Multiple sequence alignment - TraesCS5B01G230900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G230900 chr5B 100.000 2363 0 0 1 2363 407622717 407620355 0.000000e+00 4364
1 TraesCS5B01G230900 chr5B 80.406 689 44 51 51 677 407614950 407615609 7.750000e-120 440
2 TraesCS5B01G230900 chr5B 87.811 402 15 8 1412 1800 691953580 691953200 7.750000e-120 440
3 TraesCS5B01G230900 chr5B 90.940 298 24 2 737 1031 691954104 691953807 4.730000e-107 398
4 TraesCS5B01G230900 chr5B 87.783 221 26 1 1702 1922 407621761 407621980 8.380000e-65 257
5 TraesCS5B01G230900 chr5B 90.426 188 7 6 1232 1409 691953806 691953620 1.090000e-58 237
6 TraesCS5B01G230900 chr2B 92.319 690 38 10 730 1408 384087643 384088328 0.000000e+00 966
7 TraesCS5B01G230900 chr2B 91.379 522 23 5 1412 1922 384088369 384088879 0.000000e+00 695
8 TraesCS5B01G230900 chr2B 88.789 223 23 2 1704 1925 384087869 384087648 2.990000e-69 272
9 TraesCS5B01G230900 chr5D 91.458 679 38 10 4 673 344446599 344447266 0.000000e+00 915
10 TraesCS5B01G230900 chr5D 90.356 477 38 6 1446 1922 490497133 490496665 9.280000e-174 619
11 TraesCS5B01G230900 chr5D 79.942 688 41 53 52 677 344468816 344468164 1.310000e-112 416
12 TraesCS5B01G230900 chr5D 84.759 374 25 14 1052 1410 490497871 490497515 1.740000e-91 346
13 TraesCS5B01G230900 chr5D 77.895 190 33 6 126 306 452494003 452493814 2.480000e-20 110
14 TraesCS5B01G230900 chr5A 88.260 724 48 18 47 738 447631411 447630693 0.000000e+00 832
15 TraesCS5B01G230900 chr5A 91.529 543 39 3 735 1277 436327901 436328436 0.000000e+00 741
16 TraesCS5B01G230900 chr5A 82.851 484 28 24 51 491 447551729 447552200 1.330000e-102 383
17 TraesCS5B01G230900 chr5A 90.972 288 19 1 52 339 447624156 447624436 4.770000e-102 381
18 TraesCS5B01G230900 chr5A 78.836 189 30 7 131 309 571425514 571425326 4.130000e-23 119
19 TraesCS5B01G230900 chr1B 91.602 512 35 5 1412 1922 59461312 59461816 0.000000e+00 701
20 TraesCS5B01G230900 chr1B 88.649 370 30 6 1052 1410 59460905 59461273 7.750000e-120 440
21 TraesCS5B01G230900 chr1B 88.968 281 27 3 729 1009 59460625 59460901 6.250000e-91 344
22 TraesCS5B01G230900 chr3B 85.603 639 78 5 738 1371 28119525 28120154 0.000000e+00 658
23 TraesCS5B01G230900 chr6D 86.680 518 61 6 1412 1922 468151082 468151598 3.410000e-158 568
24 TraesCS5B01G230900 chr6D 84.330 351 53 2 738 1088 468150470 468150818 2.250000e-90 342
25 TraesCS5B01G230900 chrUn 86.015 522 59 8 1412 1922 216383130 216382612 4.440000e-152 547
26 TraesCS5B01G230900 chrUn 83.761 351 55 2 738 1088 216383741 216383393 4.870000e-87 331
27 TraesCS5B01G230900 chr6B 84.512 523 58 12 1421 1922 714334537 714335057 1.630000e-136 496
28 TraesCS5B01G230900 chr6B 91.845 233 19 0 764 996 655751006 655750774 2.260000e-85 326
29 TraesCS5B01G230900 chr6B 84.411 263 39 2 738 999 714334069 714334330 8.380000e-65 257
30 TraesCS5B01G230900 chr7A 87.055 309 35 3 1615 1922 17930523 17930219 6.250000e-91 344
31 TraesCS5B01G230900 chr7A 85.609 271 34 4 1653 1922 488473685 488473419 1.790000e-71 279
32 TraesCS5B01G230900 chr7A 85.294 272 33 6 1653 1922 488112562 488112296 8.320000e-70 274
33 TraesCS5B01G230900 chr4D 86.601 306 33 3 1618 1922 7037783 7037485 4.870000e-87 331
34 TraesCS5B01G230900 chr1D 84.591 318 44 3 1605 1921 323870742 323871055 6.340000e-81 311


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G230900 chr5B 407620355 407622717 2362 True 4364.000000 4364 100.000000 1 2363 1 chr5B.!!$R1 2362
1 TraesCS5B01G230900 chr5B 407614950 407615609 659 False 440.000000 440 80.406000 51 677 1 chr5B.!!$F1 626
2 TraesCS5B01G230900 chr5B 691953200 691954104 904 True 358.333333 440 89.725667 737 1800 3 chr5B.!!$R2 1063
3 TraesCS5B01G230900 chr2B 384087643 384088879 1236 False 830.500000 966 91.849000 730 1922 2 chr2B.!!$F1 1192
4 TraesCS5B01G230900 chr5D 344446599 344447266 667 False 915.000000 915 91.458000 4 673 1 chr5D.!!$F1 669
5 TraesCS5B01G230900 chr5D 490496665 490497871 1206 True 482.500000 619 87.557500 1052 1922 2 chr5D.!!$R3 870
6 TraesCS5B01G230900 chr5D 344468164 344468816 652 True 416.000000 416 79.942000 52 677 1 chr5D.!!$R1 625
7 TraesCS5B01G230900 chr5A 447630693 447631411 718 True 832.000000 832 88.260000 47 738 1 chr5A.!!$R1 691
8 TraesCS5B01G230900 chr5A 436327901 436328436 535 False 741.000000 741 91.529000 735 1277 1 chr5A.!!$F1 542
9 TraesCS5B01G230900 chr1B 59460625 59461816 1191 False 495.000000 701 89.739667 729 1922 3 chr1B.!!$F1 1193
10 TraesCS5B01G230900 chr3B 28119525 28120154 629 False 658.000000 658 85.603000 738 1371 1 chr3B.!!$F1 633
11 TraesCS5B01G230900 chr6D 468150470 468151598 1128 False 455.000000 568 85.505000 738 1922 2 chr6D.!!$F1 1184
12 TraesCS5B01G230900 chrUn 216382612 216383741 1129 True 439.000000 547 84.888000 738 1922 2 chrUn.!!$R1 1184
13 TraesCS5B01G230900 chr6B 714334069 714335057 988 False 376.500000 496 84.461500 738 1922 2 chr6B.!!$F1 1184

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
440 519 0.108585 TGTTTGTGAGGTCTGGAGGC 59.891 55.0 0.0 0.0 0.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1933 2465 0.036577 TCTGCTCTGCTTTCAGGAGC 60.037 55.0 7.16 7.16 40.57 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 0.178903 AGACAGTAGCCACCTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
357 390 0.684535 TCCCGAGCTTTGATCACACA 59.315 50.000 0.00 0.00 0.00 3.72
369 402 1.195448 GATCACACAACACCAGCGAAG 59.805 52.381 0.00 0.00 0.00 3.79
371 404 0.304705 CACACAACACCAGCGAAGAC 59.695 55.000 0.00 0.00 0.00 3.01
395 444 2.106684 ACCAAGTTTCTTCCCTGAGACC 59.893 50.000 0.00 0.00 0.00 3.85
397 446 3.435026 CCAAGTTTCTTCCCTGAGACCAA 60.435 47.826 0.00 0.00 0.00 3.67
398 447 4.401925 CAAGTTTCTTCCCTGAGACCAAT 58.598 43.478 0.00 0.00 0.00 3.16
399 448 4.293662 AGTTTCTTCCCTGAGACCAATC 57.706 45.455 0.00 0.00 0.00 2.67
402 451 2.103373 TCTTCCCTGAGACCAATCGAG 58.897 52.381 0.00 0.00 0.00 4.04
406 455 1.550524 CCCTGAGACCAATCGAGAACA 59.449 52.381 0.00 0.00 0.00 3.18
408 457 2.232452 CCTGAGACCAATCGAGAACACT 59.768 50.000 0.00 0.00 0.00 3.55
410 459 4.098654 CCTGAGACCAATCGAGAACACTAT 59.901 45.833 0.00 0.00 0.00 2.12
411 460 4.998788 TGAGACCAATCGAGAACACTATG 58.001 43.478 0.00 0.00 0.00 2.23
440 519 0.108585 TGTTTGTGAGGTCTGGAGGC 59.891 55.000 0.00 0.00 0.00 4.70
537 628 3.081133 CGATCGGTCGCCAACTTG 58.919 61.111 4.56 0.00 41.49 3.16
538 629 2.452813 CGATCGGTCGCCAACTTGG 61.453 63.158 4.56 3.10 41.49 3.61
693 800 4.537135 ACGGAAGTGCTCTCAAGAAATA 57.463 40.909 0.00 0.00 46.97 1.40
694 801 4.499183 ACGGAAGTGCTCTCAAGAAATAG 58.501 43.478 0.00 0.00 46.97 1.73
699 806 7.492669 CGGAAGTGCTCTCAAGAAATAGAATAA 59.507 37.037 0.00 0.00 0.00 1.40
700 807 9.336171 GGAAGTGCTCTCAAGAAATAGAATAAT 57.664 33.333 0.00 0.00 0.00 1.28
780 888 6.460676 CGTCCCTCAACTTTACCGATAGTATT 60.461 42.308 0.00 0.00 0.00 1.89
