Multiple sequence alignment - TraesCS5B01G231300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G231300 chr5B 100.000 2745 0 0 656 3400 407818575 407815831 0.000000e+00 5070.0
1 TraesCS5B01G231300 chr5B 100.000 267 0 0 1 267 407819230 407818964 8.480000e-136 494.0
2 TraesCS5B01G231300 chr5D 91.960 2388 86 41 656 2995 344398654 344400983 0.000000e+00 3249.0
3 TraesCS5B01G231300 chr5D 91.613 310 8 5 3108 3400 344401157 344401465 2.440000e-111 412.0
4 TraesCS5B01G231300 chr5A 87.846 2057 115 37 656 2645 448089762 448091750 0.000000e+00 2289.0
5 TraesCS5B01G231300 chr5A 81.737 334 14 13 3108 3400 448092467 448092794 5.670000e-58 235.0
6 TraesCS5B01G231300 chr5A 84.722 216 20 8 2763 2969 448092098 448092309 1.600000e-48 204.0
7 TraesCS5B01G231300 chr5A 89.655 58 6 0 3053 3110 448092351 448092408 1.310000e-09 75.0
8 TraesCS5B01G231300 chr2D 87.113 194 19 5 2000 2187 527547519 527547712 7.390000e-52 215.0
9 TraesCS5B01G231300 chr2A 86.979 192 19 5 2002 2187 672415937 672416128 9.560000e-51 211.0
10 TraesCS5B01G231300 chr2B 86.598 194 20 5 2000 2187 624892074 624892267 3.440000e-50 209.0
11 TraesCS5B01G231300 chr4B 89.431 123 13 0 1996 2118 491465480 491465602 4.540000e-34 156.0
12 TraesCS5B01G231300 chr4B 83.200 125 14 6 1592 1715 491464652 491464770 1.290000e-19 108.0
13 TraesCS5B01G231300 chr4A 89.431 123 13 0 1996 2118 56145029 56145151 4.540000e-34 156.0
14 TraesCS5B01G231300 chr4A 85.714 105 12 3 1611 1715 56144271 56144372 1.290000e-19 108.0
15 TraesCS5B01G231300 chr1A 81.773 203 22 10 2002 2189 387840975 387840773 4.540000e-34 156.0
16 TraesCS5B01G231300 chr1A 86.869 99 10 3 1622 1717 387841278 387841180 1.290000e-19 108.0
17 TraesCS5B01G231300 chr7D 79.032 186 36 3 2008 2193 46586041 46585859 1.280000e-24 124.0
18 TraesCS5B01G231300 chr7D 85.366 82 12 0 1794 1875 46670548 46670467 6.040000e-13 86.1
19 TraesCS5B01G231300 chr7D 82.143 84 15 0 1795 1878 46711921 46711838 4.710000e-09 73.1
20 TraesCS5B01G231300 chr1B 88.542 96 11 0 1622 1717 418106316 418106221 2.140000e-22 117.0
21 TraesCS5B01G231300 chr1D 86.869 99 10 3 1622 1717 308459931 308459833 1.290000e-19 108.0
22 TraesCS5B01G231300 chr4D 83.810 105 14 3 1611 1715 398669587 398669688 2.790000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G231300 chr5B 407815831 407819230 3399 True 2782.00 5070 100.0000 1 3400 2 chr5B.!!$R1 3399
1 TraesCS5B01G231300 chr5D 344398654 344401465 2811 False 1830.50 3249 91.7865 656 3400 2 chr5D.!!$F1 2744
2 TraesCS5B01G231300 chr5A 448089762 448092794 3032 False 700.75 2289 85.9900 656 3400 4 chr5A.!!$F1 2744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 178 0.107831 CACTCGTCTCCACCCCAAAA 59.892 55.0 0.00 0.00 0.00 2.44 F
264 265 0.107831 TCCGCCATAAAGAATCGGGG 59.892 55.0 0.00 0.00 40.42 5.73 F
1303 1361 0.527113 TTTGATTCTGCATGCCACGG 59.473 50.0 16.68 2.96 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1309 1367 0.038526 CTACTATTCCGGCGGCGATT 60.039 55.000 34.49 18.50 0.00 3.34 R
1335 1393 1.375140 CAGATCGGATCGCCCCATG 60.375 63.158 12.08 0.79 0.00 3.66 R
2529 2620 0.098200 CGACAGACGCGAATCCACTA 59.902 55.000 15.93 0.00 34.51 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 5.866335 TTTTTGCATTCATCATTCTTGCC 57.134 34.783 0.00 0.00 32.39 4.52
34 35 4.538746 TTTGCATTCATCATTCTTGCCA 57.461 36.364 0.00 0.00 32.39 4.92
35 36 3.513680 TGCATTCATCATTCTTGCCAC 57.486 42.857 0.00 0.00 32.39 5.01
36 37 2.166870 TGCATTCATCATTCTTGCCACC 59.833 45.455 0.00 0.00 32.39 4.61
37 38 2.166870 GCATTCATCATTCTTGCCACCA 59.833 45.455 0.00 0.00 0.00 4.17
38 39 3.181469 GCATTCATCATTCTTGCCACCAT 60.181 43.478 0.00 0.00 0.00 3.55
39 40 4.038282 GCATTCATCATTCTTGCCACCATA 59.962 41.667 0.00 0.00 0.00 2.74
40 41 5.526115 CATTCATCATTCTTGCCACCATAC 58.474 41.667 0.00 0.00 0.00 2.39
41 42 3.554934 TCATCATTCTTGCCACCATACC 58.445 45.455 0.00 0.00 0.00 2.73
42 43 3.053768 TCATCATTCTTGCCACCATACCA 60.054 43.478 0.00 0.00 0.00 3.25
43 44 3.668141 TCATTCTTGCCACCATACCAT 57.332 42.857 0.00 0.00 0.00 3.55
44 45 4.787135 TCATTCTTGCCACCATACCATA 57.213 40.909 0.00 0.00 0.00 2.74
45 46 5.122707 TCATTCTTGCCACCATACCATAA 57.877 39.130 0.00 0.00 0.00 1.90
46 47 5.514169 TCATTCTTGCCACCATACCATAAA 58.486 37.500 0.00 0.00 0.00 1.40
47 48 5.954752 TCATTCTTGCCACCATACCATAAAA 59.045 36.000 0.00 0.00 0.00 1.52
48 49 5.913137 TTCTTGCCACCATACCATAAAAG 57.087 39.130 0.00 0.00 0.00 2.27
49 50 4.929479 TCTTGCCACCATACCATAAAAGT 58.071 39.130 0.00 0.00 0.00 2.66
50 51 6.068461 TCTTGCCACCATACCATAAAAGTA 57.932 37.500 0.00 0.00 0.00 2.24
51 52 6.668645 TCTTGCCACCATACCATAAAAGTAT 58.331 36.000 0.00 0.00 0.00 2.12
52 53 6.545666 TCTTGCCACCATACCATAAAAGTATG 59.454 38.462 4.32 4.32 44.37 2.39
67 68 9.520204 CATAAAAGTATGGAAATGAACACCATC 57.480 33.333 0.00 0.00 42.44 3.51
68 69 5.818136 AAGTATGGAAATGAACACCATCG 57.182 39.130 0.00 0.00 42.44 3.84
69 70 5.097742 AGTATGGAAATGAACACCATCGA 57.902 39.130 0.00 0.00 42.44 3.59
70 71 4.876107 AGTATGGAAATGAACACCATCGAC 59.124 41.667 0.00 0.00 42.44 4.20
71 72 2.073056 TGGAAATGAACACCATCGACG 58.927 47.619 0.00 0.00 33.53 5.12
72 73 2.073816 GGAAATGAACACCATCGACGT 58.926 47.619 0.00 0.00 33.53 4.34
73 74 2.482721 GGAAATGAACACCATCGACGTT 59.517 45.455 0.00 0.00 33.53 3.99
74 75 3.680937 GGAAATGAACACCATCGACGTTA 59.319 43.478 0.00 0.00 33.53 3.18
75 76 4.152759 GGAAATGAACACCATCGACGTTAA 59.847 41.667 0.00 0.00 33.53 2.01
76 77 5.334260 GGAAATGAACACCATCGACGTTAAA 60.334 40.000 0.00 0.00 33.53 1.52
77 78 4.657075 ATGAACACCATCGACGTTAAAC 57.343 40.909 0.00 0.00 0.00 2.01
