Multiple sequence alignment - TraesCS5B01G241000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G241000 chr5B 100.000 2975 0 0 1 2975 421167335 421164361 0.000000e+00 5494.0
1 TraesCS5B01G241000 chr5B 97.214 323 9 0 1 323 421175534 421175212 5.610000e-152 547.0
2 TraesCS5B01G241000 chr5B 87.353 340 36 3 1793 2125 405796084 405795745 1.670000e-102 383.0
3 TraesCS5B01G241000 chr5B 77.778 324 64 7 1233 1549 251917775 251918097 3.030000e-45 193.0
4 TraesCS5B01G241000 chr5B 75.301 332 69 10 382 707 196732951 196732627 2.390000e-31 147.0
5 TraesCS5B01G241000 chr5B 89.474 95 8 2 1306 1399 415670114 415670021 5.210000e-23 119.0
6 TraesCS5B01G241000 chr5D 92.679 2090 113 20 899 2974 356194876 356192813 0.000000e+00 2976.0
7 TraesCS5B01G241000 chr5D 85.597 611 44 19 308 914 356195466 356194896 4.240000e-168 601.0
8 TraesCS5B01G241000 chr5D 78.413 315 55 8 2275 2580 536034658 536034968 3.030000e-45 193.0
9 TraesCS5B01G241000 chr5D 74.766 321 65 13 1221 1533 75354251 75353939 2.410000e-26 130.0
10 TraesCS5B01G241000 chr5D 89.474 95 8 2 1306 1399 352698270 352698177 5.210000e-23 119.0
11 TraesCS5B01G241000 chr5A 91.728 1777 100 24 308 2076 457892323 457890586 0.000000e+00 2423.0
12 TraesCS5B01G241000 chr5A 76.615 325 62 13 389 707 265041520 265041204 1.830000e-37 167.0
13 TraesCS5B01G241000 chr5A 75.588 340 63 18 1221 1550 70482814 70482485 1.850000e-32 150.0
14 TraesCS5B01G241000 chr5A 75.080 313 57 19 2264 2568 268711005 268711304 3.110000e-25 126.0
15 TraesCS5B01G241000 chr6B 96.904 323 10 0 1 323 686742270 686742592 2.610000e-150 542.0
16 TraesCS5B01G241000 chr3B 96.904 323 10 0 1 323 604694823 604694501 2.610000e-150 542.0
17 TraesCS5B01G241000 chr3B 95.770 331 13 1 1 331 709360952 709360623 1.570000e-147 532.0
18 TraesCS5B01G241000 chr1B 96.904 323 10 0 1 323 43009535 43009857 2.610000e-150 542.0
19 TraesCS5B01G241000 chr1B 96.605 324 11 0 1 324 321057216 321056893 3.370000e-149 538.0
20 TraesCS5B01G241000 chr1B 76.976 291 58 6 405 691 261267192 261266907 1.100000e-34 158.0
21 TraesCS5B01G241000 chr1B 73.647 425 81 24 2161 2579 662463574 662463973 5.170000e-28 135.0
22 TraesCS5B01G241000 chr4B 96.894 322 10 0 2 323 535392988 535393309 9.380000e-150 540.0
23 TraesCS5B01G241000 chr4B 96.605 324 9 1 1 324 79325201 79324880 1.210000e-148 536.0
24 TraesCS5B01G241000 chr2B 96.605 324 11 0 1 324 646192776 646192453 3.370000e-149 538.0
25 TraesCS5B01G241000 chr2B 78.344 314 57 7 2275 2580 470521181 470520871 3.030000e-45 193.0
26 TraesCS5B01G241000 chr1A 76.402 428 78 18 2158 2580 579109112 579109521 3.000000e-50 209.0
27 TraesCS5B01G241000 chr7D 78.354 328 57 9 2264 2582 404377777 404377455 1.810000e-47 200.0
28 TraesCS5B01G241000 chr7D 77.134 328 61 9 2264 2582 404608698 404608376 8.470000e-41 178.0
29 TraesCS5B01G241000 chr1D 75.917 436 78 21 2161 2582 482501027 482501449 6.500000e-47 198.0
30 TraesCS5B01G241000 chr1D 76.358 313 64 8 399 707 220720116 220720422 3.070000e-35 159.0
31 TraesCS5B01G241000 chr3A 77.358 318 62 9 379 691 304474332 304474644 2.360000e-41 180.0
32 TraesCS5B01G241000 chr4D 77.656 273 53 7 405 672 390207464 390207195 3.070000e-35 159.0
33 TraesCS5B01G241000 chr4D 76.949 295 57 10 418 707 298607106 298607394 1.100000e-34 158.0
34 TraesCS5B01G241000 chr4D 74.613 323 65 15 2264 2579 488135589 488135277 3.110000e-25 126.0
35 TraesCS5B01G241000 chr3D 76.768 297 60 6 399 691 344448446 344448737 1.100000e-34 158.0
36 TraesCS5B01G241000 chr6A 75.851 323 60 16 2264 2579 2034988 2034677 6.640000e-32 148.0
37 TraesCS5B01G241000 chrUn 75.146 342 68 14 2234 2570 254810018 254810347 8.590000e-31 145.0
38 TraesCS5B01G241000 chr7A 75.146 342 68 14 2234 2570 726978484 726978813 8.590000e-31 145.0
39 TraesCS5B01G241000 chr2A 72.986 422 88 20 2160 2579 603782407 603782804 1.120000e-24 124.0
40 TraesCS5B01G241000 chr4A 83.654 104 15 2 1333 1435 84897266 84897164 2.440000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G241000 chr5B 421164361 421167335 2974 True 5494.0 5494 100.000 1 2975 1 chr5B.!!$R4 2974
1 TraesCS5B01G241000 chr5D 356192813 356195466 2653 True 1788.5 2976 89.138 308 2974 2 chr5D.!!$R3 2666
2 TraesCS5B01G241000 chr5A 457890586 457892323 1737 True 2423.0 2423 91.728 308 2076 1 chr5A.!!$R3 1768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
257 258 0.036388 GCTCCCCTTGTGTCGAATCA 60.036 55.0 0.00 0.0 0.0 2.57 F
319 320 0.104882 TCCCCTACACTTGTGGGTCA 60.105 55.0 10.56 0.0 44.2 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1893 1935 0.109086 CGACGAGATGGAAGCAGTGT 60.109 55.0 0.0 0.0 0.0 3.55 R
1993 2035 0.323725 ATGCGGTCTGAAAATGCCCT 60.324 50.0 0.0 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.602257 TCACTGATCCATTGCCTACG 57.398 50.000 0.00 0.00 0.00 3.51
20 21 2.107366 TCACTGATCCATTGCCTACGA 58.893 47.619 0.00 0.00 0.00 3.43
21 22 2.101415 TCACTGATCCATTGCCTACGAG 59.899 50.000 0.00 0.00 0.00 4.18
22 23 2.111384 ACTGATCCATTGCCTACGAGT 58.889 47.619 0.00 0.00 0.00 4.18
23 24 2.501723 ACTGATCCATTGCCTACGAGTT 59.498 45.455 0.00 0.00 0.00 3.01
24 25 3.055094 ACTGATCCATTGCCTACGAGTTT 60.055 43.478 0.00 0.00 0.00 2.66
25 26 3.941483 CTGATCCATTGCCTACGAGTTTT 59.059 43.478 0.00 0.00 0.00 2.43
26 27 4.331968 TGATCCATTGCCTACGAGTTTTT 58.668 39.130 0.00 0.00 0.00 1.94
27 28 4.394920 TGATCCATTGCCTACGAGTTTTTC 59.605 41.667 0.00 0.00 0.00 2.29
28 29 3.745799 TCCATTGCCTACGAGTTTTTCA 58.254 40.909 0.00 0.00 0.00 2.69
29 30 4.331968 TCCATTGCCTACGAGTTTTTCAT 58.668 39.130 0.00 0.00 0.00 2.57
30 31 5.492895 TCCATTGCCTACGAGTTTTTCATA 58.507 37.500 0.00 0.00 0.00 2.15
31 32 6.119536 TCCATTGCCTACGAGTTTTTCATAT 58.880 36.000 0.00 0.00 0.00 1.78
32 33 7.276658 TCCATTGCCTACGAGTTTTTCATATA 58.723 34.615 0.00 0.00 0.00 0.86
33 34 7.936847 TCCATTGCCTACGAGTTTTTCATATAT 59.063 33.333 0.00 0.00 0.00 0.86
34 35 8.567948 CCATTGCCTACGAGTTTTTCATATATT 58.432 33.333 0.00 0.00 0.00 1.28
35 36 9.385902 CATTGCCTACGAGTTTTTCATATATTG 57.614 33.333 0.00 0.00 0.00 1.90
36 37 8.500753 TTGCCTACGAGTTTTTCATATATTGT 57.499 30.769 0.00 0.00 0.00 2.71
37 38 7.915508 TGCCTACGAGTTTTTCATATATTGTG 58.084 34.615 0.00 0.00 0.00 3.33
38 39 6.851330 GCCTACGAGTTTTTCATATATTGTGC 59.149 38.462 0.00 0.00 0.00 4.57