826 935 7.997773 AACCAGAAAAATCTAGTCCCTTAAC 57.002 36.000 0.00 0.00 0.00 2.01
902 1012 3.214023 TGGCATGGTTTTGACCACA 57.786 47.368 0.00 0.00 43.37 4.17
920 1030 1.552337 ACAGAACTCGCCACATCATCT 59.448 47.619 0.00 0.00 0.00 2.90
969 1084 4.823364 ATCTTCTATCTCTCACCCAGGA 57.177 45.455 0.00 0.00 0.00 3.86
1011 1126 0.844661 TGGTTACCATGGGCCTGTCT 60.845 55.000 18.09 0.00 0.00 3.41
1040 1156 3.449227 CCACACGGGAGCTAGCGA 61.449 66.667 9.55 0.00 40.01 4.93
1410 1557 4.379243 CTCAGAACCAGCGCGGGT 62.379 66.667 27.31 27.31 45.04 5.28
1509 2004 2.241160 TCTAGCCGACTGGTTTGTGTA 58.759 47.619 0.00 0.00 37.67 2.90
1613 2109 4.503910 TGCGTATGGATGTATCATTAGCC 58.496 43.478 0.00 0.00 0.00 3.93
1758 2281 2.887568 CGATGTGGCGAGGTCAGC 60.888 66.667 0.00 0.00 0.00 4.26
1792 2322 0.732571 CACGTCAGCACAAAACCACT 59.267 50.000 0.00 0.00 0.00 4.00
1830 2360 5.163591 GGGACGAAAAATATCCGGTTTCAAT 60.164 40.000 13.14 2.71 32.90 2.57
1888 2420 5.659525 TGAGGGACCATTTCTAAACTATCGA 59.340 40.000 0.00 0.00 0.00 3.59
1929 2461 5.662674 AATATACTTATCCCTGACGGAGC 57.337 43.478 0.00 0.00 46.60 4.70
1930 2462 1.700955 TACTTATCCCTGACGGAGCC 58.299 55.000 0.00 0.00 46.60 4.70
1931 2463 0.032017 ACTTATCCCTGACGGAGCCT 60.032 55.000 0.00 0.00 46.60 4.58
1932 2464 0.676736 CTTATCCCTGACGGAGCCTC 59.323 60.000 0.00 0.00 46.60 4.70
1933 2465 1.107538 TTATCCCTGACGGAGCCTCG 61.108 60.000 0.00 0.00 46.60 4.63
1944 2476 2.267324 AGCCTCGCTCCTGAAAGC 59.733 61.111 0.00 0.00 30.62 3.51
1945 2477 2.046892 GCCTCGCTCCTGAAAGCA 60.047 61.111 0.00 0.00 42.62 3.91
1946 2478 2.105466 GCCTCGCTCCTGAAAGCAG 61.105 63.158 0.00 0.00 42.62 4.24
1947 2479 1.593787 CCTCGCTCCTGAAAGCAGA 59.406 57.895 0.00 0.00 45.17 4.26
1948 2480 0.459934 CCTCGCTCCTGAAAGCAGAG 60.460 60.000 0.00 9.31 45.17 3.35
1949 2481 1.079543 TCGCTCCTGAAAGCAGAGC 60.080 57.895 1.17 1.17 45.17 4.09
1950 2482 1.375140 CGCTCCTGAAAGCAGAGCA 60.375 57.895 11.37 0.00 45.17 4.26
1951 2483 1.360194 CGCTCCTGAAAGCAGAGCAG 61.360 60.000 11.37 0.00 45.17 4.24
1952 2484 0.036577 GCTCCTGAAAGCAGAGCAGA 60.037 55.000 6.37 0.00 45.17 4.26
1953 2485 1.610102 GCTCCTGAAAGCAGAGCAGAA 60.610 52.381 6.37 0.00 45.17 3.02
1954 2486 2.348660 CTCCTGAAAGCAGAGCAGAAG 58.651 52.381 0.00 0.00 45.17 2.85
1955 2487 1.002888 TCCTGAAAGCAGAGCAGAAGG 59.997 52.381 0.00 0.00 45.17 3.46
1956 2488 1.002888 CCTGAAAGCAGAGCAGAAGGA 59.997 52.381 0.00 0.00 45.17 3.36
1957 2489 2.551721 CCTGAAAGCAGAGCAGAAGGAA 60.552 50.000 0.00 0.00 45.17 3.36
1958 2490 3.144506 CTGAAAGCAGAGCAGAAGGAAA 58.855 45.455 0.00 0.00 45.17 3.13
1959 2491 3.757493 CTGAAAGCAGAGCAGAAGGAAAT 59.243 43.478 0.00 0.00 45.17 2.17
1960 2492 4.147321 TGAAAGCAGAGCAGAAGGAAATT 58.853 39.130 0.00 0.00 0.00 1.82
1961 2493 4.586001 TGAAAGCAGAGCAGAAGGAAATTT 59.414 37.500 0.00 0.00 0.00 1.82
1962 2494 5.769662 TGAAAGCAGAGCAGAAGGAAATTTA 59.230 36.000 0.00 0.00 0.00 1.40
1963 2495 6.265196 TGAAAGCAGAGCAGAAGGAAATTTAA 59.735 34.615 0.00 0.00 0.00 1.52
1964 2496 6.655078 AAGCAGAGCAGAAGGAAATTTAAA 57.345 33.333 0.00 0.00 0.00 1.52
1965 2497 6.847421 AGCAGAGCAGAAGGAAATTTAAAT 57.153 33.333 0.00 0.00 0.00 1.40
1966 2498 7.237209 AGCAGAGCAGAAGGAAATTTAAATT 57.763 32.000 7.64 7.64 0.00 1.82
1967 2499 7.095270 AGCAGAGCAGAAGGAAATTTAAATTG 58.905 34.615 14.04 2.17 0.00 2.32
1968 2500 6.312180 GCAGAGCAGAAGGAAATTTAAATTGG 59.688 38.462 14.04 0.89 0.00 3.16
1969 2501 6.312180 CAGAGCAGAAGGAAATTTAAATTGGC 59.688 38.462 14.04 9.32 0.00 4.52
1970 2502 6.014327 AGAGCAGAAGGAAATTTAAATTGGCA 60.014 34.615 14.04 0.00 0.00 4.92
1971 2503 6.532826 AGCAGAAGGAAATTTAAATTGGCAA 58.467 32.000 14.04 0.68 0.00 4.52
1972 2504 7.170277 AGCAGAAGGAAATTTAAATTGGCAAT 58.830 30.769 14.04 6.96 0.00 3.56
1973 2505 8.320617 AGCAGAAGGAAATTTAAATTGGCAATA 58.679 29.630 14.05 0.00 0.00 1.90
1974 2506 8.390354 GCAGAAGGAAATTTAAATTGGCAATAC 58.610 33.333 14.05 0.00 0.00 1.89
1975 2507 8.594687 CAGAAGGAAATTTAAATTGGCAATACG 58.405 33.333 14.05 0.00 0.00 3.06
1976 2508 8.311109 AGAAGGAAATTTAAATTGGCAATACGT 58.689 29.630 14.05 4.76 0.00 3.57
1977 2509 9.575783 GAAGGAAATTTAAATTGGCAATACGTA 57.424 29.630 14.05 0.00 0.00 3.57
1978 2510 9.581099 AAGGAAATTTAAATTGGCAATACGTAG 57.419 29.630 14.05 0.00 0.00 3.51
1979 2511 8.194769 AGGAAATTTAAATTGGCAATACGTAGG 58.805 33.333 14.05 0.00 0.00 3.18
1980 2512 7.977293 GGAAATTTAAATTGGCAATACGTAGGT 59.023 33.333 14.05 0.00 0.00 3.08
1981 2513 8.920509 AAATTTAAATTGGCAATACGTAGGTC 57.079 30.769 14.05 0.00 0.00 3.85
1982 2514 7.633193 ATTTAAATTGGCAATACGTAGGTCA 57.367 32.000 14.05 0.41 0.00 4.02
1983 2515 7.633193 TTTAAATTGGCAATACGTAGGTCAT 57.367 32.000 14.05 0.00 0.00 3.06
1984 2516 7.633193 TTAAATTGGCAATACGTAGGTCATT 57.367 32.000 14.05 2.57 0.00 2.57
1985 2517 6.524101 AAATTGGCAATACGTAGGTCATTT 57.476 33.333 14.05 4.00 0.00 2.32
1986 2518 6.524101 AATTGGCAATACGTAGGTCATTTT 57.476 33.333 14.05 0.00 0.00 1.82
1987 2519 5.968528 TTGGCAATACGTAGGTCATTTTT 57.031 34.783 0.08 0.00 0.00 1.94
1988 2520 5.554822 TGGCAATACGTAGGTCATTTTTC 57.445 39.130 0.08 0.00 0.00 2.29
1989 2521 5.250200 TGGCAATACGTAGGTCATTTTTCT 58.750 37.500 0.08 0.00 0.00 2.52
1990 2522 5.353123 TGGCAATACGTAGGTCATTTTTCTC 59.647 40.000 0.08 0.00 0.00 2.87
1991 2523 5.490213 GCAATACGTAGGTCATTTTTCTCG 58.510 41.667 0.08 0.00 0.00 4.04
1992 2524 5.290158 GCAATACGTAGGTCATTTTTCTCGA 59.710 40.000 0.08 0.00 0.00 4.04
1993 2525 6.018994 GCAATACGTAGGTCATTTTTCTCGAT 60.019 38.462 0.08 0.00 0.00 3.59
1994 2526 7.337718 CAATACGTAGGTCATTTTTCTCGATG 58.662 38.462 0.08 0.00 0.00 3.84
1995 2527 5.068234 ACGTAGGTCATTTTTCTCGATGA 57.932 39.130 0.00 0.00 0.00 2.92
1996 2528 5.103000 ACGTAGGTCATTTTTCTCGATGAG 58.897 41.667 0.00 0.00 33.27 2.90
1997 2529 4.504461 CGTAGGTCATTTTTCTCGATGAGG 59.496 45.833 0.00 0.00 33.27 3.86
1998 2530 3.878778 AGGTCATTTTTCTCGATGAGGG 58.121 45.455 0.00 0.00 33.27 4.30
1999 2531 3.264450 AGGTCATTTTTCTCGATGAGGGT 59.736 43.478 0.00 0.00 33.27 4.34
2000 2532 3.623510 GGTCATTTTTCTCGATGAGGGTC 59.376 47.826 0.00 0.00 33.27 4.46
2001 2533 4.253685 GTCATTTTTCTCGATGAGGGTCA 58.746 43.478 0.00 0.00 33.27 4.02
2002 2534 4.695455 GTCATTTTTCTCGATGAGGGTCAA 59.305 41.667 0.00 0.00 33.27 3.18
2003 2535 4.695455 TCATTTTTCTCGATGAGGGTCAAC 59.305 41.667 0.00 0.00 0.00 3.18
2004 2536 2.363788 TTTCTCGATGAGGGTCAACG 57.636 50.000 0.57 0.57 42.82 4.10
2005 2537 1.254026 TTCTCGATGAGGGTCAACGT 58.746 50.000 6.50 0.00 42.22 3.99
2006 2538 2.118313 TCTCGATGAGGGTCAACGTA 57.882 50.000 6.50 0.00 42.22 3.57
2007 2539 1.741706 TCTCGATGAGGGTCAACGTAC 59.258 52.381 6.50 0.00 42.22 3.67
2008 2540 1.743958 CTCGATGAGGGTCAACGTACT 59.256 52.381 6.50 0.00 42.22 2.73
2009 2541 1.471287 TCGATGAGGGTCAACGTACTG 59.529 52.381 6.50 0.00 42.22 2.74
2010 2542 1.201647 CGATGAGGGTCAACGTACTGT 59.798 52.381 0.00 0.00 37.78 3.55
2011 2543 2.421073 CGATGAGGGTCAACGTACTGTA 59.579 50.000 0.00 0.00 37.78 2.74