78 79 3.455327 TGAACACCATCGACGTTAAACA 58.545 40.909 0.00 0.00 0.00 2.83
79 80 3.869832 TGAACACCATCGACGTTAAACAA 59.130 39.130 0.00 0.00 0.00 2.83
80 81 3.865224 ACACCATCGACGTTAAACAAC 57.135 42.857 0.00 0.00 0.00 3.32
99 100 8.748380 AAACAACGAATACTACTACACTAACC 57.252 34.615 0.00 0.00 0.00 2.85
100 101 7.452880 ACAACGAATACTACTACACTAACCA 57.547 36.000 0.00 0.00 0.00 3.67
101 102 8.059798 ACAACGAATACTACTACACTAACCAT 57.940 34.615 0.00 0.00 0.00 3.55
102 103 9.177608 ACAACGAATACTACTACACTAACCATA 57.822 33.333 0.00 0.00 0.00 2.74
103 104 9.661187 CAACGAATACTACTACACTAACCATAG 57.339 37.037 0.00 0.00 35.14 2.23
104 105 7.869800 ACGAATACTACTACACTAACCATAGC 58.130 38.462 0.00 0.00 31.96 2.97
105 106 7.500227 ACGAATACTACTACACTAACCATAGCA 59.500 37.037 0.00 0.00 31.96 3.49
106 107 8.347771 CGAATACTACTACACTAACCATAGCAA 58.652 37.037 0.00 0.00 31.96 3.91
107 108 9.460906 GAATACTACTACACTAACCATAGCAAC 57.539 37.037 0.00 0.00 31.96 4.17
108 109 5.888105 ACTACTACACTAACCATAGCAACG 58.112 41.667 0.00 0.00 31.96 4.10
109 110 5.649395 ACTACTACACTAACCATAGCAACGA 59.351 40.000 0.00 0.00 31.96 3.85
110 111 5.395682 ACTACACTAACCATAGCAACGAA 57.604 39.130 0.00 0.00 31.96 3.85
111 112 5.786311 ACTACACTAACCATAGCAACGAAA 58.214 37.500 0.00 0.00 31.96 3.46
112 113 6.225318 ACTACACTAACCATAGCAACGAAAA 58.775 36.000 0.00 0.00 31.96 2.29
113 114 6.877322 ACTACACTAACCATAGCAACGAAAAT 59.123 34.615 0.00 0.00 31.96 1.82
114 115 6.569179 ACACTAACCATAGCAACGAAAATT 57.431 33.333 0.00 0.00 31.96 1.82
115 116 6.977213 ACACTAACCATAGCAACGAAAATTT 58.023 32.000 0.00 0.00 31.96 1.82
116 117 7.430441 ACACTAACCATAGCAACGAAAATTTT 58.570 30.769 2.28 2.28 31.96 1.82
117 118 7.381139 ACACTAACCATAGCAACGAAAATTTTG 59.619 33.333 8.47 3.68 31.96 2.44
122 123 1.587547 GCAACGAAAATTTTGCCCCA 58.412 45.000 8.47 0.00 41.95 4.96
123 124 2.150390 GCAACGAAAATTTTGCCCCAT 58.850 42.857 8.47 0.00 41.95 4.00
124 125 2.551887 GCAACGAAAATTTTGCCCCATT 59.448 40.909 8.47 0.00 41.95 3.16
125 126 3.608941 GCAACGAAAATTTTGCCCCATTG 60.609 43.478 8.47 0.21 41.95 2.82
126 127 3.483808 ACGAAAATTTTGCCCCATTGT 57.516 38.095 8.47 0.00 0.00 2.71
127 128 3.137533 ACGAAAATTTTGCCCCATTGTG 58.862 40.909 8.47 0.00 0.00 3.33
128 129 2.095819 CGAAAATTTTGCCCCATTGTGC 60.096 45.455 8.47 0.00 0.00 4.57
129 130 2.653234 AAATTTTGCCCCATTGTGCA 57.347 40.000 0.00 0.00 35.27 4.57
130 131 2.653234 AATTTTGCCCCATTGTGCAA 57.347 40.000 6.72 6.72 45.12 4.08
131 132 1.894881 ATTTTGCCCCATTGTGCAAC 58.105 45.000 9.56 0.00 46.32 4.17
147 148 4.942765 GTGCAACAACTTCGTAGTATGAC 58.057 43.478 0.00 0.00 36.32 3.06
148 149 3.991773 TGCAACAACTTCGTAGTATGACC 59.008 43.478 0.00 0.00 33.17 4.02
149 150 3.370061 GCAACAACTTCGTAGTATGACCC 59.630 47.826 0.00 0.00 33.17 4.46
150 151 4.817517 CAACAACTTCGTAGTATGACCCT 58.182 43.478 0.00 0.00 33.17 4.34
151 152 5.622914 GCAACAACTTCGTAGTATGACCCTA 60.623 44.000 0.00 0.00 33.17 3.53
152 153 5.831702 ACAACTTCGTAGTATGACCCTAG 57.168 43.478 0.00 0.00 33.17 3.02
153 154 5.503927 ACAACTTCGTAGTATGACCCTAGA 58.496 41.667 0.00 0.00 33.17 2.43
154 155 5.948162 ACAACTTCGTAGTATGACCCTAGAA 59.052 40.000 0.00 0.00 33.17 2.10
155 156 6.606395 ACAACTTCGTAGTATGACCCTAGAAT 59.394 38.462 0.00 0.00 33.17 2.40
156 157 6.880942 ACTTCGTAGTATGACCCTAGAATC 57.119 41.667 0.00 0.00 31.21 2.52
157 158 6.603224 ACTTCGTAGTATGACCCTAGAATCT 58.397 40.000 0.00 0.00 31.21 2.40
158 159 6.711645 ACTTCGTAGTATGACCCTAGAATCTC 59.288 42.308 0.00 0.00 31.21 2.75
159 160 6.183810 TCGTAGTATGACCCTAGAATCTCA 57.816 41.667 0.00 0.00 0.00 3.27
160 161 5.996513 TCGTAGTATGACCCTAGAATCTCAC 59.003 44.000 0.00 0.00 0.00 3.51
161 162 5.998981 CGTAGTATGACCCTAGAATCTCACT 59.001 44.000 0.00 0.00 0.00 3.41
162 163 6.148150 CGTAGTATGACCCTAGAATCTCACTC 59.852 46.154 0.00 0.00 0.00 3.51
163 164 5.067273 AGTATGACCCTAGAATCTCACTCG 58.933 45.833 0.00 0.00 0.00 4.18
164 165 3.367646 TGACCCTAGAATCTCACTCGT 57.632 47.619 0.00 0.00 0.00 4.18
165 166 3.280295 TGACCCTAGAATCTCACTCGTC 58.720 50.000 0.00 0.00 0.00 4.20
166 167 3.054287 TGACCCTAGAATCTCACTCGTCT 60.054 47.826 0.00 0.00 0.00 4.18
167 168 3.547746 ACCCTAGAATCTCACTCGTCTC 58.452 50.000 0.00 0.00 0.00 3.36
168 169 2.882137 CCCTAGAATCTCACTCGTCTCC 59.118 54.545 0.00 0.00 0.00 3.71
169 170 3.546724 CCTAGAATCTCACTCGTCTCCA 58.453 50.000 0.00 0.00 0.00 3.86
170 171 3.314080 CCTAGAATCTCACTCGTCTCCAC 59.686 52.174 0.00 0.00 0.00 4.02
171 172 2.096248 AGAATCTCACTCGTCTCCACC 58.904 52.381 0.00 0.00 0.00 4.61
172 173 1.135333 GAATCTCACTCGTCTCCACCC 59.865 57.143 0.00 0.00 0.00 4.61
173 174 0.684805 ATCTCACTCGTCTCCACCCC 60.685 60.000 0.00 0.00 0.00 4.95
174 175 1.606601 CTCACTCGTCTCCACCCCA 60.607 63.158 0.00 0.00 0.00 4.96
175 176 1.152419 TCACTCGTCTCCACCCCAA 60.152 57.895 0.00 0.00 0.00 4.12
176 177 0.761323 TCACTCGTCTCCACCCCAAA 60.761 55.000 0.00 0.00 0.00 3.28
177 178 0.107831 CACTCGTCTCCACCCCAAAA 59.892 55.000 0.00 0.00 0.00 2.44
178 179 1.064825 ACTCGTCTCCACCCCAAAAT 58.935 50.000 0.00 0.00 0.00 1.82
179 180 1.423921 ACTCGTCTCCACCCCAAAATT 59.576 47.619 0.00 0.00 0.00 1.82
180 181 2.640826 ACTCGTCTCCACCCCAAAATTA 59.359 45.455 0.00 0.00 0.00 1.40
181 182 3.007635 CTCGTCTCCACCCCAAAATTAC 58.992 50.000 0.00 0.00 0.00 1.89
182 183 1.735571 CGTCTCCACCCCAAAATTACG 59.264 52.381 0.00 0.00 0.00 3.18
183 184 2.613474 CGTCTCCACCCCAAAATTACGA 60.613 50.000 0.00 0.00 0.00 3.43
184 185 3.007635 GTCTCCACCCCAAAATTACGAG 58.992 50.000 0.00 0.00 0.00 4.18
185 186 2.640826 TCTCCACCCCAAAATTACGAGT 59.359 45.455 0.00 0.00 0.00 4.18
186 187 3.007635 CTCCACCCCAAAATTACGAGTC 58.992 50.000 0.00 0.00 0.00 3.36