39 40 7.254795 GCCTACGAGTTTTTCATATATTGTGCT 60.255 37.037 0.00 0.00 0.00 4.40
40 41 8.612619 CCTACGAGTTTTTCATATATTGTGCTT 58.387 33.333 0.00 0.00 0.00 3.91
41 42 9.638300 CTACGAGTTTTTCATATATTGTGCTTC 57.362 33.333 0.00 0.00 0.00 3.86
42 43 7.180079 ACGAGTTTTTCATATATTGTGCTTCG 58.820 34.615 0.00 0.00 0.00 3.79
43 44 6.139169 CGAGTTTTTCATATATTGTGCTTCGC 59.861 38.462 0.00 0.00 0.00 4.70
44 45 7.088589 AGTTTTTCATATATTGTGCTTCGCT 57.911 32.000 0.00 0.00 0.00 4.93
45 46 7.538575 AGTTTTTCATATATTGTGCTTCGCTT 58.461 30.769 0.00 0.00 0.00 4.68
46 47 8.673711 AGTTTTTCATATATTGTGCTTCGCTTA 58.326 29.630 0.00 0.00 0.00 3.09
47 48 9.450807 GTTTTTCATATATTGTGCTTCGCTTAT 57.549 29.630 0.00 0.00 0.00 1.73
52 53 9.489084 TCATATATTGTGCTTCGCTTATTTACT 57.511 29.630 0.00 0.00 0.00 2.24
56 57 9.855021 ATATTGTGCTTCGCTTATTTACTTTTT 57.145 25.926 0.00 0.00 0.00 1.94
57 58 7.617533 TTGTGCTTCGCTTATTTACTTTTTC 57.382 32.000 0.00 0.00 0.00 2.29
58 59 5.849081 TGTGCTTCGCTTATTTACTTTTTCG 59.151 36.000 0.00 0.00 0.00 3.46
59 60 5.849604 GTGCTTCGCTTATTTACTTTTTCGT 59.150 36.000 0.00 0.00 0.00 3.85
60 61 6.358822 GTGCTTCGCTTATTTACTTTTTCGTT 59.641 34.615 0.00 0.00 0.00 3.85
61 62 6.358558 TGCTTCGCTTATTTACTTTTTCGTTG 59.641 34.615 0.00 0.00 0.00 4.10
62 63 6.663480 TTCGCTTATTTACTTTTTCGTTGC 57.337 33.333 0.00 0.00 0.00 4.17
63 64 5.992729 TCGCTTATTTACTTTTTCGTTGCT 58.007 33.333 0.00 0.00 0.00 3.91
64 65 7.119605 TCGCTTATTTACTTTTTCGTTGCTA 57.880 32.000 0.00 0.00 0.00 3.49
65 66 7.011189 TCGCTTATTTACTTTTTCGTTGCTAC 58.989 34.615 0.00 0.00 0.00 3.58
66 67 7.013529 CGCTTATTTACTTTTTCGTTGCTACT 58.986 34.615 0.00 0.00 0.00 2.57
67 68 8.164153 CGCTTATTTACTTTTTCGTTGCTACTA 58.836 33.333 0.00 0.00 0.00 1.82
68 69 9.983804 GCTTATTTACTTTTTCGTTGCTACTAT 57.016 29.630 0.00 0.00 0.00 2.12
76 77 8.995220 ACTTTTTCGTTGCTACTATTACAATCA 58.005 29.630 0.00 0.00 0.00 2.57
77 78 9.262472 CTTTTTCGTTGCTACTATTACAATCAC 57.738 33.333 0.00 0.00 0.00 3.06
78 79 8.542497 TTTTCGTTGCTACTATTACAATCACT 57.458 30.769 0.00 0.00 0.00 3.41
79 80 9.642327 TTTTCGTTGCTACTATTACAATCACTA 57.358 29.630 0.00 0.00 0.00 2.74
80 81 8.624701 TTCGTTGCTACTATTACAATCACTAC 57.375 34.615 0.00 0.00 0.00 2.73
81 82 7.764331 TCGTTGCTACTATTACAATCACTACA 58.236 34.615 0.00 0.00 0.00 2.74
82 83 8.245491 TCGTTGCTACTATTACAATCACTACAA 58.755 33.333 0.00 0.00 0.00 2.41
83 84 8.865978 CGTTGCTACTATTACAATCACTACAAA 58.134 33.333 0.00 0.00 0.00 2.83
86 87 9.713713 TGCTACTATTACAATCACTACAAAACA 57.286 29.630 0.00 0.00 0.00 2.83
87 88 9.968743 GCTACTATTACAATCACTACAAAACAC 57.031 33.333 0.00 0.00 0.00 3.32
89 90 8.911918 ACTATTACAATCACTACAAAACACCA 57.088 30.769 0.00 0.00 0.00 4.17
90 91 9.344772 ACTATTACAATCACTACAAAACACCAA 57.655 29.630 0.00 0.00 0.00 3.67
93 94 9.877178 ATTACAATCACTACAAAACACCAAAAA 57.123 25.926 0.00 0.00 0.00 1.94
94 95 9.877178 TTACAATCACTACAAAACACCAAAAAT 57.123 25.926 0.00 0.00 0.00 1.82
99 100 8.359060 TCACTACAAAACACCAAAAATATTGC 57.641 30.769 0.00 0.00 0.00 3.56
100 101 8.200792 TCACTACAAAACACCAAAAATATTGCT 58.799 29.630 0.00 0.00 0.00 3.91
101 102 9.469807 CACTACAAAACACCAAAAATATTGCTA 57.530 29.630 0.00 0.00 0.00 3.49
132 133 8.943594 ATCTTTACCTTTTACCATTGTTACCA 57.056 30.769 0.00 0.00 0.00 3.25
133 134 8.943594 TCTTTACCTTTTACCATTGTTACCAT 57.056 30.769 0.00 0.00 0.00 3.55
134 135 9.369672 TCTTTACCTTTTACCATTGTTACCATT 57.630 29.630 0.00 0.00 0.00 3.16
137 138 9.810870 TTACCTTTTACCATTGTTACCATTACT 57.189 29.630 0.00 0.00 0.00 2.24
139 140 9.984590 ACCTTTTACCATTGTTACCATTACTAT 57.015 29.630 0.00 0.00 0.00 2.12
169 170 8.936864 ACTACTTTGCTACTAAATACTTTGCTG 58.063 33.333 0.00 0.00 0.00 4.41
170 171 6.612306 ACTTTGCTACTAAATACTTTGCTGC 58.388 36.000 0.00 0.00 0.00 5.25
171 172 6.206634 ACTTTGCTACTAAATACTTTGCTGCA 59.793 34.615 0.00 0.00 0.00 4.41
172 173 5.801350 TGCTACTAAATACTTTGCTGCAG 57.199 39.130 10.11 10.11 0.00 4.41
173 174 5.487433 TGCTACTAAATACTTTGCTGCAGA 58.513 37.500 20.43 0.00 0.00 4.26
174 175 6.115446 TGCTACTAAATACTTTGCTGCAGAT 58.885 36.000 20.43 0.00 0.00 2.90
175 176 7.272244 TGCTACTAAATACTTTGCTGCAGATA 58.728 34.615 20.43 1.74 0.00 1.98
176 177 7.933577 TGCTACTAAATACTTTGCTGCAGATAT 59.066 33.333 20.43 3.59 0.00 1.63
177 178 8.778358 GCTACTAAATACTTTGCTGCAGATATT 58.222 33.333 20.43 9.46 0.00 1.28
186 187 8.159344 ACTTTGCTGCAGATATTAAGTTATCC 57.841 34.615 20.43 0.00 30.29 2.59
187 188 7.775093 ACTTTGCTGCAGATATTAAGTTATCCA 59.225 33.333 20.43 0.00 30.29 3.41
188 189 7.734924 TTGCTGCAGATATTAAGTTATCCAG 57.265 36.000 20.43 0.00 30.29 3.86
189 190 6.233434 TGCTGCAGATATTAAGTTATCCAGG 58.767 40.000 20.43 0.00 30.29 4.45
190 191 6.183361 TGCTGCAGATATTAAGTTATCCAGGT 60.183 38.462 20.43 0.00 30.29 4.00
191 192 6.148480 GCTGCAGATATTAAGTTATCCAGGTG 59.852 42.308 20.43 0.00 30.29 4.00
192 193 7.136822 TGCAGATATTAAGTTATCCAGGTGT 57.863 36.000 0.00 0.00 30.29 4.16
193 194 6.992123 TGCAGATATTAAGTTATCCAGGTGTG 59.008 38.462 0.00 0.00 30.29 3.82
194 195 6.428159 GCAGATATTAAGTTATCCAGGTGTGG 59.572 42.308 0.00 0.00 46.63 4.17
195 196 7.509546 CAGATATTAAGTTATCCAGGTGTGGT 58.490 38.462 0.00 0.00 45.28 4.16
196 197 7.993183 CAGATATTAAGTTATCCAGGTGTGGTT 59.007 37.037 0.00 0.00 45.28 3.67
197 198 7.993183 AGATATTAAGTTATCCAGGTGTGGTTG 59.007 37.037 0.00 0.00 45.28 3.77
198 199 5.570205 TTAAGTTATCCAGGTGTGGTTGA 57.430 39.130 0.00 0.00 45.28 3.18
199 200 4.447138 AAGTTATCCAGGTGTGGTTGAA 57.553 40.909 0.00 0.00 45.28 2.69
200 201 4.657814 AGTTATCCAGGTGTGGTTGAAT 57.342 40.909 0.00 0.00 45.28 2.57
201 202 4.998051 AGTTATCCAGGTGTGGTTGAATT 58.002 39.130 0.00 0.00 45.28 2.17
202 203 4.766891 AGTTATCCAGGTGTGGTTGAATTG 59.233 41.667 0.00 0.00 45.28 2.32
203 204 3.524095 ATCCAGGTGTGGTTGAATTGA 57.476 42.857 0.00 0.00 45.28 2.57
204 205 2.582052 TCCAGGTGTGGTTGAATTGAC 58.418 47.619 0.00 0.00 45.28 3.18
205 206 2.092158 TCCAGGTGTGGTTGAATTGACA 60.092 45.455 0.00 0.00 45.28 3.58
206 207 2.692557 CCAGGTGTGGTTGAATTGACAA 59.307 45.455 0.00 0.00 39.30 3.18
207 208 3.490761 CCAGGTGTGGTTGAATTGACAAC 60.491 47.826 0.00 0.00 46.20 3.32
208 209 3.381272 CAGGTGTGGTTGAATTGACAACT 59.619 43.478 9.21 0.00 46.17 3.16
209 210 3.632145 AGGTGTGGTTGAATTGACAACTC 59.368 43.478 9.21 0.00 46.17 3.01
210 211 3.380004 GGTGTGGTTGAATTGACAACTCA 59.620 43.478 9.21 0.00 46.17 3.41
211 212 4.142271 GGTGTGGTTGAATTGACAACTCAA 60.142 41.667 7.94 7.94 46.17 3.02
