>input_sequence_64055
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-ATGGCCGGCTCCGGCGCCAGCGACGACGAGGTCGTCCTGGAGATCGAACACTGCATCCGCGTATTCAAGAGCGGCCGCG
TGGAGCGCTACTTCGGCTCCGACCCCGTCCCTGCCTCTACCGACGCCGGCACCGGCGTCGCCTCGAAAGACCGTACAATC
TCCCCCGACATAGCCGTCCGCCTCTACCTCCCGCCCCTCGCCACAGAGGACGGCGACGGGAAGAAGCTTCCCATCCTCGT
CTACTTCCATGGCGGCGGTTTCGTCCTCCACACCGCCTTCAACGCCGTCTTCCACGCGTACCTCTCCTCCCTCGCCGCGC
GCGCCCGGGCCATCGTCGTCTCCGTCGACTACCGCCTCGCGCCCGAGCACCCCCTCCCCGCTGCCTACGATGACTCCTGG
CAAGCCCTACGCTGGGTGGCGTCCCACGCCCCCGGCGGTGCCGGCGAGGAGCCCTGGCTCACCGACCACGCCGACTTCTC
CCGCCTGTCGCTTGGCGGCGAGAGCGCGGGCGCCAACATCGCGCACCACCTGGCGATGCGCGCCGGCGCCGAGGGCCTGC
CCCACGGCGCGGCGATCAGCGGCGGCATCGTCCTGGTTCACCCCTACTTCTTGGGCCACGGCAAGGTGCCCTCCGAGGAC
AGCGACCCCGTGATGGCCGAGAACGTGGTAAAGATGTGGCGCGTGGTGTGCCCCCAGACCACGGGCGTCGACGACCCGTG
GATCAACCCGCTGGCCGCCGGCGCGCCGACGATGCGCGTGCTGGCGTGCCGGCGCGTGCTCATGTGCCTCGCGGAGACGG
ACGTGGTCCGCGACCGCGGGCGCGCGTACTGCGGTGGGCTCAAGGCGAGCGGGTGGGCGGGGGAGGTGGAGCTGCTCGAG
GTGGCCGGGCAGGGACACTGCTTCCATCTCGTCGACTTCACCTGCGACGATGCCGTCAGGCAGGACGACGCCATTGCCAG
GTTCCTGAATCTGTAG----------------------------------------------------------------
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>chr5B_1_TraesCS5B01G241000
TCACTGATCCATTGCCTACGAGTTTTTCATATATTGTGCTTCGCTTATTTACTTTTTCGTTGCTACTATTACAATCACTA
CAAAACACCAAAAATATTGCTATTACTATCTTTACCTTTTACCATTGTTACCATTACTATCATACTACTTTGCTACTAAA
TACTTTGCTGCAGATATTAAGTTATCCAGGTGTGGTTGAATTGACAACTCAACTGCTAATATTCAAGAATATTCTTTGGC
TCCCCTTGTGTCGAATCAATAAATTTGGGTTGAATACTCTACCCTCGAAAGCTGTTGCGATCCCCTACACTTGTGGGTCA
TCAGCCATTCATTTTCCTCCAGTATTCACCT-CTAGATTTGCCTTCGAATGTCTTAACCCTTTAAAGGTTCCTTTGGTAT
GCAGAATTCTAAAATTTGAGGAACAGAAGAACATGGAAATATGATATGAATGCACGTGCAAAACAGACAAATTGT-AAAC
ACACGAGTTAAGTCAAGTAGGTCTTTGGTTCACAGTTATTG-AAAAACACATGAATCTAAATAAACATGGTCAAATTAAA
GTCAAACCACATGAAAATGTATAGTTAGGATGTTATCATGCAATCAAGGTTCTTAGTCTCGTTCTTCTTCGTGCATAAGA
ATTTGAAAAG-AGCTCAAAGTGGGTGTTAGAATCCCTCTGCTTTTCCTTTGAAAGTAGGTTCAAAGGAAAATTGGGTAAA
GGAAAAATAAAGAAAAATTTCCAATGAACCAAACACATGAATAACAACATCATAGAGAAGAAACTTCACTTTCACTATGA
ACCAAAGGAGCCCTAAAGTCAAAATCAACTCCACAAAAATTCAAGAAAGGAAATAA--GTTGTTCAGATCCAACTACTAC
ACATTAACGTGGCCCAAGCCCAGCCATAGGAAGTCAAGTTGGT-----------------------------------GA
ACCACTCATCCGCCAATAACAACTTGGGCTTCAACAAACAATCCACCGGCGGCACCGCGTAACCAGAGCCCCCGTCCACC
CATGGCCGGCTCCGGCGCCAGCGACGACGAGGTCGTCCTGGAGATCGAACACTGCATCCGCGTATTCAAGAGCGGCCGCG
TGGAGCGCTACTTCGGCTCCGACCCCGTCCCTGCCTCTACCGACGCCGGCACCGGCGTCGCCTCGAAAGACCGTACAATC
TCCCCCGACATAGCCGTCCGCCTCTACCTCCCGCCCCTCGCCACAGAGGACGGCGACGGGAAGAAGCTTCCCATCCTCGT
CTACTTCCATGGCGGCGGTTTCGTCCTCCACACCGCCTTCAACGCCGTCTTCCACGCGTACCTCTCCTCCCTCGCCGCGC