187 188 2.089201 CCACCCCAAAATTACGAGTCC 58.911 52.381 0.00 0.00 0.00 3.85
188 189 2.553466 CCACCCCAAAATTACGAGTCCA 60.553 50.000 0.00 0.00 0.00 4.02
189 190 3.352648 CACCCCAAAATTACGAGTCCAT 58.647 45.455 0.00 0.00 0.00 3.41
190 191 3.128589 CACCCCAAAATTACGAGTCCATG 59.871 47.826 0.00 0.00 0.00 3.66
191 192 2.099098 CCCCAAAATTACGAGTCCATGC 59.901 50.000 0.00 0.00 0.00 4.06
192 193 3.016736 CCCAAAATTACGAGTCCATGCT 58.983 45.455 0.00 0.00 0.00 3.79
193 194 4.196193 CCCAAAATTACGAGTCCATGCTA 58.804 43.478 0.00 0.00 0.00 3.49
194 195 4.035208 CCCAAAATTACGAGTCCATGCTAC 59.965 45.833 0.00 0.00 0.00 3.58
195 196 4.260212 CCAAAATTACGAGTCCATGCTACG 60.260 45.833 0.00 0.00 0.00 3.51
196 197 3.795623 AATTACGAGTCCATGCTACGT 57.204 42.857 0.00 0.00 40.23 3.57
197 198 4.906065 AATTACGAGTCCATGCTACGTA 57.094 40.909 0.00 0.00 38.18 3.57
198 199 3.680642 TTACGAGTCCATGCTACGTAC 57.319 47.619 0.00 0.00 38.74 3.67
199 200 1.747709 ACGAGTCCATGCTACGTACT 58.252 50.000 0.00 0.00 35.49 2.73
200 201 1.400846 ACGAGTCCATGCTACGTACTG 59.599 52.381 0.00 0.00 35.49 2.74
201 202 1.841450 GAGTCCATGCTACGTACTGC 58.159 55.000 0.00 0.00 0.00 4.40
202 203 1.405821 GAGTCCATGCTACGTACTGCT 59.594 52.381 8.13 0.00 0.00 4.24
203 204 1.135139 AGTCCATGCTACGTACTGCTG 59.865 52.381 8.13 4.53 0.00 4.41
204 205 0.179111 TCCATGCTACGTACTGCTGC 60.179 55.000 8.13 2.96 0.00 5.25
205 206 1.482621 CCATGCTACGTACTGCTGCG 61.483 60.000 8.13 0.00 0.00 5.18
206 207 1.878522 ATGCTACGTACTGCTGCGC 60.879 57.895 0.00 0.00 0.00 6.09
207 208 3.607987 GCTACGTACTGCTGCGCG 61.608 66.667 0.00 0.00 0.00 6.86
208 209 2.949678 CTACGTACTGCTGCGCGG 60.950 66.667 13.18 13.18 41.29 6.46
210 211 3.271706 TACGTACTGCTGCGCGGTT 62.272 57.895 19.23 5.21 46.97 4.44
211 212 3.838795 CGTACTGCTGCGCGGTTC 61.839 66.667 19.23 12.75 46.97 3.62
212 213 3.488090 GTACTGCTGCGCGGTTCC 61.488 66.667 19.23 1.19 46.97 3.62
213 214 3.997397 TACTGCTGCGCGGTTCCA 61.997 61.111 19.23 6.47 46.97 3.53
214 215 3.932580 TACTGCTGCGCGGTTCCAG 62.933 63.158 19.23 18.24 46.97 3.86
222 223 4.373116 GCGGTTCCAGGTCGAGCA 62.373 66.667 18.15 0.00 0.00 4.26
223 224 2.125912 CGGTTCCAGGTCGAGCAG 60.126 66.667 18.15 8.91 0.00 4.24
224 225 2.636412 CGGTTCCAGGTCGAGCAGA 61.636 63.158 18.15 10.29 0.00 4.26
233 234 2.643272 TCGAGCAGACACGACCAC 59.357 61.111 0.00 0.00 33.83 4.16
234 235 2.801162 CGAGCAGACACGACCACG 60.801 66.667 0.00 0.00 45.75 4.94
235 236 2.643272 GAGCAGACACGACCACGA 59.357 61.111 0.00 0.00 42.66 4.35
236 237 1.442857 GAGCAGACACGACCACGAG 60.443 63.158 0.00 0.00 42.66 4.18
237 238 1.853114 GAGCAGACACGACCACGAGA 61.853 60.000 0.00 0.00 42.66 4.04
238 239 1.729838 GCAGACACGACCACGAGAC 60.730 63.158 0.00 0.00 42.66 3.36
239 240 1.652563 CAGACACGACCACGAGACA 59.347 57.895 0.00 0.00 42.66 3.41
240 241 0.386100 CAGACACGACCACGAGACAG 60.386 60.000 0.00 0.00 42.66 3.51
241 242 0.534427 AGACACGACCACGAGACAGA 60.534 55.000 0.00 0.00 42.66 3.41
242 243 0.309922 GACACGACCACGAGACAGAA 59.690 55.000 0.00 0.00 42.66 3.02
243 244 0.742505 ACACGACCACGAGACAGAAA 59.257 50.000 0.00 0.00 42.66 2.52
244 245 1.340248 ACACGACCACGAGACAGAAAT 59.660 47.619 0.00 0.00 42.66 2.17
245 246 2.223971 ACACGACCACGAGACAGAAATT 60.224 45.455 0.00 0.00 42.66 1.82
246 247 2.408704 CACGACCACGAGACAGAAATTC 59.591 50.000 0.00 0.00 42.66 2.17
247 248 1.993370 CGACCACGAGACAGAAATTCC 59.007 52.381 0.00 0.00 42.66 3.01
248 249 1.993370 GACCACGAGACAGAAATTCCG 59.007 52.381 0.00 0.00 0.00 4.30
249 250 0.721718 CCACGAGACAGAAATTCCGC 59.278 55.000 0.00 0.00 0.00 5.54
250 251 0.721718 CACGAGACAGAAATTCCGCC 59.278 55.000 0.00 0.00 0.00 6.13
251 252 0.320374 ACGAGACAGAAATTCCGCCA 59.680 50.000 0.00 0.00 0.00 5.69
252 253 1.066143 ACGAGACAGAAATTCCGCCAT 60.066 47.619 0.00 0.00 0.00 4.40
253 254 2.167693 ACGAGACAGAAATTCCGCCATA 59.832 45.455 0.00 0.00 0.00 2.74
254 255 3.194861 CGAGACAGAAATTCCGCCATAA 58.805 45.455 0.00 0.00 0.00 1.90
255 256 3.621268 CGAGACAGAAATTCCGCCATAAA 59.379 43.478 0.00 0.00 0.00 1.40
256 257 4.260375 CGAGACAGAAATTCCGCCATAAAG 60.260 45.833 0.00 0.00 0.00 1.85
257 258 4.843728 AGACAGAAATTCCGCCATAAAGA 58.156 39.130 0.00 0.00 0.00 2.52
258 259 5.253330 AGACAGAAATTCCGCCATAAAGAA 58.747 37.500 0.00 0.00 0.00 2.52
259 260 5.888161 AGACAGAAATTCCGCCATAAAGAAT 59.112 36.000 0.00 0.00 0.00 2.40
260 261 6.038714 AGACAGAAATTCCGCCATAAAGAATC 59.961 38.462 0.00 0.00 30.06 2.52
261 262 5.207768 CAGAAATTCCGCCATAAAGAATCG 58.792 41.667 0.00 0.00 30.06 3.34
262 263 4.275936 AGAAATTCCGCCATAAAGAATCGG 59.724 41.667 0.00 0.00 41.30 4.18
263 264 1.961793 TTCCGCCATAAAGAATCGGG 58.038 50.000 0.00 0.00 40.42 5.14
264 265 0.107831 TCCGCCATAAAGAATCGGGG 59.892 55.000 0.00 0.00 40.42 5.73
265 266 0.889186 CCGCCATAAAGAATCGGGGG 60.889 60.000 0.00 0.00 44.19 5.40
871 877 6.873605 GCCATTATAGCTCACATACACATACA 59.126 38.462 0.00 0.00 0.00 2.29
926 950 0.841289 CCGCCCCTATAAAACCTCCA 59.159 55.000 0.00 0.00 0.00 3.86
987 1011 3.077556 CCGTCCTGCTGGTAGGCT 61.078 66.667 9.73 0.00 37.76 4.58
988 1012 2.660064 CCGTCCTGCTGGTAGGCTT 61.660 63.158 9.73 0.00 37.76 4.35
989 1013 1.296715 CGTCCTGCTGGTAGGCTTT 59.703 57.895 9.73 0.00 37.76 3.51
1109 1156 4.179599 GGAGGAGGGGAGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
1117 1164 3.174265 GGAGGAGGGGCCAGGATG 61.174 72.222 4.39 0.00 40.02 3.51
1118 1165 2.367512 GAGGAGGGGCCAGGATGT 60.368 66.667 4.39 0.00 40.02 3.06
1119 1166 2.367512 AGGAGGGGCCAGGATGTC 60.368 66.667 4.39 0.00 40.02 3.06
1258 1310 2.011947 GCAGTGAGTGATGCATGCTTA 58.988 47.619 20.33 0.00 42.11 3.09
1275 1327 5.585820 TGCTTACCTTTTCTTTTCCGTTT 57.414 34.783 0.00 0.00 0.00 3.60