212 213 4.798387 GTGTGGTTGAATTGACAACTCAAC 59.202 41.667 26.56 26.56 46.17 3.18
213 214 4.704540 TGTGGTTGAATTGACAACTCAACT 59.295 37.500 30.54 0.00 45.33 3.16
214 215 5.036737 GTGGTTGAATTGACAACTCAACTG 58.963 41.667 30.54 0.00 45.33 3.16
215 216 4.044426 GGTTGAATTGACAACTCAACTGC 58.956 43.478 30.54 17.88 45.33 4.40
216 217 4.202050 GGTTGAATTGACAACTCAACTGCT 60.202 41.667 30.54 0.00 45.33 4.24
217 218 5.008613 GGTTGAATTGACAACTCAACTGCTA 59.991 40.000 30.54 2.98 45.33 3.49
218 219 6.459573 GGTTGAATTGACAACTCAACTGCTAA 60.460 38.462 30.54 2.33 45.33 3.09
219 220 6.882610 TGAATTGACAACTCAACTGCTAAT 57.117 33.333 0.00 0.00 39.28 1.73
220 221 7.977789 TGAATTGACAACTCAACTGCTAATA 57.022 32.000 0.00 0.00 39.28 0.98
221 222 8.565896 TGAATTGACAACTCAACTGCTAATAT 57.434 30.769 0.00 0.00 39.28 1.28
222 223 9.013229 TGAATTGACAACTCAACTGCTAATATT 57.987 29.630 0.00 0.00 39.28 1.28
223 224 9.495754 GAATTGACAACTCAACTGCTAATATTC 57.504 33.333 0.00 0.00 39.28 1.75
224 225 7.977789 TTGACAACTCAACTGCTAATATTCA 57.022 32.000 0.00 0.00 31.00 2.57
225 226 7.977789 TGACAACTCAACTGCTAATATTCAA 57.022 32.000 0.00 0.00 0.00 2.69
226 227 8.032952 TGACAACTCAACTGCTAATATTCAAG 57.967 34.615 0.00 0.00 0.00 3.02
227 228 7.877612 TGACAACTCAACTGCTAATATTCAAGA 59.122 33.333 0.00 0.00 0.00 3.02
228 229 8.621532 ACAACTCAACTGCTAATATTCAAGAA 57.378 30.769 0.00 0.00 0.00 2.52
229 230 9.236006 ACAACTCAACTGCTAATATTCAAGAAT 57.764 29.630 0.00 0.52 34.93 2.40
243 244 6.721704 ATTCAAGAATATTCTTTGGCTCCC 57.278 37.500 24.94 0.00 44.70 4.30
244 245 4.536765 TCAAGAATATTCTTTGGCTCCCC 58.463 43.478 24.94 0.00 44.70 4.81
245 246 4.230502 TCAAGAATATTCTTTGGCTCCCCT 59.769 41.667 24.94 0.94 44.70 4.79
246 247 4.888626 AGAATATTCTTTGGCTCCCCTT 57.111 40.909 12.37 0.00 32.55 3.95
247 248 4.540715 AGAATATTCTTTGGCTCCCCTTG 58.459 43.478 12.37 0.00 32.55 3.61
248 249 4.017130 AGAATATTCTTTGGCTCCCCTTGT 60.017 41.667 12.37 0.00 32.55 3.16
249 250 1.928868 ATTCTTTGGCTCCCCTTGTG 58.071 50.000 0.00 0.00 0.00 3.33
250 251 0.555769 TTCTTTGGCTCCCCTTGTGT 59.444 50.000 0.00 0.00 0.00 3.72
251 252 0.110486 TCTTTGGCTCCCCTTGTGTC 59.890 55.000 0.00 0.00 0.00 3.67
252 253 1.228124 TTTGGCTCCCCTTGTGTCG 60.228 57.895 0.00 0.00 0.00 4.35
253 254 1.701031 TTTGGCTCCCCTTGTGTCGA 61.701 55.000 0.00 0.00 0.00 4.20
254 255 1.701031 TTGGCTCCCCTTGTGTCGAA 61.701 55.000 0.00 0.00 0.00 3.71
255 256 1.299976 GGCTCCCCTTGTGTCGAAT 59.700 57.895 0.00 0.00 0.00 3.34
256 257 0.744771 GGCTCCCCTTGTGTCGAATC 60.745 60.000 0.00 0.00 0.00 2.52
257 258 0.036388 GCTCCCCTTGTGTCGAATCA 60.036 55.000 0.00 0.00 0.00 2.57
258 259 1.610624 GCTCCCCTTGTGTCGAATCAA 60.611 52.381 0.00 0.00 0.00 2.57
259 260 2.941415 GCTCCCCTTGTGTCGAATCAAT 60.941 50.000 4.42 0.00 0.00 2.57
260 261 3.681594 GCTCCCCTTGTGTCGAATCAATA 60.682 47.826 4.42 0.00 0.00 1.90
261 262 4.513442 CTCCCCTTGTGTCGAATCAATAA 58.487 43.478 4.42 0.00 0.00 1.40
262 263 4.912586 TCCCCTTGTGTCGAATCAATAAA 58.087 39.130 4.42 0.00 0.00 1.40
263 264 5.505780 TCCCCTTGTGTCGAATCAATAAAT 58.494 37.500 4.42 0.00 0.00 1.40
264 265 5.949354 TCCCCTTGTGTCGAATCAATAAATT 59.051 36.000 4.42 0.00 0.00 1.82
265 266 6.435904 TCCCCTTGTGTCGAATCAATAAATTT 59.564 34.615 0.00 0.00 0.00 1.82
266 267 6.531240 CCCCTTGTGTCGAATCAATAAATTTG 59.469 38.462 0.00 0.00 0.00 2.32
267 268 6.531240 CCCTTGTGTCGAATCAATAAATTTGG 59.469 38.462 0.00 1.78 0.00 3.28
268 269 6.531240 CCTTGTGTCGAATCAATAAATTTGGG 59.469 38.462 0.00 0.00 0.00 4.12
269 270 6.582677 TGTGTCGAATCAATAAATTTGGGT 57.417 33.333 0.00 0.00 0.00 4.51
270 271 6.987386 TGTGTCGAATCAATAAATTTGGGTT 58.013 32.000 0.00 0.00 0.00 4.11
271 272 6.865726 TGTGTCGAATCAATAAATTTGGGTTG 59.134 34.615 0.00 3.99 0.00 3.77
272 273 7.087639 GTGTCGAATCAATAAATTTGGGTTGA 58.912 34.615 14.00 14.00 35.33 3.18
273 274 7.596995 GTGTCGAATCAATAAATTTGGGTTGAA 59.403 33.333 15.01 2.31 34.62 2.69
274 275 8.310382 TGTCGAATCAATAAATTTGGGTTGAAT 58.690 29.630 15.01 9.74 34.62 2.57
275 276 9.796120 GTCGAATCAATAAATTTGGGTTGAATA 57.204 29.630 15.01 4.16 34.62 1.75
276 277 9.796120 TCGAATCAATAAATTTGGGTTGAATAC 57.204 29.630 15.01 10.41 34.62 1.89
277 278 9.801873 CGAATCAATAAATTTGGGTTGAATACT 57.198 29.630 15.01 5.42 34.62 2.12
288 289 4.996788 GGTTGAATACTCTACCCTCGAA 57.003 45.455 0.00 0.00 40.45 3.71
289 290 5.334724 GGTTGAATACTCTACCCTCGAAA 57.665 43.478 0.00 0.00 40.45 3.46
290 291 5.349809 GGTTGAATACTCTACCCTCGAAAG 58.650 45.833 0.00 0.00 40.45 2.62
291 292 4.650754 TGAATACTCTACCCTCGAAAGC 57.349 45.455 0.00 0.00 0.00 3.51
292 293 4.279145 TGAATACTCTACCCTCGAAAGCT 58.721 43.478 0.00 0.00 0.00 3.74
293 294 4.098044 TGAATACTCTACCCTCGAAAGCTG 59.902 45.833 0.00 0.00 0.00 4.24
294 295 1.926108 ACTCTACCCTCGAAAGCTGT 58.074 50.000 0.00 0.00 0.00 4.40
295 296 2.249139 ACTCTACCCTCGAAAGCTGTT 58.751 47.619 0.00 0.00 0.00 3.16
296 297 2.028930 ACTCTACCCTCGAAAGCTGTTG 60.029 50.000 0.00 0.00 0.00 3.33
297 298 1.079503 CTACCCTCGAAAGCTGTTGC 58.920 55.000 0.00 0.00 40.05 4.17
298 299 0.669318 TACCCTCGAAAGCTGTTGCG 60.669 55.000 0.00 0.00 45.42 4.85
299 300 1.667830 CCCTCGAAAGCTGTTGCGA 60.668 57.895 0.00 0.00 41.74 5.10
300 301 1.021390 CCCTCGAAAGCTGTTGCGAT 61.021 55.000 0.00 0.00 43.06 4.58
301 302 0.371645 CCTCGAAAGCTGTTGCGATC 59.628 55.000 0.00 0.00 43.06 3.69
302 303 0.371645 CTCGAAAGCTGTTGCGATCC 59.628 55.000 0.00 0.00 43.06 3.36
303 304 1.019278 TCGAAAGCTGTTGCGATCCC 61.019 55.000 0.00 0.00 38.92 3.85
304 305 1.803289 GAAAGCTGTTGCGATCCCC 59.197 57.895 0.00 0.00 45.42 4.81
305 306 0.678048 GAAAGCTGTTGCGATCCCCT 60.678 55.000 0.00 0.00 45.42 4.79
306 307 0.618458 AAAGCTGTTGCGATCCCCTA 59.382 50.000 0.00 0.00 45.42 3.53
307 308 0.107654 AAGCTGTTGCGATCCCCTAC 60.108 55.000 0.00 0.00 45.42 3.18
308 309 1.220749 GCTGTTGCGATCCCCTACA 59.779 57.895 0.00 0.00 0.00 2.74
309 310 1.090052 GCTGTTGCGATCCCCTACAC 61.090 60.000 0.00 0.00 0.00 2.90
310 311 0.537188 CTGTTGCGATCCCCTACACT 59.463 55.000 0.00 0.00 0.00 3.55
311 312 0.981183 TGTTGCGATCCCCTACACTT 59.019 50.000 0.00 0.00 0.00 3.16
312 313 1.338674 TGTTGCGATCCCCTACACTTG 60.339 52.381 0.00 0.00 0.00 3.16
313 314 0.981183 TTGCGATCCCCTACACTTGT 59.019 50.000 0.00 0.00 0.00 3.16
314 315 0.249120 TGCGATCCCCTACACTTGTG 59.751 55.000 0.00 0.00 0.00 3.33
