Multiple sequence alignment - TraesCS5B01G235400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G235400 chr5B 100.000 3274 0 0 1 3274 415671552 415668279 0.000000e+00 6047.0
1 TraesCS5B01G235400 chr5B 73.786 618 116 38 1355 1952 419947910 419948501 5.540000e-48 202.0
2 TraesCS5B01G235400 chr5B 89.474 95 8 2 1439 1532 421166030 421165937 5.740000e-23 119.0
3 TraesCS5B01G235400 chr5B 83.908 87 10 4 627 712 631804562 631804479 2.710000e-11 80.5
4 TraesCS5B01G235400 chr5B 82.143 84 15 0 1465 1548 251917877 251917960 4.530000e-09 73.1
5 TraesCS5B01G235400 chr5D 91.640 2225 112 28 202 2384 352699503 352697311 0.000000e+00 3011.0
6 TraesCS5B01G235400 chr5D 80.946 782 111 18 2527 3271 360144768 360143988 4.710000e-163 584.0
7 TraesCS5B01G235400 chr5D 79.371 286 51 6 1355 1633 355076908 355077192 9.270000e-46 195.0
8 TraesCS5B01G235400 chr5D 75.719 313 56 9 1355 1648 75354250 75353939 4.410000e-29 139.0
9 TraesCS5B01G235400 chr5D 83.200 125 19 2 1439 1562 356194472 356194349 2.670000e-21 113.0
10 TraesCS5B01G235400 chr5D 100.000 30 0 0 174 203 352699573 352699544 4.560000e-04 56.5
11 TraesCS5B01G235400 chr2D 81.586 782 104 20 2529 3271 252131881 252131101 7.770000e-171 610.0
12 TraesCS5B01G235400 chr2D 100.000 36 0 0 2485 2520 442000669 442000704 2.110000e-07 67.6
13 TraesCS5B01G235400 chr2D 88.889 45 5 0 623 667 34239306 34239350 4.560000e-04 56.5
14 TraesCS5B01G235400 chr7D 81.978 627 81 19 2673 3271 132206849 132207471 1.360000e-138 503.0
15 TraesCS5B01G235400 chr4D 80.697 689 91 22 2613 3274 319987571 319986898 6.310000e-137 497.0
16 TraesCS5B01G235400 chr4D 82.536 418 49 10 2527 2920 374160294 374159877 2.420000e-91 346.0
17 TraesCS5B01G235400 chr4D 97.436 39 1 0 2482 2520 37502861 37502899 2.110000e-07 67.6
18 TraesCS5B01G235400 chr4D 100.000 28 0 0 629 656 503448131 503448158 6.000000e-03 52.8
19 TraesCS5B01G235400 chr7B 79.412 748 108 30 2561 3271 110882949 110883687 1.370000e-133 486.0
20 TraesCS5B01G235400 chr6B 81.588 554 78 9 2740 3274 384649052 384648504 1.390000e-118 436.0
21 TraesCS5B01G235400 chr6B 77.273 132 23 7 618 746 42233853 42233726 1.630000e-08 71.3
22 TraesCS5B01G235400 chr6D 83.478 460 61 2 2827 3271 367987729 367988188 6.540000e-112 414.0
23 TraesCS5B01G235400 chr6D 82.143 112 17 3 629 739 56906013 56905904 3.480000e-15 93.5
24 TraesCS5B01G235400 chr6D 100.000 36 0 0 2485 2520 279406563 279406528 2.110000e-07 67.6
25 TraesCS5B01G235400 chr6D 100.000 36 0 0 2485 2520 465222426 465222461 2.110000e-07 67.6
26 TraesCS5B01G235400 chr3D 90.175 285 26 2 2988 3271 385641097 385641380 1.430000e-98 370.0
27 TraesCS5B01G235400 chr3D 79.699 133 20 7 631 761 461952617 461952744 4.500000e-14 89.8
28 TraesCS5B01G235400 chr3D 100.000 36 0 0 2485 2520 415957457 415957492 2.110000e-07 67.6
29 TraesCS5B01G235400 chr5A 87.421 318 40 0 2954 3271 461075652 461075335 1.860000e-97 366.0
30 TraesCS5B01G235400 chr5A 90.498 221 14 3 852 1071 453345578 453345364 5.350000e-73 285.0
31 TraesCS5B01G235400 chr5A 79.195 298 56 6 1352 1646 457511793 457512087 5.540000e-48 202.0
32 TraesCS5B01G235400 chr5A 76.534 277 46 9 532 798 355465339 355465606 2.050000e-27 134.0
33 TraesCS5B01G235400 chr5A 75.080 313 58 11 1355 1648 70482813 70482502 9.540000e-26 128.0
34 TraesCS5B01G235400 chr5A 90.526 95 7 2 1439 1532 457891349 457891256 1.230000e-24 124.0
35 TraesCS5B01G235400 chr7A 83.135 421 43 17 2527 2920 451983666 451983247 3.110000e-95 359.0
36 TraesCS5B01G235400 chr3A 83.130 409 51 9 2527 2920 730675273 730674868 1.120000e-94 357.0
37 TraesCS5B01G235400 chr3A 75.833 120 27 2 629 747 703915830 703915948 3.530000e-05 60.2
38 TraesCS5B01G235400 chr6A 82.775 418 46 17 2527 2920 593276532 593276947 1.870000e-92 350.0
39 TraesCS5B01G235400 chr6A 82.536 418 48 14 2527 2920 46780291 46780707 8.700000e-91 344.0
40 TraesCS5B01G235400 chr6A 82.009 428 50 15 2519 2920 616271790 616272216 4.050000e-89 339.0
41 TraesCS5B01G235400 chr6A 81.882 425 50 14 2519 2920 435820328 435820748 1.880000e-87 333.0
42 TraesCS5B01G235400 chr6A 100.000 36 0 0 2485 2520 606389752 606389787 2.110000e-07 67.6
43 TraesCS5B01G235400 chr3B 82.734 417 47 18 2527 2920 821604804 821604390 6.720000e-92 348.0
44 TraesCS5B01G235400 chr1A 82.057 418 51 15 2527 2920 8297470 8297887 5.230000e-88 335.0
45 TraesCS5B01G235400 chr1A 100.000 36 0 0 2485 2520 305972426 305972391 2.110000e-07 67.6
46 TraesCS5B01G235400 chr1A 83.607 61 9 1 629 688 96487482 96487542 4.560000e-04 56.5
47 TraesCS5B01G235400 chr1D 78.616 318 38 13 2570 2860 41916347 41916661 2.010000e-42 183.0
48 TraesCS5B01G235400 chr1D 82.500 120 17 4 629 746 78966977 78966860 5.780000e-18 102.0
49 TraesCS5B01G235400 chr1B 85.088 114 13 4 629 740 340804629 340804518 2.670000e-21 113.0
50 TraesCS5B01G235400 chr1B 76.860 121 18 10 629 744 270323352 270323467 3.530000e-05 60.2
51 TraesCS5B01G235400 chr2B 81.967 122 16 6 629 747 45740786 45740904 7.480000e-17 99.0
52 TraesCS5B01G235400 chr2B 88.136 59 7 0 2462 2520 103100934 103100992 1.630000e-08 71.3
53 TraesCS5B01G235400 chr4A 81.667 120 19 3 629 747 595044808 595044925 2.690000e-16 97.1
54 TraesCS5B01G235400 chr4A 83.908 87 14 0 1443 1529 84897289 84897203 2.090000e-12 84.2
55 TraesCS5B01G235400 chr4A 77.477 111 17 8 629 736 606347966 606347861 3.530000e-05 60.2
56 TraesCS5B01G235400 chr4B 79.381 97 16 4 623 717 24692897 24692803 7.580000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G235400 chr5B 415668279 415671552 3273 True 6047.00 6047 100.000 1 3274 1 chr5B.!!$R1 3273
1 TraesCS5B01G235400 chr5B 419947910 419948501 591 False 202.00 202 73.786 1355 1952 1 chr5B.!!$F2 597
2 TraesCS5B01G235400 chr5D 352697311 352699573 2262 True 1533.75 3011 95.820 174 2384 2 chr5D.!!$R4 2210
3 TraesCS5B01G235400 chr5D 360143988 360144768 780 True 584.00 584 80.946 2527 3271 1 chr5D.!!$R3 744
4 TraesCS5B01G235400 chr2D 252131101 252131881 780 True 610.00 610 81.586 2529 3271 1 chr2D.!!$R1 742
5 TraesCS5B01G235400 chr7D 132206849 132207471 622 False 503.00 503 81.978 2673 3271 1 chr7D.!!$F1 598
6 TraesCS5B01G235400 chr4D 319986898 319987571 673 True 497.00 497 80.697 2613 3274 1 chr4D.!!$R1 661
7 TraesCS5B01G235400 chr7B 110882949 110883687 738 False 486.00 486 79.412 2561 3271 1 chr7B.!!$F1 710
8 TraesCS5B01G235400 chr6B 384648504 384649052 548 True 436.00 436 81.588 2740 3274 1 chr6B.!!$R2 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 90 0.108089 TTCGATCGCAATTCCCCGAA 60.108 50.0 11.09 0.0 37.0 4.30 F
842 891 0.181350 GCTGTCTGGATAGTTGGGGG 59.819 60.0 0.00 0.0 0.0 5.40 F
2094 2164 0.108585 ATCGCCGGCCATTGATAACT 59.891 50.0 23.46 0.0 0.0 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1339 1403 1.080772 CTTCGTGACTGCGGCTGTA 60.081 57.895 12.66 0.0 0.0 2.74 R
2223 2293 0.105964 CTGTCACTGTCCCGGTTGAA 59.894 55.000 0.00 0.0 0.0 2.69 R
3119 3248 1.155424 TTGTGTGCCTCGTCGAAACC 61.155 55.000 0.00 0.0 0.0 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.647035 GTTTTCATAACTTCAATGAGACTTCG 57.353 34.615 0.00 0.00 34.93 3.79
26 27 6.408858 TTCATAACTTCAATGAGACTTCGC 57.591 37.500 0.00 0.00 34.93 4.70
27 28 4.870426 TCATAACTTCAATGAGACTTCGCC 59.130 41.667 0.00 0.00 0.00 5.54
28 29 2.839486 ACTTCAATGAGACTTCGCCA 57.161 45.000 0.00 0.00 0.00 5.69
29 30 3.126001 ACTTCAATGAGACTTCGCCAA 57.874 42.857 0.00 0.00 0.00 4.52
30 31 3.476552 ACTTCAATGAGACTTCGCCAAA 58.523 40.909 0.00 0.00 0.00 3.28
31 32 3.882888 ACTTCAATGAGACTTCGCCAAAA 59.117 39.130 0.00 0.00 0.00 2.44
32 33 4.338118 ACTTCAATGAGACTTCGCCAAAAA 59.662 37.500 0.00 0.00 0.00 1.94
33 34 4.223320 TCAATGAGACTTCGCCAAAAAC 57.777 40.909 0.00 0.00 0.00 2.43
34 35 3.629855 TCAATGAGACTTCGCCAAAAACA 59.370 39.130 0.00 0.00 0.00 2.83
35 36 4.278170 TCAATGAGACTTCGCCAAAAACAT 59.722 37.500 0.00 0.00 0.00 2.71
36 37 3.896648 TGAGACTTCGCCAAAAACATC 57.103 42.857 0.00 0.00 0.00 3.06
37 38 2.552315 TGAGACTTCGCCAAAAACATCC 59.448 45.455 0.00 0.00 0.00 3.51
38 39 2.552315 GAGACTTCGCCAAAAACATCCA 59.448 45.455 0.00 0.00 0.00 3.41
39 40 3.157087 AGACTTCGCCAAAAACATCCAT 58.843 40.909 0.00 0.00 0.00 3.41