1276 1328 5.584442 TGCTTACCTTTTCTTTTCCGTTTC 58.416 37.500 0.00 0.00 0.00 2.78
1288 1340 5.825679 TCTTTTCCGTTTCTCTTGGATTTGA 59.174 36.000 0.00 0.00 0.00 2.69
1300 1358 2.458620 TGGATTTGATTCTGCATGCCA 58.541 42.857 16.68 1.80 0.00 4.92
1303 1361 0.527113 TTTGATTCTGCATGCCACGG 59.473 50.000 16.68 2.96 0.00 4.94
1309 1367 1.750018 CTGCATGCCACGGGATGAA 60.750 57.895 20.50 9.86 45.01 2.57
1335 1393 1.854227 GCCGGAATAGTAGTGCTGAC 58.146 55.000 5.05 0.00 0.00 3.51
1337 1395 2.224066 GCCGGAATAGTAGTGCTGACAT 60.224 50.000 5.05 0.00 0.00 3.06
1354 1412 3.245668 ATGGGGCGATCCGATCTGC 62.246 63.158 13.51 13.51 36.01 4.26
1723 1794 0.676466 TCAACCCCGTAAGCATGCAG 60.676 55.000 21.98 7.95 0.00 4.41
1735 1806 2.786777 AGCATGCAGATCAAACACAGA 58.213 42.857 21.98 0.00 0.00 3.41
1741 1812 2.665537 GCAGATCAAACACAGAGACGAG 59.334 50.000 0.00 0.00 0.00 4.18
1743 1814 1.651138 GATCAAACACAGAGACGAGCG 59.349 52.381 0.00 0.00 0.00 5.03
1909 1982 7.038048 GCCATGAAATCCTTTTCTTTTCCTAG 58.962 38.462 0.00 0.00 41.54 3.02
1991 2070 4.025401 CGCGCTCGCTTTGGGTTT 62.025 61.111 5.56 0.00 39.32 3.27
2171 2250 3.402681 ACCCTCTCCATGTGCCCG 61.403 66.667 0.00 0.00 0.00 6.13
2370 2452 4.101448 CCTCGTCCCAGCCCCAAG 62.101 72.222 0.00 0.00 0.00 3.61
2441 2527 0.027586 GGCCTGCTTGTAAATACGCG 59.972 55.000 3.53 3.53 0.00 6.01
2505 2596 3.470888 CCATTCGCCGAGGGGTCT 61.471 66.667 6.09 0.00 34.97 3.85
2529 2620 0.332972 GAAATGAGAACCCCAGCCCT 59.667 55.000 0.00 0.00 0.00 5.19
2571 2662 0.179108 GATTTGCTACTCCGACGGCT 60.179 55.000 9.66 0.00 0.00 5.52
2645 2740 3.691575 TCTCCGTGCATTTTCCCATTTA 58.308 40.909 0.00 0.00 0.00 1.40
2646 2741 4.277476 TCTCCGTGCATTTTCCCATTTAT 58.723 39.130 0.00 0.00 0.00 1.40
2648 2743 5.888724 TCTCCGTGCATTTTCCCATTTATTA 59.111 36.000 0.00 0.00 0.00 0.98
2649 2744 6.549364 TCTCCGTGCATTTTCCCATTTATTAT 59.451 34.615 0.00 0.00 0.00 1.28
2650 2745 7.069331 TCTCCGTGCATTTTCCCATTTATTATT 59.931 33.333 0.00 0.00 0.00 1.40
2651 2746 8.239038 TCCGTGCATTTTCCCATTTATTATTA 57.761 30.769 0.00 0.00 0.00 0.98
2652 2747 8.138712 TCCGTGCATTTTCCCATTTATTATTAC 58.861 33.333 0.00 0.00 0.00 1.89
2653 2748 7.923344 CCGTGCATTTTCCCATTTATTATTACA 59.077 33.333 0.00 0.00 0.00 2.41
2654 2749 8.967218 CGTGCATTTTCCCATTTATTATTACAG 58.033 33.333 0.00 0.00 0.00 2.74
2865 3205 2.658707 GCCGAGAGCGTGTGTTCAC 61.659 63.158 0.00 0.00 40.79 3.18
2912 3275 3.650139 TCTTTACTGGAGTGAAAGCGTC 58.350 45.455 0.00 0.00 31.55 5.19
2915 3278 0.603569 ACTGGAGTGAAAGCGTCGAT 59.396 50.000 0.00 0.00 0.00 3.59
2916 3279 1.816835 ACTGGAGTGAAAGCGTCGATA 59.183 47.619 0.00 0.00 0.00 2.92
2917 3280 2.186076 CTGGAGTGAAAGCGTCGATAC 58.814 52.381 0.00 0.00 0.00 2.24
2986 3358 4.525100 TGTGTGCTCAACCATACTACTACA 59.475 41.667 0.00 0.00 0.00 2.74
2988 3360 5.929992 GTGTGCTCAACCATACTACTACAAA 59.070 40.000 0.00 0.00 0.00 2.83
2989 3361 5.929992 TGTGCTCAACCATACTACTACAAAC 59.070 40.000 0.00 0.00 0.00 2.93
2990 3362 6.164176 GTGCTCAACCATACTACTACAAACT 58.836 40.000 0.00 0.00 0.00 2.66
2991 3363 7.039574 TGTGCTCAACCATACTACTACAAACTA 60.040 37.037 0.00 0.00 0.00 2.24
2992 3364 7.275123 GTGCTCAACCATACTACTACAAACTAC 59.725 40.741 0.00 0.00 0.00 2.73
2993 3365 7.177921 TGCTCAACCATACTACTACAAACTACT 59.822 37.037 0.00 0.00 0.00 2.57
2994 3366 8.680903 GCTCAACCATACTACTACAAACTACTA 58.319 37.037 0.00 0.00 0.00 1.82
2996 3368 9.745018 TCAACCATACTACTACAAACTACTACT 57.255 33.333 0.00 0.00 0.00 2.57
2998 3370 8.744568 ACCATACTACTACAAACTACTACTCC 57.255 38.462 0.00 0.00 0.00 3.85
2999 3371 7.497249 ACCATACTACTACAAACTACTACTCCG 59.503 40.741 0.00 0.00 0.00 4.63
3000 3372 7.712639 CCATACTACTACAAACTACTACTCCGA 59.287 40.741 0.00 0.00 0.00 4.55
3001 3373 6.976636 ACTACTACAAACTACTACTCCGAC 57.023 41.667 0.00 0.00 0.00 4.79
3002 3374 6.706295 ACTACTACAAACTACTACTCCGACT 58.294 40.000 0.00 0.00 0.00 4.18
3004 3376 4.940654 ACTACAAACTACTACTCCGACTCC 59.059 45.833 0.00 0.00 0.00 3.85
3005 3377 3.087781 ACAAACTACTACTCCGACTCCC 58.912 50.000 0.00 0.00 0.00 4.30
3006 3378 2.035530 AACTACTACTCCGACTCCCG 57.964 55.000 0.00 0.00 38.18 5.14
3007 3379 0.908198 ACTACTACTCCGACTCCCGT 59.092 55.000 0.00 0.00 36.31 5.28
3010 3382 0.615331 ACTACTCCGACTCCCGTACA 59.385 55.000 0.00 0.00 36.31 2.90
3011 3383 1.003580 ACTACTCCGACTCCCGTACAA 59.996 52.381 0.00 0.00 36.31 2.41
3012 3384 2.086869 CTACTCCGACTCCCGTACAAA 58.913 52.381 0.00 0.00 36.31 2.83
3013 3385 0.600057 ACTCCGACTCCCGTACAAAC 59.400 55.000 0.00 0.00 36.31 2.93
3014 3386 0.886563 CTCCGACTCCCGTACAAACT 59.113 55.000 0.00 0.00 36.31 2.66
3015 3387 2.086869 CTCCGACTCCCGTACAAACTA 58.913 52.381 0.00 0.00 36.31 2.24
3016 3388 1.812571 TCCGACTCCCGTACAAACTAC 59.187 52.381 0.00 0.00 36.31 2.73
3017 3389 1.135286 CCGACTCCCGTACAAACTACC 60.135 57.143 0.00 0.00 36.31 3.18
3029 3422 6.011277 CGTACAAACTACCGAAGCAAAATAC 58.989 40.000 0.00 0.00 0.00 1.89
3030 3423 6.128742 CGTACAAACTACCGAAGCAAAATACT 60.129 38.462 0.00 0.00 0.00 2.12
3031 3424 7.062138 CGTACAAACTACCGAAGCAAAATACTA 59.938 37.037 0.00 0.00 0.00 1.82
3032 3425 7.125536 ACAAACTACCGAAGCAAAATACTAC 57.874 36.000 0.00 0.00 0.00 2.73
3033 3426 6.932960 ACAAACTACCGAAGCAAAATACTACT 59.067 34.615 0.00 0.00 0.00 2.57
3034 3427 8.090214 ACAAACTACCGAAGCAAAATACTACTA 58.910 33.333 0.00 0.00 0.00 1.82
3035 3428 8.378421 CAAACTACCGAAGCAAAATACTACTAC 58.622 37.037 0.00 0.00 0.00 2.73
3036 3429 6.567959 ACTACCGAAGCAAAATACTACTACC 58.432 40.000 0.00 0.00 0.00 3.18
3037 3430 4.763073 ACCGAAGCAAAATACTACTACCC 58.237 43.478 0.00 0.00 0.00 3.69
3038 3431 4.124970 CCGAAGCAAAATACTACTACCCC 58.875 47.826 0.00 0.00 0.00 4.95