315 316 0.462047 GCGATCCCCTACACTTGTGG 60.462 60.000 5.72 0.00 0.00 4.17
316 317 0.178068 CGATCCCCTACACTTGTGGG 59.822 60.000 4.80 4.80 45.14 4.61
317 318 1.286248 GATCCCCTACACTTGTGGGT 58.714 55.000 10.56 0.00 44.20 4.51
318 319 1.209747 GATCCCCTACACTTGTGGGTC 59.790 57.143 10.56 0.00 44.20 4.46
319 320 0.104882 TCCCCTACACTTGTGGGTCA 60.105 55.000 10.56 0.00 44.20 4.02
320 321 0.991920 CCCCTACACTTGTGGGTCAT 59.008 55.000 10.56 0.00 44.20 3.06
321 322 1.065418 CCCCTACACTTGTGGGTCATC 60.065 57.143 10.56 0.00 44.20 2.92
341 342 3.359033 TCAGCCATTCATTTTCCTCCAG 58.641 45.455 0.00 0.00 0.00 3.86
384 386 6.072342 GCCTTCGAATGTCTTAACCCTTTAAA 60.072 38.462 0.00 0.00 0.00 1.52
387 389 6.536447 TCGAATGTCTTAACCCTTTAAAGGT 58.464 36.000 28.41 16.20 44.98 3.50
390 392 7.534723 AATGTCTTAACCCTTTAAAGGTTCC 57.465 36.000 28.41 12.09 44.42 3.62
422 424 8.992835 ATGCAGAATTCTAAAATTTGAGGAAC 57.007 30.769 7.86 0.00 35.21 3.62
471 473 2.602660 GCACGTGCAAAACAGACAAATT 59.397 40.909 34.52 0.00 41.59 1.82
481 484 6.953189 GCAAAACAGACAAATTGTAAACACAC 59.047 34.615 0.00 0.00 0.00 3.82
484 487 5.806286 ACAGACAAATTGTAAACACACGAG 58.194 37.500 0.00 0.00 0.00 4.18
488 491 7.906010 CAGACAAATTGTAAACACACGAGTTAA 59.094 33.333 0.00 0.00 0.00 2.01
513 516 4.163458 TCAAGTAGGTCTTTGGTTCACAGT 59.837 41.667 0.00 0.00 33.63 3.55
514 517 4.772886 AGTAGGTCTTTGGTTCACAGTT 57.227 40.909 0.00 0.00 0.00 3.16
534 538 9.467258 CACAGTTATTGAAAAACACATGAATCT 57.533 29.630 0.00 0.00 0.00 2.40
580 584 9.912634 AAAGTCAAACCACATGAAAATGTATAG 57.087 29.630 0.00 0.00 32.74 1.31
585 589 9.787532 CAAACCACATGAAAATGTATAGTTAGG 57.212 33.333 0.00 0.00 32.74 2.69
586 590 9.747898 AAACCACATGAAAATGTATAGTTAGGA 57.252 29.630 0.00 0.00 32.74 2.94
587 591 9.920946 AACCACATGAAAATGTATAGTTAGGAT 57.079 29.630 0.00 0.00 32.74 3.24
588 592 9.342308 ACCACATGAAAATGTATAGTTAGGATG 57.658 33.333 0.00 0.00 32.74 3.51
589 593 9.342308 CCACATGAAAATGTATAGTTAGGATGT 57.658 33.333 0.00 0.00 32.74 3.06
624 628 5.535406 TCAAGGTTCTTAGTCTCGTTCTTCT 59.465 40.000 0.00 0.00 0.00 2.85
625 629 6.040616 TCAAGGTTCTTAGTCTCGTTCTTCTT 59.959 38.462 0.00 0.00 0.00 2.52
626 630 6.016213 AGGTTCTTAGTCTCGTTCTTCTTC 57.984 41.667 0.00 0.00 0.00 2.87
655 660 8.645487 GCATAAGAATTTGAAAAGAGCTCAAAG 58.355 33.333 17.77 0.00 43.89 2.77
659 664 4.654091 TTTGAAAAGAGCTCAAAGTGGG 57.346 40.909 17.77 0.00 37.76 4.61
717 722 5.995282 GGTTCAAAGGAAAATTGGGTAAAGG 59.005 40.000 0.00 0.00 34.13 3.11
759 764 7.295322 TCCAATGAACCAAACACATGAATAA 57.705 32.000 0.00 0.00 0.00 1.40
760 765 7.151308 TCCAATGAACCAAACACATGAATAAC 58.849 34.615 0.00 0.00 0.00 1.89
762 767 7.440556 CCAATGAACCAAACACATGAATAACAA 59.559 33.333 0.00 0.00 0.00 2.83
848 853 7.619965 ACTCCACAAAAATTCAAGAAAGGAAA 58.380 30.769 0.00 0.00 0.00 3.13
849 854 8.267183 ACTCCACAAAAATTCAAGAAAGGAAAT 58.733 29.630 0.00 0.00 0.00 2.17
915 922 3.012518 CAGCCATAGGAAGTCAAGTTGG 58.987 50.000 2.34 0.00 0.00 3.77
935 977 0.327924 TGAACCACTCATCCGCCAAT 59.672 50.000 0.00 0.00 0.00 3.16
936 978 1.557371 TGAACCACTCATCCGCCAATA 59.443 47.619 0.00 0.00 0.00 1.90
937 979 2.026729 TGAACCACTCATCCGCCAATAA 60.027 45.455 0.00 0.00 0.00 1.40
988 1030 2.813908 CACCGCGTAACCAGAGCC 60.814 66.667 4.92 0.00 0.00 4.70
995 1037 2.686106 TAACCAGAGCCCCCGTCC 60.686 66.667 0.00 0.00 0.00 4.79
1152 1194 2.257676 GTCGCCTCGAAAGACCGT 59.742 61.111 3.93 0.00 37.72 4.83
1168 1210 1.324740 CCGTACAATCTCCCCCGACA 61.325 60.000 0.00 0.00 0.00 4.35
1170 1212 1.958579 CGTACAATCTCCCCCGACATA 59.041 52.381 0.00 0.00 0.00 2.29
1227 1269 2.047179 GGCGACGGGAAGAAGCTT 60.047 61.111 0.00 0.00 0.00 3.74
1248 1290 2.091278 TCCCATCCTCGTCTACTTCCAT 60.091 50.000 0.00 0.00 0.00 3.41
1491 1533 3.302347 CTTCTCCCGCCTGTCGCTT 62.302 63.158 0.00 0.00 36.73 4.68
1596 1638 4.778143 GGCGGCATCGTCCTGGTT 62.778 66.667 3.07 0.00 38.89 3.67
1668 1710 1.252215 TGATGGCCGAGAACGTGGTA 61.252 55.000 0.00 0.00 37.88 3.25
1993 2035 3.520290 AGAACAATATCTCGCGGACAA 57.480 42.857 6.13 0.00 0.00 3.18
2040 2082 2.926200 CCTGCGTCTGAACTTCTGTATG 59.074 50.000 0.00 0.00 0.00 2.39
2097 2140 4.077184 CGGCTAGGTTCGTGCCCA 62.077 66.667 0.00 0.00 43.42 5.36
2125 2168 7.394077 TGTGCCGAATTGGATTTGATGATATAT 59.606 33.333 0.00 0.00 42.00 0.86
2126 2169 8.892723 GTGCCGAATTGGATTTGATGATATATA 58.107 33.333 0.00 0.00 42.00 0.86
2127 2170 9.631257 TGCCGAATTGGATTTGATGATATATAT 57.369 29.630 0.00 0.00 42.00 0.86
2140 2183 8.897872 TGATGATATATATACAGCATTGCCTG 57.102 34.615 4.70 5.84 38.78 4.85
2156 2199 2.224523 TGCCTGGTTACTTGTCCTCTTG 60.225 50.000 0.00 0.00 0.00 3.02
2216 2264 7.503521 TCTAGCACAAACATAACAATCACAA 57.496 32.000 0.00 0.00 0.00 3.33
2217 2265 7.359595 TCTAGCACAAACATAACAATCACAAC 58.640 34.615 0.00 0.00 0.00 3.32
2218 2266 5.288804 AGCACAAACATAACAATCACAACC 58.711 37.500 0.00 0.00 0.00 3.77
2219 2267 5.046529 GCACAAACATAACAATCACAACCA 58.953 37.500 0.00 0.00 0.00 3.67
2220 2268 5.521735 GCACAAACATAACAATCACAACCAA 59.478 36.000 0.00 0.00 0.00 3.67
2230 2280 4.761739 ACAATCACAACCAACCTCTACATG 59.238 41.667 0.00 0.00 0.00 3.21
2240 2290 6.885922 ACCAACCTCTACATGGTTAGAATAC 58.114 40.000 0.00 0.00 44.92 1.89
2246 2296 7.038587 ACCTCTACATGGTTAGAATACACACAA 60.039 37.037 0.00 0.00 33.34 3.33
2261 2311 4.887748 ACACACAACCAACATCAACAAAA 58.112 34.783 0.00 0.00 0.00 2.44
2262 2312 5.486526 ACACACAACCAACATCAACAAAAT 58.513 33.333 0.00 0.00 0.00 1.82
2268 2318 6.533367 ACAACCAACATCAACAAAATACACAC 59.467 34.615 0.00 0.00 0.00 3.82
2283 2333 2.215196 ACACACGAATAAAACACGCCT 58.785 42.857 0.00 0.00 0.00 5.52
2291 2341 4.495472 CGAATAAAACACGCCTGCAAATAG 59.505 41.667 0.00 0.00 0.00 1.73
2324 2374 8.085296 CACACATAACCAAAACTATGCCTAAAA 58.915 33.333 0.00 0.00 0.00 1.52
2334 2384 6.887626 AACTATGCCTAAAACGAGGAAAAA 57.112 33.333 0.00 0.00 39.15 1.94
2336 2386 6.235664 ACTATGCCTAAAACGAGGAAAAAGA 58.764 36.000 0.00 0.00 39.15 2.52
2338 2388 5.432885 TGCCTAAAACGAGGAAAAAGAAG 57.567 39.130 0.00 0.00 39.15 2.85
2340 2390 5.238650 TGCCTAAAACGAGGAAAAAGAAGAG 59.761 40.000 0.00 0.00 39.15 2.85
2350 2401 3.504134 GGAAAAAGAAGAGGACCTCAAGC 59.496 47.826 23.60 11.60 32.06 4.01
2361 2412 3.197766 AGGACCTCAAGCGATCAACAATA 59.802 43.478 0.00 0.00 0.00 1.90
2376 2427 8.233868 CGATCAACAATAATCCACAAACTACAA 58.766 33.333 0.00 0.00 0.00 2.41