40 41 3.191371 AGACTTCGCCAAAAACATCCATC 59.809 43.478 0.00 0.00 0.00 3.51
41 42 3.157087 ACTTCGCCAAAAACATCCATCT 58.843 40.909 0.00 0.00 0.00 2.90
42 43 3.191371 ACTTCGCCAAAAACATCCATCTC 59.809 43.478 0.00 0.00 0.00 2.75
43 44 3.071874 TCGCCAAAAACATCCATCTCT 57.928 42.857 0.00 0.00 0.00 3.10
44 45 3.420893 TCGCCAAAAACATCCATCTCTT 58.579 40.909 0.00 0.00 0.00 2.85
45 46 3.440173 TCGCCAAAAACATCCATCTCTTC 59.560 43.478 0.00 0.00 0.00 2.87
46 47 3.428045 CGCCAAAAACATCCATCTCTTCC 60.428 47.826 0.00 0.00 0.00 3.46
47 48 3.766051 GCCAAAAACATCCATCTCTTCCT 59.234 43.478 0.00 0.00 0.00 3.36
48 49 4.142293 GCCAAAAACATCCATCTCTTCCTC 60.142 45.833 0.00 0.00 0.00 3.71
49 50 5.012239 CCAAAAACATCCATCTCTTCCTCA 58.988 41.667 0.00 0.00 0.00 3.86
50 51 5.125097 CCAAAAACATCCATCTCTTCCTCAG 59.875 44.000 0.00 0.00 0.00 3.35
51 52 4.500499 AAACATCCATCTCTTCCTCAGG 57.500 45.455 0.00 0.00 0.00 3.86
52 53 3.411454 ACATCCATCTCTTCCTCAGGA 57.589 47.619 0.00 0.00 0.00 3.86
53 54 3.307506 ACATCCATCTCTTCCTCAGGAG 58.692 50.000 0.00 0.00 31.21 3.69
54 55 1.786937 TCCATCTCTTCCTCAGGAGC 58.213 55.000 0.00 0.00 31.21 4.70
55 56 0.758123 CCATCTCTTCCTCAGGAGCC 59.242 60.000 0.00 0.00 31.21 4.70
56 57 1.493861 CATCTCTTCCTCAGGAGCCA 58.506 55.000 0.00 0.00 31.21 4.75
57 58 2.048601 CATCTCTTCCTCAGGAGCCAT 58.951 52.381 0.00 0.00 31.21 4.40
58 59 2.260639 TCTCTTCCTCAGGAGCCATT 57.739 50.000 0.00 0.00 31.21 3.16
59 60 1.836166 TCTCTTCCTCAGGAGCCATTG 59.164 52.381 0.00 0.00 31.21 2.82
60 61 1.558756 CTCTTCCTCAGGAGCCATTGT 59.441 52.381 0.00 0.00 31.21 2.71
61 62 1.988107 TCTTCCTCAGGAGCCATTGTT 59.012 47.619 0.00 0.00 31.21 2.83
62 63 2.376518 TCTTCCTCAGGAGCCATTGTTT 59.623 45.455 0.00 0.00 31.21 2.83
63 64 2.978156 TCCTCAGGAGCCATTGTTTT 57.022 45.000 0.00 0.00 0.00 2.43
64 65 2.795329 TCCTCAGGAGCCATTGTTTTC 58.205 47.619 0.00 0.00 0.00 2.29
65 66 2.108075 TCCTCAGGAGCCATTGTTTTCA 59.892 45.455 0.00 0.00 0.00 2.69
66 67 3.094572 CCTCAGGAGCCATTGTTTTCAT 58.905 45.455 0.00 0.00 0.00 2.57
67 68 4.018506 TCCTCAGGAGCCATTGTTTTCATA 60.019 41.667 0.00 0.00 0.00 2.15
68 69 4.337555 CCTCAGGAGCCATTGTTTTCATAG 59.662 45.833 0.00 0.00 0.00 2.23
69 70 3.696051 TCAGGAGCCATTGTTTTCATAGC 59.304 43.478 0.00 0.00 0.00 2.97
70 71 3.698040 CAGGAGCCATTGTTTTCATAGCT 59.302 43.478 0.00 0.00 34.21 3.32
71 72 4.159135 CAGGAGCCATTGTTTTCATAGCTT 59.841 41.667 0.00 0.00 32.56 3.74
72 73 4.400567 AGGAGCCATTGTTTTCATAGCTTC 59.599 41.667 0.00 0.00 32.56 3.86
73 74 4.346129 GAGCCATTGTTTTCATAGCTTCG 58.654 43.478 0.00 0.00 32.56 3.79
74 75 4.009675 AGCCATTGTTTTCATAGCTTCGA 58.990 39.130 0.00 0.00 0.00 3.71
75 76 4.641989 AGCCATTGTTTTCATAGCTTCGAT 59.358 37.500 0.00 0.00 0.00 3.59
76 77 4.972440 GCCATTGTTTTCATAGCTTCGATC 59.028 41.667 0.00 0.00 0.00 3.69
77 78 5.200454 CCATTGTTTTCATAGCTTCGATCG 58.800 41.667 9.36 9.36 0.00 3.69
78 79 3.925688 TGTTTTCATAGCTTCGATCGC 57.074 42.857 11.09 0.00 0.00 4.58
79 80 3.258228 TGTTTTCATAGCTTCGATCGCA 58.742 40.909 11.09 0.00 0.00 5.10
80 81 3.682377 TGTTTTCATAGCTTCGATCGCAA 59.318 39.130 11.09 5.07 0.00 4.85
81 82 4.332543 TGTTTTCATAGCTTCGATCGCAAT 59.667 37.500 11.09 0.00 0.00 3.56
82 83 5.163764 TGTTTTCATAGCTTCGATCGCAATT 60.164 36.000 11.09 0.00 0.00 2.32
83 84 4.715520 TTCATAGCTTCGATCGCAATTC 57.284 40.909 11.09 0.00 0.00 2.17
84 85 3.059884 TCATAGCTTCGATCGCAATTCC 58.940 45.455 11.09 0.00 0.00 3.01
85 86 1.865865 TAGCTTCGATCGCAATTCCC 58.134 50.000 11.09 0.00 0.00 3.97
86 87 0.815615 AGCTTCGATCGCAATTCCCC 60.816 55.000 11.09 0.00 0.00 4.81
87 88 1.934463 CTTCGATCGCAATTCCCCG 59.066 57.895 11.09 0.00 0.00 5.73
88 89 0.529773 CTTCGATCGCAATTCCCCGA 60.530 55.000 11.09 0.00 37.91 5.14
89 90 0.108089 TTCGATCGCAATTCCCCGAA 60.108 50.000 11.09 0.00 37.00 4.30
90 91 0.108089 TCGATCGCAATTCCCCGAAA 60.108 50.000 11.09 0.00 37.00 3.46
91 92 0.730265 CGATCGCAATTCCCCGAAAA 59.270 50.000 0.26 0.00 37.00 2.29
92 93 1.531058 CGATCGCAATTCCCCGAAAAC 60.531 52.381 0.26 0.00 37.00 2.43
93 94 1.470890 GATCGCAATTCCCCGAAAACA 59.529 47.619 0.00 0.00 37.00 2.83
94 95 1.540267 TCGCAATTCCCCGAAAACAT 58.460 45.000 0.00 0.00 0.00 2.71
95 96 1.470890 TCGCAATTCCCCGAAAACATC 59.529 47.619 0.00 0.00 0.00 3.06
96 97 1.469079 CGCAATTCCCCGAAAACATCC 60.469 52.381 0.00 0.00 0.00 3.51
97 98 1.548269 GCAATTCCCCGAAAACATCCA 59.452 47.619 0.00 0.00 0.00 3.41
98 99 2.168313 GCAATTCCCCGAAAACATCCAT 59.832 45.455 0.00 0.00 0.00 3.41
99 100 3.737972 GCAATTCCCCGAAAACATCCATC 60.738 47.826 0.00 0.00 0.00 3.51
100 101 3.669939 ATTCCCCGAAAACATCCATCT 57.330 42.857 0.00 0.00 0.00 2.90
101 102 2.710096 TCCCCGAAAACATCCATCTC 57.290 50.000 0.00 0.00 0.00 2.75
102 103 1.912731 TCCCCGAAAACATCCATCTCA 59.087 47.619 0.00 0.00 0.00 3.27
103 104 2.509548 TCCCCGAAAACATCCATCTCAT 59.490 45.455 0.00 0.00 0.00 2.90
104 105 2.880890 CCCCGAAAACATCCATCTCATC 59.119 50.000 0.00 0.00 0.00 2.92
105 106 2.880890 CCCGAAAACATCCATCTCATCC 59.119 50.000 0.00 0.00 0.00 3.51
106 107 3.544684 CCGAAAACATCCATCTCATCCA 58.455 45.455 0.00 0.00 0.00 3.41
107 108 3.313526 CCGAAAACATCCATCTCATCCAC 59.686 47.826 0.00 0.00 0.00 4.02
108 109 3.940852 CGAAAACATCCATCTCATCCACA 59.059 43.478 0.00 0.00 0.00 4.17
109 110 4.577693 CGAAAACATCCATCTCATCCACAT 59.422 41.667 0.00 0.00 0.00 3.21
110 111 5.505159 CGAAAACATCCATCTCATCCACATG 60.505 44.000 0.00 0.00 0.00 3.21
111 112 2.860009 ACATCCATCTCATCCACATGC 58.140 47.619 0.00 0.00 0.00 4.06
112 113 2.160205 CATCCATCTCATCCACATGCC 58.840 52.381 0.00 0.00 0.00 4.40
113 114 0.475475 TCCATCTCATCCACATGCCC 59.525 55.000 0.00 0.00 0.00 5.36
114 115 0.184211 CCATCTCATCCACATGCCCA 59.816 55.000 0.00 0.00 0.00 5.36
115 116 1.203013 CCATCTCATCCACATGCCCAT 60.203 52.381 0.00 0.00 0.00 4.00
116 117 2.160205 CATCTCATCCACATGCCCATC 58.840 52.381 0.00 0.00 0.00 3.51
117 118 1.215140 TCTCATCCACATGCCCATCA 58.785 50.000 0.00 0.00 0.00 3.07
118 119 1.142262 TCTCATCCACATGCCCATCAG 59.858 52.381 0.00 0.00 0.00 2.90
119 120 0.921166 TCATCCACATGCCCATCAGT 59.079 50.000 0.00 0.00 0.00 3.41
120 121 1.285667 TCATCCACATGCCCATCAGTT 59.714 47.619 0.00 0.00 0.00 3.16
121 122 2.104967 CATCCACATGCCCATCAGTTT 58.895 47.619 0.00 0.00 0.00 2.66
122 123 1.838112 TCCACATGCCCATCAGTTTC 58.162 50.000 0.00 0.00 0.00 2.78
123 124 0.452987 CCACATGCCCATCAGTTTCG 59.547 55.000 0.00 0.00 0.00 3.46
124 125 0.452987 CACATGCCCATCAGTTTCGG 59.547 55.000 0.00 0.00 0.00 4.30
125 126 0.327924 ACATGCCCATCAGTTTCGGA 59.672 50.000 0.00 0.00 0.00 4.55
126 127 0.734889 CATGCCCATCAGTTTCGGAC 59.265 55.000 0.00 0.00 0.00 4.79
127 128 0.394352 ATGCCCATCAGTTTCGGACC 60.394 55.000 0.00 0.00 0.00 4.46
128 129 1.749258 GCCCATCAGTTTCGGACCC 60.749 63.158 0.00 0.00 0.00 4.46
129 130 1.682849 CCCATCAGTTTCGGACCCA 59.317 57.895 0.00 0.00 0.00 4.51
130 131 0.392998 CCCATCAGTTTCGGACCCAG 60.393 60.000 0.00 0.00 0.00 4.45
131 132 0.613260 CCATCAGTTTCGGACCCAGA 59.387 55.000 0.00 0.00 0.00 3.86
132 133 1.406069 CCATCAGTTTCGGACCCAGAG 60.406 57.143 0.00 0.00 0.00 3.35
133 134 1.276421 CATCAGTTTCGGACCCAGAGT 59.724 52.381 0.00 0.00 0.00 3.24
134 135 0.966920 TCAGTTTCGGACCCAGAGTC 59.033 55.000 0.00 0.00 45.51 3.36
135 136 0.969894 CAGTTTCGGACCCAGAGTCT 59.030 55.000 0.00 0.00 45.54 3.24
136 137 1.344763 CAGTTTCGGACCCAGAGTCTT 59.655 52.381 0.00 0.00 45.54 3.01
137 138 2.047830 AGTTTCGGACCCAGAGTCTTT 58.952 47.619 0.00 0.00 45.54 2.52
138 139 3.006537 CAGTTTCGGACCCAGAGTCTTTA 59.993 47.826 0.00 0.00 45.54 1.85
139 140 3.644738 AGTTTCGGACCCAGAGTCTTTAA 59.355 43.478 0.00 0.00 45.54 1.52
140 141 4.286291 AGTTTCGGACCCAGAGTCTTTAAT 59.714 41.667 0.00 0.00 45.54 1.40
141 142 5.482878 AGTTTCGGACCCAGAGTCTTTAATA 59.517 40.000 0.00 0.00 45.54 0.98
142 143 4.996788 TCGGACCCAGAGTCTTTAATAC 57.003 45.455 0.00 0.00 45.54 1.89
143 144 4.607239 TCGGACCCAGAGTCTTTAATACT 58.393 43.478 0.00 0.00 45.54 2.12
144 145 5.021458 TCGGACCCAGAGTCTTTAATACTT 58.979 41.667 0.00 0.00 45.54 2.24
145 146 5.482878 TCGGACCCAGAGTCTTTAATACTTT 59.517 40.000 0.00 0.00 45.54 2.66
146 147 6.013984 TCGGACCCAGAGTCTTTAATACTTTT 60.014 38.462 0.00 0.00 45.54 2.27
147 148 7.178983 TCGGACCCAGAGTCTTTAATACTTTTA 59.821 37.037 0.00 0.00 45.54 1.52