2012 2544 3.066342 CGATGAGGGTCAACGTACTGTAT 59.934 47.826 0.00 0.00 37.78 2.29
2013 2545 4.439700 CGATGAGGGTCAACGTACTGTATT 60.440 45.833 0.00 0.00 37.78 1.89
2014 2546 4.182693 TGAGGGTCAACGTACTGTATTG 57.817 45.455 0.00 0.00 0.00 1.90
2015 2547 3.827876 TGAGGGTCAACGTACTGTATTGA 59.172 43.478 0.00 0.86 0.00 2.57
2016 2548 4.464951 TGAGGGTCAACGTACTGTATTGAT 59.535 41.667 7.02 0.00 34.98 2.57
2017 2549 5.046878 TGAGGGTCAACGTACTGTATTGATT 60.047 40.000 7.02 0.00 34.98 2.57
2018 2550 6.153170 TGAGGGTCAACGTACTGTATTGATTA 59.847 38.462 7.02 0.00 34.98 1.75
2019 2551 7.120923 AGGGTCAACGTACTGTATTGATTAT 57.879 36.000 7.02 0.00 34.98 1.28
2020 2552 7.208080 AGGGTCAACGTACTGTATTGATTATC 58.792 38.462 7.02 0.00 34.98 1.75
2021 2553 6.143438 GGGTCAACGTACTGTATTGATTATCG 59.857 42.308 7.02 0.00 34.98 2.92
2022 2554 6.914215 GGTCAACGTACTGTATTGATTATCGA 59.086 38.462 7.02 0.00 34.98 3.59
2023 2555 7.433131 GGTCAACGTACTGTATTGATTATCGAA 59.567 37.037 7.02 0.00 34.98 3.71
2024 2556 8.469902 GTCAACGTACTGTATTGATTATCGAAG 58.530 37.037 7.02 0.00 34.98 3.79
2025 2557 8.186163 TCAACGTACTGTATTGATTATCGAAGT 58.814 33.333 0.00 0.00 0.00 3.01
2026 2558 9.442033 CAACGTACTGTATTGATTATCGAAGTA 57.558 33.333 0.00 0.00 0.00 2.24
2032 2564 9.490379 ACTGTATTGATTATCGAAGTAATTCCC 57.510 33.333 0.00 0.00 0.00 3.97
2033 2565 8.842358 TGTATTGATTATCGAAGTAATTCCCC 57.158 34.615 0.00 0.00 0.00 4.81
2034 2566 8.433599 TGTATTGATTATCGAAGTAATTCCCCA 58.566 33.333 0.00 0.00 0.00 4.96
2035 2567 7.745620 ATTGATTATCGAAGTAATTCCCCAC 57.254 36.000 0.00 0.00 0.00 4.61
2036 2568 5.294356 TGATTATCGAAGTAATTCCCCACG 58.706 41.667 0.00 0.00 0.00 4.94
2037 2569 5.069383 TGATTATCGAAGTAATTCCCCACGA 59.931 40.000 0.00 0.00 0.00 4.35
2038 2570 2.953466 TCGAAGTAATTCCCCACGAG 57.047 50.000 0.00 0.00 0.00 4.18
2039 2571 2.173519 TCGAAGTAATTCCCCACGAGT 58.826 47.619 0.00 0.00 0.00 4.18
2040 2572 2.165030 TCGAAGTAATTCCCCACGAGTC 59.835 50.000 0.00 0.00 0.00 3.36
2041 2573 2.094390 CGAAGTAATTCCCCACGAGTCA 60.094 50.000 0.00 0.00 0.00 3.41
2042 2574 3.615592 CGAAGTAATTCCCCACGAGTCAA 60.616 47.826 0.00 0.00 0.00 3.18
2043 2575 4.320870 GAAGTAATTCCCCACGAGTCAAA 58.679 43.478 0.00 0.00 0.00 2.69
2044 2576 4.569719 AGTAATTCCCCACGAGTCAAAT 57.430 40.909 0.00 0.00 0.00 2.32
2045 2577 4.261801 AGTAATTCCCCACGAGTCAAATG 58.738 43.478 0.00 0.00 0.00 2.32
2046 2578 3.433306 AATTCCCCACGAGTCAAATGA 57.567 42.857 0.00 0.00 0.00 2.57
2047 2579 2.472695 TTCCCCACGAGTCAAATGAG 57.527 50.000 0.00 0.00 0.00 2.90
2048 2580 1.639722 TCCCCACGAGTCAAATGAGA 58.360 50.000 0.00 0.00 0.00 3.27
2049 2581 1.974957 TCCCCACGAGTCAAATGAGAA 59.025 47.619 0.00 0.00 0.00 2.87
2050 2582 2.370519 TCCCCACGAGTCAAATGAGAAA 59.629 45.455 0.00 0.00 0.00 2.52
2051 2583 3.146066 CCCCACGAGTCAAATGAGAAAA 58.854 45.455 0.00 0.00 0.00 2.29
2052 2584 3.568007 CCCCACGAGTCAAATGAGAAAAA 59.432 43.478 0.00 0.00 0.00 1.94
2091 2623 6.926280 TTTTAATTTGACATGCAGCGTTAG 57.074 33.333 0.00 0.00 0.00 2.34
2092 2624 2.549633 ATTTGACATGCAGCGTTAGC 57.450 45.000 0.00 0.00 45.58 3.09
2107 2639 5.576337 GCGTTAGCTGAATCGAATATGAA 57.424 39.130 0.00 0.00 41.01 2.57
2108 2640 6.158175 GCGTTAGCTGAATCGAATATGAAT 57.842 37.500 0.00 0.00 41.01 2.57
2109 2641 6.011879 GCGTTAGCTGAATCGAATATGAATG 58.988 40.000 0.00 0.00 41.01 2.67
2110 2642 6.128822 GCGTTAGCTGAATCGAATATGAATGA 60.129 38.462 0.00 0.00 41.01 2.57
2111 2643 7.569408 GCGTTAGCTGAATCGAATATGAATGAA 60.569 37.037 0.00 0.00 41.01 2.57
2112 2644 8.275632 CGTTAGCTGAATCGAATATGAATGAAA 58.724 33.333 0.00 0.00 0.00 2.69
2113 2645 9.935682 GTTAGCTGAATCGAATATGAATGAAAA 57.064 29.630 0.00 0.00 0.00 2.29
2115 2647 8.847444 AGCTGAATCGAATATGAATGAAAAAC 57.153 30.769 0.00 0.00 0.00 2.43
2116 2648 7.917505 AGCTGAATCGAATATGAATGAAAAACC 59.082 33.333 0.00 0.00 0.00 3.27
2117 2649 7.096885 GCTGAATCGAATATGAATGAAAAACCG 60.097 37.037 0.00 0.00 0.00 4.44
2118 2650 7.980062 TGAATCGAATATGAATGAAAAACCGA 58.020 30.769 0.00 0.00 0.00 4.69
2119 2651 8.454894 TGAATCGAATATGAATGAAAAACCGAA 58.545 29.630 0.00 0.00 0.00 4.30
2120 2652 9.450807 GAATCGAATATGAATGAAAAACCGAAT 57.549 29.630 0.00 0.00 0.00 3.34
2121 2653 9.450807 AATCGAATATGAATGAAAAACCGAATC 57.549 29.630 0.00 0.00 0.00 2.52
2122 2654 7.980062 TCGAATATGAATGAAAAACCGAATCA 58.020 30.769 0.00 0.00 0.00 2.57
2123 2655 8.620416 TCGAATATGAATGAAAAACCGAATCAT 58.380 29.630 0.00 0.00 35.39 2.45
2124 2656 9.236691 CGAATATGAATGAAAAACCGAATCATT 57.763 29.630 0.22 0.22 44.23 2.57
2128 2660 8.931385 ATGAATGAAAAACCGAATCATTTAGG 57.069 30.769 2.18 0.00 42.26 2.69
2129 2661 6.811170 TGAATGAAAAACCGAATCATTTAGGC 59.189 34.615 2.18 0.00 42.26 3.93
2130 2662 5.713792 TGAAAAACCGAATCATTTAGGCA 57.286 34.783 0.00 0.00 31.23 4.75
2131 2663 6.279513 TGAAAAACCGAATCATTTAGGCAT 57.720 33.333 0.00 0.00 31.23 4.40
2132 2664 6.696411 TGAAAAACCGAATCATTTAGGCATT 58.304 32.000 0.00 0.00 31.23 3.56
2133 2665 7.158021 TGAAAAACCGAATCATTTAGGCATTT 58.842 30.769 0.00 0.00 31.23 2.32
2134 2666 8.307483 TGAAAAACCGAATCATTTAGGCATTTA 58.693 29.630 0.00 0.00 31.23 1.40
2135 2667 8.474006 AAAAACCGAATCATTTAGGCATTTAC 57.526 30.769 0.00 0.00 31.23 2.01
2136 2668 5.767816 ACCGAATCATTTAGGCATTTACC 57.232 39.130 0.00 0.00 31.23 2.85
2137 2669 5.445964 ACCGAATCATTTAGGCATTTACCT 58.554 37.500 0.00 0.00 44.31 3.08
2138 2670 5.891551 ACCGAATCATTTAGGCATTTACCTT 59.108 36.000 0.00 0.00 41.50 3.50
2139 2671 6.039382 ACCGAATCATTTAGGCATTTACCTTC 59.961 38.462 0.00 0.00 41.50 3.46
2140 2672 6.438763 CGAATCATTTAGGCATTTACCTTCC 58.561 40.000 0.00 0.00 41.50 3.46
2141 2673 6.391227 AATCATTTAGGCATTTACCTTCCG 57.609 37.500 0.00 0.00 41.50 4.30
2142 2674 4.850680 TCATTTAGGCATTTACCTTCCGT 58.149 39.130 0.00 0.00 41.50 4.69
2143 2675 4.638421 TCATTTAGGCATTTACCTTCCGTG 59.362 41.667 0.00 0.00 41.50 4.94
2144 2676 3.985019 TTAGGCATTTACCTTCCGTGA 57.015 42.857 0.00 0.00 41.50 4.35
2145 2677 2.871096 AGGCATTTACCTTCCGTGAA 57.129 45.000 0.00 0.00 36.28 3.18
2146 2678 2.433436 AGGCATTTACCTTCCGTGAAC 58.567 47.619 0.00 0.00 36.28 3.18
2147 2679 1.471287 GGCATTTACCTTCCGTGAACC 59.529 52.381 0.00 0.00 0.00 3.62
2148 2680 2.433436 GCATTTACCTTCCGTGAACCT 58.567 47.619 0.00 0.00 0.00 3.50
2149 2681 2.817844 GCATTTACCTTCCGTGAACCTT 59.182 45.455 0.00 0.00 0.00 3.50
2150 2682 3.254903 GCATTTACCTTCCGTGAACCTTT 59.745 43.478 0.00 0.00 0.00 3.11
2151 2683 4.794169 CATTTACCTTCCGTGAACCTTTG 58.206 43.478 0.00 0.00 0.00 2.77
2152 2684 1.886886 TACCTTCCGTGAACCTTTGC 58.113 50.000 0.00 0.00 0.00 3.68
2153 2685 0.822121 ACCTTCCGTGAACCTTTGCC 60.822 55.000 0.00 0.00 0.00 4.52
2154 2686 0.537371 CCTTCCGTGAACCTTTGCCT 60.537 55.000 0.00 0.00 0.00 4.75
2155 2687 1.318576 CTTCCGTGAACCTTTGCCTT 58.681 50.000 0.00 0.00 0.00 4.35
2156 2688 1.681264 CTTCCGTGAACCTTTGCCTTT 59.319 47.619 0.00 0.00 0.00 3.11
2157 2689 1.770294 TCCGTGAACCTTTGCCTTTT 58.230 45.000 0.00 0.00 0.00 2.27
