTTCAGGTTCTTCAA 57.419 29.630 0.00 0.00 0.00 2.69
5088 5258 8.194769 GGACTTAAAAATTGTTCAGGTTCTTCA 58.805 33.333 0.00 0.00 0.00 3.02
5089 5259 8.194769 TGGACTTAAAAATTGTTCAGGTTCTTC 58.805 33.333 0.00 0.00 0.00 2.87
5090 5260 8.073467 TGGACTTAAAAATTGTTCAGGTTCTT 57.927 30.769 0.00 0.00 0.00 2.52
5091 5261 7.654022 TGGACTTAAAAATTGTTCAGGTTCT 57.346 32.000 0.00 0.00 0.00 3.01
5092 5262 8.141268 TCATGGACTTAAAAATTGTTCAGGTTC 58.859 33.333 0.00 0.00 0.00 3.62
5093 5263 8.017418 TCATGGACTTAAAAATTGTTCAGGTT 57.983 30.769 0.00 0.00 0.00 3.50
5094 5264 7.595819 TCATGGACTTAAAAATTGTTCAGGT 57.404 32.000 0.00 0.00 0.00 4.00
5095 5265 9.492973 AATTCATGGACTTAAAAATTGTTCAGG 57.507 29.630 0.00 0.00 0.00 3.86
5181 5351 9.841295 TTTGGTTGACTAGTTGACTTTACTAAT 57.159 29.630 0.00 0.00 0.00 1.73
5182 5352 9.101655 GTTTGGTTGACTAGTTGACTTTACTAA 57.898 33.333 0.00 0.00 0.00 2.24
5183 5353 7.436080 CGTTTGGTTGACTAGTTGACTTTACTA 59.564 37.037 0.00 0.00 0.00 1.82
5184 5354 6.257193 CGTTTGGTTGACTAGTTGACTTTACT 59.743 38.462 0.00 0.00 0.00 2.24
5185 5355 6.256321 TCGTTTGGTTGACTAGTTGACTTTAC 59.744 38.462 0.00 0.00 0.00 2.01
5186 5356 6.339730 TCGTTTGGTTGACTAGTTGACTTTA 58.660 36.000 0.00 0.00 0.00 1.85
5187 5357 5.180271 TCGTTTGGTTGACTAGTTGACTTT 58.820 37.500 0.00 0.00 0.00 2.66
5188 5358 4.761975 TCGTTTGGTTGACTAGTTGACTT 58.238 39.130 0.00 0.00 0.00 3.01
5189 5359 4.142004 ACTCGTTTGGTTGACTAGTTGACT 60.142 41.667 0.00 0.00 0.00 3.41
5190 5360 4.025979 CACTCGTTTGGTTGACTAGTTGAC 60.026 45.833 0.00 0.00 0.00 3.18
5191 5361 4.116961 CACTCGTTTGGTTGACTAGTTGA 58.883 43.478 0.00 0.00 0.00 3.18
5192 5362 4.116961 TCACTCGTTTGGTTGACTAGTTG 58.883 43.478 0.00 0.00 0.00 3.16
5193 5363 4.395959 TCACTCGTTTGGTTGACTAGTT 57.604 40.909 0.00 0.00 0.00 2.24
5194 5364 4.098960 TCTTCACTCGTTTGGTTGACTAGT 59.901 41.667 0.00 0.00 0.00 2.57
5195 5365 4.617959 TCTTCACTCGTTTGGTTGACTAG 58.382 43.478 0.00 0.00 0.00 2.57
5196 5366 4.340097 TCTCTTCACTCGTTTGGTTGACTA 59.660 41.667 0.00 0.00 0.00 2.59
5197 5367 3.132289 TCTCTTCACTCGTTTGGTTGACT 59.868 43.478 0.00 0.00 0.00 3.41
5198 5368 3.454375 TCTCTTCACTCGTTTGGTTGAC 58.546 45.455 0.00 0.00 0.00 3.18
5199 5369 3.492656 CCTCTCTTCACTCGTTTGGTTGA 60.493 47.826 0.00 0.00 0.00 3.18
5200 5370 2.802816 CCTCTCTTCACTCGTTTGGTTG 59.197 50.000 0.00 0.00 0.00 3.77
5201 5371 2.698797 TCCTCTCTTCACTCGTTTGGTT 59.301 45.455 0.00 0.00 0.00 3.67
5202 5372 2.036089 GTCCTCTCTTCACTCGTTTGGT 59.964 50.000 0.00 0.00 0.00 3.67
5203 5373 2.678324 GTCCTCTCTTCACTCGTTTGG 58.322 52.381 0.00 0.00 0.00 3.28
5204 5374 2.031069 TCGTCCTCTCTTCACTCGTTTG 60.031 50.000 0.00 0.00 0.00 2.93
5205 5375 2.030981 GTCGTCCTCTCTTCACTCGTTT 60.031 50.000 0.00 0.00 0.00 3.60
5206 5376 1.536331 GTCGTCCTCTCTTCACTCGTT 59.464 52.381 0.00 0.00 0.00 3.85
5207 5377 1.158434 GTCGTCCTCTCTTCACTCGT 58.842 55.000 0.00 0.00 0.00 4.18