148 149 7.820872 CGGACCCAGAGTCTTTAATACTTTTAA 59.179 37.037 0.00 0.00 45.54 1.52
149 150 9.163899 GGACCCAGAGTCTTTAATACTTTTAAG 57.836 37.037 0.00 0.00 45.54 1.85
150 151 9.939802 GACCCAGAGTCTTTAATACTTTTAAGA 57.060 33.333 0.00 0.00 42.69 2.10
221 264 6.292757 CGAGAGTTGATTATCAATCTTGCCAG 60.293 42.308 11.01 3.60 38.79 4.85
226 269 8.031277 AGTTGATTATCAATCTTGCCAGAAAAC 58.969 33.333 11.01 0.00 38.79 2.43
229 272 2.247358 TCAATCTTGCCAGAAAACCCC 58.753 47.619 0.00 0.00 30.76 4.95
230 273 1.067635 CAATCTTGCCAGAAAACCCCG 60.068 52.381 0.00 0.00 30.76 5.73
248 291 2.613977 CCCGCCTTAGGATAATCAGCTG 60.614 54.545 7.63 7.63 0.00 4.24
251 294 3.321497 GCCTTAGGATAATCAGCTGACG 58.679 50.000 20.97 0.00 0.00 4.35
291 334 6.919662 ACAAAGTTGATAATTGTGCTGTCAAG 59.080 34.615 0.00 0.00 36.03 3.02
306 349 7.175467 TGTGCTGTCAAGAAATGAAGTCATAAT 59.825 33.333 0.00 0.00 40.50 1.28
378 421 3.251004 AGCAGGACGAAAATCAACAACTC 59.749 43.478 0.00 0.00 0.00 3.01
379 422 3.003275 GCAGGACGAAAATCAACAACTCA 59.997 43.478 0.00 0.00 0.00 3.41
410 453 6.015010 CCACCATACCAAGTTGTTTTCCAATA 60.015 38.462 1.45 0.00 35.02 1.90
421 464 9.574516 AAGTTGTTTTCCAATATGAGAACTACT 57.425 29.630 7.33 7.33 42.60 2.57
456 499 2.892784 AGCGGTATCTAACAGGAAGC 57.107 50.000 0.00 0.00 0.00 3.86
457 500 2.389715 AGCGGTATCTAACAGGAAGCT 58.610 47.619 0.00 0.00 0.00 3.74
458 501 3.563223 AGCGGTATCTAACAGGAAGCTA 58.437 45.455 0.00 0.00 0.00 3.32
459 502 3.318557 AGCGGTATCTAACAGGAAGCTAC 59.681 47.826 0.00 0.00 0.00 3.58
460 503 3.552478 GCGGTATCTAACAGGAAGCTACC 60.552 52.174 0.00 0.00 34.02 3.18
461 504 3.304525 CGGTATCTAACAGGAAGCTACCG 60.305 52.174 10.11 10.11 46.51 4.02
462 505 2.892784 ATCTAACAGGAAGCTACCGC 57.107 50.000 0.00 0.00 34.73 5.68
523 567 3.040477 CCAATATTGCCCACCCTTTCAT 58.960 45.455 10.11 0.00 0.00 2.57
527 571 1.337118 TTGCCCACCCTTTCATGAAC 58.663 50.000 7.89 0.00 0.00 3.18
560 607 5.741388 ACAATCATAATCAGCGAACCTTC 57.259 39.130 0.00 0.00 0.00 3.46
576 623 0.249489 CTTCGCTGGGAGGGATTACG 60.249 60.000 0.00 0.00 37.03 3.18
600 647 6.585702 CGATTGTGAAAATTTGATGGCAACTA 59.414 34.615 0.00 0.00 32.79 2.24
659 706 1.421382 CAAGCACGGCAATTTTCTGG 58.579 50.000 0.00 0.00 0.00 3.86
694 741 4.487412 GCGGAGTTGCCATGCTGC 62.487 66.667 0.00 0.00 35.94 5.25
702 749 2.091541 GTTGCCATGCTGCCTAACTAA 58.908 47.619 0.00 0.00 0.00 2.24
733 780 1.068895 CTCAGCCAACACAAATTGCCA 59.931 47.619 0.00 0.00 0.00 4.92
759 806 1.083489 TCGTTCGCAAATGTCATCCC 58.917 50.000 0.00 0.00 0.00 3.85
763 810 2.749621 GTTCGCAAATGTCATCCCTCTT 59.250 45.455 0.00 0.00 0.00 2.85
766 813 2.289002 CGCAAATGTCATCCCTCTTAGC 59.711 50.000 0.00 0.00 0.00 3.09
799 848 4.526650 GGCTATTGGGTCCAAAAGAAAAGA 59.473 41.667 6.52 0.00 39.55 2.52
827 876 8.876275 ATATAATTTTCAATCGCATTTGCTGT 57.124 26.923 0.51 0.00 39.32 4.40
831 880 1.469703 TCAATCGCATTTGCTGTCTGG 59.530 47.619 0.51 0.00 39.32 3.86
838 887 3.486375 CGCATTTGCTGTCTGGATAGTTG 60.486 47.826 0.51 0.00 39.32 3.16
840 889 2.787473 TTGCTGTCTGGATAGTTGGG 57.213 50.000 0.00 0.00 0.00 4.12
841 890 0.911769 TGCTGTCTGGATAGTTGGGG 59.088 55.000 0.00 0.00 0.00 4.96
842 891 0.181350 GCTGTCTGGATAGTTGGGGG 59.819 60.000 0.00 0.00 0.00 5.40
863 912 3.324108 GGGGAGGGCGGTTGTACA 61.324 66.667 0.00 0.00 0.00 2.90
895 944 1.595109 TGACCAGAGTGCTTGCGTG 60.595 57.895 0.00 0.00 0.00 5.34
922 971 0.669625 AAACGAGCACGGGAGCTAAC 60.670 55.000 8.74 0.00 46.75 2.34
928 977 0.320421 GCACGGGAGCTAACTGACAA 60.320 55.000 0.00 0.00 0.00 3.18
1067 1131 4.063967 CTACCACACCGCCGCTCA 62.064 66.667 0.00 0.00 0.00 4.26
1205 1269 4.131088 GTCTCGGAGGCACGGACC 62.131 72.222 4.40 0.00 32.01 4.46
1248 1312 4.308458 CACCGGCGTCACCTCCAA 62.308 66.667 6.01 0.00 35.61 3.53
1258 1322 1.267806 GTCACCTCCAAAGACGTCGTA 59.732 52.381 10.46 0.00 0.00 3.43
1304 1368 2.496817 GCCTCTACCTGCCAGACG 59.503 66.667 0.00 0.00 0.00 4.18
1339 1403 3.771160 GACGGCCCCGACATCAGT 61.771 66.667 14.44 0.00 42.83 3.41
1342 1406 2.717044 CGGCCCCGACATCAGTACA 61.717 63.158 0.00 0.00 42.83 2.90
1348 1412 1.153842 CGACATCAGTACAGCCGCA 60.154 57.895 0.00 0.00 0.00 5.69
1405 1469 2.223409 CGGTTACTTCATCGTCGGATCA 60.223 50.000 0.00 0.00 0.00 2.92
1961 2031 3.858868 GACGCCGTGAAGTCCAGCA 62.859 63.158 0.00 0.00 0.00 4.41
2004 2074 2.125512 CGAGTCGGAAGGCAAGGG 60.126 66.667 4.10 0.00 38.99 3.95
2088 2158 1.226660 GTTTCATCGCCGGCCATTG 60.227 57.895 23.46 16.03 0.00 2.82
2094 2164 0.108585 ATCGCCGGCCATTGATAACT 59.891 50.000 23.46 0.00 0.00 2.24
2109 2179 4.264253 TGATAACTGGGCTCTCAAATGTG 58.736 43.478 0.00 0.00 0.00 3.21
2117 2187 3.128242 GGGCTCTCAAATGTGAAGTGATG 59.872 47.826 0.00 0.00 31.88 3.07
2120 2190 5.278660 GGCTCTCAAATGTGAAGTGATGTTT 60.279 40.000 0.00 0.00 31.88 2.83
2121 2191 5.628193 GCTCTCAAATGTGAAGTGATGTTTG 59.372 40.000 0.00 0.00 31.88 2.93
2123 2193 4.619973 TCAAATGTGAAGTGATGTTTGGC 58.380 39.130 0.00 0.00 0.00 4.52
2124 2194 4.341806 TCAAATGTGAAGTGATGTTTGGCT 59.658 37.500 0.00 0.00 0.00 4.75
2126 2196 5.376854 AATGTGAAGTGATGTTTGGCTAC 57.623 39.130 0.00 0.00 0.00 3.58
2127 2197 3.146066 TGTGAAGTGATGTTTGGCTACC 58.854 45.455 0.00 0.00 0.00 3.18
2128 2198 2.159627 GTGAAGTGATGTTTGGCTACCG 59.840 50.000 0.00 0.00 0.00 4.02
2129 2199 2.224426 TGAAGTGATGTTTGGCTACCGT 60.224 45.455 0.00 0.00 0.00 4.83
2130 2200 2.094762 AGTGATGTTTGGCTACCGTC 57.905 50.000 0.00 0.00 0.00 4.79
2133 2203 2.747446 GTGATGTTTGGCTACCGTCATT 59.253 45.455 0.00 0.00 0.00 2.57
2134 2204 3.006940 TGATGTTTGGCTACCGTCATTC 58.993 45.455 0.00 0.00 0.00 2.67
2136 2206 1.270412 TGTTTGGCTACCGTCATTCGT 60.270 47.619 0.00 0.00 37.94 3.85
2137 2207 1.802365 GTTTGGCTACCGTCATTCGTT 59.198 47.619 0.00 0.00 37.94 3.85
2139 2209 1.017177 TGGCTACCGTCATTCGTTGC 61.017 55.000 0.00 0.00 37.94 4.17
2141 2211 1.076332 GCTACCGTCATTCGTTGCTT 58.924 50.000 0.00 0.00 37.94 3.91
2142 2212 1.201921 GCTACCGTCATTCGTTGCTTG 60.202 52.381 0.00 0.00 37.94 4.01
2143 2213 2.333926 CTACCGTCATTCGTTGCTTGA 58.666 47.619 0.00 0.00 37.94 3.02
2144 2214 1.588674 ACCGTCATTCGTTGCTTGAA 58.411 45.000 0.00 0.00 37.94 2.69
2145 2215 1.531149 ACCGTCATTCGTTGCTTGAAG 59.469 47.619 0.00 0.00 37.94 3.02
2146 2216 1.798223 CCGTCATTCGTTGCTTGAAGA 59.202 47.619 0.00 0.00 37.94 2.87
2150 2220 4.214437 GTCATTCGTTGCTTGAAGAACTG 58.786 43.478 0.00 0.00 0.00 3.16
2151 2221 3.876914 TCATTCGTTGCTTGAAGAACTGT 59.123 39.130 0.00 0.00 0.00 3.55
2152 2222 3.673746 TTCGTTGCTTGAAGAACTGTG 57.326 42.857 0.00 0.00 0.00 3.66
2155 2225 2.543848 CGTTGCTTGAAGAACTGTGCTA 59.456 45.455 0.00 0.00 0.00 3.49
2156 2226 3.187227 CGTTGCTTGAAGAACTGTGCTAT 59.813 43.478 0.00 0.00 0.00 2.97
2157 2227 4.667668 CGTTGCTTGAAGAACTGTGCTATC 60.668 45.833 0.00 0.00 0.00 2.08
2159 2229 4.645535 TGCTTGAAGAACTGTGCTATCTT 58.354 39.130 0.00 0.00 36.17 2.40
2160 2230 5.793817 TGCTTGAAGAACTGTGCTATCTTA 58.206 37.500 0.00 0.00 33.73 2.10
2161 2231 6.409704 TGCTTGAAGAACTGTGCTATCTTAT 58.590 36.000 0.00 0.00 33.73 1.73
2162 2232 7.555965 TGCTTGAAGAACTGTGCTATCTTATA 58.444 34.615 0.00 0.00 33.73 0.98
2163 2233 8.040727 TGCTTGAAGAACTGTGCTATCTTATAA 58.959 33.333 0.00 0.00 33.73 0.98
2164 2234 9.050601 GCTTGAAGAACTGTGCTATCTTATAAT 57.949 33.333 0.00 0.00 33.73 1.28
2170 2240 9.757227 AGAACTGTGCTATCTTATAATTCAGTC 57.243 33.333 0.00 0.00 33.46 3.51
2196 2266 3.588955 GAAATGGAAACTGAATGGTGGC 58.411 45.455 0.00 0.00 0.00 5.01
2205 2275 3.030291 ACTGAATGGTGGCAAGTTTTCA 58.970 40.909 0.00 0.00 0.00 2.69
2206 2276 3.450457 ACTGAATGGTGGCAAGTTTTCAA 59.550 39.130 0.00 0.00 0.00 2.69
2223 2293 7.955918 AGTTTTCAATCAGAGCCTTGTATTTT 58.044 30.769 0.00 0.00 0.00 1.82
2224 2294 8.424133 AGTTTTCAATCAGAGCCTTGTATTTTT 58.576 29.630 0.00 0.00 0.00 1.94
2225 2295 8.703336 GTTTTCAATCAGAGCCTTGTATTTTTC 58.297 33.333 0.00 0.00 0.00 2.29
2227 2297 7.523293 TCAATCAGAGCCTTGTATTTTTCAA 57.477 32.000 0.00 0.00 0.00 2.69
2228 2298 7.370383 TCAATCAGAGCCTTGTATTTTTCAAC 58.630 34.615 0.00 0.00 0.00 3.18
2230 2300 4.215399 TCAGAGCCTTGTATTTTTCAACCG 59.785 41.667 0.00 0.00 0.00 4.44
2233 2303 2.559231 GCCTTGTATTTTTCAACCGGGA 59.441 45.455 6.32 0.00 0.00 5.14
2237 2307 3.822940 TGTATTTTTCAACCGGGACAGT 58.177 40.909 6.32 0.00 0.00 3.55