2158 2690 2.104170 TCCGTGAACCTTTGCCTTTTT 58.896 42.857 0.00 0.00 0.00 1.94
2179 2711 7.946655 TTTTTAATCATCTCGCATCTACGAT 57.053 32.000 0.00 0.00 42.02 3.73
2180 2712 7.946655 TTTTAATCATCTCGCATCTACGATT 57.053 32.000 0.00 0.00 42.02 3.34
2181 2713 7.946655 TTTAATCATCTCGCATCTACGATTT 57.053 32.000 0.00 0.00 42.02 2.17
2182 2714 9.471084 TTTTAATCATCTCGCATCTACGATTTA 57.529 29.630 0.00 0.00 42.02 1.40
2183 2715 9.639601 TTTAATCATCTCGCATCTACGATTTAT 57.360 29.630 0.00 0.00 42.02 1.40
2185 2717 8.848948 AATCATCTCGCATCTACGATTTATAG 57.151 34.615 0.00 0.00 42.02 1.31
2186 2718 6.258899 TCATCTCGCATCTACGATTTATAGC 58.741 40.000 0.00 0.00 42.02 2.97
2187 2719 5.881777 TCTCGCATCTACGATTTATAGCT 57.118 39.130 0.00 0.00 42.02 3.32
2188 2720 5.870444 TCTCGCATCTACGATTTATAGCTC 58.130 41.667 0.00 0.00 42.02 4.09
2189 2721 4.648970 TCGCATCTACGATTTATAGCTCG 58.351 43.478 0.00 4.91 37.09 5.03
2190 2722 3.238570 CGCATCTACGATTTATAGCTCGC 59.761 47.826 0.00 0.00 38.42 5.03
2191 2723 3.238570 GCATCTACGATTTATAGCTCGCG 59.761 47.826 0.00 0.00 38.42 5.87
2192 2724 4.648970 CATCTACGATTTATAGCTCGCGA 58.351 43.478 9.26 9.26 38.42 5.87
2193 2725 4.323537 TCTACGATTTATAGCTCGCGAG 57.676 45.455 31.37 31.37 38.42 5.03
2194 2726 3.992427 TCTACGATTTATAGCTCGCGAGA 59.008 43.478 38.74 20.29 38.42 4.04
2195 2727 3.833545 ACGATTTATAGCTCGCGAGAT 57.166 42.857 38.74 34.93 40.84 2.75
2196 2728 4.162096 ACGATTTATAGCTCGCGAGATT 57.838 40.909 38.74 26.34 40.84 2.40
2197 2729 4.547532 ACGATTTATAGCTCGCGAGATTT 58.452 39.130 38.74 29.18 40.84 2.17
2198 2730 4.982916 ACGATTTATAGCTCGCGAGATTTT 59.017 37.500 38.74 24.63 40.84 1.82
2199 2731 5.107837 ACGATTTATAGCTCGCGAGATTTTG 60.108 40.000 38.74 19.77 40.84 2.44
2200 2732 5.597813 ATTTATAGCTCGCGAGATTTTGG 57.402 39.130 38.74 12.83 40.84 3.28
2201 2733 2.890808 ATAGCTCGCGAGATTTTGGA 57.109 45.000 38.74 18.49 40.84 3.53
2202 2734 1.922570 TAGCTCGCGAGATTTTGGAC 58.077 50.000 38.74 18.32 40.84 4.02
2203 2735 0.037326 AGCTCGCGAGATTTTGGACA 60.037 50.000 38.74 0.00 40.84 4.02
2204 2736 0.796312 GCTCGCGAGATTTTGGACAA 59.204 50.000 38.74 0.00 40.84 3.18
2205 2737 1.196808 GCTCGCGAGATTTTGGACAAA 59.803 47.619 38.74 0.00 40.84 2.83
2206 2738 2.839474 CTCGCGAGATTTTGGACAAAC 58.161 47.619 32.06 0.00 40.84 2.93
2207 2739 1.533731 TCGCGAGATTTTGGACAAACC 59.466 47.619 3.71 0.00 35.24 3.27
2208 2740 1.535462 CGCGAGATTTTGGACAAACCT 59.465 47.619 0.00 0.00 39.86 3.50
2209 2741 2.412847 CGCGAGATTTTGGACAAACCTC 60.413 50.000 0.00 12.59 39.86 3.85
2210 2742 2.552315 GCGAGATTTTGGACAAACCTCA 59.448 45.455 18.29 0.33 39.86 3.86
2211 2743 3.609409 GCGAGATTTTGGACAAACCTCAC 60.609 47.826 18.29 10.44 39.86 3.51
2212 2744 3.058224 CGAGATTTTGGACAAACCTCACC 60.058 47.826 18.29 0.00 39.86 4.02
2213 2745 4.145052 GAGATTTTGGACAAACCTCACCT 58.855 43.478 15.57 0.00 39.86 4.00
2214 2746 5.313712 GAGATTTTGGACAAACCTCACCTA 58.686 41.667 15.57 0.00 39.86 3.08
2215 2747 5.070685 AGATTTTGGACAAACCTCACCTAC 58.929 41.667 0.00 0.00 39.86 3.18
2216 2748 4.513406 TTTTGGACAAACCTCACCTACT 57.487 40.909 0.00 0.00 39.86 2.57
2217 2749 4.513406 TTTGGACAAACCTCACCTACTT 57.487 40.909 0.00 0.00 39.86 2.24
2218 2750 4.513406 TTGGACAAACCTCACCTACTTT 57.487 40.909 0.00 0.00 39.86 2.66
2219 2751 4.513406 TGGACAAACCTCACCTACTTTT 57.487 40.909 0.00 0.00 39.86 2.27
2220 2752 4.457466 TGGACAAACCTCACCTACTTTTC 58.543 43.478 0.00 0.00 39.86 2.29
2221 2753 4.165372 TGGACAAACCTCACCTACTTTTCT 59.835 41.667 0.00 0.00 39.86 2.52
2222 2754 5.131067 GGACAAACCTCACCTACTTTTCTT 58.869 41.667 0.00 0.00 35.41 2.52
2223 2755 5.593095 GGACAAACCTCACCTACTTTTCTTT 59.407 40.000 0.00 0.00 35.41 2.52
2224 2756 6.451064 ACAAACCTCACCTACTTTTCTTTG 57.549 37.500 0.00 0.00 0.00 2.77
2225 2757 5.163550 ACAAACCTCACCTACTTTTCTTTGC 60.164 40.000 0.00 0.00 0.00 3.68
2226 2758 4.439253 ACCTCACCTACTTTTCTTTGCT 57.561 40.909 0.00 0.00 0.00 3.91
2227 2759 4.390264 ACCTCACCTACTTTTCTTTGCTC 58.610 43.478 0.00 0.00 0.00 4.26
2228 2760 4.141482 ACCTCACCTACTTTTCTTTGCTCA 60.141 41.667 0.00 0.00 0.00 4.26
2229 2761 4.821805 CCTCACCTACTTTTCTTTGCTCAA 59.178 41.667 0.00 0.00 0.00 3.02
2230 2762 5.299279 CCTCACCTACTTTTCTTTGCTCAAA 59.701 40.000 0.00 0.00 0.00 2.69
2231 2763 6.015940 CCTCACCTACTTTTCTTTGCTCAAAT 60.016 38.462 0.00 0.00 0.00 2.32
2232 2764 6.738114 TCACCTACTTTTCTTTGCTCAAATG 58.262 36.000 0.00 0.00 0.00 2.32
2233 2765 6.545666 TCACCTACTTTTCTTTGCTCAAATGA 59.454 34.615 0.00 0.00 0.00 2.57
2234 2766 7.068103 TCACCTACTTTTCTTTGCTCAAATGAA 59.932 33.333 0.00 0.72 0.00 2.57
2235 2767 7.869429 CACCTACTTTTCTTTGCTCAAATGAAT 59.131 33.333 0.00 0.00 0.00 2.57
2236 2768 8.084684 ACCTACTTTTCTTTGCTCAAATGAATC 58.915 33.333 0.00 0.00 0.00 2.52
2237 2769 6.998258 ACTTTTCTTTGCTCAAATGAATCG 57.002 33.333 0.00 0.00 0.00 3.34
2238 2770 6.738114 ACTTTTCTTTGCTCAAATGAATCGA 58.262 32.000 0.00 0.00 0.00 3.59
2239 2771 6.860023 ACTTTTCTTTGCTCAAATGAATCGAG 59.140 34.615 0.00 0.00 0.00 4.04
2240 2772 6.558771 TTTCTTTGCTCAAATGAATCGAGA 57.441 33.333 0.00 0.00 0.00 4.04
2241 2773 5.536554 TCTTTGCTCAAATGAATCGAGAC 57.463 39.130 0.00 0.00 0.00 3.36
2242 2774 4.996758 TCTTTGCTCAAATGAATCGAGACA 59.003 37.500 0.00 0.00 0.00 3.41
2243 2775 4.934075 TTGCTCAAATGAATCGAGACAG 57.066 40.909 0.00 0.00 0.00 3.51
2244 2776 3.930336 TGCTCAAATGAATCGAGACAGT 58.070 40.909 0.00 0.00 0.00 3.55
2245 2777 3.928992 TGCTCAAATGAATCGAGACAGTC 59.071 43.478 0.00 0.00 0.00 3.51
2246 2778 3.928992 GCTCAAATGAATCGAGACAGTCA 59.071 43.478 2.66 0.00 0.00 3.41
2247 2779 4.569966 GCTCAAATGAATCGAGACAGTCAT 59.430 41.667 2.66 0.00 32.09 3.06
2248 2780 5.064452 GCTCAAATGAATCGAGACAGTCATT 59.936 40.000 2.66 0.00 41.34 2.57
2249 2781 6.653273 TCAAATGAATCGAGACAGTCATTC 57.347 37.500 2.66 4.41 39.25 2.67
2250 2782 5.289434 TCAAATGAATCGAGACAGTCATTCG 59.711 40.000 2.66 4.58 39.25 3.34
2251 2783 4.639135 ATGAATCGAGACAGTCATTCGA 57.361 40.909 15.14 15.14 45.96 3.71
2257 2789 5.948992 TCGAGACAGTCATTCGATATGAT 57.051 39.130 10.12 0.00 38.32 2.45
2258 2790 6.319141 TCGAGACAGTCATTCGATATGATT 57.681 37.500 10.12 6.65 38.32 2.57
2259 2791 6.145535 TCGAGACAGTCATTCGATATGATTG 58.854 40.000 20.67 20.67 40.29 2.67
2260 2792 5.917447 CGAGACAGTCATTCGATATGATTGT 59.083 40.000 24.50 24.50 46.78 2.71
2261 2793 6.419116 CGAGACAGTCATTCGATATGATTGTT 59.581 38.462 24.77 18.71 45.04 2.83
2262 2794 7.474398 AGACAGTCATTCGATATGATTGTTG 57.526 36.000 24.77 16.95 45.04 3.33
2263 2795 6.481313 AGACAGTCATTCGATATGATTGTTGG 59.519 38.462 24.77 10.53 45.04 3.77
2264 2796 6.115446 ACAGTCATTCGATATGATTGTTGGT 58.885 36.000 21.51 8.92 43.40 3.67
2265 2797 6.599244 ACAGTCATTCGATATGATTGTTGGTT 59.401 34.615 21.51 8.69 43.40 3.67
2266 2798 7.128331 CAGTCATTCGATATGATTGTTGGTTC 58.872 38.462 17.14 4.34 33.03 3.62
2267 2799 7.011763 CAGTCATTCGATATGATTGTTGGTTCT 59.988 37.037 17.14 5.83 33.03 3.01