2410 2461 8.572855 TTGTTCACACCAATCATATATTGACA 57.427 30.769 0.00 0.00 37.11 3.58
2412 2463 8.839343 TGTTCACACCAATCATATATTGACATC 58.161 33.333 0.00 0.00 37.11 3.06
2442 2493 7.883229 AACGAAAAAGTTCTTCAACAACAAT 57.117 28.000 0.00 0.00 34.60 2.71
2459 2510 4.248691 ACAATGCCTTCAGAAAGAAAGC 57.751 40.909 0.00 0.00 42.73 3.51
2464 2515 2.135933 CCTTCAGAAAGAAAGCGACGT 58.864 47.619 0.00 0.00 35.40 4.34
2465 2516 2.544267 CCTTCAGAAAGAAAGCGACGTT 59.456 45.455 0.00 0.00 35.40 3.99
2466 2517 3.363084 CCTTCAGAAAGAAAGCGACGTTC 60.363 47.826 0.00 0.00 35.40 3.95
2467 2518 2.816689 TCAGAAAGAAAGCGACGTTCA 58.183 42.857 0.00 0.00 0.00 3.18
2468 2519 3.191669 TCAGAAAGAAAGCGACGTTCAA 58.808 40.909 0.00 0.00 0.00 2.69
2469 2520 3.245284 TCAGAAAGAAAGCGACGTTCAAG 59.755 43.478 0.00 0.00 0.00 3.02
2470 2521 2.032808 AGAAAGAAAGCGACGTTCAAGC 60.033 45.455 0.00 0.00 0.00 4.01
2471 2522 1.295792 AAGAAAGCGACGTTCAAGCA 58.704 45.000 0.00 0.00 0.00 3.91
2472 2523 1.512926 AGAAAGCGACGTTCAAGCAT 58.487 45.000 0.00 0.00 0.00 3.79
2473 2524 1.461127 AGAAAGCGACGTTCAAGCATC 59.539 47.619 0.00 0.00 0.00 3.91
2474 2525 0.163788 AAAGCGACGTTCAAGCATCG 59.836 50.000 0.00 0.00 37.63 3.84
2476 2527 2.395690 CGACGTTCAAGCATCGCC 59.604 61.111 0.00 0.00 0.00 5.54
2481 2532 0.179215 CGTTCAAGCATCGCCTTCAC 60.179 55.000 0.00 0.00 0.00 3.18
2492 2543 1.153349 GCCTTCACCGGATCTGACC 60.153 63.158 9.46 0.00 0.00 4.02
2494 2545 0.108138 CCTTCACCGGATCTGACCAC 60.108 60.000 9.46 0.00 0.00 4.16
2519 2570 8.437575 ACCAAAGACTAGATTCTAGGTTTTCAA 58.562 33.333 21.75 0.00 32.81 2.69
2589 2641 8.515473 GGTAACAATGTAAAAACAATGTCCTC 57.485 34.615 0.10 0.00 33.12 3.71
2601 2653 0.681733 ATGTCCTCGTGCAACTGAGT 59.318 50.000 10.05 0.00 36.31 3.41
2603 2655 1.004277 GTCCTCGTGCAACTGAGTCG 61.004 60.000 10.05 0.00 36.31 4.18
2607 2659 2.375766 CGTGCAACTGAGTCGAGGC 61.376 63.158 0.00 0.00 31.75 4.70
2608 2660 1.005630 GTGCAACTGAGTCGAGGCT 60.006 57.895 0.00 0.00 0.00 4.58
2619 2671 2.357517 CGAGGCTCGTGCTTGGTT 60.358 61.111 27.92 0.00 39.59 3.67
2620 2672 2.383527 CGAGGCTCGTGCTTGGTTC 61.384 63.158 27.92 0.00 39.59 3.62
2632 2684 1.335496 GCTTGGTTCGTTGCCTTACAA 59.665 47.619 0.00 0.00 35.33 2.41
2649 2701 3.325201 AACATCCCCGCGAAGACCC 62.325 63.158 8.23 0.00 0.00 4.46
2856 2910 7.425224 TTTTTGTTTATCCCAAGAAACTCCA 57.575 32.000 0.00 0.00 37.46 3.86
2860 2914 5.710099 TGTTTATCCCAAGAAACTCCATGTC 59.290 40.000 0.00 0.00 37.46 3.06
2884 2940 5.232202 CGAGATTGTGTGCTCGTATTGTATT 59.768 40.000 0.00 0.00 46.43 1.89
2938 2994 8.523464 CATGTTGAGTAGTTTTTCAAAAACTCG 58.477 33.333 27.73 6.60 38.03 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.101415 CTCGTAGGCAATGGATCAGTGA 59.899 50.000 0.00 0.00 30.53 3.41
1 2 2.159043 ACTCGTAGGCAATGGATCAGTG 60.159 50.000 0.00 0.00 32.29 3.66
2 3 2.111384 ACTCGTAGGCAATGGATCAGT 58.889 47.619 0.00 0.00 0.00 3.41
3 4 2.898729 ACTCGTAGGCAATGGATCAG 57.101 50.000 0.00 0.00 0.00 2.90
5 6 4.394920 TGAAAAACTCGTAGGCAATGGATC 59.605 41.667 0.00 0.00 0.00 3.36
6 7 4.331968 TGAAAAACTCGTAGGCAATGGAT 58.668 39.130 0.00 0.00 0.00 3.41
7 8 3.745799 TGAAAAACTCGTAGGCAATGGA 58.254 40.909 0.00 0.00 0.00 3.41
8 9 4.701956 ATGAAAAACTCGTAGGCAATGG 57.298 40.909 0.00 0.00 0.00 3.16
9 10 9.385902 CAATATATGAAAAACTCGTAGGCAATG 57.614 33.333 0.00 0.00 0.00 2.82
10 11 9.120538 ACAATATATGAAAAACTCGTAGGCAAT 57.879 29.630 0.00 0.00 0.00 3.56
11 12 8.394877 CACAATATATGAAAAACTCGTAGGCAA 58.605 33.333 0.00 0.00 0.00 4.52
12 13 7.466725 GCACAATATATGAAAAACTCGTAGGCA 60.467 37.037 0.00 0.00 0.00 4.75
13 14 6.851330 GCACAATATATGAAAAACTCGTAGGC 59.149 38.462 0.00 0.00 0.00 3.93
14 15 8.142994 AGCACAATATATGAAAAACTCGTAGG 57.857 34.615 0.00 0.00 0.00 3.18
15 16 9.638300 GAAGCACAATATATGAAAAACTCGTAG 57.362 33.333 0.00 0.00 0.00 3.51
16 17 8.325282 CGAAGCACAATATATGAAAAACTCGTA 58.675 33.333 0.00 0.00 0.00 3.43
17 18 7.180079 CGAAGCACAATATATGAAAAACTCGT 58.820 34.615 0.00 0.00 0.00 4.18
18 19 7.580818 CGAAGCACAATATATGAAAAACTCG 57.419 36.000 0.00 0.00 0.00 4.18
38 39 6.577427 AGCAACGAAAAAGTAAATAAGCGAAG 59.423 34.615 0.00 0.00 0.00 3.79
39 40 6.432107 AGCAACGAAAAAGTAAATAAGCGAA 58.568 32.000 0.00 0.00 0.00 4.70
40 41 5.992729 AGCAACGAAAAAGTAAATAAGCGA 58.007 33.333 0.00 0.00 0.00 4.93
41 42 7.013529 AGTAGCAACGAAAAAGTAAATAAGCG 58.986 34.615 0.00 0.00 0.00 4.68
42 43 9.983804 ATAGTAGCAACGAAAAAGTAAATAAGC 57.016 29.630 0.00 0.00 0.00 3.09
50 51 8.995220 TGATTGTAATAGTAGCAACGAAAAAGT 58.005 29.630 0.00 0.00 0.00 2.66
51 52 9.262472 GTGATTGTAATAGTAGCAACGAAAAAG 57.738 33.333 0.00 0.00 0.00 2.27
52 53 8.995220 AGTGATTGTAATAGTAGCAACGAAAAA 58.005 29.630 0.00 0.00 0.00 1.94
53 54 8.542497 AGTGATTGTAATAGTAGCAACGAAAA 57.458 30.769 0.00 0.00 0.00 2.29
54 55 9.079833 GTAGTGATTGTAATAGTAGCAACGAAA 57.920 33.333 0.00 0.00 0.00 3.46
55 56 8.245491 TGTAGTGATTGTAATAGTAGCAACGAA 58.755 33.333 0.00 0.00 0.00 3.85
56 57 7.764331 TGTAGTGATTGTAATAGTAGCAACGA 58.236 34.615 0.00 0.00 0.00 3.85
57 58 7.980742 TGTAGTGATTGTAATAGTAGCAACG 57.019 36.000 0.00 0.00 0.00 4.10
60 61 9.713713 TGTTTTGTAGTGATTGTAATAGTAGCA 57.286 29.630 0.00 0.00 0.00 3.49
61 62 9.968743 GTGTTTTGTAGTGATTGTAATAGTAGC 57.031 33.333 0.00 0.00 0.00 3.58
63 64 9.999660 TGGTGTTTTGTAGTGATTGTAATAGTA 57.000 29.630 0.00 0.00 0.00 1.82
64 65 8.911918 TGGTGTTTTGTAGTGATTGTAATAGT 57.088 30.769 0.00 0.00 0.00 2.12
67 68 9.877178 TTTTTGGTGTTTTGTAGTGATTGTAAT 57.123 25.926 0.00 0.00 0.00 1.89
68 69 9.877178 ATTTTTGGTGTTTTGTAGTGATTGTAA 57.123 25.926 0.00 0.00 0.00 2.41
73 74 8.987890 GCAATATTTTTGGTGTTTTGTAGTGAT 58.012 29.630 0.00 0.00 0.00 3.06
74 75 8.200792 AGCAATATTTTTGGTGTTTTGTAGTGA 58.799 29.630 0.00 0.00 0.00 3.41
75 76 8.364129 AGCAATATTTTTGGTGTTTTGTAGTG 57.636 30.769 0.00 0.00 0.00 2.74
143 144 8.936864 CAGCAAAGTATTTAGTAGCAAAGTAGT 58.063 33.333 0.00 0.00 35.03 2.73
144 145 7.905493 GCAGCAAAGTATTTAGTAGCAAAGTAG 59.095 37.037 0.00 0.00 35.03 2.57
145 146 7.389330 TGCAGCAAAGTATTTAGTAGCAAAGTA 59.611 33.333 0.00 0.00 35.03 2.24
146 147 6.206634 TGCAGCAAAGTATTTAGTAGCAAAGT 59.793 34.615 0.00 0.00 35.03 2.66
147 148 6.611381 TGCAGCAAAGTATTTAGTAGCAAAG 58.389 36.000 0.00 0.00 35.03 2.77
148 149 6.429692 TCTGCAGCAAAGTATTTAGTAGCAAA 59.570 34.615 9.47 0.00 35.03 3.68
149 150 5.937540 TCTGCAGCAAAGTATTTAGTAGCAA 59.062 36.000 9.47 0.00 35.03 3.91