2280 2350 3.868369 GCTTGTGGAAAATAAAAGGGCCC 60.868 47.826 16.46 16.46 0.00 5.80
2283 2353 2.236146 GTGGAAAATAAAAGGGCCCCTG 59.764 50.000 21.43 0.00 32.13 4.45
2304 2374 6.350780 CCCTGAAATTCAAGATTTTCCTCTGG 60.351 42.308 12.33 9.76 32.61 3.86
2308 2378 6.983906 AATTCAAGATTTTCCTCTGGTTGT 57.016 33.333 0.00 0.00 0.00 3.32
2310 2380 5.772825 TCAAGATTTTCCTCTGGTTGTTG 57.227 39.130 0.00 0.00 0.00 3.33
2343 2428 7.546250 AGAGAACTTGACTAGAAAAGGATGA 57.454 36.000 0.00 0.00 0.00 2.92
2347 2432 7.659390 AGAACTTGACTAGAAAAGGATGAACAG 59.341 37.037 0.00 0.00 0.00 3.16
2366 2451 5.320549 ACAGGAAATGAGCAATGTCAATC 57.679 39.130 0.00 0.00 0.00 2.67
2377 2462 4.801891 GCAATGTCAATCTTGCTTTGAGA 58.198 39.130 2.95 0.00 43.41 3.27
2379 2464 5.118203 GCAATGTCAATCTTGCTTTGAGAAC 59.882 40.000 2.95 0.00 43.41 3.01
2384 2469 5.396654 GTCAATCTTGCTTTGAGAACGAAAC 59.603 40.000 0.00 0.00 33.95 2.78
2385 2470 3.963383 TCTTGCTTTGAGAACGAAACC 57.037 42.857 0.00 0.00 0.00 3.27
2386 2471 2.286833 TCTTGCTTTGAGAACGAAACCG 59.713 45.455 0.00 0.00 0.00 4.44
2387 2472 0.306533 TGCTTTGAGAACGAAACCGC 59.693 50.000 0.00 0.00 0.00 5.68
2388 2473 0.721483 GCTTTGAGAACGAAACCGCG 60.721 55.000 0.00 0.00 37.29 6.46
2390 2475 1.788308 CTTTGAGAACGAAACCGCGTA 59.212 47.619 4.92 0.00 44.86 4.42
2391 2476 1.411394 TTGAGAACGAAACCGCGTAG 58.589 50.000 4.92 0.00 44.86 3.51
2392 2477 0.592637 TGAGAACGAAACCGCGTAGA 59.407 50.000 4.92 0.00 44.86 2.59
2393 2478 1.200716 TGAGAACGAAACCGCGTAGAT 59.799 47.619 4.92 0.00 44.86 1.98
2394 2479 1.844962 GAGAACGAAACCGCGTAGATC 59.155 52.381 4.92 0.00 44.86 2.75
2395 2480 1.200716 AGAACGAAACCGCGTAGATCA 59.799 47.619 4.92 0.00 44.86 2.92
2396 2481 2.159282 AGAACGAAACCGCGTAGATCAT 60.159 45.455 4.92 0.00 44.86 2.45
2397 2482 1.836383 ACGAAACCGCGTAGATCATC 58.164 50.000 4.92 0.00 43.61 2.92
2398 2483 1.404391 ACGAAACCGCGTAGATCATCT 59.596 47.619 4.92 0.00 43.61 2.90
2399 2484 2.159282 ACGAAACCGCGTAGATCATCTT 60.159 45.455 4.92 0.00 43.61 2.40
2400 2485 2.858344 CGAAACCGCGTAGATCATCTTT 59.142 45.455 4.92 0.00 0.00 2.52
2401 2486 3.306166 CGAAACCGCGTAGATCATCTTTT 59.694 43.478 4.92 0.00 0.00 2.27
2402 2487 4.578601 GAAACCGCGTAGATCATCTTTTG 58.421 43.478 4.92 0.00 0.00 2.44
2403 2488 3.247006 ACCGCGTAGATCATCTTTTGT 57.753 42.857 4.92 0.00 0.00 2.83
2404 2489 3.596214 ACCGCGTAGATCATCTTTTGTT 58.404 40.909 4.92 0.00 0.00 2.83
2405 2490 4.000988 ACCGCGTAGATCATCTTTTGTTT 58.999 39.130 4.92 0.00 0.00 2.83
2406 2491 4.142902 ACCGCGTAGATCATCTTTTGTTTG 60.143 41.667 4.92 0.00 0.00 2.93
2407 2492 4.334443 CGCGTAGATCATCTTTTGTTTGG 58.666 43.478 0.00 0.00 0.00 3.28
2408 2493 4.662145 GCGTAGATCATCTTTTGTTTGGG 58.338 43.478 0.00 0.00 0.00 4.12
2409 2494 4.156008 GCGTAGATCATCTTTTGTTTGGGT 59.844 41.667 0.00 0.00 0.00 4.51
2410 2495 5.631026 CGTAGATCATCTTTTGTTTGGGTG 58.369 41.667 0.00 0.00 0.00 4.61
2411 2496 4.525912 AGATCATCTTTTGTTTGGGTGC 57.474 40.909 0.00 0.00 0.00 5.01
2412 2497 4.154942 AGATCATCTTTTGTTTGGGTGCT 58.845 39.130 0.00 0.00 0.00 4.40
2413 2498 3.731652 TCATCTTTTGTTTGGGTGCTG 57.268 42.857 0.00 0.00 0.00 4.41
2414 2499 2.364970 TCATCTTTTGTTTGGGTGCTGG 59.635 45.455 0.00 0.00 0.00 4.85
2415 2500 1.859302 TCTTTTGTTTGGGTGCTGGT 58.141 45.000 0.00 0.00 0.00 4.00
2416 2501 3.019799 TCTTTTGTTTGGGTGCTGGTA 57.980 42.857 0.00 0.00 0.00 3.25
2417 2502 3.366396 TCTTTTGTTTGGGTGCTGGTAA 58.634 40.909 0.00 0.00 0.00 2.85
2418 2503 3.383185 TCTTTTGTTTGGGTGCTGGTAAG 59.617 43.478 0.00 0.00 0.00 2.34
2433 2518 5.763088 GCTGGTAAGCTAAATTTATCAGGC 58.237 41.667 5.10 0.00 46.60 4.85
2434 2519 5.299279 GCTGGTAAGCTAAATTTATCAGGCA 59.701 40.000 9.15 0.00 46.60 4.75
2435 2520 6.514048 GCTGGTAAGCTAAATTTATCAGGCAG 60.514 42.308 9.15 0.00 46.60 4.85
2436 2521 6.423182 TGGTAAGCTAAATTTATCAGGCAGT 58.577 36.000 9.15 1.25 0.00 4.40
2437 2522 6.889722 TGGTAAGCTAAATTTATCAGGCAGTT 59.110 34.615 9.15 0.61 0.00 3.16
2438 2523 8.050325 TGGTAAGCTAAATTTATCAGGCAGTTA 58.950 33.333 9.15 0.00 0.00 2.24
2439 2524 8.560374 GGTAAGCTAAATTTATCAGGCAGTTAG 58.440 37.037 9.15 0.00 0.00 2.34
2440 2525 9.110502 GTAAGCTAAATTTATCAGGCAGTTAGT 57.889 33.333 9.15 0.00 0.00 2.24
2442 2527 9.853177 AAGCTAAATTTATCAGGCAGTTAGTAT 57.147 29.630 9.15 0.00 0.00 2.12
2443 2528 9.853177 AGCTAAATTTATCAGGCAGTTAGTATT 57.147 29.630 9.15 0.00 0.00 1.89
2444 2529 9.884465 GCTAAATTTATCAGGCAGTTAGTATTG 57.116 33.333 0.00 0.00 0.00 1.90
2447 2532 8.807948 AATTTATCAGGCAGTTAGTATTGTGT 57.192 30.769 0.00 0.00 0.00 3.72
2448 2533 9.899661 AATTTATCAGGCAGTTAGTATTGTGTA 57.100 29.630 0.00 0.00 0.00 2.90
2449 2534 8.712285 TTTATCAGGCAGTTAGTATTGTGTAC 57.288 34.615 0.00 0.00 0.00 2.90
2450 2535 5.995565 TCAGGCAGTTAGTATTGTGTACT 57.004 39.130 0.00 0.00 0.00 2.73
2451 2536 6.354794 TCAGGCAGTTAGTATTGTGTACTT 57.645 37.500 0.00 0.00 0.00 2.24
2452 2537 6.765403 TCAGGCAGTTAGTATTGTGTACTTT 58.235 36.000 0.00 0.00 0.00 2.66
2453 2538 6.649141 TCAGGCAGTTAGTATTGTGTACTTTG 59.351 38.462 0.00 0.00 0.00 2.77
2454 2539 6.426937 CAGGCAGTTAGTATTGTGTACTTTGT 59.573 38.462 0.00 0.00 0.00 2.83
2455 2540 7.601130 CAGGCAGTTAGTATTGTGTACTTTGTA 59.399 37.037 0.00 0.00 0.00 2.41
2456 2541 7.601508 AGGCAGTTAGTATTGTGTACTTTGTAC 59.398 37.037 0.00 1.33 0.00 2.90
2457 2542 7.148523 GGCAGTTAGTATTGTGTACTTTGTACC 60.149 40.741 5.55 0.00 0.00 3.34
2458 2543 7.601508 GCAGTTAGTATTGTGTACTTTGTACCT 59.398 37.037 5.55 0.00 0.00 3.08
2459 2544 9.136952 CAGTTAGTATTGTGTACTTTGTACCTC 57.863 37.037 5.55 0.92 0.00 3.85
2460 2545 8.309656 AGTTAGTATTGTGTACTTTGTACCTCC 58.690 37.037 5.55 0.00 0.00 4.30
2461 2546 5.717119 AGTATTGTGTACTTTGTACCTCCG 58.283 41.667 5.55 0.00 0.00 4.63
2462 2547 4.877378 ATTGTGTACTTTGTACCTCCGA 57.123 40.909 5.55 0.00 0.00 4.55
2463 2548 4.669206 TTGTGTACTTTGTACCTCCGAA 57.331 40.909 5.55 0.00 0.00 4.30
2464 2549 4.247267 TGTGTACTTTGTACCTCCGAAG 57.753 45.455 5.55 0.00 0.00 3.79
2465 2550 3.890756 TGTGTACTTTGTACCTCCGAAGA 59.109 43.478 5.55 0.00 0.00 2.87
2466 2551 4.341806 TGTGTACTTTGTACCTCCGAAGAA 59.658 41.667 5.55 0.00 0.00 2.52
2467 2552 4.683320 GTGTACTTTGTACCTCCGAAGAAC 59.317 45.833 5.55 0.00 0.00 3.01
2468 2553 4.586001 TGTACTTTGTACCTCCGAAGAACT 59.414 41.667 5.55 0.00 0.00 3.01
2469 2554 4.684484 ACTTTGTACCTCCGAAGAACTT 57.316 40.909 0.00 0.00 0.00 2.66
2470 2555 4.629092 ACTTTGTACCTCCGAAGAACTTC 58.371 43.478 4.67 4.67 36.29 3.01
2471 2556 4.344390 ACTTTGTACCTCCGAAGAACTTCT 59.656 41.667 11.85 0.00 37.44 2.85
2472 2557 5.537674 ACTTTGTACCTCCGAAGAACTTCTA 59.462 40.000 11.85 1.05 37.44 2.10
2473 2558 5.382618 TTGTACCTCCGAAGAACTTCTAC 57.617 43.478 11.85 7.97 37.44 2.59
2474 2559 4.660168 TGTACCTCCGAAGAACTTCTACT 58.340 43.478 11.85 0.00 37.44 2.57
2475 2560 4.458295 TGTACCTCCGAAGAACTTCTACTG 59.542 45.833 11.85 2.55 37.44 2.74
2476 2561 2.231721 ACCTCCGAAGAACTTCTACTGC 59.768 50.000 11.85 0.00 37.44 4.40
2477 2562 2.494073 CCTCCGAAGAACTTCTACTGCT 59.506 50.000 11.85 0.00 37.44 4.24
2478 2563 3.056465 CCTCCGAAGAACTTCTACTGCTT 60.056 47.826 11.85 0.00 37.44 3.91
2479 2564 4.561105 CTCCGAAGAACTTCTACTGCTTT 58.439 43.478 11.85 0.00 37.44 3.51
2480 2565 4.957296 TCCGAAGAACTTCTACTGCTTTT 58.043 39.130 11.85 0.00 37.44 2.27
2481 2566 5.365619 TCCGAAGAACTTCTACTGCTTTTT 58.634 37.500 11.85 0.00 37.44 1.94
2482 2567 6.518493 TCCGAAGAACTTCTACTGCTTTTTA 58.482 36.000 11.85 0.00 37.44 1.52
2483 2568 6.987992 TCCGAAGAACTTCTACTGCTTTTTAA 59.012 34.615 11.85 0.00 37.44 1.52
2484 2569 7.660208 TCCGAAGAACTTCTACTGCTTTTTAAT 59.340 33.333 11.85 0.00 37.44 1.40
2485 2570 7.958025 CCGAAGAACTTCTACTGCTTTTTAATC 59.042 37.037 11.85 0.00 37.44 1.75
2486 2571 7.684489 CGAAGAACTTCTACTGCTTTTTAATCG 59.316 37.037 11.85 0.00 37.44 3.34
2487 2572 6.832804 AGAACTTCTACTGCTTTTTAATCGC 58.167 36.000 0.00 0.00 0.00 4.58
2488 2573 6.426937 AGAACTTCTACTGCTTTTTAATCGCA 59.573 34.615 0.00 0.00 0.00 5.10
2489 2574 5.928153 ACTTCTACTGCTTTTTAATCGCAC 58.072 37.500 0.00 0.00 0.00 5.34
2490 2575 5.468746 ACTTCTACTGCTTTTTAATCGCACA 59.531 36.000 0.00 0.00 0.00 4.57
2491 2576 5.277601 TCTACTGCTTTTTAATCGCACAC 57.722 39.130 0.00 0.00 0.00 3.82
2492 2577 2.916111 ACTGCTTTTTAATCGCACACG 58.084 42.857 0.00 0.00 42.01 4.49