GCGCCCGGGCCATCGTCGTCTCCGTCGACTACCGCCTCGCGCCCGAGCACCCCCTCCCCGCTGCCTACGATGACTCCTGG
CAAGCCCTACGCTGGGTGGCGTCCCACGCCCCCGGCGGTGCCGGCGAGGAGCCCTGGCTCACCGACCACGCCGACTTCTC
CCGCCTGTCGCTTGGCGGCGAGAGCGCGGGCGCCAACATCGCGCACCACCTGGCGATGCGCGCCGGCGCCGAGGGCCTGC
CCCACGGCGCGGCGATCAGCGGCGGCATCGTCCTGGTTCACCCCTACTTCTTGGGCCACGGCAAGGTGCCCTCCGAGGAC
AGCGACCCCGTGATGGCCGAGAACGTGGTAAAGATGTGGCGCGTGGTGTGCCCCCAGACCACGGGCGTCGACGACCCGTG
GATCAACCCGCTGGCCGCCGGCGCGCCGACGATGCGCGTGCTGGCGTGCCGGCGCGTGCTCATGTGCCTCGCGGAGACGG
ACGTGGTCCGCGACCGCGGGCGCGCGTACTGCGGTGGGCTCAAGGCGAGCGGGTGGGCGGGGGAGGTGGAGCTGCTCGAG
GTGGCCGGGCAGGGACACTGCTTCCATCTCGTCGACTTCACCTGCGACGATGCCGTCAGGCAGGACGACGCCATTGCCAG
GTTCCTGAATCTGTAGAACAATATCTCGCGGACAAGGGCATTTTCAGACCGCATGTTGCACCTGCGTCTGAACTTCTGTA
TGTTTGTTGTTGATGCATCT-GGGAAGAAGATTGATCGGTCACGGCTAGGTTCGTGCCCATTGTGCCGAATTGGATTTGA
TGATATATATACAGCATTGCCTGGTTACTTGTCCTCTTGGGATTTTATTGACTAAAAAAA--TGAAGCATCAAGCATCTA
GCA---CAAACATAACAATCACAACCAA--CCTCTACATGGTTAGAATACACACAACCAACATCAACAAAATACACACGA
ATAAAACACGCCTGCAAATAGCAAAGTCACACATAACCAAAACTATGCCTAAAACGAGGAAAAAGAAGAG-GACCTCAAG
CGATCAACAATAATCCACAAACTACAACAACAACCTTGTTCACACCAATCATATATTGACATCATAAGAACGAAAAAGTT
CTTCAACAACAATGCCTTCAGAAAGAAAGCGACGTTCAAGCATCGCCTTCACCGGATCTGACCACCAAAGACTAGATTCT
AGGTTTTCAACATGAAGAACAAGTCTGAGCATATCCGAGCAATGCCTTTAACATGGTAACAATGT-AAAAACAATGTCCT
CGTGCAACTGAGTCGAGGCTCGTGCTTGGTTCGTTGCCTTACAACATCCCCGCGAAGACCCACTGTCTGCCAGTGTATCG
CCCCGCACTGCCCCGACGGGGCCTCTGACGAGCCGCCTGCCGCC-CCGCACCGGCCCCCACAGCTCGGTCAAGCCGCCCA
CCAACCGCTGCTGCCGCTGCCGCTCAGATGCGCCTTGGCTACATTTCGTCCCCAAGGTACTCAGACAAATTTATTCACCC
AAATTTTTTGTTTAT-CCCAAGAAACTCCATGTCGAGATTG--TGTGCTCGTATTGTATTTCGTTGCTTGCATTCCAAAT
GAACTCTCATGTTGAGTAGTTTTTCAAAAACTCGTCCTCAGACGGATGAAGAACTTGAAAAGGTGATTGC
>chr5D_308
CACTTATGAATCAT------------------------------------------------------------------
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--AGTCGTTCATTTTCCTCCAATATTCACCTACTAGATTTGCCTTCGAATGTCTTAGCCCTTTAAGGGCTCATTTGGTAT
GCAAAATTCAAAAATTTGAGGAATAGAAAAACATTGAAATATGATATGAATGCACGTGCAAAACAGACGAATCGT-AAAC
ACATGAATTATGTCAAGTTGGCCTT-GGTTCACAGGAATTGAAAAAACACATGAATCCAAATAAACATGATCAAATTAAA
GTCAAACCACATGAAAAAAT-----------------ATGCCATTAAGGTTCTTAGTCTTGTTCTTC---GTGTATAAGA
ATTTAAAAAG-AGCTCAAAATGGATGTTAGAATCCCTTTGCTTTTCCTTTGAAAGTAGGTTCAAAGGAAAATG-------
---------AAGAAAAATTTCCTTTGAACCAAACACATGAATAGTAGCATCATAGAGAAGAAACTTCACTTTCACTATGA
GCCAAAGGAGCCCTAAAGTCAAAATCAACTCCACAAAAATTCAAGAAGGCGAGAAAAGGTTGTTCGGATCCAACTACTAC
AC--TAACGTGGCCCAAGCCCAACCATAGGAAGTCAAGTTTTTTTTTTTTTTTTTGAGACATGGGAAGTCAAGTTGCAGA
ACCACTCGTCCGCCAA---CAACTTGGGCTTCAACAAACAATCCACCGGCGGCACCGCGGACACAGAGCTCCCGTCGACC