2268 2800 7.554118 AGTCATTCGATATGATTGTTGGTTCTT 59.446 33.333 11.63 0.00 31.41 2.52
2269 2801 7.852945 GTCATTCGATATGATTGTTGGTTCTTC 59.147 37.037 11.63 0.00 31.41 2.87
2270 2802 5.966636 TCGATATGATTGTTGGTTCTTCG 57.033 39.130 0.00 0.00 0.00 3.79
2271 2803 4.270084 TCGATATGATTGTTGGTTCTTCGC 59.730 41.667 0.00 0.00 0.00 4.70
2272 2804 4.033932 CGATATGATTGTTGGTTCTTCGCA 59.966 41.667 0.00 0.00 0.00 5.10
2273 2805 5.447144 CGATATGATTGTTGGTTCTTCGCAA 60.447 40.000 0.00 0.00 0.00 4.85
2274 2806 4.582701 ATGATTGTTGGTTCTTCGCAAA 57.417 36.364 0.00 0.00 0.00 3.68
2275 2807 4.377839 TGATTGTTGGTTCTTCGCAAAA 57.622 36.364 0.00 0.00 0.00 2.44
2276 2808 4.748892 TGATTGTTGGTTCTTCGCAAAAA 58.251 34.783 0.00 0.00 0.00 1.94
2299 2831 4.997905 AAGATATGATTGTTGGCGATCG 57.002 40.909 11.69 11.69 38.15 3.69
2300 2832 3.995199 AGATATGATTGTTGGCGATCGT 58.005 40.909 17.81 0.00 38.15 3.73
2301 2833 5.134202 AGATATGATTGTTGGCGATCGTA 57.866 39.130 17.81 3.37 39.82 3.43
2302 2834 5.538118 AGATATGATTGTTGGCGATCGTAA 58.462 37.500 17.81 9.78 39.28 3.18
2303 2835 6.166279 AGATATGATTGTTGGCGATCGTAAT 58.834 36.000 17.81 9.67 39.28 1.89
2304 2836 3.942539 TGATTGTTGGCGATCGTAATG 57.057 42.857 17.81 0.00 38.15 1.90
2305 2837 3.526534 TGATTGTTGGCGATCGTAATGA 58.473 40.909 17.81 6.08 38.15 2.57
2306 2838 4.126437 TGATTGTTGGCGATCGTAATGAT 58.874 39.130 17.81 10.06 41.06 2.45
2307 2839 5.293560 TGATTGTTGGCGATCGTAATGATA 58.706 37.500 17.81 0.00 37.47 2.15
2308 2840 5.755861 TGATTGTTGGCGATCGTAATGATAA 59.244 36.000 17.81 4.61 37.47 1.75
2309 2841 6.426633 TGATTGTTGGCGATCGTAATGATAAT 59.573 34.615 17.81 9.01 37.47 1.28
2310 2842 6.612247 TTGTTGGCGATCGTAATGATAATT 57.388 33.333 17.81 0.00 37.47 1.40
2311 2843 6.612247 TGTTGGCGATCGTAATGATAATTT 57.388 33.333 17.81 0.00 37.47 1.82
2312 2844 7.022055 TGTTGGCGATCGTAATGATAATTTT 57.978 32.000 17.81 0.00 37.47 1.82
2313 2845 7.476667 TGTTGGCGATCGTAATGATAATTTTT 58.523 30.769 17.81 0.00 37.47 1.94
2360 2892 8.816640 AATTACTGGATGTTTTCATGAACAAC 57.183 30.769 7.89 15.10 42.29 3.32
2361 2893 5.850557 ACTGGATGTTTTCATGAACAACA 57.149 34.783 24.94 24.94 42.29 3.33
2362 2894 6.409524 ACTGGATGTTTTCATGAACAACAT 57.590 33.333 29.05 29.05 42.29 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.541437 CGAGCATATGCACGTCGC 59.459 61.111 31.23 12.94 46.99 5.19
12 13 0.743345 TACTGTCTAGCGAGCGAGCA 60.743 55.000 9.01 2.18 40.15 4.26
43 44 4.773149 AGAAGAAGGATTAGTTGACCGAGT 59.227 41.667 0.00 0.00 0.00 4.18
92 99 4.736896 GTGGAGCCGTCGTCACCC 62.737 72.222 0.00 0.00 0.00 4.61
94 101 3.547249 TTCGTGGAGCCGTCGTCAC 62.547 63.158 0.00 0.00 0.00 3.67
95 102 3.263503 CTTCGTGGAGCCGTCGTCA 62.264 63.158 0.00 0.00 0.00 4.35
138 145 3.443925 CTCTGACCTGCCGCTCGA 61.444 66.667 0.00 0.00 0.00 4.04
152 171 3.456365 ATGGTCGCGCTGCTCTCT 61.456 61.111 5.56 0.00 0.00 3.10
357 390 0.249911 GGTGAGTCTTCGCTGGTGTT 60.250 55.000 0.00 0.00 34.23 3.32
369 402 3.142174 CAGGGAAGAAACTTGGTGAGTC 58.858 50.000 0.00 0.00 37.72 3.36
371 404 3.071602 TCTCAGGGAAGAAACTTGGTGAG 59.928 47.826 0.00 0.00 33.04 3.51
395 444 2.196749 AGCGCATAGTGTTCTCGATTG 58.803 47.619 11.47 0.00 0.00 2.67
397 446 2.159240 TCAAGCGCATAGTGTTCTCGAT 60.159 45.455 11.47 0.00 0.00 3.59
398 447 1.201414 TCAAGCGCATAGTGTTCTCGA 59.799 47.619 11.47 0.00 0.00 4.04
399 448 1.629013 TCAAGCGCATAGTGTTCTCG 58.371 50.000 11.47 0.00 0.00 4.04
402 451 2.416547 ACACATCAAGCGCATAGTGTTC 59.583 45.455 11.47 0.00 36.91 3.18
406 455 2.813754 ACAAACACATCAAGCGCATAGT 59.186 40.909 11.47 0.00 0.00 2.12
408 457 2.810852 TCACAAACACATCAAGCGCATA 59.189 40.909 11.47 0.00 0.00 3.14
410 459 1.002576 CTCACAAACACATCAAGCGCA 60.003 47.619 11.47 0.00 0.00 6.09
411 460 1.664016 CCTCACAAACACATCAAGCGC 60.664 52.381 0.00 0.00 0.00 5.92
537 628 4.029809 CCCCGAACTCCACACCCC 62.030 72.222 0.00 0.00 0.00 4.95
538 629 3.246880 ACCCCGAACTCCACACCC 61.247 66.667 0.00 0.00 0.00 4.61
585 679 0.748005 AGCGATTTCCATCCAACCCG 60.748 55.000 0.00 0.00 0.00 5.28
780 888 7.060421 GGTTTTATAGATGAGGGACCATTTCA 58.940 38.462 0.00 0.00 0.00 2.69
826 935 5.695818 ACGAAAAATATCCGGTTTCAACAG 58.304 37.500 13.14 1.95 32.00 3.16
902 1012 2.419297 GGAAGATGATGTGGCGAGTTCT 60.419 50.000 0.00 0.00 0.00 3.01
920 1030 7.013823 AGAAGAAGATGAAGATGAGTTGGAA 57.986 36.000 0.00 0.00 0.00 3.53
955 1068 0.396417 CTCCGTCCTGGGTGAGAGAT 60.396 60.000 0.00 0.00 38.76 2.75
1011 1126 2.741092 GTGTGGAGACGCCCTGAA 59.259 61.111 0.00 0.00 41.24 3.02
1237 1358 2.653115 CGTGCTGAGACTGCTGGA 59.347 61.111 0.00 0.00 0.00 3.86
1315 1442 3.332187 TGATCCCTGACGATATCCTCTCT 59.668 47.826 0.00 0.00 0.00 3.10
1384 1530 1.517242 CTGGTTCTGAGCCTGACAAC 58.483 55.000 11.95 0.00 0.00 3.32
1410 1557 3.575256 AGCCTTGCTGATTTGTTGATTCA 59.425 39.130 0.00 0.00 37.57 2.57
1509 2004 1.743772 GCCCAAGTCTCACGCACATAT 60.744 52.381 0.00 0.00 0.00 1.78
1613 2109 1.446272 GTCCACCTCTTCCTTCGCG 60.446 63.158 0.00 0.00 0.00 5.87
1758 2281 1.081509 CGTGGCATGGTTTTGACCG 60.082 57.895 0.00 0.00 0.00 4.79
1792 2322 1.409790 TCGTCCCTCAAACGACTTCAA 59.590 47.619 0.00 0.00 43.65 2.69
1830 2360 7.992295 ACCAGAAAAACCTAGTCCCTTAATTA 58.008 34.615 0.00 0.00 0.00 1.40
1927 2459 2.267324 GCTTTCAGGAGCGAGGCT 59.733 61.111 0.00 0.00 43.88 4.58
1928 2460 2.046892 TGCTTTCAGGAGCGAGGC 60.047 61.111 0.00 0.00 45.64 4.70
1929 2461 0.459934 CTCTGCTTTCAGGAGCGAGG 60.460 60.000 0.00 0.00 45.64 4.63
1930 2462 1.083242 GCTCTGCTTTCAGGAGCGAG 61.083 60.000 11.54 11.54 45.64 5.03
1931 2463 1.079543 GCTCTGCTTTCAGGAGCGA 60.080 57.895 0.00 0.00 45.64 4.93
1932 2464 1.360194 CTGCTCTGCTTTCAGGAGCG 61.360 60.000 9.15 1.97 45.64 5.03
1933 2465 0.036577 TCTGCTCTGCTTTCAGGAGC 60.037 55.000 7.16 7.16 40.57 4.70
1934 2466 2.348660 CTTCTGCTCTGCTTTCAGGAG 58.651 52.381 0.00 0.00 40.69 3.69
1935 2467 1.002888 CCTTCTGCTCTGCTTTCAGGA 59.997 52.381 0.00 0.00 40.69 3.86
1936 2468 1.002888 TCCTTCTGCTCTGCTTTCAGG 59.997 52.381 0.00 0.00 40.69 3.86
1937 2469 2.469274 TCCTTCTGCTCTGCTTTCAG 57.531 50.000 0.00 0.00 41.67 3.02
1938 2470 2.936919 TTCCTTCTGCTCTGCTTTCA 57.063 45.000 0.00 0.00 0.00 2.69
1939 2471 4.780275 AATTTCCTTCTGCTCTGCTTTC 57.220 40.909 0.00 0.00 0.00 2.62
1940 2472 6.655078 TTAAATTTCCTTCTGCTCTGCTTT 57.345 33.333 0.00 0.00 0.00 3.51
1941 2473 6.655078 TTTAAATTTCCTTCTGCTCTGCTT 57.345 33.333 0.00 0.00 0.00 3.91
1942 2474 6.847421 ATTTAAATTTCCTTCTGCTCTGCT 57.153 33.333 0.00 0.00 0.00 4.24
1943 2475 6.312180 CCAATTTAAATTTCCTTCTGCTCTGC 59.688 38.462 10.77 0.00 0.00 4.26
1944 2476 6.312180 GCCAATTTAAATTTCCTTCTGCTCTG 59.688 38.462 10.77 0.00 0.00 3.35
1945 2477 6.014327 TGCCAATTTAAATTTCCTTCTGCTCT 60.014 34.615 10.77 0.00 0.00 4.09
1946 2478 6.165577 TGCCAATTTAAATTTCCTTCTGCTC 58.834 36.000 10.77 0.00 0.00 4.26
1947 2479 6.112927 TGCCAATTTAAATTTCCTTCTGCT 57.887 33.333 10.77 0.00 0.00 4.24
1948 2480 6.799926 TTGCCAATTTAAATTTCCTTCTGC 57.200 33.333 10.77 6.24 0.00 4.26