2502 2587 4.798152 CGCACACGAACACATCAC 57.202 55.556 0.00 0.00 43.93 3.06
2503 2588 1.204062 CGCACACGAACACATCACC 59.796 57.895 0.00 0.00 43.93 4.02
2504 2589 1.204062 GCACACGAACACATCACCG 59.796 57.895 0.00 0.00 0.00 4.94
2505 2590 1.495584 GCACACGAACACATCACCGT 61.496 55.000 0.00 0.00 35.46 4.83
2513 2598 3.436001 CACATCACCGTGTACCCTC 57.564 57.895 0.00 0.00 32.00 4.30
2514 2599 0.457853 CACATCACCGTGTACCCTCG 60.458 60.000 0.00 0.00 32.00 4.63
2515 2600 0.609957 ACATCACCGTGTACCCTCGA 60.610 55.000 0.00 0.00 0.00 4.04
2516 2601 0.179145 CATCACCGTGTACCCTCGAC 60.179 60.000 0.00 0.00 0.00 4.20
2517 2602 1.651240 ATCACCGTGTACCCTCGACG 61.651 60.000 0.00 0.00 0.00 5.12
2518 2603 3.741476 ACCGTGTACCCTCGACGC 61.741 66.667 0.00 0.00 0.00 5.19
2519 2604 4.487412 CCGTGTACCCTCGACGCC 62.487 72.222 0.00 0.00 0.00 5.68
2520 2605 4.487412 CGTGTACCCTCGACGCCC 62.487 72.222 0.00 0.00 0.00 6.13
2521 2606 3.376078 GTGTACCCTCGACGCCCA 61.376 66.667 0.00 0.00 0.00 5.36
2522 2607 3.066190 TGTACCCTCGACGCCCAG 61.066 66.667 0.00 0.00 0.00 4.45
2523 2608 4.509737 GTACCCTCGACGCCCAGC 62.510 72.222 0.00 0.00 0.00 4.85
2568 2656 2.050442 GCGGGCGTTTTTGTGGAG 60.050 61.111 0.00 0.00 0.00 3.86
2573 2661 1.082104 GCGTTTTTGTGGAGCCGAG 60.082 57.895 0.00 0.00 0.00 4.63
2582 2670 1.913262 TGGAGCCGAGACACCACAT 60.913 57.895 0.00 0.00 0.00 3.21
2587 2675 2.815211 CGAGACACCACATGCCCG 60.815 66.667 0.00 0.00 0.00 6.13
2588 2676 2.662596 GAGACACCACATGCCCGA 59.337 61.111 0.00 0.00 0.00 5.14
2591 2679 1.741770 GACACCACATGCCCGAGAC 60.742 63.158 0.00 0.00 0.00 3.36
2636 2724 0.554305 TATGGACTGCCCTAGGTCGA 59.446 55.000 8.29 0.00 35.38 4.20
2652 2740 1.828660 CGACCTGATCGCCCCTAGT 60.829 63.158 0.00 0.00 45.52 2.57
2658 2746 2.041922 ATCGCCCCTAGTGCCTCA 60.042 61.111 0.00 0.00 0.00 3.86
2667 2755 0.741221 CTAGTGCCTCAAGGTTCGCC 60.741 60.000 0.00 0.00 37.57 5.54
2678 2775 2.029743 GGTTCGCCTGCAAAGAACA 58.970 52.632 21.96 0.00 44.20 3.18
2697 2794 8.748380 AAGAACAAACAAAGAACAAGAAGAAG 57.252 30.769 0.00 0.00 0.00 2.85
2700 2797 8.520835 AACAAACAAAGAACAAGAAGAAGAAC 57.479 30.769 0.00 0.00 0.00 3.01
2714 2814 4.359434 AGAAGAACAAAGGGAGAAGGTC 57.641 45.455 0.00 0.00 0.00 3.85
2717 2817 4.092116 AGAACAAAGGGAGAAGGTCAAG 57.908 45.455 0.00 0.00 0.00 3.02
2723 2823 5.137551 CAAAGGGAGAAGGTCAAGGTAAAA 58.862 41.667 0.00 0.00 0.00 1.52
2758 2868 3.183574 GTCGATCGTGTGTTGTTCAATCA 59.816 43.478 15.94 0.00 0.00 2.57
2767 2877 1.601903 GTTGTTCAATCAGCCGTCACA 59.398 47.619 0.00 0.00 0.00 3.58
2771 2881 2.744202 GTTCAATCAGCCGTCACATCTT 59.256 45.455 0.00 0.00 0.00 2.40
2811 2921 4.686191 TGGACTACCCGTACAAGAAAAA 57.314 40.909 0.00 0.00 32.12 1.94
2875 2987 3.153130 TCGGACATGAATCTTTGGCAAA 58.847 40.909 12.79 12.79 0.00 3.68
2891 3003 3.571828 TGGCAAATTTTCGGATCAACTCA 59.428 39.130 0.00 0.00 0.00 3.41
2920 3032 0.767060 AGTGGTTTCCTTCGGTCCCT 60.767 55.000 0.00 0.00 0.00 4.20
2952 3079 7.048512 TCTGTAATCTTCTGTATCTCACTCGA 58.951 38.462 0.00 0.00 0.00 4.04
3025 3154 1.616865 TCAAATCAACTCGGTCGGTCT 59.383 47.619 0.00 0.00 0.00 3.85
3036 3165 1.630148 GGTCGGTCTGAAATGACTCG 58.370 55.000 0.00 0.00 37.16 4.18
3083 3212 1.813753 CTCCACGGGTTGCATACGG 60.814 63.158 9.48 2.87 0.00 4.02
3093 3222 1.593006 GTTGCATACGGTCTCGGATTG 59.407 52.381 0.00 0.00 37.97 2.67
3119 3248 7.845483 AGACGATTCTCATATCAAAATCAACG 58.155 34.615 0.00 0.00 0.00 4.10
3131 3260 1.425412 AATCAACGGTTTCGACGAGG 58.575 50.000 0.00 0.00 40.11 4.63
3146 3275 1.873591 ACGAGGCACACAACTTTCATC 59.126 47.619 0.00 0.00 0.00 2.92
3167 3298 6.377996 TCATCTTGAAACATTTTCCATCCGAT 59.622 34.615 0.00 0.00 0.00 4.18
3196 3330 7.465353 TCTTAATTGAGTTTCATGCCATTCA 57.535 32.000 0.00 0.00 0.00 2.57
3271 3405 4.689345 CGAACTCCGTTTTAGACCATCTTT 59.311 41.667 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.269297 GCGAAGTCTCATTGAAGTTATGAAAAC 59.731 37.037 0.00 0.00 32.02 2.43
1 2 7.298122 GCGAAGTCTCATTGAAGTTATGAAAA 58.702 34.615 0.00 0.00 32.02 2.29
2 3 6.128282 GGCGAAGTCTCATTGAAGTTATGAAA 60.128 38.462 0.00 0.00 32.02 2.69
3 4 5.351465 GGCGAAGTCTCATTGAAGTTATGAA 59.649 40.000 0.00 0.00 32.02 2.57
4 5 4.870426 GGCGAAGTCTCATTGAAGTTATGA 59.130 41.667 0.00 0.00 0.00 2.15
5 6 4.631377 TGGCGAAGTCTCATTGAAGTTATG 59.369 41.667 0.00 0.00 0.00 1.90
6 7 4.832248 TGGCGAAGTCTCATTGAAGTTAT 58.168 39.130 0.00 0.00 0.00 1.89
7 8 4.265904 TGGCGAAGTCTCATTGAAGTTA 57.734 40.909 0.00 0.00 0.00 2.24
8 9 3.126001 TGGCGAAGTCTCATTGAAGTT 57.874 42.857 0.00 0.00 0.00 2.66
9 10 2.839486 TGGCGAAGTCTCATTGAAGT 57.161 45.000 0.00 0.00 0.00 3.01
10 11 4.488126 TTTTGGCGAAGTCTCATTGAAG 57.512 40.909 0.00 0.00 0.00 3.02
11 12 4.097135 TGTTTTTGGCGAAGTCTCATTGAA 59.903 37.500 0.00 0.00 0.00 2.69
12 13 3.629855 TGTTTTTGGCGAAGTCTCATTGA 59.370 39.130 0.00 0.00 0.00 2.57
13 14 3.963665 TGTTTTTGGCGAAGTCTCATTG 58.036 40.909 0.00 0.00 0.00 2.82
14 15 4.321230 GGATGTTTTTGGCGAAGTCTCATT 60.321 41.667 0.00 0.00 0.00 2.57
15 16 3.191371 GGATGTTTTTGGCGAAGTCTCAT 59.809 43.478 0.00 0.00 0.00 2.90
16 17 2.552315 GGATGTTTTTGGCGAAGTCTCA 59.448 45.455 0.00 0.00 0.00 3.27
17 18 2.552315 TGGATGTTTTTGGCGAAGTCTC 59.448 45.455 0.00 0.00 0.00 3.36
18 19 2.582052 TGGATGTTTTTGGCGAAGTCT 58.418 42.857 0.00 0.00 0.00 3.24
19 20 3.191371 AGATGGATGTTTTTGGCGAAGTC 59.809 43.478 0.00 0.00 0.00 3.01
20 21 3.157087 AGATGGATGTTTTTGGCGAAGT 58.843 40.909 0.00 0.00 0.00 3.01
21 22 3.441572 AGAGATGGATGTTTTTGGCGAAG 59.558 43.478 0.00 0.00 0.00 3.79
22 23 3.420893 AGAGATGGATGTTTTTGGCGAA 58.579 40.909 0.00 0.00 0.00 4.70
23 24 3.071874 AGAGATGGATGTTTTTGGCGA 57.928 42.857 0.00 0.00 0.00 5.54
24 25 3.428045 GGAAGAGATGGATGTTTTTGGCG 60.428 47.826 0.00 0.00 0.00 5.69
25 26 3.766051 AGGAAGAGATGGATGTTTTTGGC 59.234 43.478 0.00 0.00 0.00 4.52
26 27 5.012239 TGAGGAAGAGATGGATGTTTTTGG 58.988 41.667 0.00 0.00 0.00 3.28
27 28 5.125097 CCTGAGGAAGAGATGGATGTTTTTG 59.875 44.000 0.00 0.00 0.00 2.44
28 29 5.014544 TCCTGAGGAAGAGATGGATGTTTTT 59.985 40.000 0.00 0.00 0.00 1.94
29 30 4.537688 TCCTGAGGAAGAGATGGATGTTTT 59.462 41.667 0.00 0.00 0.00 2.43
30 31 4.107072 TCCTGAGGAAGAGATGGATGTTT 58.893 43.478 0.00 0.00 0.00 2.83
31 32 3.710677 CTCCTGAGGAAGAGATGGATGTT 59.289 47.826 1.41 0.00 31.43 2.71
32 33 3.307506 CTCCTGAGGAAGAGATGGATGT 58.692 50.000 1.41 0.00 31.43 3.06
33 34 2.037511 GCTCCTGAGGAAGAGATGGATG 59.962 54.545 1.41 0.00 31.43 3.51
34 35 2.328319 GCTCCTGAGGAAGAGATGGAT 58.672 52.381 1.41 0.00 31.43 3.41
35 36 1.690845 GGCTCCTGAGGAAGAGATGGA 60.691 57.143 1.41 0.00 31.43 3.41
36 37 0.758123 GGCTCCTGAGGAAGAGATGG 59.242 60.000 1.41 0.00 31.43 3.51
37 38 1.493861 TGGCTCCTGAGGAAGAGATG 58.506 55.000 1.41 0.00 31.43 2.90
38 39 2.438763 CAATGGCTCCTGAGGAAGAGAT 59.561 50.000 1.41 0.00 31.43 2.75
39 40 1.836166 CAATGGCTCCTGAGGAAGAGA 59.164 52.381 1.41 0.00 31.43 3.10
40 41 1.558756 ACAATGGCTCCTGAGGAAGAG 59.441 52.381 1.41 0.00 0.00 2.85
41 42 1.661463 ACAATGGCTCCTGAGGAAGA 58.339 50.000 1.41 0.00 0.00 2.87
42 43 2.503895 AACAATGGCTCCTGAGGAAG 57.496 50.000 1.41 0.00 0.00 3.46
43 44 2.978156 AAACAATGGCTCCTGAGGAA 57.022 45.000 1.41 0.00 0.00 3.36
44 45 2.108075 TGAAAACAATGGCTCCTGAGGA 59.892 45.455 0.00 0.00 0.00 3.71
45 46 2.517959 TGAAAACAATGGCTCCTGAGG 58.482 47.619 0.00 0.00 0.00 3.86
46 47 4.201990 GCTATGAAAACAATGGCTCCTGAG 60.202 45.833 0.00 0.00 0.00 3.35
47 48 3.696051 GCTATGAAAACAATGGCTCCTGA 59.304 43.478 0.00 0.00 0.00 3.86
48 49 3.698040 AGCTATGAAAACAATGGCTCCTG 59.302 43.478 0.00 0.00 37.28 3.86
49 50 3.973425 AGCTATGAAAACAATGGCTCCT 58.027 40.909 0.00 0.00 37.28 3.69
50 51 4.676546 GAAGCTATGAAAACAATGGCTCC 58.323 43.478 0.00 0.00 40.54 4.70
51 52 4.094887 TCGAAGCTATGAAAACAATGGCTC 59.905 41.667 0.00 0.00 40.54 4.70
52 53 4.009675 TCGAAGCTATGAAAACAATGGCT 58.990 39.130 0.00 0.00 42.93 4.75
53 54 4.355543 TCGAAGCTATGAAAACAATGGC 57.644 40.909 0.00 0.00 0.00 4.40
54 55 5.200454 CGATCGAAGCTATGAAAACAATGG 58.800 41.667 10.26 0.00 0.00 3.16
55 56 4.667948 GCGATCGAAGCTATGAAAACAATG 59.332 41.667 21.57 0.00 0.00 2.82
56 57 4.332543 TGCGATCGAAGCTATGAAAACAAT 59.667 37.500 21.57 0.00 35.28 2.71
57 58 3.682377 TGCGATCGAAGCTATGAAAACAA 59.318 39.130 21.57 0.00 35.28 2.83