150 151 5.487433 TCTGCAGCAAAGTATTTAGTAGCA 58.513 37.500 9.47 0.00 35.03 3.49
151 152 6.610741 ATCTGCAGCAAAGTATTTAGTAGC 57.389 37.500 9.47 0.00 35.03 3.58
160 161 9.273016 GGATAACTTAATATCTGCAGCAAAGTA 57.727 33.333 9.47 0.00 33.63 2.24
161 162 7.775093 TGGATAACTTAATATCTGCAGCAAAGT 59.225 33.333 9.47 10.46 33.63 2.66
162 163 8.158169 TGGATAACTTAATATCTGCAGCAAAG 57.842 34.615 9.47 9.85 33.63 2.77
163 164 7.229306 CCTGGATAACTTAATATCTGCAGCAAA 59.771 37.037 9.47 0.00 33.63 3.68
164 165 6.712095 CCTGGATAACTTAATATCTGCAGCAA 59.288 38.462 9.47 0.00 33.63 3.91
165 166 6.183361 ACCTGGATAACTTAATATCTGCAGCA 60.183 38.462 9.47 0.00 33.63 4.41
166 167 6.148480 CACCTGGATAACTTAATATCTGCAGC 59.852 42.308 9.47 0.00 33.63 5.25
167 168 7.172190 CACACCTGGATAACTTAATATCTGCAG 59.828 40.741 7.63 7.63 33.63 4.41
168 169 6.992123 CACACCTGGATAACTTAATATCTGCA 59.008 38.462 0.00 0.00 33.63 4.41
169 170 6.428159 CCACACCTGGATAACTTAATATCTGC 59.572 42.308 0.00 0.00 40.55 4.26
170 171 7.509546 ACCACACCTGGATAACTTAATATCTG 58.490 38.462 0.00 0.00 40.55 2.90
171 172 7.691993 ACCACACCTGGATAACTTAATATCT 57.308 36.000 0.00 0.00 40.55 1.98
172 173 7.990886 TCAACCACACCTGGATAACTTAATATC 59.009 37.037 0.00 0.00 40.55 1.63
173 174 7.867921 TCAACCACACCTGGATAACTTAATAT 58.132 34.615 0.00 0.00 40.55 1.28
174 175 7.260387 TCAACCACACCTGGATAACTTAATA 57.740 36.000 0.00 0.00 40.55 0.98
175 176 6.134535 TCAACCACACCTGGATAACTTAAT 57.865 37.500 0.00 0.00 40.55 1.40
176 177 5.570205 TCAACCACACCTGGATAACTTAA 57.430 39.130 0.00 0.00 40.55 1.85
177 178 5.570205 TTCAACCACACCTGGATAACTTA 57.430 39.130 0.00 0.00 40.55 2.24
178 179 4.447138 TTCAACCACACCTGGATAACTT 57.553 40.909 0.00 0.00 40.55 2.66
179 180 4.657814 ATTCAACCACACCTGGATAACT 57.342 40.909 0.00 0.00 40.55 2.24
180 181 4.764823 TCAATTCAACCACACCTGGATAAC 59.235 41.667 0.00 0.00 40.55 1.89
181 182 4.764823 GTCAATTCAACCACACCTGGATAA 59.235 41.667 0.00 0.00 40.55 1.75
182 183 4.202514 TGTCAATTCAACCACACCTGGATA 60.203 41.667 0.00 0.00 40.55 2.59
183 184 3.157087 GTCAATTCAACCACACCTGGAT 58.843 45.455 0.00 0.00 40.55 3.41
184 185 2.092158 TGTCAATTCAACCACACCTGGA 60.092 45.455 0.00 0.00 40.55 3.86
185 186 2.305928 TGTCAATTCAACCACACCTGG 58.694 47.619 0.00 0.00 44.26 4.45
186 187 3.381272 AGTTGTCAATTCAACCACACCTG 59.619 43.478 6.44 0.00 45.90 4.00
187 188 3.631250 AGTTGTCAATTCAACCACACCT 58.369 40.909 6.44 0.00 45.90 4.00
188 189 3.380004 TGAGTTGTCAATTCAACCACACC 59.620 43.478 8.22 0.00 45.90 4.16
189 190 4.630894 TGAGTTGTCAATTCAACCACAC 57.369 40.909 8.22 0.00 45.90 3.82
190 191 4.992688 GTTGAGTTGTCAATTCAACCACA 58.007 39.130 29.81 8.46 46.35 4.17
195 196 6.691754 TTAGCAGTTGAGTTGTCAATTCAA 57.308 33.333 16.95 16.95 44.58 2.69
196 197 6.882610 ATTAGCAGTTGAGTTGTCAATTCA 57.117 33.333 6.67 6.67 44.58 2.57
197 198 9.495754 GAATATTAGCAGTTGAGTTGTCAATTC 57.504 33.333 1.25 1.25 44.58 2.17
198 199 9.013229 TGAATATTAGCAGTTGAGTTGTCAATT 57.987 29.630 0.00 0.00 44.58 2.32
199 200 8.565896 TGAATATTAGCAGTTGAGTTGTCAAT 57.434 30.769 0.00 0.00 44.58 2.57
200 201 7.977789 TGAATATTAGCAGTTGAGTTGTCAA 57.022 32.000 0.00 0.00 40.55 3.18
201 202 7.877612 TCTTGAATATTAGCAGTTGAGTTGTCA 59.122 33.333 0.00 0.00 0.00 3.58
202 203 8.256611 TCTTGAATATTAGCAGTTGAGTTGTC 57.743 34.615 0.00 0.00 0.00 3.18
203 204 8.621532 TTCTTGAATATTAGCAGTTGAGTTGT 57.378 30.769 0.00 0.00 0.00 3.32
217 218 8.864087 GGGAGCCAAAGAATATTCTTGAATATT 58.136 33.333 27.25 21.55 46.22 1.28
218 219 7.452813 GGGGAGCCAAAGAATATTCTTGAATAT 59.547 37.037 27.25 14.68 46.22 1.28
219 220 6.777580 GGGGAGCCAAAGAATATTCTTGAATA 59.222 38.462 27.25 5.66 46.22 1.75
220 221 5.600069 GGGGAGCCAAAGAATATTCTTGAAT 59.400 40.000 27.25 15.58 46.22 2.57
221 222 4.956075 GGGGAGCCAAAGAATATTCTTGAA 59.044 41.667 27.25 0.00 46.22 2.69
222 223 4.230502 AGGGGAGCCAAAGAATATTCTTGA 59.769 41.667 27.25 0.00 46.22 3.02
223 224 4.540715 AGGGGAGCCAAAGAATATTCTTG 58.459 43.478 27.25 20.35 46.22 3.02
225 226 4.017130 ACAAGGGGAGCCAAAGAATATTCT 60.017 41.667 12.37 12.37 39.74 2.40
226 227 4.098501 CACAAGGGGAGCCAAAGAATATTC 59.901 45.833 7.41 7.41 0.00 1.75
227 228 4.026052 CACAAGGGGAGCCAAAGAATATT 58.974 43.478 0.00 0.00 0.00 1.28
228 229 3.011708 ACACAAGGGGAGCCAAAGAATAT 59.988 43.478 0.00 0.00 0.00 1.28
229 230 2.378547 ACACAAGGGGAGCCAAAGAATA 59.621 45.455 0.00 0.00 0.00 1.75
230 231 1.147817 ACACAAGGGGAGCCAAAGAAT 59.852 47.619 0.00 0.00 0.00 2.40
231 232 0.555769 ACACAAGGGGAGCCAAAGAA 59.444 50.000 0.00 0.00 0.00 2.52
232 233 0.110486 GACACAAGGGGAGCCAAAGA 59.890 55.000 0.00 0.00 0.00 2.52
233 234 1.237285 CGACACAAGGGGAGCCAAAG 61.237 60.000 0.00 0.00 0.00 2.77
234 235 1.228124 CGACACAAGGGGAGCCAAA 60.228 57.895 0.00 0.00 0.00 3.28
235 236 1.701031 TTCGACACAAGGGGAGCCAA 61.701 55.000 0.00 0.00 0.00 4.52
236 237 1.488705 ATTCGACACAAGGGGAGCCA 61.489 55.000 0.00 0.00 0.00 4.75
237 238 0.744771 GATTCGACACAAGGGGAGCC 60.745 60.000 0.00 0.00 0.00 4.70
238 239 0.036388 TGATTCGACACAAGGGGAGC 60.036 55.000 0.00 0.00 0.00 4.70
239 240 2.472695 TTGATTCGACACAAGGGGAG 57.527 50.000 0.00 0.00 0.00 4.30
240 241 4.561500 TTATTGATTCGACACAAGGGGA 57.438 40.909 8.90 0.00 0.00 4.81
241 242 5.835113 ATTTATTGATTCGACACAAGGGG 57.165 39.130 8.90 0.00 0.00 4.79
242 243 6.531240 CCAAATTTATTGATTCGACACAAGGG 59.469 38.462 8.90 0.00 0.00 3.95
243 244 6.531240 CCCAAATTTATTGATTCGACACAAGG 59.469 38.462 8.90 3.91 0.00 3.61
244 245 7.090173 ACCCAAATTTATTGATTCGACACAAG 58.910 34.615 8.90 0.00 0.00 3.16
245 246 6.987386 ACCCAAATTTATTGATTCGACACAA 58.013 32.000 6.03 6.03 0.00 3.33
246 247 6.582677 ACCCAAATTTATTGATTCGACACA 57.417 33.333 0.00 0.00 0.00 3.72
247 248 7.087639 TCAACCCAAATTTATTGATTCGACAC 58.912 34.615 7.33 0.00 0.00 3.67
248 249 7.220741 TCAACCCAAATTTATTGATTCGACA 57.779 32.000 7.33 0.00 0.00 4.35
249 250 8.702163 ATTCAACCCAAATTTATTGATTCGAC 57.298 30.769 10.73 0.00 31.45 4.20
250 251 9.796120 GTATTCAACCCAAATTTATTGATTCGA 57.204 29.630 10.73 0.00 31.45 3.71
251 252 9.801873 AGTATTCAACCCAAATTTATTGATTCG 57.198 29.630 10.73 0.00 31.45 3.34
267 268 4.996788 TTCGAGGGTAGAGTATTCAACC 57.003 45.455 0.00 0.00 0.00 3.77
268 269 4.804665 GCTTTCGAGGGTAGAGTATTCAAC 59.195 45.833 0.00 0.00 0.00 3.18
269 270 4.710375 AGCTTTCGAGGGTAGAGTATTCAA 59.290 41.667 0.00 0.00 0.00 2.69