CATGGCCGGCTCCGGCGCCAGCGACGACGAGGTCGCCCTGGAGATCGAACACTGCATCCGAGTATTCAAGAGCGGCCGCG
TGGAGCGCTACTTCGGGTCCGACCCCGTCCCGGCCTGTACCGACGCCGGCACCGGCGTCGCCTCGAAAGACCGCACAATC
TCCCCCGACGTGGCCGTCCGCCTCTACCTCCCGCCCCTCGCCACGGAGGGCGGCGACGAAAAGAAGCTACCCGTCCTCGT
CTACTTCCACGGCGGCGGTTTCGTCCTCCACACCGCCTTCAACGCCGTCTTCCACGCGTACCTCACCTCCCTCGCCGCGC
GCGCCCGGGCCATCGTCGTCTCCGTCGACTACCGCCTCGCGCCCGAGCACCCTCTCCCCGCCGCCTACGATGACTCGTGG
CGGGCGCTGCGCTGGGTGGCGTCCCACGCCCCCGGCGGCGCCGGCGAGGAGCCCTGGCTCACCGACCACGGCGACTTCTC
CCGCCTGTCGCTCGGCGGCGAGAGCGCGGGCGCCAACATCGCGCACCACCTGGCGATGCGCGCCGGCGCCGAGGGCCTGC
CCCACGGCGCGACGATCAGCAGCGGCATCGTGCTGGTCCACCCCTACTTCTTGGGCCACGGCAAGGTGCCCTCCGAGGAC
AGCGACCCCGTGATGGCCGAGAACGTGGTGAAGATGTGGCGCGTGGTGTGCCCCCAGACCACGGGCGTCGACGACCCGTG
GATCAACCCGCTGGCCGCCGGCGCGCCGACGATGCGCGGGTTGGCGTGCCGGCGCGTGCTCATGTGCCTCGCGGAGACGG
ACGTGGTCCGCGACCGCGGCCGCGCGTACTGCGATGGGCTCAAGGCGAGCGGGTGGGCGGGGCAGGTGGACCTGCTTGAG
GTGGCCGGGCAGGGCCACTGCTTCCATCTCGGCAACTTCACCTGCGACGATGCCGTCAGGCAGGATGACGCCATTGCCAG
GTTCCTGAATCTGTAGAACAATATCTCGCGGACACGGGCATTTTCAGACCGCATGTTGCACCTGCGTCTGAACTTCTGTA
TTTTTGTTGTTGATGCATTTGGGGAAGAAGATTGATCGGTCACGGCTAGGTTCGTGCCCGTTGTGCCGAATTGGATTTGA
TGATATA----CAGCATTGCCT-GTTACTTGTCCTCTT-GGATTTTATTGACTAAAAAAAAATGAAGCATCAAACATATA
GCAGTACAAACATAACAAGCACACAGCCGGCCTCTACATTGTTAGAATATACACAGCCAACATCAACAAAC-ACACATGA
ATAAAACACGCCGGCAAATAACAAAATCGTATATGACCAAAACTATGCCTAAAGCGAGGAAAAGGGAAAAAGACCTCAAG
GGATCAACAATGATCCACAAACTACATCAACAACCTTGTTCACACCAATCATATATTGACCTTATAAGAACGAAAAAGTT
CTTCAACAACAACGCCTTCAGAAAGAAAGTGACGCCT----------TTCAGCGGATCTGACTATCAAAGACTAGATTCT
AGGTTTTCATCATGAAGAACAAGTCTGAGCATATCCGAGCAATGCCTTTAACATGGTAACAATGTAAAAAACAATGTCCT
TGTGCAACTGAGGCAAGGTCCGTGCTTGGTCTGTTGCCTTACAGCATCCCCGCGAAGACCTACTGTCAGCTAGTGTATCG
CCCCGCACTGCCCCGACGCAGCCTCCGACGAGCCGCCTGCCGCTTCCGCACCAGCCCCCACAGCTCGGTCAAGCCGCCCA
CGAACC------GCCGCTGCCGCTCAGATGCGCATTGGCTACATTTCGTCCCCAAGGTACTCAGACAAATTTATTCACCC
AAATTTTTTGTTTGTCCCAAAAAAACTCCCTGTGGAGATTGTGTGTGCTCATATTGTATGTCGTTGCTTGCATTCCAAAT
GAACTCTCATGTTGAGTAGTTTTTCAAAAACTCATCCTCAGACGGATGAAGAACTTGAAAAGATGATTG-
>chr5A_308
CACTTATGAATCAT------------------------------------------------------------------
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--AGCCATTCATTTTCCTCCAATATTCACCTACTAGATTTTCCTTCAAATGCCTTAACAGTTTAAGGGCTCATTTGGTAT
GCAGGATCCTAAAAATTGAGGAATAGAAAAACATGAAAAAATGATATGAATGGACGGGCAAAACAAACAAATCGTAAAAC
ACATGAATTATGTTAAGTAGGTCTTTGGTTCACAGGAATTG-AAAAACACATGAATCAAAATAAATATGGTCAAATTAAA
GTGAAACCACCTGAATCCAAGGTCTTTA--------------------GTTCTTAGTCTCTTTCTTC---GTGCATAAGA
ATTTGAAAAGGAGCTCAACATGGATGTTAGAATTCCTCTGCCTTTCATTTGAAAGT-GGTTCAAAGGAAAATGGGGTAAA