58 59 3.258228 TGCGATCGAAGCTATGAAAACA 58.742 40.909 21.57 0.00 35.28 2.83
59 60 3.925688 TGCGATCGAAGCTATGAAAAC 57.074 42.857 21.57 0.00 35.28 2.43
60 61 5.484173 AATTGCGATCGAAGCTATGAAAA 57.516 34.783 21.57 0.00 35.28 2.29
61 62 4.024893 GGAATTGCGATCGAAGCTATGAAA 60.025 41.667 21.57 0.00 35.28 2.69
62 63 3.494626 GGAATTGCGATCGAAGCTATGAA 59.505 43.478 21.57 0.00 35.28 2.57
63 64 3.059884 GGAATTGCGATCGAAGCTATGA 58.940 45.455 21.57 0.00 35.28 2.15
64 65 2.158449 GGGAATTGCGATCGAAGCTATG 59.842 50.000 21.57 0.00 35.28 2.23
65 66 2.417719 GGGAATTGCGATCGAAGCTAT 58.582 47.619 21.57 11.35 35.28 2.97
66 67 1.540363 GGGGAATTGCGATCGAAGCTA 60.540 52.381 21.57 9.70 35.28 3.32
67 68 0.815615 GGGGAATTGCGATCGAAGCT 60.816 55.000 21.57 0.00 35.28 3.74
68 69 1.649267 GGGGAATTGCGATCGAAGC 59.351 57.895 21.57 9.01 0.00 3.86
69 70 0.529773 TCGGGGAATTGCGATCGAAG 60.530 55.000 21.57 0.00 0.00 3.79
70 71 0.108089 TTCGGGGAATTGCGATCGAA 60.108 50.000 21.57 5.06 34.85 3.71
71 72 0.108089 TTTCGGGGAATTGCGATCGA 60.108 50.000 21.57 0.00 0.00 3.59
72 73 0.730265 TTTTCGGGGAATTGCGATCG 59.270 50.000 11.69 11.69 0.00 3.69
73 74 1.470890 TGTTTTCGGGGAATTGCGATC 59.529 47.619 0.00 0.00 0.00 3.69
74 75 1.540267 TGTTTTCGGGGAATTGCGAT 58.460 45.000 0.00 0.00 0.00 4.58
75 76 1.470890 GATGTTTTCGGGGAATTGCGA 59.529 47.619 0.00 0.00 0.00 5.10
76 77 1.469079 GGATGTTTTCGGGGAATTGCG 60.469 52.381 0.00 0.00 0.00 4.85
77 78 1.548269 TGGATGTTTTCGGGGAATTGC 59.452 47.619 0.00 0.00 0.00 3.56
78 79 3.701040 AGATGGATGTTTTCGGGGAATTG 59.299 43.478 0.00 0.00 0.00 2.32
79 80 3.954258 GAGATGGATGTTTTCGGGGAATT 59.046 43.478 0.00 0.00 0.00 2.17
80 81 3.053693 TGAGATGGATGTTTTCGGGGAAT 60.054 43.478 0.00 0.00 0.00 3.01
81 82 2.307392 TGAGATGGATGTTTTCGGGGAA 59.693 45.455 0.00 0.00 0.00 3.97
82 83 1.912731 TGAGATGGATGTTTTCGGGGA 59.087 47.619 0.00 0.00 0.00 4.81
83 84 2.418368 TGAGATGGATGTTTTCGGGG 57.582 50.000 0.00 0.00 0.00 5.73
84 85 2.880890 GGATGAGATGGATGTTTTCGGG 59.119 50.000 0.00 0.00 0.00 5.14
85 86 3.313526 GTGGATGAGATGGATGTTTTCGG 59.686 47.826 0.00 0.00 0.00 4.30
86 87 3.940852 TGTGGATGAGATGGATGTTTTCG 59.059 43.478 0.00 0.00 0.00 3.46
87 88 5.735354 GCATGTGGATGAGATGGATGTTTTC 60.735 44.000 0.00 0.00 0.00 2.29
88 89 4.098960 GCATGTGGATGAGATGGATGTTTT 59.901 41.667 0.00 0.00 0.00 2.43
89 90 3.635373 GCATGTGGATGAGATGGATGTTT 59.365 43.478 0.00 0.00 0.00 2.83
90 91 3.220110 GCATGTGGATGAGATGGATGTT 58.780 45.455 0.00 0.00 0.00 2.71
91 92 2.488528 GGCATGTGGATGAGATGGATGT 60.489 50.000 0.00 0.00 0.00 3.06
92 93 2.160205 GGCATGTGGATGAGATGGATG 58.840 52.381 0.00 0.00 0.00 3.51
93 94 1.075050 GGGCATGTGGATGAGATGGAT 59.925 52.381 0.00 0.00 0.00 3.41
94 95 0.475475 GGGCATGTGGATGAGATGGA 59.525 55.000 0.00 0.00 0.00 3.41
95 96 0.184211 TGGGCATGTGGATGAGATGG 59.816 55.000 0.00 0.00 0.00 3.51
96 97 2.160205 GATGGGCATGTGGATGAGATG 58.840 52.381 0.00 0.00 0.00 2.90
97 98 1.778484 TGATGGGCATGTGGATGAGAT 59.222 47.619 0.00 0.00 0.00 2.75
98 99 1.142262 CTGATGGGCATGTGGATGAGA 59.858 52.381 0.00 0.00 0.00 3.27
99 100 1.133884 ACTGATGGGCATGTGGATGAG 60.134 52.381 0.00 0.00 0.00 2.90
100 101 0.921166 ACTGATGGGCATGTGGATGA 59.079 50.000 0.00 0.00 0.00 2.92
101 102 1.771565 AACTGATGGGCATGTGGATG 58.228 50.000 0.00 0.00 0.00 3.51
102 103 2.381911 GAAACTGATGGGCATGTGGAT 58.618 47.619 0.00 0.00 0.00 3.41
103 104 1.838112 GAAACTGATGGGCATGTGGA 58.162 50.000 0.00 0.00 0.00 4.02
104 105 0.452987 CGAAACTGATGGGCATGTGG 59.547 55.000 0.00 0.00 0.00 4.17
105 106 0.452987 CCGAAACTGATGGGCATGTG 59.547 55.000 0.00 0.00 0.00 3.21
106 107 0.327924 TCCGAAACTGATGGGCATGT 59.672 50.000 0.00 0.00 0.00 3.21
107 108 0.734889 GTCCGAAACTGATGGGCATG 59.265 55.000 0.00 0.00 0.00 4.06
108 109 0.394352 GGTCCGAAACTGATGGGCAT 60.394 55.000 0.00 0.00 0.00 4.40
109 110 1.002624 GGTCCGAAACTGATGGGCA 60.003 57.895 0.00 0.00 0.00 5.36
110 111 1.749258 GGGTCCGAAACTGATGGGC 60.749 63.158 0.00 0.00 0.00 5.36
111 112 0.392998 CTGGGTCCGAAACTGATGGG 60.393 60.000 0.00 0.00 0.00 4.00
112 113 0.613260 TCTGGGTCCGAAACTGATGG 59.387 55.000 0.00 0.00 0.00 3.51
113 114 1.276421 ACTCTGGGTCCGAAACTGATG 59.724 52.381 0.00 0.00 0.00 3.07
114 115 1.550976 GACTCTGGGTCCGAAACTGAT 59.449 52.381 0.00 0.00 38.93 2.90
115 116 0.966920 GACTCTGGGTCCGAAACTGA 59.033 55.000 0.00 0.00 38.93 3.41
116 117 0.969894 AGACTCTGGGTCCGAAACTG 59.030 55.000 3.56 0.00 45.54 3.16
117 118 1.718280 AAGACTCTGGGTCCGAAACT 58.282 50.000 3.56 0.00 45.54 2.66
118 119 2.545537 AAAGACTCTGGGTCCGAAAC 57.454 50.000 3.56 0.00 45.54 2.78
119 120 4.903045 ATTAAAGACTCTGGGTCCGAAA 57.097 40.909 3.56 0.00 45.54 3.46
120 121 5.021458 AGTATTAAAGACTCTGGGTCCGAA 58.979 41.667 3.56 0.00 45.54 4.30
121 122 4.607239 AGTATTAAAGACTCTGGGTCCGA 58.393 43.478 3.56 0.00 45.54 4.55
122 123 5.340439 AAGTATTAAAGACTCTGGGTCCG 57.660 43.478 3.56 0.00 45.54 4.79
123 124 9.163899 CTTAAAAGTATTAAAGACTCTGGGTCC 57.836 37.037 3.56 0.00 45.54 4.46
124 125 9.939802 TCTTAAAAGTATTAAAGACTCTGGGTC 57.060 33.333 0.00 0.00 44.80 4.46
167 168 8.621532 ATGCTACTCTTATGTGAGTTCAAAAA 57.378 30.769 7.56 0.00 44.01 1.94
168 169 9.371136 CTATGCTACTCTTATGTGAGTTCAAAA 57.629 33.333 7.56 1.71 44.01 2.44
169 170 8.749354 TCTATGCTACTCTTATGTGAGTTCAAA 58.251 33.333 7.56 0.00 44.01 2.69
170 171 8.191446 GTCTATGCTACTCTTATGTGAGTTCAA 58.809 37.037 7.56 0.00 44.01 2.69
171 172 7.467403 CGTCTATGCTACTCTTATGTGAGTTCA 60.467 40.741 7.56 7.15 44.01 3.18
172 173 6.853872 CGTCTATGCTACTCTTATGTGAGTTC 59.146 42.308 7.56 2.82 44.01 3.01
221 264 3.286329 TTATCCTAAGGCGGGGTTTTC 57.714 47.619 0.00 0.00 0.00 2.29
226 269 1.339151 GCTGATTATCCTAAGGCGGGG 60.339 57.143 0.00 0.00 0.00 5.73
229 272 3.321497 GTCAGCTGATTATCCTAAGGCG 58.679 50.000 21.47 0.00 0.00 5.52
230 273 3.243907 ACGTCAGCTGATTATCCTAAGGC 60.244 47.826 21.47 0.82 0.00 4.35
248 291 5.408604 ACTTTGTTGATATTGTCCAGACGTC 59.591 40.000 7.70 7.70 0.00 4.34
251 294 7.202016 TCAACTTTGTTGATATTGTCCAGAC 57.798 36.000 8.81 0.00 0.00 3.51
306 349 6.327365 TCAACCTGCTGATCCTTCTATTGATA 59.673 38.462 0.00 0.00 0.00 2.15
355 398 3.003689 AGTTGTTGATTTTCGTCCTGCTG 59.996 43.478 0.00 0.00 0.00 4.41
378 421 3.703001 ACTTGGTATGGTGGAGACTTG 57.297 47.619 0.00 0.00 0.00 3.16
379 422 3.394606 ACAACTTGGTATGGTGGAGACTT 59.605 43.478 0.00 0.00 0.00 3.01
455 498 0.175989 AGCTTCCTGTTAGCGGTAGC 59.824 55.000 1.10 1.10 43.01 3.58
456 499 1.202428 GGAGCTTCCTGTTAGCGGTAG 60.202 57.143 0.00 0.00 43.37 3.18
457 500 0.822164 GGAGCTTCCTGTTAGCGGTA 59.178 55.000 0.00 0.00 43.37 4.02
458 501 1.192146 TGGAGCTTCCTGTTAGCGGT 61.192 55.000 0.00 0.00 43.37 5.68
459 502 0.036388 TTGGAGCTTCCTGTTAGCGG 60.036 55.000 0.00 0.00 43.37 5.52
460 503 2.029838 ATTGGAGCTTCCTGTTAGCG 57.970 50.000 0.00 0.00 43.37 4.26
461 504 4.201822 CGTTTATTGGAGCTTCCTGTTAGC 60.202 45.833 0.00 0.00 37.46 3.09
462 505 4.935808 ACGTTTATTGGAGCTTCCTGTTAG 59.064 41.667 0.00 0.00 37.46 2.34
463 506 4.901868 ACGTTTATTGGAGCTTCCTGTTA 58.098 39.130 0.00 0.00 37.46 2.41
464 507 3.751518 ACGTTTATTGGAGCTTCCTGTT 58.248 40.909 0.00 0.00 37.46 3.16
465 508 3.418684 ACGTTTATTGGAGCTTCCTGT 57.581 42.857 0.00 0.00 37.46 4.00
466 509 4.766404 AAACGTTTATTGGAGCTTCCTG 57.234 40.909 12.83 0.00 37.46 3.86
467 510 4.395231 GCTAAACGTTTATTGGAGCTTCCT 59.605 41.667 20.39 0.00 37.46 3.36
468 511 4.395231 AGCTAAACGTTTATTGGAGCTTCC 59.605 41.667 23.17 3.22 36.96 3.46
469 512 5.447413 GGAGCTAAACGTTTATTGGAGCTTC 60.447 44.000 27.20 23.66 0.00 3.86
557 604 0.249489 CGTAATCCCTCCCAGCGAAG 60.249 60.000 0.00 0.00 0.00 3.79
560 607 0.393077 AATCGTAATCCCTCCCAGCG 59.607 55.000 0.00 0.00 0.00 5.18
562 609 2.434336 TCACAATCGTAATCCCTCCCAG 59.566 50.000 0.00 0.00 0.00 4.45
568 615 7.222611 CCATCAAATTTTCACAATCGTAATCCC 59.777 37.037 0.00 0.00 0.00 3.85
576 623 6.790285 AGTTGCCATCAAATTTTCACAATC 57.210 33.333 0.00 0.00 33.37 2.67
600 647 2.401583 TGCATTCTCACGGCAACTAT 57.598 45.000 0.00 0.00 34.05 2.12
659 706 1.123655 GCTGCAGTTCTGTTTTTCGC 58.876 50.000 16.64 0.00 0.00 4.70
661 708 1.333619 TCCGCTGCAGTTCTGTTTTTC 59.666 47.619 16.64 0.00 0.00 2.29
694 741 5.581126 TGAGCATGGCAAAATTAGTTAGG 57.419 39.130 0.00 0.00 0.00 2.69
702 749 0.978151 TTGGCTGAGCATGGCAAAAT 59.022 45.000 6.82 0.00 44.87 1.82