3039 3432 3.800506 CGAAGCAAAATACTACTACCCCG 59.199 47.826 0.00 0.00 0.00 5.73
3040 3433 4.678840 CGAAGCAAAATACTACTACCCCGT 60.679 45.833 0.00 0.00 0.00 5.28
3041 3434 4.397481 AGCAAAATACTACTACCCCGTC 57.603 45.455 0.00 0.00 0.00 4.79
3042 3435 3.133542 AGCAAAATACTACTACCCCGTCC 59.866 47.826 0.00 0.00 0.00 4.79
3043 3436 3.742327 GCAAAATACTACTACCCCGTCCC 60.742 52.174 0.00 0.00 0.00 4.46
3044 3437 3.403228 AAATACTACTACCCCGTCCCA 57.597 47.619 0.00 0.00 0.00 4.37
3045 3438 3.625252 AATACTACTACCCCGTCCCAT 57.375 47.619 0.00 0.00 0.00 4.00
3046 3439 4.747265 AATACTACTACCCCGTCCCATA 57.253 45.455 0.00 0.00 0.00 2.74
3050 3443 1.430992 ACTACCCCGTCCCATAATGG 58.569 55.000 0.00 0.00 37.25 3.16
3059 3452 2.456577 GTCCCATAATGGTGCCAAGTT 58.543 47.619 0.00 0.00 35.17 2.66
3061 3454 1.756538 CCCATAATGGTGCCAAGTTCC 59.243 52.381 0.00 0.00 35.17 3.62
3062 3455 1.405105 CCATAATGGTGCCAAGTTCCG 59.595 52.381 0.00 0.00 31.35 4.30
3067 3464 3.976758 GTGCCAAGTTCCGGTACC 58.023 61.111 7.70 0.16 33.41 3.34
3105 3502 3.609175 GCGTATGAACAATGCAACAGTGT 60.609 43.478 0.00 0.00 44.59 3.55
3127 3585 1.004560 CGCAGGAGCTGTCAAGGAA 60.005 57.895 0.00 0.00 39.10 3.36
3130 3588 2.484417 CGCAGGAGCTGTCAAGGAATAT 60.484 50.000 0.00 0.00 39.10 1.28
3195 3673 0.989212 ATGCCCATTACCGTACCCCA 60.989 55.000 0.00 0.00 0.00 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 5.179742 GTGGCAAGAATGATGAATGCAAAAA 59.820 36.000 0.00 0.00 38.73 1.94
12 13 4.691685 GTGGCAAGAATGATGAATGCAAAA 59.308 37.500 0.00 0.00 38.73 2.44
13 14 4.247258 GTGGCAAGAATGATGAATGCAAA 58.753 39.130 0.00 0.00 38.73 3.68
14 15 3.368635 GGTGGCAAGAATGATGAATGCAA 60.369 43.478 0.00 0.00 38.73 4.08
15 16 2.166870 GGTGGCAAGAATGATGAATGCA 59.833 45.455 0.00 0.00 38.73 3.96
16 17 2.166870 TGGTGGCAAGAATGATGAATGC 59.833 45.455 0.00 0.00 36.31 3.56
17 18 4.665833 ATGGTGGCAAGAATGATGAATG 57.334 40.909 0.00 0.00 0.00 2.67
18 19 4.586001 GGTATGGTGGCAAGAATGATGAAT 59.414 41.667 0.00 0.00 0.00 2.57
19 20 3.953612 GGTATGGTGGCAAGAATGATGAA 59.046 43.478 0.00 0.00 0.00 2.57
20 21 3.053768 TGGTATGGTGGCAAGAATGATGA 60.054 43.478 0.00 0.00 0.00 2.92
21 22 3.289836 TGGTATGGTGGCAAGAATGATG 58.710 45.455 0.00 0.00 0.00 3.07
22 23 3.668141 TGGTATGGTGGCAAGAATGAT 57.332 42.857 0.00 0.00 0.00 2.45
23 24 3.668141 ATGGTATGGTGGCAAGAATGA 57.332 42.857 0.00 0.00 0.00 2.57
24 25 5.850557 TTTATGGTATGGTGGCAAGAATG 57.149 39.130 0.00 0.00 0.00 2.67
25 26 5.957774 ACTTTTATGGTATGGTGGCAAGAAT 59.042 36.000 0.00 0.00 0.00 2.40
26 27 5.329399 ACTTTTATGGTATGGTGGCAAGAA 58.671 37.500 0.00 0.00 0.00 2.52
27 28 4.929479 ACTTTTATGGTATGGTGGCAAGA 58.071 39.130 0.00 0.00 0.00 3.02
28 29 6.738114 CATACTTTTATGGTATGGTGGCAAG 58.262 40.000 0.00 0.00 41.37 4.01
29 30 6.707440 CATACTTTTATGGTATGGTGGCAA 57.293 37.500 0.00 0.00 41.37 4.52
40 41 8.477256 ATGGTGTTCATTTCCATACTTTTATGG 58.523 33.333 4.54 4.54 43.54 2.74
41 42 9.520204 GATGGTGTTCATTTCCATACTTTTATG 57.480 33.333 0.00 0.00 41.33 1.90
42 43 8.405531 CGATGGTGTTCATTTCCATACTTTTAT 58.594 33.333 0.00 0.00 41.33 1.40
43 44 7.608376 TCGATGGTGTTCATTTCCATACTTTTA 59.392 33.333 0.00 0.00 41.33 1.52
44 45 6.432783 TCGATGGTGTTCATTTCCATACTTTT 59.567 34.615 0.00 0.00 41.33 2.27
45 46 5.943416 TCGATGGTGTTCATTTCCATACTTT 59.057 36.000 0.00 0.00 41.33 2.66
46 47 5.354234 GTCGATGGTGTTCATTTCCATACTT 59.646 40.000 0.00 0.00 41.33 2.24
47 48 4.876107 GTCGATGGTGTTCATTTCCATACT 59.124 41.667 0.00 0.00 41.33 2.12
48 49 4.260212 CGTCGATGGTGTTCATTTCCATAC 60.260 45.833 0.00 0.00 41.33 2.39
49 50 3.868661 CGTCGATGGTGTTCATTTCCATA 59.131 43.478 0.00 0.00 41.33 2.74
50 51 2.677836 CGTCGATGGTGTTCATTTCCAT 59.322 45.455 0.00 0.00 43.54 3.41
51 52 2.073056 CGTCGATGGTGTTCATTTCCA 58.927 47.619 0.00 0.00 35.97 3.53
52 53 2.073816 ACGTCGATGGTGTTCATTTCC 58.926 47.619 9.90 0.00 35.97 3.13
53 54 3.806316 AACGTCGATGGTGTTCATTTC 57.194 42.857 9.90 0.00 35.97 2.17
54 55 5.007823 TGTTTAACGTCGATGGTGTTCATTT 59.992 36.000 5.15 0.00 35.97 2.32
55 56 4.512198 TGTTTAACGTCGATGGTGTTCATT 59.488 37.500 5.15 0.00 35.97 2.57
56 57 4.059511 TGTTTAACGTCGATGGTGTTCAT 58.940 39.130 5.15 0.00 39.13 2.57
57 58 3.455327 TGTTTAACGTCGATGGTGTTCA 58.545 40.909 5.15 0.00 0.00 3.18
58 59 4.206088 GTTGTTTAACGTCGATGGTGTTC 58.794 43.478 5.15 0.00 0.00 3.18
59 60 4.199840 GTTGTTTAACGTCGATGGTGTT 57.800 40.909 5.15 3.14 0.00 3.32
60 61 3.865224 GTTGTTTAACGTCGATGGTGT 57.135 42.857 5.15 0.00 0.00 4.16
73 74 9.840427 GGTTAGTGTAGTAGTATTCGTTGTTTA 57.160 33.333 0.00 0.00 0.00 2.01
74 75 8.359642 TGGTTAGTGTAGTAGTATTCGTTGTTT 58.640 33.333 0.00 0.00 0.00 2.83
75 76 7.885297 TGGTTAGTGTAGTAGTATTCGTTGTT 58.115 34.615 0.00 0.00 0.00 2.83
76 77 7.452880 TGGTTAGTGTAGTAGTATTCGTTGT 57.547 36.000 0.00 0.00 0.00 3.32
77 78 9.661187 CTATGGTTAGTGTAGTAGTATTCGTTG 57.339 37.037 0.00 0.00 0.00 4.10
78 79 8.348507 GCTATGGTTAGTGTAGTAGTATTCGTT 58.651 37.037 0.00 0.00 0.00 3.85
79 80 7.500227 TGCTATGGTTAGTGTAGTAGTATTCGT 59.500 37.037 0.00 0.00 0.00 3.85
80 81 7.868775 TGCTATGGTTAGTGTAGTAGTATTCG 58.131 38.462 0.00 0.00 0.00 3.34
81 82 9.460906 GTTGCTATGGTTAGTGTAGTAGTATTC 57.539 37.037 0.00 0.00 0.00 1.75
82 83 8.133627 CGTTGCTATGGTTAGTGTAGTAGTATT 58.866 37.037 0.00 0.00 0.00 1.89
83 84 7.500227 TCGTTGCTATGGTTAGTGTAGTAGTAT 59.500 37.037 0.00 0.00 0.00 2.12
84 85 6.823182 TCGTTGCTATGGTTAGTGTAGTAGTA 59.177 38.462 0.00 0.00 0.00 1.82
85 86 5.649395 TCGTTGCTATGGTTAGTGTAGTAGT 59.351 40.000 0.00 0.00 0.00 2.73
86 87 6.127810 TCGTTGCTATGGTTAGTGTAGTAG 57.872 41.667 0.00 0.00 0.00 2.57
87 88 6.513806 TTCGTTGCTATGGTTAGTGTAGTA 57.486 37.500 0.00 0.00 0.00 1.82