5208 5378 0.448593 GGTCGTCCTCTCTTCACTCG 59.551 60.000 0.00 0.00 0.00 4.18
5209 5379 0.448593 CGGTCGTCCTCTCTTCACTC 59.551 60.000 0.00 0.00 0.00 3.51
5210 5380 0.036448 TCGGTCGTCCTCTCTTCACT 59.964 55.000 0.00 0.00 0.00 3.41
5211 5381 0.448593 CTCGGTCGTCCTCTCTTCAC 59.551 60.000 0.00 0.00 0.00 3.18
5212 5382 1.306642 GCTCGGTCGTCCTCTCTTCA 61.307 60.000 0.00 0.00 0.00 3.02
5213 5383 1.430228 GCTCGGTCGTCCTCTCTTC 59.570 63.158 0.00 0.00 0.00 2.87
5214 5384 2.400158 CGCTCGGTCGTCCTCTCTT 61.400 63.158 0.00 0.00 0.00 2.85
5215 5385 2.820479 CGCTCGGTCGTCCTCTCT 60.820 66.667 0.00 0.00 0.00 3.10
5216 5386 2.815298 CTCGCTCGGTCGTCCTCTC 61.815 68.421 0.00 0.00 0.00 3.20
5217 5387 2.820479 CTCGCTCGGTCGTCCTCT 60.820 66.667 0.00 0.00 0.00 3.69
5218 5388 4.539881 GCTCGCTCGGTCGTCCTC 62.540 72.222 0.00 0.00 0.00 3.71
5221 5391 4.415332 TTGGCTCGCTCGGTCGTC 62.415 66.667 0.00 0.00 0.00 4.20
5222 5392 4.719369 GTTGGCTCGCTCGGTCGT 62.719 66.667 0.00 0.00 0.00 4.34
5223 5393 4.717629 TGTTGGCTCGCTCGGTCG 62.718 66.667 0.00 0.00 0.00 4.79
5224 5394 2.811317 CTGTTGGCTCGCTCGGTC 60.811 66.667 0.00 0.00 0.00 4.79
5234 5404 3.741476 CCAAGGCGAGCTGTTGGC 61.741 66.667 13.81 0.00 42.19 4.52
5235 5405 2.281761 ACCAAGGCGAGCTGTTGG 60.282 61.111 20.44 20.44 45.39 3.77
5236 5406 2.620112 CCACCAAGGCGAGCTGTTG 61.620 63.158 0.00 0.00 0.00 3.33
5237 5407 2.281761 CCACCAAGGCGAGCTGTT 60.282 61.111 0.00 0.00 0.00 3.16
5238 5408 4.335647 CCCACCAAGGCGAGCTGT 62.336 66.667 0.00 0.00 35.39 4.40
5253 5423 4.101448 AGCTCACATGGTCGGCCC 62.101 66.667 2.12 0.00 0.00 5.80
5254 5424 2.512515 GAGCTCACATGGTCGGCC 60.513 66.667 9.40 0.00 0.00 6.13
5255 5425 2.512515 GGAGCTCACATGGTCGGC 60.513 66.667 17.19 0.00 35.52 5.54
5256 5426 2.187946 GGGAGCTCACATGGTCGG 59.812 66.667 17.19 0.00 35.52 4.79
5257 5427 1.142748 GAGGGAGCTCACATGGTCG 59.857 63.158 20.34 0.00 35.52 4.79
5258 5428 0.615331 TTGAGGGAGCTCACATGGTC 59.385 55.000 20.34 7.42 32.47 4.02
5259 5429 1.293062 ATTGAGGGAGCTCACATGGT 58.707 50.000 20.34 0.00 32.47 3.55
5260 5430 2.486191 GGTATTGAGGGAGCTCACATGG 60.486 54.545 20.34 0.00 32.47 3.66
5261 5431 2.437281 AGGTATTGAGGGAGCTCACATG 59.563 50.000 20.34 0.00 32.47 3.21
5262 5432 2.769209 AGGTATTGAGGGAGCTCACAT 58.231 47.619 20.34 5.56 32.47 3.21
5263 5433 2.254152 AGGTATTGAGGGAGCTCACA 57.746 50.000 20.34 10.91 32.47 3.58
5264 5434 3.636153 AAAGGTATTGAGGGAGCTCAC 57.364 47.619 17.19 13.15 32.47 3.51
5265 5435 3.587061 TGAAAAGGTATTGAGGGAGCTCA 59.413 43.478 17.19 0.00 0.00 4.26
5266 5436 3.942115 GTGAAAAGGTATTGAGGGAGCTC 59.058 47.826 4.71 4.71 0.00 4.09
5267 5437 3.619979 CGTGAAAAGGTATTGAGGGAGCT 60.620 47.826 0.00 0.00 0.00 4.09
5268 5438 2.678336 CGTGAAAAGGTATTGAGGGAGC 59.322 50.000 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.