733 780 4.793071 TGACATTTGCGAACGATTTTCAT 58.207 34.783 0.00 0.00 0.00 2.57
759 806 1.687494 GCCAGCGAACGTGCTAAGAG 61.687 60.000 0.00 0.00 45.23 2.85
763 810 0.174845 AATAGCCAGCGAACGTGCTA 59.825 50.000 5.61 5.61 45.23 3.49
766 813 1.705337 CCCAATAGCCAGCGAACGTG 61.705 60.000 0.00 0.00 0.00 4.49
817 866 3.181493 CCAACTATCCAGACAGCAAATGC 60.181 47.826 0.00 0.00 42.49 3.56
844 893 4.342086 TACAACCGCCCTCCCCCT 62.342 66.667 0.00 0.00 0.00 4.79
863 912 1.136147 GGTCACGTCACGCTCGTAT 59.864 57.895 0.00 0.00 39.55 3.06
913 962 3.686726 CAGTTCATTGTCAGTTAGCTCCC 59.313 47.826 0.00 0.00 0.00 4.30
915 964 5.005203 CGATCAGTTCATTGTCAGTTAGCTC 59.995 44.000 0.00 0.00 0.00 4.09
922 971 3.619929 TGCATCGATCAGTTCATTGTCAG 59.380 43.478 0.00 0.00 0.00 3.51
928 977 4.261072 GCTCAAATGCATCGATCAGTTCAT 60.261 41.667 0.00 0.00 0.00 2.57
1084 1148 2.805099 CCAGCCAAGCTAAGATTCGATC 59.195 50.000 0.00 0.00 36.40 3.69
1190 1254 4.436998 GTGGTCCGTGCCTCCGAG 62.437 72.222 0.00 0.00 0.00 4.63
1304 1368 2.537560 CGGATTCAGCGGCATGGAC 61.538 63.158 1.45 0.00 0.00 4.02
1328 1392 1.226974 CGGCTGTACTGATGTCGGG 60.227 63.158 3.61 0.00 0.00 5.14
1337 1401 1.802337 TTCGTGACTGCGGCTGTACT 61.802 55.000 12.66 0.00 0.00 2.73
1339 1403 1.080772 CTTCGTGACTGCGGCTGTA 60.081 57.895 12.66 0.00 0.00 2.74
1342 1406 3.923563 GAGCTTCGTGACTGCGGCT 62.924 63.158 0.00 0.00 33.44 5.52
1348 1412 2.600769 ACCGGGAGCTTCGTGACT 60.601 61.111 6.32 0.00 0.00 3.41
1745 1815 1.340211 CCTGTACTCCTCTGACTCCGT 60.340 57.143 0.00 0.00 0.00 4.69
1873 1943 3.842923 AGCATCCTCTCGCACGGG 61.843 66.667 0.00 0.00 0.00 5.28
1961 2031 2.833913 CCACTTGCCCAGACCACCT 61.834 63.158 0.00 0.00 0.00 4.00
2004 2074 3.479269 CGACGAAGAAGGCGTGCC 61.479 66.667 1.67 1.67 42.77 5.01
2088 2158 4.517285 TCACATTTGAGAGCCCAGTTATC 58.483 43.478 0.00 0.00 0.00 1.75
2094 2164 2.106338 TCACTTCACATTTGAGAGCCCA 59.894 45.455 0.00 0.00 31.71 5.36
2109 2179 2.415512 GACGGTAGCCAAACATCACTTC 59.584 50.000 0.00 0.00 0.00 3.01
2128 2198 4.214437 CAGTTCTTCAAGCAACGAATGAC 58.786 43.478 0.00 0.00 0.00 3.06
2129 2199 3.876914 ACAGTTCTTCAAGCAACGAATGA 59.123 39.130 0.00 0.00 0.00 2.57
2130 2200 3.970610 CACAGTTCTTCAAGCAACGAATG 59.029 43.478 0.00 0.00 0.00 2.67
2133 2203 1.330521 GCACAGTTCTTCAAGCAACGA 59.669 47.619 0.00 0.00 0.00 3.85
2134 2204 1.331756 AGCACAGTTCTTCAAGCAACG 59.668 47.619 0.00 0.00 0.00 4.10
2136 2206 4.645535 AGATAGCACAGTTCTTCAAGCAA 58.354 39.130 0.00 0.00 0.00 3.91
2137 2207 4.277515 AGATAGCACAGTTCTTCAAGCA 57.722 40.909 0.00 0.00 0.00 3.91
2144 2214 9.757227 GACTGAATTATAAGATAGCACAGTTCT 57.243 33.333 0.00 0.00 36.45 3.01
2145 2215 9.534565 TGACTGAATTATAAGATAGCACAGTTC 57.465 33.333 0.00 0.00 36.45 3.01
2160 2230 9.927081 AGTTTCCATTTCCTATGACTGAATTAT 57.073 29.630 0.00 0.00 0.00 1.28
2161 2231 9.177608 CAGTTTCCATTTCCTATGACTGAATTA 57.822 33.333 0.00 0.00 36.31 1.40
2162 2232 7.890127 TCAGTTTCCATTTCCTATGACTGAATT 59.110 33.333 0.00 0.00 39.23 2.17
2163 2233 7.405292 TCAGTTTCCATTTCCTATGACTGAAT 58.595 34.615 0.00 0.00 39.23 2.57
2164 2234 6.778821 TCAGTTTCCATTTCCTATGACTGAA 58.221 36.000 0.00 0.00 39.23 3.02
2165 2235 6.373005 TCAGTTTCCATTTCCTATGACTGA 57.627 37.500 0.00 0.00 39.70 3.41
2166 2236 7.415989 CCATTCAGTTTCCATTTCCTATGACTG 60.416 40.741 0.00 0.00 35.73 3.51
2167 2237 6.604795 CCATTCAGTTTCCATTTCCTATGACT 59.395 38.462 0.00 0.00 0.00 3.41
2168 2238 6.378280 ACCATTCAGTTTCCATTTCCTATGAC 59.622 38.462 0.00 0.00 0.00 3.06
2169 2239 6.377996 CACCATTCAGTTTCCATTTCCTATGA 59.622 38.462 0.00 0.00 0.00 2.15
2170 2240 6.406177 CCACCATTCAGTTTCCATTTCCTATG 60.406 42.308 0.00 0.00 0.00 2.23
2174 2244 3.617288 GCCACCATTCAGTTTCCATTTCC 60.617 47.826 0.00 0.00 0.00 3.13
2196 2266 5.192327 ACAAGGCTCTGATTGAAAACTTG 57.808 39.130 0.00 0.00 36.58 3.16
2205 2275 6.570378 CGGTTGAAAAATACAAGGCTCTGATT 60.570 38.462 0.00 0.00 0.00 2.57
2206 2276 5.106157 CGGTTGAAAAATACAAGGCTCTGAT 60.106 40.000 0.00 0.00 0.00 2.90
2223 2293 0.105964 CTGTCACTGTCCCGGTTGAA 59.894 55.000 0.00 0.00 0.00 2.69
2224 2294 1.046472 ACTGTCACTGTCCCGGTTGA 61.046 55.000 0.00 0.00 0.00 3.18
2225 2295 0.880278 CACTGTCACTGTCCCGGTTG 60.880 60.000 0.00 0.00 0.00 3.77
2227 2297 2.507854 CCACTGTCACTGTCCCGGT 61.508 63.158 0.00 0.00 0.00 5.28
2228 2298 2.343758 CCACTGTCACTGTCCCGG 59.656 66.667 0.00 0.00 0.00 5.73
2230 2300 1.598130 GCACCACTGTCACTGTCCC 60.598 63.158 0.00 0.00 0.00 4.46
2233 2303 1.119684 TAGTGCACCACTGTCACTGT 58.880 50.000 14.63 0.00 45.01 3.55
2237 2307 3.751175 GCTTTTATAGTGCACCACTGTCA 59.249 43.478 14.63 0.00 45.01 3.58
2276 2346 4.507710 GAAAATCTTGAATTTCAGGGGCC 58.492 43.478 8.47 0.00 35.96 5.80
2280 2350 6.210185 ACCAGAGGAAAATCTTGAATTTCAGG 59.790 38.462 11.69 2.25 37.29 3.86
2283 2353 7.436933 ACAACCAGAGGAAAATCTTGAATTTC 58.563 34.615 3.33 3.33 35.33 2.17
2308 2378 4.943705 AGTCAAGTTCTCTTTTGTCAGCAA 59.056 37.500 0.00 0.00 0.00 3.91
2310 2380 5.986135 TCTAGTCAAGTTCTCTTTTGTCAGC 59.014 40.000 0.00 0.00 0.00 4.26
2320 2405 7.657761 TGTTCATCCTTTTCTAGTCAAGTTCTC 59.342 37.037 0.00 0.00 0.00 2.87
2322 2407 7.095017 CCTGTTCATCCTTTTCTAGTCAAGTTC 60.095 40.741 0.00 0.00 0.00 3.01
2343 2428 5.479375 AGATTGACATTGCTCATTTCCTGTT 59.521 36.000 0.00 0.00 0.00 3.16
2347 2432 4.565564 GCAAGATTGACATTGCTCATTTCC 59.434 41.667 5.23 0.00 46.49 3.13
2366 2451 2.639751 CGGTTTCGTTCTCAAAGCAAG 58.360 47.619 0.00 0.00 31.92 4.01
2377 2462 2.159282 AGATGATCTACGCGGTTTCGTT 60.159 45.455 12.47 0.00 43.15 3.85
2379 2464 2.121116 AGATGATCTACGCGGTTTCG 57.879 50.000 12.47 0.00 39.81 3.46
2384 2469 4.334443 CAAACAAAAGATGATCTACGCGG 58.666 43.478 12.47 0.00 0.00 6.46
2385 2470 4.334443 CCAAACAAAAGATGATCTACGCG 58.666 43.478 3.53 3.53 0.00 6.01
2386 2471 4.156008 ACCCAAACAAAAGATGATCTACGC 59.844 41.667 0.00 0.00 0.00 4.42
2387 2472 5.631026 CACCCAAACAAAAGATGATCTACG 58.369 41.667 0.00 0.00 0.00 3.51
2388 2473 5.183904 AGCACCCAAACAAAAGATGATCTAC 59.816 40.000 0.00 0.00 0.00 2.59
2389 2474 5.183713 CAGCACCCAAACAAAAGATGATCTA 59.816 40.000 0.00 0.00 0.00 1.98
2390 2475 4.021719 CAGCACCCAAACAAAAGATGATCT 60.022 41.667 0.00 0.00 0.00 2.75
2391 2476 4.240096 CAGCACCCAAACAAAAGATGATC 58.760 43.478 0.00 0.00 0.00 2.92
2392 2477 3.007182 CCAGCACCCAAACAAAAGATGAT 59.993 43.478 0.00 0.00 0.00 2.45
2393 2478 2.364970 CCAGCACCCAAACAAAAGATGA 59.635 45.455 0.00 0.00 0.00 2.92
2394 2479 2.102925 ACCAGCACCCAAACAAAAGATG 59.897 45.455 0.00 0.00 0.00 2.90
2395 2480 2.397597 ACCAGCACCCAAACAAAAGAT 58.602 42.857 0.00 0.00 0.00 2.40
2396 2481 1.859302 ACCAGCACCCAAACAAAAGA 58.141 45.000 0.00 0.00 0.00 2.52
2397 2482 3.716601 CTTACCAGCACCCAAACAAAAG 58.283 45.455 0.00 0.00 0.00 2.27
2398 2483 2.159028 GCTTACCAGCACCCAAACAAAA 60.159 45.455 0.00 0.00 46.49 2.44
2399 2484 1.410882 GCTTACCAGCACCCAAACAAA 59.589 47.619 0.00 0.00 46.49 2.83
2400 2485 1.036707 GCTTACCAGCACCCAAACAA 58.963 50.000 0.00 0.00 46.49 2.83
2401 2486 2.727103 GCTTACCAGCACCCAAACA 58.273 52.632 0.00 0.00 46.49 2.83
2411 2496 6.543831 ACTGCCTGATAAATTTAGCTTACCAG 59.456 38.462 14.13 15.00 0.00 4.00
2412 2497 6.423182 ACTGCCTGATAAATTTAGCTTACCA 58.577 36.000 14.13 5.96 0.00 3.25
2413 2498 6.944234 ACTGCCTGATAAATTTAGCTTACC 57.056 37.500 14.13 2.11 0.00 2.85
2414 2499 9.110502 ACTAACTGCCTGATAAATTTAGCTTAC 57.889 33.333 14.13 4.57 0.00 2.34
2416 2501 9.853177 ATACTAACTGCCTGATAAATTTAGCTT 57.147 29.630 14.13 2.51 0.00 3.74
2417 2502 9.853177 AATACTAACTGCCTGATAAATTTAGCT 57.147 29.630 14.13 0.00 0.00 3.32
2418 2503 9.884465 CAATACTAACTGCCTGATAAATTTAGC 57.116 33.333 6.51 6.51 0.00 3.09
2421 2506 9.243105 ACACAATACTAACTGCCTGATAAATTT 57.757 29.630 0.00 0.00 0.00 1.82
2422 2507 8.807948 ACACAATACTAACTGCCTGATAAATT 57.192 30.769 0.00 0.00 0.00 1.82
2423 2508 9.326413 GTACACAATACTAACTGCCTGATAAAT 57.674 33.333 0.00 0.00 0.00 1.40
2424 2509 8.537016 AGTACACAATACTAACTGCCTGATAAA 58.463 33.333 0.00 0.00 0.00 1.40
2425 2510 8.074613 AGTACACAATACTAACTGCCTGATAA 57.925 34.615 0.00 0.00 0.00 1.75
2426 2511 7.655521 AGTACACAATACTAACTGCCTGATA 57.344 36.000 0.00 0.00 0.00 2.15
2427 2512 6.546428 AGTACACAATACTAACTGCCTGAT 57.454 37.500 0.00 0.00 0.00 2.90