88 89 5.395682 TTCGTTGCTATGGTTAGTGTAGT 57.604 39.130 0.00 0.00 0.00 2.73
89 90 6.715344 TTTTCGTTGCTATGGTTAGTGTAG 57.285 37.500 0.00 0.00 0.00 2.74
90 91 7.675962 AATTTTCGTTGCTATGGTTAGTGTA 57.324 32.000 0.00 0.00 0.00 2.90
91 92 6.569179 AATTTTCGTTGCTATGGTTAGTGT 57.431 33.333 0.00 0.00 0.00 3.55
92 93 7.619161 GCAAAATTTTCGTTGCTATGGTTAGTG 60.619 37.037 0.00 0.00 45.34 2.74
93 94 6.364976 GCAAAATTTTCGTTGCTATGGTTAGT 59.635 34.615 0.00 0.00 45.34 2.24
94 95 6.751259 GCAAAATTTTCGTTGCTATGGTTAG 58.249 36.000 0.00 0.00 45.34 2.34
95 96 6.698359 GCAAAATTTTCGTTGCTATGGTTA 57.302 33.333 0.00 0.00 45.34 2.85
96 97 5.590104 GCAAAATTTTCGTTGCTATGGTT 57.410 34.783 0.00 0.00 45.34 3.67
104 105 3.563390 ACAATGGGGCAAAATTTTCGTTG 59.437 39.130 15.47 15.47 0.00 4.10
105 106 3.563390 CACAATGGGGCAAAATTTTCGTT 59.437 39.130 0.00 0.00 0.00 3.85
106 107 3.137533 CACAATGGGGCAAAATTTTCGT 58.862 40.909 0.00 0.00 0.00 3.85
107 108 2.095819 GCACAATGGGGCAAAATTTTCG 60.096 45.455 0.00 0.00 0.00 3.46
108 109 2.883386 TGCACAATGGGGCAAAATTTTC 59.117 40.909 0.00 0.00 37.03 2.29
109 110 2.941480 TGCACAATGGGGCAAAATTTT 58.059 38.095 0.00 0.00 37.03 1.82
110 111 2.653234 TGCACAATGGGGCAAAATTT 57.347 40.000 0.00 0.00 37.03 1.82
111 112 2.653234 TTGCACAATGGGGCAAAATT 57.347 40.000 7.48 0.00 46.11 1.82
115 116 0.179062 GTTGTTGCACAATGGGGCAA 60.179 50.000 5.38 5.38 46.84 4.52
116 117 1.047596 AGTTGTTGCACAATGGGGCA 61.048 50.000 0.00 0.00 40.59 5.36
117 118 0.106521 AAGTTGTTGCACAATGGGGC 59.893 50.000 0.00 0.00 40.59 5.80
118 119 1.602668 CGAAGTTGTTGCACAATGGGG 60.603 52.381 5.26 0.00 40.59 4.96
119 120 1.066908 ACGAAGTTGTTGCACAATGGG 59.933 47.619 5.26 0.00 37.78 4.00
120 121 2.490328 ACGAAGTTGTTGCACAATGG 57.510 45.000 5.26 0.00 37.78 3.16
121 122 4.209452 ACTACGAAGTTGTTGCACAATG 57.791 40.909 5.26 0.00 45.39 2.82
122 123 5.699001 TCATACTACGAAGTTGTTGCACAAT 59.301 36.000 5.26 0.00 45.39 2.71
123 124 5.050634 GTCATACTACGAAGTTGTTGCACAA 60.051 40.000 0.00 0.00 45.39 3.33
124 125 4.446385 GTCATACTACGAAGTTGTTGCACA 59.554 41.667 0.00 0.00 45.39 4.57
125 126 4.143179 GGTCATACTACGAAGTTGTTGCAC 60.143 45.833 0.00 0.00 45.39 4.57
126 127 3.991773 GGTCATACTACGAAGTTGTTGCA 59.008 43.478 0.00 0.00 45.39 4.08
127 128 3.370061 GGGTCATACTACGAAGTTGTTGC 59.630 47.826 0.00 0.00 45.39 4.17
128 129 4.817517 AGGGTCATACTACGAAGTTGTTG 58.182 43.478 0.00 0.00 45.39 3.33
129 130 5.948162 TCTAGGGTCATACTACGAAGTTGTT 59.052 40.000 0.00 0.00 45.39 2.83
131 132 6.446781 TTCTAGGGTCATACTACGAAGTTG 57.553 41.667 0.00 0.00 37.78 3.16
132 133 7.061688 AGATTCTAGGGTCATACTACGAAGTT 58.938 38.462 0.00 0.00 37.78 2.66
134 135 6.711194 TGAGATTCTAGGGTCATACTACGAAG 59.289 42.308 0.00 0.00 0.00 3.79
135 136 6.485984 GTGAGATTCTAGGGTCATACTACGAA 59.514 42.308 0.00 0.00 0.00 3.85
136 137 5.996513 GTGAGATTCTAGGGTCATACTACGA 59.003 44.000 0.00 0.00 0.00 3.43
137 138 5.998981 AGTGAGATTCTAGGGTCATACTACG 59.001 44.000 0.00 0.00 0.00 3.51
138 139 6.148150 CGAGTGAGATTCTAGGGTCATACTAC 59.852 46.154 0.00 0.00 0.00 2.73
139 140 6.183361 ACGAGTGAGATTCTAGGGTCATACTA 60.183 42.308 0.00 0.00 0.00 1.82
140 141 5.067273 CGAGTGAGATTCTAGGGTCATACT 58.933 45.833 0.00 0.00 0.00 2.12
141 142 4.822896 ACGAGTGAGATTCTAGGGTCATAC 59.177 45.833 0.00 0.00 0.00 2.39
142 143 5.050126 ACGAGTGAGATTCTAGGGTCATA 57.950 43.478 0.00 0.00 0.00 2.15
143 144 3.886505 GACGAGTGAGATTCTAGGGTCAT 59.113 47.826 0.00 0.00 0.00 3.06
144 145 3.054287 AGACGAGTGAGATTCTAGGGTCA 60.054 47.826 0.00 0.00 0.00 4.02
145 146 3.547746 AGACGAGTGAGATTCTAGGGTC 58.452 50.000 0.00 0.00 0.00 4.46
146 147 3.547746 GAGACGAGTGAGATTCTAGGGT 58.452 50.000 0.00 0.00 0.00 4.34
147 148 2.882137 GGAGACGAGTGAGATTCTAGGG 59.118 54.545 0.00 0.00 0.00 3.53
148 149 3.314080 GTGGAGACGAGTGAGATTCTAGG 59.686 52.174 0.00 0.00 0.00 3.02
149 150 3.314080 GGTGGAGACGAGTGAGATTCTAG 59.686 52.174 0.00 0.00 0.00 2.43
150 151 3.280295 GGTGGAGACGAGTGAGATTCTA 58.720 50.000 0.00 0.00 0.00 2.10
151 152 2.096248 GGTGGAGACGAGTGAGATTCT 58.904 52.381 0.00 0.00 0.00 2.40
152 153 1.135333 GGGTGGAGACGAGTGAGATTC 59.865 57.143 0.00 0.00 0.00 2.52
153 154 1.187087 GGGTGGAGACGAGTGAGATT 58.813 55.000 0.00 0.00 0.00 2.40
154 155 0.684805 GGGGTGGAGACGAGTGAGAT 60.685 60.000 0.00 0.00 0.00 2.75
155 156 1.304217 GGGGTGGAGACGAGTGAGA 60.304 63.158 0.00 0.00 0.00 3.27
156 157 1.185618 TTGGGGTGGAGACGAGTGAG 61.186 60.000 0.00 0.00 0.00 3.51
157 158 0.761323 TTTGGGGTGGAGACGAGTGA 60.761 55.000 0.00 0.00 0.00 3.41
158 159 0.107831 TTTTGGGGTGGAGACGAGTG 59.892 55.000 0.00 0.00 0.00 3.51
159 160 1.064825 ATTTTGGGGTGGAGACGAGT 58.935 50.000 0.00 0.00 0.00 4.18
160 161 2.200373 AATTTTGGGGTGGAGACGAG 57.800 50.000 0.00 0.00 0.00 4.18
161 162 2.613474 CGTAATTTTGGGGTGGAGACGA 60.613 50.000 0.00 0.00 0.00 4.20
162 163 1.735571 CGTAATTTTGGGGTGGAGACG 59.264 52.381 0.00 0.00 0.00 4.18
163 164 3.007635 CTCGTAATTTTGGGGTGGAGAC 58.992 50.000 0.00 0.00 0.00 3.36
164 165 2.640826 ACTCGTAATTTTGGGGTGGAGA 59.359 45.455 0.00 0.00 0.00 3.71
165 166 3.007635 GACTCGTAATTTTGGGGTGGAG 58.992 50.000 0.00 0.00 0.00 3.86
166 167 2.290450 GGACTCGTAATTTTGGGGTGGA 60.290 50.000 0.00 0.00 0.00 4.02
167 168 2.089201 GGACTCGTAATTTTGGGGTGG 58.911 52.381 0.00 0.00 0.00 4.61
168 169 2.785562 TGGACTCGTAATTTTGGGGTG 58.214 47.619 0.00 0.00 0.00 4.61
169 170 3.352648 CATGGACTCGTAATTTTGGGGT 58.647 45.455 0.00 0.00 0.00 4.95
170 171 2.099098 GCATGGACTCGTAATTTTGGGG 59.901 50.000 0.00 0.00 0.00 4.96
171 172 3.016736 AGCATGGACTCGTAATTTTGGG 58.983 45.455 0.00 0.00 0.00 4.12
172 173 4.260212 CGTAGCATGGACTCGTAATTTTGG 60.260 45.833 0.00 0.00 0.00 3.28