270 271 4.098044 CAGCTTTCGAGGGTAGAGTATTCA 59.902 45.833 0.00 0.00 0.00 2.57
271 272 4.098196 ACAGCTTTCGAGGGTAGAGTATTC 59.902 45.833 0.00 0.00 0.00 1.75
272 273 4.024670 ACAGCTTTCGAGGGTAGAGTATT 58.975 43.478 0.00 0.00 0.00 1.89
273 274 3.633418 ACAGCTTTCGAGGGTAGAGTAT 58.367 45.455 0.00 0.00 0.00 2.12
274 275 3.083122 ACAGCTTTCGAGGGTAGAGTA 57.917 47.619 0.00 0.00 0.00 2.59
275 276 1.926108 ACAGCTTTCGAGGGTAGAGT 58.074 50.000 0.00 0.00 0.00 3.24
276 277 2.611518 CAACAGCTTTCGAGGGTAGAG 58.388 52.381 0.00 0.00 0.00 2.43
277 278 1.337823 GCAACAGCTTTCGAGGGTAGA 60.338 52.381 0.00 0.00 0.00 2.59
278 279 1.079503 GCAACAGCTTTCGAGGGTAG 58.920 55.000 0.00 0.00 0.00 3.18
279 280 0.669318 CGCAACAGCTTTCGAGGGTA 60.669 55.000 0.00 0.00 0.00 3.69
280 281 1.961277 CGCAACAGCTTTCGAGGGT 60.961 57.895 0.00 0.00 0.00 4.34
281 282 1.021390 ATCGCAACAGCTTTCGAGGG 61.021 55.000 0.00 0.00 34.30 4.30
282 283 0.371645 GATCGCAACAGCTTTCGAGG 59.628 55.000 0.00 0.00 34.30 4.63
283 284 0.371645 GGATCGCAACAGCTTTCGAG 59.628 55.000 0.00 0.00 34.30 4.04
284 285 1.019278 GGGATCGCAACAGCTTTCGA 61.019 55.000 4.64 0.00 35.34 3.71
285 286 1.425428 GGGATCGCAACAGCTTTCG 59.575 57.895 4.64 0.00 0.00 3.46
286 287 0.678048 AGGGGATCGCAACAGCTTTC 60.678 55.000 12.32 0.00 0.00 2.62
287 288 0.618458 TAGGGGATCGCAACAGCTTT 59.382 50.000 12.32 0.00 0.00 3.51
288 289 0.107654 GTAGGGGATCGCAACAGCTT 60.108 55.000 12.32 0.00 0.00 3.74
289 290 1.264749 TGTAGGGGATCGCAACAGCT 61.265 55.000 12.32 1.62 0.00 4.24
290 291 1.090052 GTGTAGGGGATCGCAACAGC 61.090 60.000 12.32 6.69 0.00 4.40
291 292 0.537188 AGTGTAGGGGATCGCAACAG 59.463 55.000 12.32 0.00 0.00 3.16
292 293 0.981183 AAGTGTAGGGGATCGCAACA 59.019 50.000 12.32 11.91 0.00 3.33
293 294 1.338769 ACAAGTGTAGGGGATCGCAAC 60.339 52.381 12.32 9.48 0.00 4.17
294 295 0.981183 ACAAGTGTAGGGGATCGCAA 59.019 50.000 12.32 0.00 0.00 4.85
295 296 0.249120 CACAAGTGTAGGGGATCGCA 59.751 55.000 12.32 0.00 0.00 5.10
296 297 0.462047 CCACAAGTGTAGGGGATCGC 60.462 60.000 0.06 0.06 0.00 4.58
297 298 0.178068 CCCACAAGTGTAGGGGATCG 59.822 60.000 1.36 0.00 43.57 3.69
303 304 2.936993 GCTGATGACCCACAAGTGTAGG 60.937 54.545 0.00 0.00 32.88 3.18
304 305 2.350522 GCTGATGACCCACAAGTGTAG 58.649 52.381 0.00 0.00 0.00 2.74
305 306 1.003118 GGCTGATGACCCACAAGTGTA 59.997 52.381 0.00 0.00 0.00 2.90
306 307 0.250901 GGCTGATGACCCACAAGTGT 60.251 55.000 0.00 0.00 0.00 3.55
307 308 0.250858 TGGCTGATGACCCACAAGTG 60.251 55.000 0.00 0.00 0.00 3.16
308 309 0.700564 ATGGCTGATGACCCACAAGT 59.299 50.000 0.00 0.00 33.17 3.16
309 310 1.747355 GAATGGCTGATGACCCACAAG 59.253 52.381 0.00 0.00 33.17 3.16
310 311 1.075212 TGAATGGCTGATGACCCACAA 59.925 47.619 0.00 0.00 33.17 3.33
311 312 0.697658 TGAATGGCTGATGACCCACA 59.302 50.000 0.00 0.00 33.17 4.17
312 313 2.062971 ATGAATGGCTGATGACCCAC 57.937 50.000 0.00 0.00 33.17 4.61
313 314 2.832643 AATGAATGGCTGATGACCCA 57.167 45.000 0.00 0.00 35.21 4.51
314 315 3.181472 GGAAAATGAATGGCTGATGACCC 60.181 47.826 0.00 0.00 0.00 4.46
315 316 3.703052 AGGAAAATGAATGGCTGATGACC 59.297 43.478 0.00 0.00 0.00 4.02
316 317 4.202090 GGAGGAAAATGAATGGCTGATGAC 60.202 45.833 0.00 0.00 0.00 3.06
317 318 3.956199 GGAGGAAAATGAATGGCTGATGA 59.044 43.478 0.00 0.00 0.00 2.92
318 319 3.702548 TGGAGGAAAATGAATGGCTGATG 59.297 43.478 0.00 0.00 0.00 3.07
319 320 3.958798 CTGGAGGAAAATGAATGGCTGAT 59.041 43.478 0.00 0.00 0.00 2.90
320 321 3.245371 ACTGGAGGAAAATGAATGGCTGA 60.245 43.478 0.00 0.00 0.00 4.26
321 322 3.094572 ACTGGAGGAAAATGAATGGCTG 58.905 45.455 0.00 0.00 0.00 4.85
341 342 5.463724 CGAAGGCAAATCTAGAGGTGAATAC 59.536 44.000 9.15 0.00 0.00 1.89
384 386 3.806949 TTCTGCATACCAAAGGAACCT 57.193 42.857 0.00 0.00 0.00 3.50
387 389 8.415950 TTTTAGAATTCTGCATACCAAAGGAA 57.584 30.769 18.47 0.00 0.00 3.36
427 429 9.350357 GTGCATTCATATCATATTTCCATGTTC 57.650 33.333 0.00 0.00 0.00 3.18
471 473 6.101332 ACTTGACTTAACTCGTGTGTTTACA 58.899 36.000 0.00 0.00 0.00 2.41
481 484 5.634020 CCAAAGACCTACTTGACTTAACTCG 59.366 44.000 0.00 0.00 38.98 4.18
484 487 6.764560 TGAACCAAAGACCTACTTGACTTAAC 59.235 38.462 0.00 0.00 38.98 2.01
488 491 4.163458 TGTGAACCAAAGACCTACTTGACT 59.837 41.667 0.00 0.00 38.98 3.41
577 581 9.797642 TTGATTGCATGATAACATCCTAACTAT 57.202 29.630 0.00 0.00 34.15 2.12
578 582 9.276590 CTTGATTGCATGATAACATCCTAACTA 57.723 33.333 0.00 0.00 34.15 2.24
579 583 7.230108 CCTTGATTGCATGATAACATCCTAACT 59.770 37.037 0.00 0.00 34.15 2.24
580 584 7.013655 ACCTTGATTGCATGATAACATCCTAAC 59.986 37.037 0.00 0.00 34.15 2.34
583 587 5.452255 ACCTTGATTGCATGATAACATCCT 58.548 37.500 0.00 0.00 34.15 3.24
584 588 5.779529 ACCTTGATTGCATGATAACATCC 57.220 39.130 0.00 0.00 34.15 3.51
585 589 7.035840 AGAACCTTGATTGCATGATAACATC 57.964 36.000 0.00 0.00 34.15 3.06
586 590 7.414222 AAGAACCTTGATTGCATGATAACAT 57.586 32.000 0.00 0.00 37.19 2.71
587 591 6.839124 AAGAACCTTGATTGCATGATAACA 57.161 33.333 0.00 0.00 0.00 2.41
588 592 7.989826 ACTAAGAACCTTGATTGCATGATAAC 58.010 34.615 0.00 0.00 0.00 1.89
589 593 8.049117 AGACTAAGAACCTTGATTGCATGATAA 58.951 33.333 0.00 0.00 0.00 1.75
590 594 7.568349 AGACTAAGAACCTTGATTGCATGATA 58.432 34.615 0.00 0.00 0.00 2.15
591 595 6.421485 AGACTAAGAACCTTGATTGCATGAT 58.579 36.000 0.00 0.00 0.00 2.45
592 596 5.809001 AGACTAAGAACCTTGATTGCATGA 58.191 37.500 0.00 0.00 0.00 3.07
593 597 5.220548 CGAGACTAAGAACCTTGATTGCATG 60.221 44.000 0.00 0.00 0.00 4.06
598 602 6.347859 AGAACGAGACTAAGAACCTTGATT 57.652 37.500 0.00 0.00 0.00 2.57
601 605 5.774630 AGAAGAACGAGACTAAGAACCTTG 58.225 41.667 0.00 0.00 0.00 3.61
624 628 6.582295 GCTCTTTTCAAATTCTTATGCACGAA 59.418 34.615 0.00 0.00 0.00 3.85
625 629 6.072508 AGCTCTTTTCAAATTCTTATGCACGA 60.073 34.615 0.00 0.00 0.00 4.35
626 630 6.088824 AGCTCTTTTCAAATTCTTATGCACG 58.911 36.000 0.00 0.00 0.00 5.34
655 660 2.681097 GCAGAGGGATTCTAACACCCAC 60.681 54.545 0.00 0.00 45.43 4.61
659 664 4.396478 GGAAAAGCAGAGGGATTCTAACAC 59.604 45.833 0.00 0.00 33.83 3.32
724 729 9.018582 TGTTTGGTTCATTGGAAATTTTTCTTT 57.981 25.926 3.28 0.00 37.35 2.52
738 743 7.984050 TGTTGTTATTCATGTGTTTGGTTCATT 59.016 29.630 0.00 0.00 0.00 2.57
739 744 7.495901 TGTTGTTATTCATGTGTTTGGTTCAT 58.504 30.769 0.00 0.00 0.00 2.57
759 764 8.153550 AGTGAAGTTTCTTCTCTATGATGTTGT 58.846 33.333 10.87 0.00 0.00 3.32