G-AAAAATGAAGAGAAAAATCGTTTGAACAAAACACATGAATAGTAGCATCATAGAGAAGAAACTTCACTTTCACTATGA
ACCAAAGGAGCGCTAAAGTCAAAGTCAACTCCACAAAAATTCAAGAAAGGAAGAAAAAGTTGTTGAGATCCAACTACTAC
ACATTAACGTGGCCCAAGCCCAACCATAGGAAGTCAAGTTGCT-----------------------------------GA
ACCACTCATCCGCCAA---CAACTTGGGCTTCAACAAACAATCCACCGGCGGCACCGCGGATAGAGAGCTCCCGCCGACC
CATGGCAGGCTCCGGCGCCAGCGACGACGAGGTCGTCCTGGAGATCGAGCACTGCATCCGCGTATTCAAGAGCGGCCGCG
TGGAGCGCTACTTCGGCTCCGACCCCGTCCCGGCCTCTACCGACGCCGGCACCGGCGTCGCCTCGAAAGACCGCACAATC
TCCCCCGACGTGGCCGTCCGCCTCTACCTCCCGCCCCTCGCCACGGAGGGCGTCGATGGGAAGAAGCTACCCGTCCTCGT
CTACTTCCACGGCGGCGGTTTCGTCCTCCACACCGCCTTCAACGCCGTCTTCCACGCGTACCTCTCCTCCCTCGCCGCGC
GCGCCCGGGCCATCGTCGTCTCCGTCGACTACCGCCTCGCGCCCGAGCACCCCCTCCCCGCCGCCTACGACGACTCCTGG
CAAGCCCTACGCTGGGTGGCGTCCCACGCCCCCGGCGGCGCCGGCGAGGAGCCCTGGCTCGCCGACCACGGCGACTTCTC
CCGCCTGTCCCTCGGCGGCGAGAGCGCGGGCGCCAACATCGCGCACCACCTGGCGATGCGCGCCGGCGCCGAGGGCCTGC
CCCGCGGCGCGACCATCAGCGGCGGCATCGTGCTGGTCCACCCCTACTTCCTGGGCCACGGCAAGGTGCCCTCCGAGGAC
AGCGACCCCGTGATGGCCGAGAACGTGGTGAAGATGTGGCGCGTGGTGTGCCCCCAGACCACGGGCGTCGACGACCCGTG
GATCAACCCGCTGGCCGCCGGCGCGCCGACGATGCGCGGGCTGGCGTGCCGGCGCGCGCTCGTGTGCCTCGCGGAGACGG
ACGTGGTCCGCGACCGCGGCCGCGCGTACTGCGATGGGCTCAAGGCGAGCGGGTGGGCTGGGGAGGTGGAGCTGCTCGAG
GTGGCCGGGCAGGGCCACTGCTTCCATCTCGTCGACTTCACCTGCGACGATGCCGTCAGGCAGGACGACGCCATTGCCAG
GTTCCTGAATCTGTAGAACAATATCTCGCGGACACGGGCATTTTCAGACCGCATGTT--------GTCTGAACTTGTGTA
TTTTTGTTGTTGATGCATCTGGGGAAGAAGATTGATCG------------------------------------------
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>SNPs
SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS-------------------S-------------------------------------------S--S--S--------
-----------------------S----S-------------------------------------------S-------
---S--S---S------------------------SS--------------------S----------------------
-----------------SS-SSSS--SSSSSSSSSSS----S--S----------------------SSS----------
-------------------S---S------------------------------------------------S-------
-S------S-------------SS-------------------SS-S---------------------------------
----------------------------------------------------SS--------------------------
----------------------S------------------S--------------------------------------
----------------SSS----------------------------------------S-SS------S------S---
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-------------------------------S-----------------------------------------S------
---------S-S--------------------------------S----S------------------S---S-------
---------S----------------------------------------------------------------------