173 174 4.328983 ACGTAGCATGGACTCGTAATTTTG 59.671 41.667 0.00 0.00 33.04 2.44
174 175 4.501071 ACGTAGCATGGACTCGTAATTTT 58.499 39.130 0.00 0.00 33.04 1.82
175 176 4.119442 ACGTAGCATGGACTCGTAATTT 57.881 40.909 0.00 0.00 33.04 1.82
176 177 3.795623 ACGTAGCATGGACTCGTAATT 57.204 42.857 0.00 0.00 33.04 1.40
177 178 3.881688 AGTACGTAGCATGGACTCGTAAT 59.118 43.478 0.00 0.00 38.39 1.89
178 179 3.064408 CAGTACGTAGCATGGACTCGTAA 59.936 47.826 0.00 0.00 38.39 3.18
179 180 2.610833 CAGTACGTAGCATGGACTCGTA 59.389 50.000 0.00 0.00 36.24 3.43
180 181 1.400846 CAGTACGTAGCATGGACTCGT 59.599 52.381 0.00 0.00 38.30 4.18
181 182 1.860399 GCAGTACGTAGCATGGACTCG 60.860 57.143 0.00 0.00 0.00 4.18
182 183 1.405821 AGCAGTACGTAGCATGGACTC 59.594 52.381 9.22 0.00 0.00 3.36
183 184 1.135139 CAGCAGTACGTAGCATGGACT 59.865 52.381 9.22 0.00 0.00 3.85
184 185 1.560923 CAGCAGTACGTAGCATGGAC 58.439 55.000 9.22 0.00 0.00 4.02
185 186 0.179111 GCAGCAGTACGTAGCATGGA 60.179 55.000 9.22 0.00 0.00 3.41
186 187 1.482621 CGCAGCAGTACGTAGCATGG 61.483 60.000 9.22 0.59 0.00 3.66
187 188 1.920051 CGCAGCAGTACGTAGCATG 59.080 57.895 9.22 4.18 0.00 4.06
188 189 4.402192 CGCAGCAGTACGTAGCAT 57.598 55.556 9.22 0.00 0.00 3.79
205 206 4.373116 TGCTCGACCTGGAACCGC 62.373 66.667 0.00 0.00 0.00 5.68
206 207 2.125912 CTGCTCGACCTGGAACCG 60.126 66.667 0.00 0.88 0.00 4.44
207 208 1.079750 GTCTGCTCGACCTGGAACC 60.080 63.158 0.00 0.00 36.62 3.62
208 209 0.667792 GTGTCTGCTCGACCTGGAAC 60.668 60.000 0.00 0.00 42.13 3.62
209 210 1.666011 GTGTCTGCTCGACCTGGAA 59.334 57.895 0.00 0.00 42.13 3.53
210 211 2.626780 CGTGTCTGCTCGACCTGGA 61.627 63.158 0.00 0.00 42.13 3.86
211 212 2.126307 CGTGTCTGCTCGACCTGG 60.126 66.667 0.00 0.00 42.13 4.45
212 213 2.954611 TCGTGTCTGCTCGACCTG 59.045 61.111 4.63 0.00 42.13 4.00
216 217 2.643272 GTGGTCGTGTCTGCTCGA 59.357 61.111 0.00 0.00 38.13 4.04
217 218 2.801162 CGTGGTCGTGTCTGCTCG 60.801 66.667 0.00 0.00 0.00 5.03
218 219 1.442857 CTCGTGGTCGTGTCTGCTC 60.443 63.158 0.00 0.00 38.33 4.26
219 220 1.897137 TCTCGTGGTCGTGTCTGCT 60.897 57.895 0.00 0.00 38.33 4.24
220 221 1.729838 GTCTCGTGGTCGTGTCTGC 60.730 63.158 0.00 0.00 38.33 4.26
221 222 0.386100 CTGTCTCGTGGTCGTGTCTG 60.386 60.000 0.00 0.00 38.33 3.51
222 223 0.534427 TCTGTCTCGTGGTCGTGTCT 60.534 55.000 0.00 0.00 38.33 3.41
223 224 0.309922 TTCTGTCTCGTGGTCGTGTC 59.690 55.000 0.00 0.00 38.33 3.67
224 225 0.742505 TTTCTGTCTCGTGGTCGTGT 59.257 50.000 0.00 0.00 38.33 4.49
225 226 2.065993 ATTTCTGTCTCGTGGTCGTG 57.934 50.000 0.00 0.00 38.33 4.35
226 227 2.609737 GGAATTTCTGTCTCGTGGTCGT 60.610 50.000 0.00 0.00 38.33 4.34
227 228 1.993370 GGAATTTCTGTCTCGTGGTCG 59.007 52.381 0.00 0.00 38.55 4.79
228 229 1.993370 CGGAATTTCTGTCTCGTGGTC 59.007 52.381 0.00 0.00 0.00 4.02
229 230 1.939838 GCGGAATTTCTGTCTCGTGGT 60.940 52.381 7.07 0.00 0.00 4.16
230 231 0.721718 GCGGAATTTCTGTCTCGTGG 59.278 55.000 7.07 0.00 0.00 4.94
231 232 0.721718 GGCGGAATTTCTGTCTCGTG 59.278 55.000 7.07 0.00 0.00 4.35
232 233 0.320374 TGGCGGAATTTCTGTCTCGT 59.680 50.000 10.96 0.00 0.00 4.18
233 234 1.656652 ATGGCGGAATTTCTGTCTCG 58.343 50.000 10.96 0.18 0.00 4.04
234 235 4.876107 TCTTTATGGCGGAATTTCTGTCTC 59.124 41.667 10.96 1.11 0.00 3.36
235 236 4.843728 TCTTTATGGCGGAATTTCTGTCT 58.156 39.130 10.96 0.32 0.00 3.41
236 237 5.560966 TTCTTTATGGCGGAATTTCTGTC 57.439 39.130 2.77 2.77 0.00 3.51
237 238 5.220854 CGATTCTTTATGGCGGAATTTCTGT 60.221 40.000 7.07 0.00 30.98 3.41
238 239 5.207768 CGATTCTTTATGGCGGAATTTCTG 58.792 41.667 0.56 0.56 30.98 3.02
239 240 4.275936 CCGATTCTTTATGGCGGAATTTCT 59.724 41.667 0.00 0.00 44.43 2.52
240 241 4.537015 CCGATTCTTTATGGCGGAATTTC 58.463 43.478 0.00 0.00 44.43 2.17
241 242 3.317993 CCCGATTCTTTATGGCGGAATTT 59.682 43.478 0.00 0.00 44.43 1.82
242 243 2.884639 CCCGATTCTTTATGGCGGAATT 59.115 45.455 0.00 0.00 44.43 2.17
243 244 2.504367 CCCGATTCTTTATGGCGGAAT 58.496 47.619 0.00 0.00 44.43 3.01
244 245 1.476110 CCCCGATTCTTTATGGCGGAA 60.476 52.381 0.00 0.00 44.43 4.30
245 246 0.107831 CCCCGATTCTTTATGGCGGA 59.892 55.000 0.00 0.00 44.43 5.54
246 247 0.889186 CCCCCGATTCTTTATGGCGG 60.889 60.000 0.00 0.00 41.53 6.13
247 248 2.629002 CCCCCGATTCTTTATGGCG 58.371 57.895 0.00 0.00 0.00 5.69
871 877 2.695970 CCCTCCTCTCTCCTCCGGT 61.696 68.421 0.00 0.00 0.00 5.28
926 950 1.003839 TGGAGACGCGCAAGGATTT 60.004 52.632 5.73 0.00 38.28 2.17
1012 1041 3.661648 GGCCTCCCCCAAGCTCAA 61.662 66.667 0.00 0.00 0.00 3.02
1189 1236 2.360350 CACCATGGGCAGAAGCGT 60.360 61.111 18.09 0.00 43.41 5.07
1258 1310 5.163550 CCAAGAGAAACGGAAAAGAAAAGGT 60.164 40.000 0.00 0.00 0.00 3.50
1275 1327 4.097437 GCATGCAGAATCAAATCCAAGAGA 59.903 41.667 14.21 0.00 0.00 3.10
1276 1328 4.360563 GCATGCAGAATCAAATCCAAGAG 58.639 43.478 14.21 0.00 0.00 2.85
1288 1340 1.105167 CATCCCGTGGCATGCAGAAT 61.105 55.000 21.36 4.83 0.00 2.40
1300 1358 2.895372 GCGGCGATTTCATCCCGT 60.895 61.111 12.98 0.00 41.82 5.28
1303 1361 3.649986 CCGGCGGCGATTTCATCC 61.650 66.667 34.49 0.00 0.00 3.51
1309 1367 0.038526 CTACTATTCCGGCGGCGATT 60.039 55.000 34.49 18.50 0.00 3.34
1335 1393 1.375140 CAGATCGGATCGCCCCATG 60.375 63.158 12.08 0.79 0.00 3.66
1337 1395 3.928779 GCAGATCGGATCGCCCCA 61.929 66.667 17.93 0.00 0.00 4.96
1354 1412 2.045045 TCCAAATGCCCTGCGGAG 60.045 61.111 0.00 0.00 0.00 4.63
1462 1530 3.386237 GCGGTGTCCTCCTGCTCT 61.386 66.667 0.00 0.00 0.00 4.09
1501 1569 3.744719 TCGTTGGGCGAGGACGAG 61.745 66.667 0.00 0.00 45.68 4.18
1723 1794 1.651138 CGCTCGTCTCTGTGTTTGATC 59.349 52.381 0.00 0.00 0.00 2.92
1741 1812 2.278875 GGAAATGATTAAGCAAACGCGC 59.721 45.455 5.73 0.00 0.00 6.86