1949 2481 8.594687 CGTATTGCCAATTTAAATTTCCTTCTG 58.405 33.333 10.77 0.00 0.00 3.02
1950 2482 8.311109 ACGTATTGCCAATTTAAATTTCCTTCT 58.689 29.630 10.77 0.00 0.00 2.85
1951 2483 8.474006 ACGTATTGCCAATTTAAATTTCCTTC 57.526 30.769 10.77 0.46 0.00 3.46
1952 2484 9.581099 CTACGTATTGCCAATTTAAATTTCCTT 57.419 29.630 10.77 0.00 0.00 3.36
1953 2485 8.194769 CCTACGTATTGCCAATTTAAATTTCCT 58.805 33.333 10.77 0.00 0.00 3.36
1954 2486 7.977293 ACCTACGTATTGCCAATTTAAATTTCC 59.023 33.333 10.77 5.80 0.00 3.13
1955 2487 8.920509 ACCTACGTATTGCCAATTTAAATTTC 57.079 30.769 10.77 6.81 0.00 2.17
1956 2488 8.524487 TGACCTACGTATTGCCAATTTAAATTT 58.476 29.630 10.77 0.00 0.00 1.82
1957 2489 8.057536 TGACCTACGTATTGCCAATTTAAATT 57.942 30.769 7.64 7.64 0.00 1.82
1958 2490 7.633193 TGACCTACGTATTGCCAATTTAAAT 57.367 32.000 0.00 0.00 0.00 1.40
1959 2491 7.633193 ATGACCTACGTATTGCCAATTTAAA 57.367 32.000 0.00 0.00 0.00 1.52
1960 2492 7.633193 AATGACCTACGTATTGCCAATTTAA 57.367 32.000 0.00 0.00 0.00 1.52
1961 2493 7.633193 AAATGACCTACGTATTGCCAATTTA 57.367 32.000 0.00 0.00 0.00 1.40
1962 2494 6.524101 AAATGACCTACGTATTGCCAATTT 57.476 33.333 0.00 0.00 0.00 1.82
1963 2495 6.524101 AAAATGACCTACGTATTGCCAATT 57.476 33.333 0.00 0.00 0.00 2.32
1964 2496 6.377146 AGAAAAATGACCTACGTATTGCCAAT 59.623 34.615 0.00 0.00 0.00 3.16
1965 2497 5.708230 AGAAAAATGACCTACGTATTGCCAA 59.292 36.000 0.00 0.00 0.00 4.52
1966 2498 5.250200 AGAAAAATGACCTACGTATTGCCA 58.750 37.500 0.00 0.00 0.00 4.92
1967 2499 5.501897 CGAGAAAAATGACCTACGTATTGCC 60.502 44.000 0.00 0.00 0.00 4.52
1968 2500 5.290158 TCGAGAAAAATGACCTACGTATTGC 59.710 40.000 0.00 0.00 0.00 3.56
1969 2501 6.880822 TCGAGAAAAATGACCTACGTATTG 57.119 37.500 0.00 0.00 0.00 1.90
1970 2502 7.262772 TCATCGAGAAAAATGACCTACGTATT 58.737 34.615 0.00 0.00 0.00 1.89
1971 2503 6.802608 TCATCGAGAAAAATGACCTACGTAT 58.197 36.000 0.00 0.00 0.00 3.06
1972 2504 6.198650 TCATCGAGAAAAATGACCTACGTA 57.801 37.500 0.00 0.00 0.00 3.57
1973 2505 5.068234 TCATCGAGAAAAATGACCTACGT 57.932 39.130 0.00 0.00 0.00 3.57
1974 2506 4.504461 CCTCATCGAGAAAAATGACCTACG 59.496 45.833 0.00 0.00 0.00 3.51
1975 2507 4.811557 CCCTCATCGAGAAAAATGACCTAC 59.188 45.833 0.00 0.00 0.00 3.18
1976 2508 4.469945 ACCCTCATCGAGAAAAATGACCTA 59.530 41.667 0.00 0.00 0.00 3.08
1977 2509 3.264450 ACCCTCATCGAGAAAAATGACCT 59.736 43.478 0.00 0.00 0.00 3.85
1978 2510 3.610911 ACCCTCATCGAGAAAAATGACC 58.389 45.455 0.00 0.00 0.00 4.02
1979 2511 4.253685 TGACCCTCATCGAGAAAAATGAC 58.746 43.478 0.00 0.00 0.00 3.06
1980 2512 4.551702 TGACCCTCATCGAGAAAAATGA 57.448 40.909 0.00 0.00 0.00 2.57
1981 2513 4.436050 CGTTGACCCTCATCGAGAAAAATG 60.436 45.833 0.00 0.00 40.81 2.32
1982 2514 3.684788 CGTTGACCCTCATCGAGAAAAAT 59.315 43.478 0.00 0.00 40.81 1.82
1983 2515 3.064207 CGTTGACCCTCATCGAGAAAAA 58.936 45.455 0.00 0.00 40.81 1.94
1984 2516 2.036733 ACGTTGACCCTCATCGAGAAAA 59.963 45.455 9.15 0.00 40.81 2.29
1985 2517 1.616865 ACGTTGACCCTCATCGAGAAA 59.383 47.619 9.15 0.00 40.81 2.52
1986 2518 1.254026 ACGTTGACCCTCATCGAGAA 58.746 50.000 9.15 0.00 40.81 2.87
1987 2519 1.741706 GTACGTTGACCCTCATCGAGA 59.258 52.381 9.15 0.00 40.81 4.04
1988 2520 1.743958 AGTACGTTGACCCTCATCGAG 59.256 52.381 9.15 0.00 40.81 4.04
1989 2521 1.471287 CAGTACGTTGACCCTCATCGA 59.529 52.381 9.15 0.00 40.81 3.59
1990 2522 1.201647 ACAGTACGTTGACCCTCATCG 59.798 52.381 0.00 2.01 43.12 3.84
1991 2523 4.650754 ATACAGTACGTTGACCCTCATC 57.349 45.455 0.00 0.00 0.00 2.92
1992 2524 4.464951 TCAATACAGTACGTTGACCCTCAT 59.535 41.667 0.00 0.00 0.00 2.90
1993 2525 3.827876 TCAATACAGTACGTTGACCCTCA 59.172 43.478 0.00 0.00 0.00 3.86
1994 2526 4.445452 TCAATACAGTACGTTGACCCTC 57.555 45.455 0.00 0.00 0.00 4.30
1995 2527 5.416271 AATCAATACAGTACGTTGACCCT 57.584 39.130 0.00 0.00 34.98 4.34
1996 2528 6.143438 CGATAATCAATACAGTACGTTGACCC 59.857 42.308 0.00 0.00 34.98 4.46
1997 2529 6.914215 TCGATAATCAATACAGTACGTTGACC 59.086 38.462 0.00 0.00 34.98 4.02
1998 2530 7.903452 TCGATAATCAATACAGTACGTTGAC 57.097 36.000 0.00 0.00 34.98 3.18
1999 2531 8.186163 ACTTCGATAATCAATACAGTACGTTGA 58.814 33.333 0.00 7.95 36.42 3.18
2000 2532 8.336498 ACTTCGATAATCAATACAGTACGTTG 57.664 34.615 0.00 0.00 0.00 4.10
2006 2538 9.490379 GGGAATTACTTCGATAATCAATACAGT 57.510 33.333 0.00 0.00 31.75 3.55
2007 2539 8.936864 GGGGAATTACTTCGATAATCAATACAG 58.063 37.037 0.00 0.00 31.75 2.74
2008 2540 8.433599 TGGGGAATTACTTCGATAATCAATACA 58.566 33.333 0.00 0.00 31.75 2.29
2009 2541 8.718734 GTGGGGAATTACTTCGATAATCAATAC 58.281 37.037 0.00 0.00 31.75 1.89
2010 2542 7.601130 CGTGGGGAATTACTTCGATAATCAATA 59.399 37.037 0.00 0.00 31.75 1.90
2011 2543 6.426937 CGTGGGGAATTACTTCGATAATCAAT 59.573 38.462 0.00 0.00 31.75 2.57
2012 2544 5.756347 CGTGGGGAATTACTTCGATAATCAA 59.244 40.000 0.00 0.00 31.75 2.57
2013 2545 5.069383 TCGTGGGGAATTACTTCGATAATCA 59.931 40.000 0.00 0.00 31.75 2.57
2014 2546 5.535333 TCGTGGGGAATTACTTCGATAATC 58.465 41.667 0.00 0.00 31.75 1.75
2015 2547 5.070047 ACTCGTGGGGAATTACTTCGATAAT 59.930 40.000 0.00 0.00 31.75 1.28
2016 2548 4.403432 ACTCGTGGGGAATTACTTCGATAA 59.597 41.667 0.00 0.00 31.75 1.75
2017 2549 3.956199 ACTCGTGGGGAATTACTTCGATA 59.044 43.478 0.00 0.00 31.75 2.92
2018 2550 2.764572 ACTCGTGGGGAATTACTTCGAT 59.235 45.455 0.00 0.00 31.75 3.59
2019 2551 2.165030 GACTCGTGGGGAATTACTTCGA 59.835 50.000 0.00 0.00 31.75 3.71
2020 2552 2.094390 TGACTCGTGGGGAATTACTTCG 60.094 50.000 0.00 0.00 31.75 3.79
2021 2553 3.604875 TGACTCGTGGGGAATTACTTC 57.395 47.619 0.00 0.00 0.00 3.01
2022 2554 4.360951 TTTGACTCGTGGGGAATTACTT 57.639 40.909 0.00 0.00 0.00 2.24
2023 2555 4.019681 TCATTTGACTCGTGGGGAATTACT 60.020 41.667 0.00 0.00 0.00 2.24
2024 2556 4.258543 TCATTTGACTCGTGGGGAATTAC 58.741 43.478 0.00 0.00 0.00 1.89
2025 2557 4.224147 TCTCATTTGACTCGTGGGGAATTA 59.776 41.667 0.00 0.00 0.00 1.40
2026 2558 3.009033 TCTCATTTGACTCGTGGGGAATT 59.991 43.478 0.00 0.00 0.00 2.17
2027 2559 2.571653 TCTCATTTGACTCGTGGGGAAT 59.428 45.455 0.00 0.00 0.00 3.01
2028 2560 1.974957 TCTCATTTGACTCGTGGGGAA 59.025 47.619 0.00 0.00 0.00 3.97
2029 2561 1.639722 TCTCATTTGACTCGTGGGGA 58.360 50.000 0.00 0.00 0.00 4.81
2030 2562 2.472695 TTCTCATTTGACTCGTGGGG 57.527 50.000 0.00 0.00 0.00 4.96
2031 2563 4.829064 TTTTTCTCATTTGACTCGTGGG 57.171 40.909 0.00 0.00 0.00 4.61
2067 2599 6.128956 GCTAACGCTGCATGTCAAATTAAAAA 60.129 34.615 0.00 0.00 0.00 1.94
2068 2600 5.344665 GCTAACGCTGCATGTCAAATTAAAA 59.655 36.000 0.00 0.00 0.00 1.52
2069 2601 4.856487 GCTAACGCTGCATGTCAAATTAAA 59.144 37.500 0.00 0.00 0.00 1.52
2070 2602 4.155826 AGCTAACGCTGCATGTCAAATTAA 59.844 37.500 0.00 0.00 46.86 1.40
2071 2603 3.689161 AGCTAACGCTGCATGTCAAATTA 59.311 39.130 0.00 0.00 46.86 1.40
2072 2604 2.489329 AGCTAACGCTGCATGTCAAATT 59.511 40.909 0.00 0.00 46.86 1.82
2073 2605 2.086869 AGCTAACGCTGCATGTCAAAT 58.913 42.857 0.00 0.00 46.86 2.32