760 765 8.545229 AGTGAAGTTTCTTCTCTATGATGTTG 57.455 34.615 10.87 0.00 0.00 3.33
762 767 9.213799 GAAAGTGAAGTTTCTTCTCTATGATGT 57.786 33.333 12.33 0.00 34.19 3.06
896 903 2.749621 CACCAACTTGACTTCCTATGGC 59.250 50.000 0.00 0.00 0.00 4.40
915 922 0.605319 TTGGCGGATGAGTGGTTCAC 60.605 55.000 0.00 0.00 38.99 3.18
935 977 4.220821 TGTTTGTTGAAGCCCAAGTTGTTA 59.779 37.500 1.45 0.00 35.03 2.41
936 978 3.007398 TGTTTGTTGAAGCCCAAGTTGTT 59.993 39.130 1.45 0.00 35.03 2.83
937 979 2.564947 TGTTTGTTGAAGCCCAAGTTGT 59.435 40.909 1.45 0.00 35.03 3.32
978 1020 2.686106 GGACGGGGGCTCTGGTTA 60.686 66.667 0.00 0.00 0.00 2.85
1152 1194 1.968493 GCTATGTCGGGGGAGATTGTA 59.032 52.381 0.00 0.00 0.00 2.41
1208 1250 4.736896 GCTTCTTCCCGTCGCCGT 62.737 66.667 0.00 0.00 0.00 5.68
1227 1269 1.286849 TGGAAGTAGACGAGGATGGGA 59.713 52.381 0.00 0.00 0.00 4.37
1231 1273 1.689273 GCCATGGAAGTAGACGAGGAT 59.311 52.381 18.40 0.00 0.00 3.24
1380 1422 1.676678 GCCAGGAGTCATCGTAGGCA 61.677 60.000 0.00 0.00 37.41 4.75
1469 1511 3.358076 GACAGGCGGGAGAAGTCGG 62.358 68.421 0.00 0.00 0.00 4.79
1590 1632 1.657804 AGAAGTAGGGGTGAACCAGG 58.342 55.000 1.16 0.00 42.91 4.45
1596 1638 1.205460 GGCCCAAGAAGTAGGGGTGA 61.205 60.000 0.00 0.00 45.58 4.02
1668 1710 2.281484 ACCACGCGCCACATCTTT 60.281 55.556 5.73 0.00 0.00 2.52
1893 1935 0.109086 CGACGAGATGGAAGCAGTGT 60.109 55.000 0.00 0.00 0.00 3.55
1993 2035 0.323725 ATGCGGTCTGAAAATGCCCT 60.324 50.000 0.00 0.00 0.00 5.19
2040 2082 3.005684 TCCCAGATGCATCAACAACAAAC 59.994 43.478 27.81 0.00 0.00 2.93
2097 2140 4.160065 TCATCAAATCCAATTCGGCACAAT 59.840 37.500 0.00 0.00 33.14 2.71
2125 2168 4.771114 AGTAACCAGGCAATGCTGTATA 57.229 40.909 4.82 0.00 0.00 1.47
2126 2169 3.652057 AGTAACCAGGCAATGCTGTAT 57.348 42.857 4.82 0.00 0.00 2.29
2127 2170 3.081061 CAAGTAACCAGGCAATGCTGTA 58.919 45.455 4.82 0.00 0.00 2.74
2128 2171 1.888512 CAAGTAACCAGGCAATGCTGT 59.111 47.619 4.82 0.00 0.00 4.40
2189 2234 6.470235 GTGATTGTTATGTTTGTGCTAGATGC 59.530 38.462 0.00 0.00 43.25 3.91
2193 2238 6.582295 GGTTGTGATTGTTATGTTTGTGCTAG 59.418 38.462 0.00 0.00 0.00 3.42
2211 2259 2.708861 ACCATGTAGAGGTTGGTTGTGA 59.291 45.455 0.00 0.00 40.87 3.58
2220 2268 6.439375 TGTGTGTATTCTAACCATGTAGAGGT 59.561 38.462 0.00 0.00 42.34 3.85
2230 2280 6.205853 TGATGTTGGTTGTGTGTATTCTAACC 59.794 38.462 0.00 0.00 40.83 2.85
2240 2290 6.533012 TGTATTTTGTTGATGTTGGTTGTGTG 59.467 34.615 0.00 0.00 0.00 3.82
2246 2296 5.066634 TCGTGTGTATTTTGTTGATGTTGGT 59.933 36.000 0.00 0.00 0.00 3.67
2261 2311 3.998341 AGGCGTGTTTTATTCGTGTGTAT 59.002 39.130 0.00 0.00 0.00 2.29
2262 2312 3.184783 CAGGCGTGTTTTATTCGTGTGTA 59.815 43.478 0.00 0.00 0.00 2.90
2268 2318 2.323939 TTGCAGGCGTGTTTTATTCG 57.676 45.000 8.40 0.00 0.00 3.34
2291 2341 5.348164 AGTTTTGGTTATGTGTGACTTTGC 58.652 37.500 0.00 0.00 0.00 3.68
2296 2346 5.183140 AGGCATAGTTTTGGTTATGTGTGAC 59.817 40.000 0.00 0.00 31.45 3.67
2299 2349 7.768807 TTTAGGCATAGTTTTGGTTATGTGT 57.231 32.000 0.00 0.00 31.45 3.72
2300 2350 7.272515 CGTTTTAGGCATAGTTTTGGTTATGTG 59.727 37.037 0.00 0.00 31.45 3.21
2302 2352 7.531716 TCGTTTTAGGCATAGTTTTGGTTATG 58.468 34.615 0.00 0.00 0.00 1.90
2305 2355 5.048294 CCTCGTTTTAGGCATAGTTTTGGTT 60.048 40.000 0.00 0.00 0.00 3.67
2324 2374 2.973406 AGGTCCTCTTCTTTTTCCTCGT 59.027 45.455 0.00 0.00 0.00 4.18
2334 2384 1.754226 GATCGCTTGAGGTCCTCTTCT 59.246 52.381 19.82 0.00 0.00 2.85
2336 2386 1.561643 TGATCGCTTGAGGTCCTCTT 58.438 50.000 19.82 0.00 0.00 2.85
2338 2388 1.066858 TGTTGATCGCTTGAGGTCCTC 60.067 52.381 12.40 12.40 0.00 3.71
2340 2390 1.808411 TTGTTGATCGCTTGAGGTCC 58.192 50.000 0.00 0.00 0.00 4.46
2350 2401 7.747888 TGTAGTTTGTGGATTATTGTTGATCG 58.252 34.615 0.00 0.00 0.00 3.69
2361 2412 5.420739 AGGTTGTTGTTGTAGTTTGTGGATT 59.579 36.000 0.00 0.00 0.00 3.01
2464 2515 1.298157 CGGTGAAGGCGATGCTTGAA 61.298 55.000 0.00 0.00 0.00 2.69
2465 2516 1.741401 CGGTGAAGGCGATGCTTGA 60.741 57.895 0.00 0.00 0.00 3.02
2466 2517 2.753966 CCGGTGAAGGCGATGCTTG 61.754 63.158 0.00 0.00 0.00 4.01
2467 2518 2.257409 ATCCGGTGAAGGCGATGCTT 62.257 55.000 0.00 0.00 0.00 3.91
2468 2519 2.650813 GATCCGGTGAAGGCGATGCT 62.651 60.000 0.00 0.00 0.00 3.79
2469 2520 2.203070 ATCCGGTGAAGGCGATGC 60.203 61.111 0.00 0.00 0.00 3.91
2470 2521 0.877649 CAGATCCGGTGAAGGCGATG 60.878 60.000 0.00 0.00 0.00 3.84
2471 2522 1.043116 TCAGATCCGGTGAAGGCGAT 61.043 55.000 0.00 0.00 0.00 4.58
2472 2523 1.680989 TCAGATCCGGTGAAGGCGA 60.681 57.895 0.00 0.00 0.00 5.54
2473 2524 1.519455 GTCAGATCCGGTGAAGGCG 60.519 63.158 0.00 0.00 0.00 5.52
2474 2525 1.153349 GGTCAGATCCGGTGAAGGC 60.153 63.158 0.00 0.00 0.00 4.35
2475 2526 0.108138 GTGGTCAGATCCGGTGAAGG 60.108 60.000 0.00 0.00 0.00 3.46
2476 2527 0.108138 GGTGGTCAGATCCGGTGAAG 60.108 60.000 0.00 0.00 0.00 3.02
2481 2532 0.613260 TCTTTGGTGGTCAGATCCGG 59.387 55.000 0.00 0.00 0.00 5.14
2492 2543 7.878127 TGAAAACCTAGAATCTAGTCTTTGGTG 59.122 37.037 15.40 1.26 35.09 4.17
2494 2545 8.722394 GTTGAAAACCTAGAATCTAGTCTTTGG 58.278 37.037 15.40 3.36 42.21 3.28
2519 2570 4.077300 TGCTCAGACTTGTTCTTCATGT 57.923 40.909 0.00 0.00 37.18 3.21
2589 2641 2.375766 GCCTCGACTCAGTTGCACG 61.376 63.158 0.00 0.00 0.00 5.34
2601 2653 2.765250 GAACCAAGCACGAGCCTCGA 62.765 60.000 22.80 0.00 43.74 4.04
2603 2655 2.383527 CGAACCAAGCACGAGCCTC 61.384 63.158 0.00 0.00 43.56 4.70
2607 2659 1.082756 GCAACGAACCAAGCACGAG 60.083 57.895 0.00 0.00 0.00 4.18
2608 2660 2.539338 GGCAACGAACCAAGCACGA 61.539 57.895 0.00 0.00 0.00 4.35
2632 2684 3.782443 GGGTCTTCGCGGGGATGT 61.782 66.667 6.13 0.00 0.00 3.06
2656 2708 4.155733 CGGGGCGATACACTGGCA 62.156 66.667 0.00 0.00 0.00 4.92
2659 2711 2.890474 GTGCGGGGCGATACACTG 60.890 66.667 0.00 0.00 0.00 3.66
2781 2834 1.339631 TGGGGACGAAATGTAGCCAAG 60.340 52.381 0.00 0.00 0.00 3.61
2841 2894 2.571653 TCGACATGGAGTTTCTTGGGAT 59.428 45.455 0.00 0.00 0.00 3.85
2845 2899 4.692625 ACAATCTCGACATGGAGTTTCTTG 59.307 41.667 0.00 2.37 35.52 3.02
2848 2902 3.997021 ACACAATCTCGACATGGAGTTTC 59.003 43.478 0.00 0.00 35.52 2.78
2875 2931 6.020678 GGAATGCAAGCAACGAAATACAATAC 60.021 38.462 0.00 0.00 0.00 1.89
2884 2940 2.879002 TTTGGAATGCAAGCAACGAA 57.121 40.000 0.00 0.00 0.00 3.85
2938 2994 2.494073 AGTTCTTCATCCGTCTGAGGAC 59.506 50.000 0.00 0.00 44.07 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.