2428 2513 5.995565 AGTACACAATACTAACTGCCTGA 57.004 39.130 0.00 0.00 0.00 3.86
2429 2514 6.426937 ACAAAGTACACAATACTAACTGCCTG 59.573 38.462 0.00 0.00 0.00 4.85
2430 2515 6.531021 ACAAAGTACACAATACTAACTGCCT 58.469 36.000 0.00 0.00 0.00 4.75
2431 2516 6.796705 ACAAAGTACACAATACTAACTGCC 57.203 37.500 0.00 0.00 0.00 4.85
2432 2517 7.601508 AGGTACAAAGTACACAATACTAACTGC 59.398 37.037 9.27 0.00 0.00 4.40
2433 2518 9.136952 GAGGTACAAAGTACACAATACTAACTG 57.863 37.037 9.27 0.00 0.00 3.16
2434 2519 8.309656 GGAGGTACAAAGTACACAATACTAACT 58.690 37.037 9.27 0.00 0.00 2.24
2435 2520 7.274250 CGGAGGTACAAAGTACACAATACTAAC 59.726 40.741 9.27 0.00 0.00 2.34
2436 2521 7.176515 TCGGAGGTACAAAGTACACAATACTAA 59.823 37.037 9.27 0.00 0.00 2.24
2437 2522 6.658816 TCGGAGGTACAAAGTACACAATACTA 59.341 38.462 9.27 0.00 0.00 1.82
2438 2523 5.477984 TCGGAGGTACAAAGTACACAATACT 59.522 40.000 9.27 0.00 0.00 2.12
2439 2524 5.713025 TCGGAGGTACAAAGTACACAATAC 58.287 41.667 9.27 0.00 0.00 1.89
2440 2525 5.981088 TCGGAGGTACAAAGTACACAATA 57.019 39.130 9.27 0.00 0.00 1.90
2441 2526 4.877378 TCGGAGGTACAAAGTACACAAT 57.123 40.909 9.27 0.00 0.00 2.71
2442 2527 4.341806 TCTTCGGAGGTACAAAGTACACAA 59.658 41.667 9.27 0.00 0.00 3.33
2443 2528 3.890756 TCTTCGGAGGTACAAAGTACACA 59.109 43.478 9.27 0.00 0.00 3.72
2444 2529 4.510038 TCTTCGGAGGTACAAAGTACAC 57.490 45.455 9.27 3.27 0.00 2.90
2445 2530 4.586001 AGTTCTTCGGAGGTACAAAGTACA 59.414 41.667 9.27 0.00 0.00 2.90
2446 2531 5.131594 AGTTCTTCGGAGGTACAAAGTAC 57.868 43.478 0.00 0.00 0.00 2.73
2447 2532 5.537674 AGAAGTTCTTCGGAGGTACAAAGTA 59.462 40.000 0.00 0.00 0.00 2.24
2448 2533 4.344390 AGAAGTTCTTCGGAGGTACAAAGT 59.656 41.667 0.00 0.00 0.00 2.66
2449 2534 4.884247 AGAAGTTCTTCGGAGGTACAAAG 58.116 43.478 0.00 0.00 0.00 2.77
2450 2535 4.950205 AGAAGTTCTTCGGAGGTACAAA 57.050 40.909 0.00 0.00 0.00 2.83
2451 2536 5.048224 CAGTAGAAGTTCTTCGGAGGTACAA 60.048 44.000 11.40 0.00 0.00 2.41
2452 2537 4.458295 CAGTAGAAGTTCTTCGGAGGTACA 59.542 45.833 11.40 0.00 0.00 2.90
2453 2538 4.674885 GCAGTAGAAGTTCTTCGGAGGTAC 60.675 50.000 11.40 0.26 0.00 3.34
2454 2539 3.442977 GCAGTAGAAGTTCTTCGGAGGTA 59.557 47.826 11.40 0.00 0.00 3.08
2455 2540 2.231721 GCAGTAGAAGTTCTTCGGAGGT 59.768 50.000 11.40 0.00 0.00 3.85
2456 2541 2.494073 AGCAGTAGAAGTTCTTCGGAGG 59.506 50.000 11.40 0.66 0.00 4.30
2457 2542 3.859411 AGCAGTAGAAGTTCTTCGGAG 57.141 47.619 11.40 3.38 0.00 4.63
2458 2543 4.602340 AAAGCAGTAGAAGTTCTTCGGA 57.398 40.909 11.40 0.00 0.00 4.55
2459 2544 5.674933 AAAAAGCAGTAGAAGTTCTTCGG 57.325 39.130 11.40 7.97 0.00 4.30
2460 2545 7.684489 CGATTAAAAAGCAGTAGAAGTTCTTCG 59.316 37.037 11.40 5.60 0.00 3.79
2461 2546 7.478978 GCGATTAAAAAGCAGTAGAAGTTCTTC 59.521 37.037 11.40 6.01 0.00 2.87
2462 2547 7.041372 TGCGATTAAAAAGCAGTAGAAGTTCTT 60.041 33.333 11.40 0.00 35.81 2.52
2463 2548 6.426937 TGCGATTAAAAAGCAGTAGAAGTTCT 59.573 34.615 10.87 10.87 35.81 3.01
2464 2549 6.520104 GTGCGATTAAAAAGCAGTAGAAGTTC 59.480 38.462 0.00 0.00 41.93 3.01
2465 2550 6.017440 TGTGCGATTAAAAAGCAGTAGAAGTT 60.017 34.615 3.58 0.00 41.93 2.66
2466 2551 5.468746 TGTGCGATTAAAAAGCAGTAGAAGT 59.531 36.000 3.58 0.00 41.93 3.01
2467 2552 5.790495 GTGTGCGATTAAAAAGCAGTAGAAG 59.210 40.000 3.58 0.00 41.93 2.85
2468 2553 5.613795 CGTGTGCGATTAAAAAGCAGTAGAA 60.614 40.000 3.58 0.00 41.93 2.10
2469 2554 4.143200 CGTGTGCGATTAAAAAGCAGTAGA 60.143 41.667 3.58 0.00 41.93 2.59
2470 2555 4.081761 CGTGTGCGATTAAAAAGCAGTAG 58.918 43.478 3.58 0.00 41.93 2.57
2471 2556 3.741856 TCGTGTGCGATTAAAAAGCAGTA 59.258 39.130 3.58 0.00 42.81 2.74
2472 2557 2.546368 TCGTGTGCGATTAAAAAGCAGT 59.454 40.909 3.58 0.00 42.81 4.40
2473 2558 3.181826 TCGTGTGCGATTAAAAAGCAG 57.818 42.857 3.58 0.00 42.81 4.24
2484 2569 1.218875 GGTGATGTGTTCGTGTGCGA 61.219 55.000 0.00 0.00 46.36 5.10
2485 2570 1.204062 GGTGATGTGTTCGTGTGCG 59.796 57.895 0.00 0.00 39.92 5.34
2486 2571 1.204062 CGGTGATGTGTTCGTGTGC 59.796 57.895 0.00 0.00 0.00 4.57
2487 2572 0.232046 CACGGTGATGTGTTCGTGTG 59.768 55.000 0.74 0.00 45.15 3.82
2488 2573 2.600388 CACGGTGATGTGTTCGTGT 58.400 52.632 0.74 0.00 45.15 4.49
2495 2580 0.457853 CGAGGGTACACGGTGATGTG 60.458 60.000 16.29 0.00 45.41 3.21
2496 2581 0.609957 TCGAGGGTACACGGTGATGT 60.610 55.000 16.29 0.00 36.56 3.06
2497 2582 0.179145 GTCGAGGGTACACGGTGATG 60.179 60.000 16.29 0.00 0.00 3.07
2498 2583 1.651240 CGTCGAGGGTACACGGTGAT 61.651 60.000 16.29 1.80 0.00 3.06
2499 2584 2.327343 CGTCGAGGGTACACGGTGA 61.327 63.158 16.29 0.00 0.00 4.02
2500 2585 2.177531 CGTCGAGGGTACACGGTG 59.822 66.667 6.58 6.58 0.00 4.94
2501 2586 3.741476 GCGTCGAGGGTACACGGT 61.741 66.667 7.31 0.00 34.04 4.83
2502 2587 4.487412 GGCGTCGAGGGTACACGG 62.487 72.222 7.31 0.00 34.04 4.94
2503 2588 4.487412 GGGCGTCGAGGGTACACG 62.487 72.222 7.31 0.00 36.60 4.49
2504 2589 3.352338 CTGGGCGTCGAGGGTACAC 62.352 68.421 7.31 0.00 0.00 2.90
2505 2590 3.066190 CTGGGCGTCGAGGGTACA 61.066 66.667 7.31 0.00 0.00 2.90
2506 2591 4.509737 GCTGGGCGTCGAGGGTAC 62.510 72.222 7.31 0.00 0.00 3.34
2525 2610 3.401243 CTTGCATTCCGCGCTTCCC 62.401 63.158 5.56 0.00 46.97 3.97
2536 2621 3.576356 CGCCGGATCGCTTGCATT 61.576 61.111 5.05 0.00 0.00 3.56
2545 2633 3.436924 AAAAACGCCCGCCGGATC 61.437 61.111 5.05 0.00 42.52 3.36
2556 2644 0.234884 GTCTCGGCTCCACAAAAACG 59.765 55.000 0.00 0.00 0.00 3.60
2558 2646 1.305201 GTGTCTCGGCTCCACAAAAA 58.695 50.000 0.00 0.00 0.00 1.94
2564 2652 1.913262 ATGTGGTGTCTCGGCTCCA 60.913 57.895 0.00 0.00 0.00 3.86
2568 2656 3.127533 GGCATGTGGTGTCTCGGC 61.128 66.667 0.00 0.00 0.00 5.54
2573 2661 1.741770 GTCTCGGGCATGTGGTGTC 60.742 63.158 0.00 0.00 0.00 3.67
2587 2675 2.190578 CTTGATGGGGGCCGTCTC 59.809 66.667 0.00 0.00 40.04 3.36
2588 2676 3.411517 CCTTGATGGGGGCCGTCT 61.412 66.667 0.00 0.00 40.04 4.18
2622 2710 1.682684 CAGGTCGACCTAGGGCAGT 60.683 63.158 35.80 10.03 46.65 4.40
2636 2724 2.435693 GCACTAGGGGCGATCAGGT 61.436 63.158 0.00 0.00 0.00 4.00
2639 2727 2.041922 AGGCACTAGGGGCGATCA 60.042 61.111 13.61 0.00 36.02 2.92
2642 2730 2.284331 TTGAGGCACTAGGGGCGA 60.284 61.111 13.61 0.51 41.55 5.54
2667 2755 6.365789 TCTTGTTCTTTGTTTGTTCTTTGCAG 59.634 34.615 0.00 0.00 0.00 4.41
2669 2766 6.704512 TCTTGTTCTTTGTTTGTTCTTTGC 57.295 33.333 0.00 0.00 0.00 3.68
2678 2775 9.196552 CTTTGTTCTTCTTCTTGTTCTTTGTTT 57.803 29.630 0.00 0.00 0.00 2.83
2697 2794 3.149981 CCTTGACCTTCTCCCTTTGTTC 58.850 50.000 0.00 0.00 0.00 3.18
2700 2797 2.959465 ACCTTGACCTTCTCCCTTTG 57.041 50.000 0.00 0.00 0.00 2.77
2723 2823 6.535150 ACACACGATCGACAAATCTATCATTT 59.465 34.615 24.34 0.00 29.41 2.32
2726 2826 4.993905 ACACACGATCGACAAATCTATCA 58.006 39.130 24.34 0.00 29.41 2.15
2727 2827 5.288712 ACAACACACGATCGACAAATCTATC 59.711 40.000 24.34 0.00 0.00 2.08
2729 2829 4.552355 ACAACACACGATCGACAAATCTA 58.448 39.130 24.34 0.00 0.00 1.98
2730 2830 3.390135 ACAACACACGATCGACAAATCT 58.610 40.909 24.34 0.00 0.00 2.40
2742 2852 1.660052 CGGCTGATTGAACAACACACG 60.660 52.381 0.00 0.00 0.00 4.49
2758 2868 7.896811 TCATAAATAGATAAGATGTGACGGCT 58.103 34.615 0.00 0.00 0.00 5.52
2796 2906 7.628769 TTTTTAGTCTTTTTCTTGTACGGGT 57.371 32.000 0.00 0.00 0.00 5.28
2811 2921 6.702716 TGTTTTGGACGGAATTTTTAGTCT 57.297 33.333 0.00 0.00 34.34 3.24
2875 2987 3.274288 GGCTCTGAGTTGATCCGAAAAT 58.726 45.455 6.53 0.00 0.00 1.82
2920 3032 8.367660 AGATACAGAAGATTACAGAAGGTTGA 57.632 34.615 0.00 0.00 0.00 3.18
3025 3154 2.807967 CAGAAGTTGCCGAGTCATTTCA 59.192 45.455 0.00 0.00 0.00 2.69
3036 3165 2.576615 AGGTCAGAAACAGAAGTTGCC 58.423 47.619 0.00 0.00 38.17 4.52
3102 3231 6.682863 GTCGAAACCGTTGATTTTGATATGAG 59.317 38.462 0.00 0.00 33.16 2.90
3104 3233 5.447846 CGTCGAAACCGTTGATTTTGATATG 59.552 40.000 0.00 0.00 33.16 1.78
3119 3248 1.155424 TTGTGTGCCTCGTCGAAACC 61.155 55.000 0.00 0.00 0.00 3.27
3131 3260 5.101628 TGTTTCAAGATGAAAGTTGTGTGC 58.898 37.500 5.81 0.00 45.83 4.57
3146 3275 4.563976 GCATCGGATGGAAAATGTTTCAAG 59.436 41.667 18.96 0.00 0.00 3.02
3167 3298 5.394443 GGCATGAAACTCAATTAAGATGGCA 60.394 40.000 0.00 0.00 0.00 4.92
3196 3330 7.720074 AGATGCTCATGTTGACATCAGATTAAT 59.280 33.333 16.46 0.00 37.37 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.