-------------------------------------------------------------S------------------
--------------------------------------S-------------------------------S---------
------------S-------------------------------------------------------------------
-----------S-------------------S-----S------------------------------------------
-----------------------------S--------------------------------------------------
--------------------------------------S-----------------------------------------
-------------------S-------------S----------------------------------------------
--------------S-----------------------------------------------------------------
----------------------------------S---------------------------------------------
-S---------------------------------------------------------S--------------------
-------SSSS-----------S---------------S----------------------------------S---S--
------------------S----SSSSS-----------S---------S-----S--------------SS-----S--
------------S-------S----S--SS-S--S------------------S---------S-S-S-S----------
S----------S--------------S---------------------------------S-S-----------------
------------S----------------S----SSSSSSSSSSSSS----S----------S-S---------------
---------S----------------------------------------------------------------------
S-----------S-S---SS----------SS-----------S----------------S------S--S---------
------------------SS-----S-----------------S--------S---------------------------
-S----SSSSSS---------------------S----------------------------------------------
-------------S----S--S-------S---S----------------S--------S--------------------
---------------------------------S----------------------------S------S
>forward_258
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------------------------------------------------------------------------------GC
TCCCCTTGTGTCGAATCA--------------------------------------------------------------
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>reverse_1935
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--------------ACACTGCTTCCATCTCGTCG----------------------------------------------
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>forward_320
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------------------------------------------------------------TCCCCTACACTTGTGGGTCA
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>reverse_2035
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----------------------------------AGGGCATTTTCAGACCGCAT--------------------------
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