1743 1814 4.986622 AGAGGAAATGATTAAGCAAACGC 58.013 39.130 0.00 0.00 0.00 4.84
1909 1982 2.159626 CGAGACGAGAGAGACAAAGGAC 60.160 54.545 0.00 0.00 0.00 3.85
2441 2527 4.318831 CGAGGAGCGAAAATATTAAGGTGC 60.319 45.833 0.00 0.00 44.57 5.01
2505 2596 2.553028 GCTGGGGTTCTCATTTCTCACA 60.553 50.000 0.00 0.00 0.00 3.58
2529 2620 0.098200 CGACAGACGCGAATCCACTA 59.902 55.000 15.93 0.00 34.51 2.74
2571 2662 7.495901 TGCAACAATTTTCCTTTAACATCTGA 58.504 30.769 0.00 0.00 0.00 3.27
2645 2740 7.201496 CGAGGCACGTCTTAAAACTGTAATAAT 60.201 37.037 0.00 0.00 37.22 1.28
2646 2741 6.089820 CGAGGCACGTCTTAAAACTGTAATAA 59.910 38.462 0.00 0.00 37.22 1.40
2648 2743 4.387862 CGAGGCACGTCTTAAAACTGTAAT 59.612 41.667 0.00 0.00 37.22 1.89
2649 2744 3.737266 CGAGGCACGTCTTAAAACTGTAA 59.263 43.478 0.00 0.00 37.22 2.41
2650 2745 3.311106 CGAGGCACGTCTTAAAACTGTA 58.689 45.455 0.00 0.00 37.22 2.74
2651 2746 2.132762 CGAGGCACGTCTTAAAACTGT 58.867 47.619 0.00 0.00 37.22 3.55
2652 2747 2.856091 CGAGGCACGTCTTAAAACTG 57.144 50.000 0.00 0.00 37.22 3.16
2867 3207 2.045926 GCCAGTGCCAGTAGTGGG 60.046 66.667 18.46 2.18 45.17 4.61
2870 3210 1.674057 GAGTGCCAGTGCCAGTAGT 59.326 57.895 0.00 0.00 36.33 2.73
2872 3212 2.656646 CGAGTGCCAGTGCCAGTA 59.343 61.111 0.00 0.00 36.33 2.74
2912 3275 7.269511 CGATCTTCGAGGAAAATCTTAGTATCG 59.730 40.741 0.00 0.00 43.74 2.92
2915 3278 7.563888 TCGATCTTCGAGGAAAATCTTAGTA 57.436 36.000 0.00 0.00 44.82 1.82
2916 3279 6.452494 TCGATCTTCGAGGAAAATCTTAGT 57.548 37.500 0.00 0.00 44.82 2.24
2945 3308 0.515127 CACACAACGCCGCATCTTTA 59.485 50.000 0.00 0.00 0.00 1.85
2986 3358 2.290577 ACGGGAGTCGGAGTAGTAGTTT 60.291 50.000 0.00 0.00 40.62 2.66
2988 3360 0.908198 ACGGGAGTCGGAGTAGTAGT 59.092 55.000 0.00 0.00 40.62 2.73
2989 3361 2.159043 TGTACGGGAGTCGGAGTAGTAG 60.159 54.545 0.00 0.00 45.66 2.57
2990 3362 1.831106 TGTACGGGAGTCGGAGTAGTA 59.169 52.381 0.00 0.00 45.66 1.82
2991 3363 0.615331 TGTACGGGAGTCGGAGTAGT 59.385 55.000 0.00 0.00 45.66 2.73
2992 3364 1.742761 TTGTACGGGAGTCGGAGTAG 58.257 55.000 0.00 0.00 45.66 2.57
2993 3365 1.812571 GTTTGTACGGGAGTCGGAGTA 59.187 52.381 0.00 0.00 45.66 2.59
2994 3366 0.600057 GTTTGTACGGGAGTCGGAGT 59.400 55.000 0.00 0.00 45.66 3.85
2995 3367 0.886563 AGTTTGTACGGGAGTCGGAG 59.113 55.000 0.00 0.00 45.66 4.63
2996 3368 1.812571 GTAGTTTGTACGGGAGTCGGA 59.187 52.381 0.00 0.00 45.66 4.55
2997 3369 1.135286 GGTAGTTTGTACGGGAGTCGG 60.135 57.143 0.00 0.00 45.66 4.79
2998 3370 1.466360 CGGTAGTTTGTACGGGAGTCG 60.466 57.143 0.00 0.00 45.66 4.18
2999 3371 1.812571 TCGGTAGTTTGTACGGGAGTC 59.187 52.381 0.00 0.00 45.66 3.36
3001 3373 2.872370 CTTCGGTAGTTTGTACGGGAG 58.128 52.381 0.00 0.00 0.00 4.30
3002 3374 1.067635 GCTTCGGTAGTTTGTACGGGA 60.068 52.381 0.00 0.00 0.00 5.14
3004 3376 2.068837 TGCTTCGGTAGTTTGTACGG 57.931 50.000 0.00 0.00 0.00 4.02
3005 3377 4.455917 TTTTGCTTCGGTAGTTTGTACG 57.544 40.909 0.00 0.00 0.00 3.67
3006 3378 7.125536 AGTATTTTGCTTCGGTAGTTTGTAC 57.874 36.000 0.00 0.00 0.00 2.90
3007 3379 8.090214 AGTAGTATTTTGCTTCGGTAGTTTGTA 58.910 33.333 0.00 0.00 0.00 2.41
3010 3382 7.547019 GGTAGTAGTATTTTGCTTCGGTAGTTT 59.453 37.037 0.00 0.00 0.00 2.66
3011 3383 7.038048 GGTAGTAGTATTTTGCTTCGGTAGTT 58.962 38.462 0.00 0.00 0.00 2.24
3012 3384 6.406288 GGGTAGTAGTATTTTGCTTCGGTAGT 60.406 42.308 0.00 0.00 0.00 2.73
3013 3385 5.981915 GGGTAGTAGTATTTTGCTTCGGTAG 59.018 44.000 0.00 0.00 0.00 3.18
3014 3386 5.163416 GGGGTAGTAGTATTTTGCTTCGGTA 60.163 44.000 0.00 0.00 0.00 4.02
3015 3387 4.383444 GGGGTAGTAGTATTTTGCTTCGGT 60.383 45.833 0.00 0.00 0.00 4.69
3016 3388 4.124970 GGGGTAGTAGTATTTTGCTTCGG 58.875 47.826 0.00 0.00 0.00 4.30
3017 3389 3.800506 CGGGGTAGTAGTATTTTGCTTCG 59.199 47.826 0.00 0.00 0.00 3.79
3029 3422 2.565834 CCATTATGGGACGGGGTAGTAG 59.434 54.545 2.72 0.00 32.67 2.57
3030 3423 2.090606 ACCATTATGGGACGGGGTAGTA 60.091 50.000 16.35 0.00 43.37 1.82
3031 3424 1.344701 ACCATTATGGGACGGGGTAGT 60.345 52.381 16.35 0.00 43.37 2.73
3032 3425 1.071699 CACCATTATGGGACGGGGTAG 59.928 57.143 16.35 0.00 43.37 3.18
3033 3426 1.133363 CACCATTATGGGACGGGGTA 58.867 55.000 16.35 0.00 43.37 3.69
3034 3427 1.919771 CACCATTATGGGACGGGGT 59.080 57.895 16.35 0.00 43.37 4.95
3035 3428 1.528309 GCACCATTATGGGACGGGG 60.528 63.158 16.35 0.00 43.37 5.73
3036 3429 1.528309 GGCACCATTATGGGACGGG 60.528 63.158 16.35 0.99 43.37 5.28
3037 3430 0.395036 TTGGCACCATTATGGGACGG 60.395 55.000 16.35 3.41 43.37 4.79
3038 3431 1.024271 CTTGGCACCATTATGGGACG 58.976 55.000 16.35 4.80 43.37 4.79
3039 3432 2.143876 ACTTGGCACCATTATGGGAC 57.856 50.000 16.35 7.36 43.37 4.46
3040 3433 2.622977 GGAACTTGGCACCATTATGGGA 60.623 50.000 16.35 0.00 43.37 4.37
3041 3434 1.756538 GGAACTTGGCACCATTATGGG 59.243 52.381 16.35 5.82 43.37 4.00
3042 3435 1.405105 CGGAACTTGGCACCATTATGG 59.595 52.381 10.08 10.08 45.02 2.74
3043 3436 1.405105 CCGGAACTTGGCACCATTATG 59.595 52.381 0.00 0.00 0.00 1.90
3044 3437 1.005450 ACCGGAACTTGGCACCATTAT 59.995 47.619 9.46 0.00 0.00 1.28
3045 3438 0.402504 ACCGGAACTTGGCACCATTA 59.597 50.000 9.46 0.00 0.00 1.90
3046 3439 0.402504 TACCGGAACTTGGCACCATT 59.597 50.000 9.46 0.00 0.00 3.16
3050 3443 0.535553 TTGGTACCGGAACTTGGCAC 60.536 55.000 9.46 0.00 0.00 5.01
3067 3464 5.106442 TCATACGCTACTACACCATTGTTG 58.894 41.667 0.00 0.00 37.15 3.33
3105 3502 1.608025 CCTTGACAGCTCCTGCGTAAA 60.608 52.381 0.00 0.00 45.42 2.01
3127 3585 4.713321 AGGACCACCTGTACAACGTTATAT 59.287 41.667 0.00 0.00 45.92 0.86
3130 3588 2.318908 AGGACCACCTGTACAACGTTA 58.681 47.619 0.00 0.00 45.92 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.