2074 2606 1.522668 AGCTAACGCTGCATGTCAAA 58.477 45.000 0.00 0.00 46.86 2.69
2075 2607 3.231734 AGCTAACGCTGCATGTCAA 57.768 47.368 0.00 0.00 46.86 3.18
2085 2617 5.576337 TTCATATTCGATTCAGCTAACGC 57.424 39.130 0.00 0.00 0.00 4.84
2086 2618 7.338440 TCATTCATATTCGATTCAGCTAACG 57.662 36.000 0.00 0.00 0.00 3.18
2087 2619 9.935682 TTTTCATTCATATTCGATTCAGCTAAC 57.064 29.630 0.00 0.00 0.00 2.34
2089 2621 9.935682 GTTTTTCATTCATATTCGATTCAGCTA 57.064 29.630 0.00 0.00 0.00 3.32
2090 2622 7.917505 GGTTTTTCATTCATATTCGATTCAGCT 59.082 33.333 0.00 0.00 0.00 4.24
2091 2623 7.096885 CGGTTTTTCATTCATATTCGATTCAGC 60.097 37.037 0.00 0.00 0.00 4.26
2092 2624 8.122330 TCGGTTTTTCATTCATATTCGATTCAG 58.878 33.333 0.00 0.00 0.00 3.02
2093 2625 7.980062 TCGGTTTTTCATTCATATTCGATTCA 58.020 30.769 0.00 0.00 0.00 2.57
2094 2626 8.835467 TTCGGTTTTTCATTCATATTCGATTC 57.165 30.769 0.00 0.00 0.00 2.52
2095 2627 9.450807 GATTCGGTTTTTCATTCATATTCGATT 57.549 29.630 0.00 0.00 0.00 3.34
2096 2628 8.620416 TGATTCGGTTTTTCATTCATATTCGAT 58.380 29.630 0.00 0.00 0.00 3.59
2097 2629 7.980062 TGATTCGGTTTTTCATTCATATTCGA 58.020 30.769 0.00 0.00 0.00 3.71
2098 2630 8.786937 ATGATTCGGTTTTTCATTCATATTCG 57.213 30.769 0.00 0.00 0.00 3.34
2103 2635 7.492344 GCCTAAATGATTCGGTTTTTCATTCAT 59.508 33.333 0.00 0.00 38.73 2.57
2104 2636 6.811170 GCCTAAATGATTCGGTTTTTCATTCA 59.189 34.615 0.00 0.00 38.73 2.57
2105 2637 6.811170 TGCCTAAATGATTCGGTTTTTCATTC 59.189 34.615 0.00 0.00 38.73 2.67
2106 2638 6.696411 TGCCTAAATGATTCGGTTTTTCATT 58.304 32.000 0.00 0.00 40.78 2.57
2107 2639 6.279513 TGCCTAAATGATTCGGTTTTTCAT 57.720 33.333 0.00 0.00 0.00 2.57
2108 2640 5.713792 TGCCTAAATGATTCGGTTTTTCA 57.286 34.783 0.00 0.00 0.00 2.69
2109 2641 7.595311 AAATGCCTAAATGATTCGGTTTTTC 57.405 32.000 0.00 0.00 0.00 2.29
2110 2642 7.547722 GGTAAATGCCTAAATGATTCGGTTTTT 59.452 33.333 0.00 0.81 0.00 1.94
2111 2643 7.039270 GGTAAATGCCTAAATGATTCGGTTTT 58.961 34.615 0.00 1.07 0.00 2.43
2112 2644 6.379988 AGGTAAATGCCTAAATGATTCGGTTT 59.620 34.615 0.00 0.00 37.04 3.27
2113 2645 5.891551 AGGTAAATGCCTAAATGATTCGGTT 59.108 36.000 0.00 0.00 37.04 4.44
2114 2646 5.445964 AGGTAAATGCCTAAATGATTCGGT 58.554 37.500 0.00 0.00 37.04 4.69
2115 2647 6.391227 AAGGTAAATGCCTAAATGATTCGG 57.609 37.500 0.00 0.00 38.03 4.30
2116 2648 6.438763 GGAAGGTAAATGCCTAAATGATTCG 58.561 40.000 0.00 0.00 38.03 3.34
2117 2649 6.039382 ACGGAAGGTAAATGCCTAAATGATTC 59.961 38.462 0.00 0.00 38.03 2.52
2118 2650 5.891551 ACGGAAGGTAAATGCCTAAATGATT 59.108 36.000 0.00 0.00 38.03 2.57
2119 2651 5.299279 CACGGAAGGTAAATGCCTAAATGAT 59.701 40.000 0.00 0.00 38.03 2.45
2120 2652 4.638421 CACGGAAGGTAAATGCCTAAATGA 59.362 41.667 0.00 0.00 38.03 2.57
2121 2653 4.638421 TCACGGAAGGTAAATGCCTAAATG 59.362 41.667 0.00 0.00 38.03 2.32
2122 2654 4.850680 TCACGGAAGGTAAATGCCTAAAT 58.149 39.130 0.00 0.00 38.03 1.40
2123 2655 4.289238 TCACGGAAGGTAAATGCCTAAA 57.711 40.909 0.00 0.00 38.03 1.85
2124 2656 3.985019 TCACGGAAGGTAAATGCCTAA 57.015 42.857 0.00 0.00 38.03 2.69
2125 2657 3.602483 GTTCACGGAAGGTAAATGCCTA 58.398 45.455 0.00 0.00 38.03 3.93
2126 2658 2.433436 GTTCACGGAAGGTAAATGCCT 58.567 47.619 0.00 0.00 41.41 4.75
2127 2659 1.471287 GGTTCACGGAAGGTAAATGCC 59.529 52.381 0.00 0.00 0.00 4.40
2128 2660 2.433436 AGGTTCACGGAAGGTAAATGC 58.567 47.619 0.00 0.00 0.00 3.56
2129 2661 4.794169 CAAAGGTTCACGGAAGGTAAATG 58.206 43.478 0.00 0.00 0.00 2.32
2130 2662 3.254903 GCAAAGGTTCACGGAAGGTAAAT 59.745 43.478 0.00 0.00 0.00 1.40
2131 2663 2.619646 GCAAAGGTTCACGGAAGGTAAA 59.380 45.455 0.00 0.00 0.00 2.01
2132 2664 2.223745 GCAAAGGTTCACGGAAGGTAA 58.776 47.619 0.00 0.00 0.00 2.85
2133 2665 1.543871 GGCAAAGGTTCACGGAAGGTA 60.544 52.381 0.00 0.00 0.00 3.08
2134 2666 0.822121 GGCAAAGGTTCACGGAAGGT 60.822 55.000 0.00 0.00 0.00 3.50
2135 2667 0.537371 AGGCAAAGGTTCACGGAAGG 60.537 55.000 0.00 0.00 0.00 3.46
2136 2668 1.318576 AAGGCAAAGGTTCACGGAAG 58.681 50.000 0.00 0.00 0.00 3.46
2137 2669 1.770294 AAAGGCAAAGGTTCACGGAA 58.230 45.000 0.00 0.00 0.00 4.30
2138 2670 1.770294 AAAAGGCAAAGGTTCACGGA 58.230 45.000 0.00 0.00 0.00 4.69
2139 2671 2.595124 AAAAAGGCAAAGGTTCACGG 57.405 45.000 0.00 0.00 0.00 4.94
2155 2687 7.946655 ATCGTAGATGCGAGATGATTAAAAA 57.053 32.000 0.00 0.00 45.12 1.94
2156 2688 7.946655 AATCGTAGATGCGAGATGATTAAAA 57.053 32.000 0.00 0.00 45.12 1.52
2157 2689 7.946655 AAATCGTAGATGCGAGATGATTAAA 57.053 32.000 0.00 0.00 45.12 1.52
2159 2691 9.937175 CTATAAATCGTAGATGCGAGATGATTA 57.063 33.333 0.00 0.00 45.12 1.75
2160 2692 7.433719 GCTATAAATCGTAGATGCGAGATGATT 59.566 37.037 0.00 0.00 45.12 2.57
2161 2693 6.915300 GCTATAAATCGTAGATGCGAGATGAT 59.085 38.462 0.00 0.00 45.12 2.45
2162 2694 6.094186 AGCTATAAATCGTAGATGCGAGATGA 59.906 38.462 0.00 0.00 45.12 2.92
2163 2695 6.261859 AGCTATAAATCGTAGATGCGAGATG 58.738 40.000 0.00 0.00 45.12 2.90
2164 2696 6.443934 AGCTATAAATCGTAGATGCGAGAT 57.556 37.500 0.00 0.00 45.12 2.75
2165 2697 5.446073 CGAGCTATAAATCGTAGATGCGAGA 60.446 44.000 0.00 0.00 45.12 4.04
2166 2698 4.726229 CGAGCTATAAATCGTAGATGCGAG 59.274 45.833 0.00 0.00 45.12 5.03
2167 2699 4.648970 CGAGCTATAAATCGTAGATGCGA 58.351 43.478 0.00 0.00 45.12 5.10
2168 2700 3.238570 GCGAGCTATAAATCGTAGATGCG 59.761 47.826 7.77 0.00 45.12 4.73
2169 2701 3.238570 CGCGAGCTATAAATCGTAGATGC 59.761 47.826 0.00 0.00 45.12 3.91
2170 2702 4.648970 TCGCGAGCTATAAATCGTAGATG 58.351 43.478 3.71 0.00 45.12 2.90
2171 2703 4.630505 TCTCGCGAGCTATAAATCGTAGAT 59.369 41.667 30.97 0.00 45.12 1.98
2172 2704 3.992427 TCTCGCGAGCTATAAATCGTAGA 59.008 43.478 30.97 6.02 40.97 2.59
2173 2705 4.323537 TCTCGCGAGCTATAAATCGTAG 57.676 45.455 30.97 3.39 40.97 3.51
2174 2706 4.941325 ATCTCGCGAGCTATAAATCGTA 57.059 40.909 30.97 9.75 40.97 3.43
2175 2707 3.833545 ATCTCGCGAGCTATAAATCGT 57.166 42.857 30.97 3.78 40.97 3.73
2176 2708 5.301165 CAAAATCTCGCGAGCTATAAATCG 58.699 41.667 30.97 4.68 41.79 3.34
2177 2709 5.405571 TCCAAAATCTCGCGAGCTATAAATC 59.594 40.000 30.97 0.00 0.00 2.17
2178 2710 5.177696 GTCCAAAATCTCGCGAGCTATAAAT 59.822 40.000 30.97 15.27 0.00 1.40
2179 2711 4.506654 GTCCAAAATCTCGCGAGCTATAAA 59.493 41.667 30.97 13.47 0.00 1.40
2180 2712 4.049186 GTCCAAAATCTCGCGAGCTATAA 58.951 43.478 30.97 14.27 0.00 0.98
2181 2713 3.067601 TGTCCAAAATCTCGCGAGCTATA 59.932 43.478 30.97 14.68 0.00 1.31
2182 2714 2.159099 TGTCCAAAATCTCGCGAGCTAT 60.159 45.455 30.97 17.57 0.00 2.97
2183 2715 1.203758 TGTCCAAAATCTCGCGAGCTA 59.796 47.619 30.97 15.89 0.00 3.32
2184 2716 0.037326 TGTCCAAAATCTCGCGAGCT 60.037 50.000 30.97 19.86 0.00 4.09
2185 2717 0.796312 TTGTCCAAAATCTCGCGAGC 59.204 50.000 30.97 14.65 0.00 5.03
2186 2718 2.412847 GGTTTGTCCAAAATCTCGCGAG 60.413 50.000 30.03 30.03 35.97 5.03
2187 2719 1.533731 GGTTTGTCCAAAATCTCGCGA 59.466 47.619 9.26 9.26 35.97 5.87
2188 2720 1.535462 AGGTTTGTCCAAAATCTCGCG 59.465 47.619 0.00 0.00 39.02 5.87
2189 2721 2.552315 TGAGGTTTGTCCAAAATCTCGC 59.448 45.455 14.26 0.00 36.51 5.03
2190 2722 3.058224 GGTGAGGTTTGTCCAAAATCTCG 60.058 47.826 14.26 0.00 36.51 4.04
2191 2723 4.145052 AGGTGAGGTTTGTCCAAAATCTC 58.855 43.478 13.17 13.17 39.02 2.75
2192 2724 4.184649 AGGTGAGGTTTGTCCAAAATCT 57.815 40.909 0.00 0.00 39.02 2.40
2193 2725 5.070685 AGTAGGTGAGGTTTGTCCAAAATC 58.929 41.667 0.00 0.00 39.02 2.17
2194 2726 5.061721 AGTAGGTGAGGTTTGTCCAAAAT 57.938 39.130 0.00 0.00 39.02 1.82
2195 2727 4.513406 AGTAGGTGAGGTTTGTCCAAAA 57.487 40.909 0.00 0.00 39.02 2.44
2196 2728 4.513406 AAGTAGGTGAGGTTTGTCCAAA 57.487 40.909 0.00 0.00 39.02 3.28
2197 2729 4.513406 AAAGTAGGTGAGGTTTGTCCAA 57.487 40.909 0.00 0.00 39.02 3.53
2198 2730 4.165372 AGAAAAGTAGGTGAGGTTTGTCCA 59.835 41.667 0.00 0.00 39.02 4.02
2199 2731 4.715713 AGAAAAGTAGGTGAGGTTTGTCC 58.284 43.478 0.00 0.00 0.00 4.02
2200 2732 6.495706 CAAAGAAAAGTAGGTGAGGTTTGTC 58.504 40.000 0.00 0.00 0.00 3.18
2201 2733 5.163550 GCAAAGAAAAGTAGGTGAGGTTTGT 60.164 40.000 0.00 0.00 0.00 2.83
2202 2734 5.067805 AGCAAAGAAAAGTAGGTGAGGTTTG 59.932 40.000 0.00 0.00 0.00 2.93
2203 2735 5.201243 AGCAAAGAAAAGTAGGTGAGGTTT 58.799 37.500 0.00 0.00 0.00 3.27
2204 2736 4.793201 AGCAAAGAAAAGTAGGTGAGGTT 58.207 39.130 0.00 0.00 0.00 3.50
2205 2737 4.141482 TGAGCAAAGAAAAGTAGGTGAGGT 60.141 41.667 0.00 0.00 0.00 3.85
2206 2738 4.389374 TGAGCAAAGAAAAGTAGGTGAGG 58.611 43.478 0.00 0.00 0.00 3.86
2207 2739 6.377327 TTTGAGCAAAGAAAAGTAGGTGAG 57.623 37.500 0.00 0.00 0.00 3.51
2208 2740 6.545666 TCATTTGAGCAAAGAAAAGTAGGTGA 59.454 34.615 1.92 0.00 33.32 4.02
2209 2741 6.738114 TCATTTGAGCAAAGAAAAGTAGGTG 58.262 36.000 1.92 0.00 33.32 4.00
2210 2742 6.959639 TCATTTGAGCAAAGAAAAGTAGGT 57.040 33.333 1.92 0.00 33.32 3.08
2211 2743 7.272084 CGATTCATTTGAGCAAAGAAAAGTAGG 59.728 37.037 1.92 0.00 33.32 3.18
2212 2744 8.017373 TCGATTCATTTGAGCAAAGAAAAGTAG 58.983 33.333 1.92 0.38 33.32 2.57
2213 2745 7.870826 TCGATTCATTTGAGCAAAGAAAAGTA 58.129 30.769 1.92 0.00 33.32 2.24
2214 2746 6.738114 TCGATTCATTTGAGCAAAGAAAAGT 58.262 32.000 1.92 0.00 33.32 2.66
2215 2747 7.060403 GTCTCGATTCATTTGAGCAAAGAAAAG 59.940 37.037 1.92 5.91 35.99 2.27
2216 2748 6.857964 GTCTCGATTCATTTGAGCAAAGAAAA 59.142 34.615 1.92 0.00 35.99 2.29
2217 2749 6.017192 TGTCTCGATTCATTTGAGCAAAGAAA 60.017 34.615 1.92 0.00 35.99 2.52
2218 2750 5.469760 TGTCTCGATTCATTTGAGCAAAGAA 59.530 36.000 1.92 6.18 35.99 2.52
2219 2751 4.996758 TGTCTCGATTCATTTGAGCAAAGA 59.003 37.500 1.92 0.00 35.99 2.52
2220 2752 5.106791 ACTGTCTCGATTCATTTGAGCAAAG 60.107 40.000 1.92 0.00 35.99 2.77
2221 2753 4.756642 ACTGTCTCGATTCATTTGAGCAAA 59.243 37.500 0.00 0.00 35.99 3.68
2222 2754 4.318332 ACTGTCTCGATTCATTTGAGCAA 58.682 39.130 0.00 0.00 35.99 3.91
2223 2755 3.928992 GACTGTCTCGATTCATTTGAGCA 59.071 43.478 0.00 0.00 35.99 4.26
2224 2756 3.928992 TGACTGTCTCGATTCATTTGAGC 59.071 43.478 9.51 0.00 35.99 4.26
2225 2757 6.507614 CGAATGACTGTCTCGATTCATTTGAG 60.508 42.308 12.48 0.00 40.28 3.02
2226 2758 5.289434 CGAATGACTGTCTCGATTCATTTGA 59.711 40.000 12.48 0.00 40.28 2.69
2227 2759 5.289434 TCGAATGACTGTCTCGATTCATTTG 59.711 40.000 15.45 7.31 38.51 2.32
2228 2760 5.410924 TCGAATGACTGTCTCGATTCATTT 58.589 37.500 15.45 0.00 38.51 2.32
2229 2761 4.998788 TCGAATGACTGTCTCGATTCATT 58.001 39.130 15.45 3.74 40.57 2.57
2230 2762 4.639135 TCGAATGACTGTCTCGATTCAT 57.361 40.909 15.45 0.00 36.72 2.57
2235 2767 5.948992 ATCATATCGAATGACTGTCTCGA 57.051 39.130 19.85 19.85 44.87 4.04
2236 2768 5.917447 ACAATCATATCGAATGACTGTCTCG 59.083 40.000 14.56 10.82 33.89 4.04
2237 2769 7.307042 CCAACAATCATATCGAATGACTGTCTC 60.307 40.741 18.20 0.00 37.49 3.36
2238 2770 6.481313 CCAACAATCATATCGAATGACTGTCT 59.519 38.462 18.20 10.37 37.49 3.41
2239 2771 6.258727 ACCAACAATCATATCGAATGACTGTC 59.741 38.462 18.20 0.00 37.49 3.51
2240 2772 6.115446 ACCAACAATCATATCGAATGACTGT 58.885 36.000 14.56 14.56 39.75 3.55
2241 2773 6.609237 ACCAACAATCATATCGAATGACTG 57.391 37.500 13.64 13.64 32.23 3.51
2242 2774 7.050377 AGAACCAACAATCATATCGAATGACT 58.950 34.615 10.97 0.54 0.00 3.41
2243 2775 7.251704 AGAACCAACAATCATATCGAATGAC 57.748 36.000 10.97 0.00 0.00 3.06
2244 2776 7.254421 CGAAGAACCAACAATCATATCGAATGA 60.254 37.037 11.09 11.09 0.00 2.57
2245 2777 6.847792 CGAAGAACCAACAATCATATCGAATG 59.152 38.462 0.00 0.00 0.00 2.67
2246 2778 6.511767 GCGAAGAACCAACAATCATATCGAAT 60.512 38.462 0.00 0.00 0.00 3.34
2247 2779 5.220586 GCGAAGAACCAACAATCATATCGAA 60.221 40.000 0.00 0.00 0.00 3.71
2248 2780 4.270084 GCGAAGAACCAACAATCATATCGA 59.730 41.667 0.00 0.00 0.00 3.59
2249 2781 4.033932 TGCGAAGAACCAACAATCATATCG 59.966 41.667 0.00 0.00 0.00 2.92
2250 2782 5.484173 TGCGAAGAACCAACAATCATATC 57.516 39.130 0.00 0.00 0.00 1.63
2251 2783 5.895636 TTGCGAAGAACCAACAATCATAT 57.104 34.783 0.00 0.00 0.00 1.78
2252 2784 5.697473 TTTGCGAAGAACCAACAATCATA 57.303 34.783 0.00 0.00 0.00 2.15
2253 2785 4.582701 TTTGCGAAGAACCAACAATCAT 57.417 36.364 0.00 0.00 0.00 2.45
2254 2786 4.377839 TTTTGCGAAGAACCAACAATCA 57.622 36.364 0.00 0.00 0.00 2.57
2275 2807 6.183360 ACGATCGCCAACAATCATATCTTTTT 60.183 34.615 16.60 0.00 0.00 1.94
2276 2808 5.296780 ACGATCGCCAACAATCATATCTTTT 59.703 36.000 16.60 0.00 0.00 2.27
2277 2809 4.816385 ACGATCGCCAACAATCATATCTTT 59.184 37.500 16.60 0.00 0.00 2.52
2278 2810 4.380531 ACGATCGCCAACAATCATATCTT 58.619 39.130 16.60 0.00 0.00 2.40
2279 2811 3.995199 ACGATCGCCAACAATCATATCT 58.005 40.909 16.60 0.00 0.00 1.98
2280 2812 5.839262 TTACGATCGCCAACAATCATATC 57.161 39.130 16.60 0.00 0.00 1.63
2281 2813 5.931724 TCATTACGATCGCCAACAATCATAT 59.068 36.000 16.60 0.00 0.00 1.78
2282 2814 5.293560 TCATTACGATCGCCAACAATCATA 58.706 37.500 16.60 0.00 0.00 2.15
2283 2815 4.126437 TCATTACGATCGCCAACAATCAT 58.874 39.130 16.60 0.00 0.00 2.45
2284 2816 3.526534 TCATTACGATCGCCAACAATCA 58.473 40.909 16.60 0.00 0.00 2.57
2285 2817 4.732285 ATCATTACGATCGCCAACAATC 57.268 40.909 16.60 0.00 0.00 2.67
2286 2818 6.801539 ATTATCATTACGATCGCCAACAAT 57.198 33.333 16.60 9.10 35.39 2.71
2287 2819 6.612247 AATTATCATTACGATCGCCAACAA 57.388 33.333 16.60 2.11 35.39 2.83
2288 2820 6.612247 AAATTATCATTACGATCGCCAACA 57.388 33.333 16.60 0.78 35.39 3.33
2289 2821 7.908193 AAAAATTATCATTACGATCGCCAAC 57.092 32.000 16.60 0.00 35.39 3.77
2334 2866 9.906660 GTTGTTCATGAAAACATCCAGTAATTA 57.093 29.630 10.35 0.00 38.83 1.40
2335 2867 8.420222 TGTTGTTCATGAAAACATCCAGTAATT 58.580 29.630 21.75 0.00 38.83 1.40
2336 2868 7.950512 TGTTGTTCATGAAAACATCCAGTAAT 58.049 30.769 21.75 0.00 38.83 1.89
2337 2869 7.340122 TGTTGTTCATGAAAACATCCAGTAA 57.660 32.000 21.75 6.82 38.83 2.24
2338 2870 6.951062 TGTTGTTCATGAAAACATCCAGTA 57.049 33.333 21.75 7.30 38.83 2.74
2339 2871 5.850557 TGTTGTTCATGAAAACATCCAGT 57.149 34.783 21.75 0.00 38.83 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.