>input_sequence_82631
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--------------------------------------------------------------------------ATGGGC
CTGTCTTCAGGGCGTC-TCCACACGGGAGCTAGCGATGGCTGCGAGTGCCTGCTGCTGGTCGTACACCGTTGTGATGGCG
CGCTCCACTCCGCAGTTGTCAAAGTAGTGCACGGTGGCCATGTGCCACTGCCCACGCCCTCG-----CACGGCAGCGCCG
GCGCATTCATAGGGAAACAGGGTCGCACATCACGAAGGGCGCCATGCACATGCCATCTCGGGCTCCTGCGTTGCGGCTCC
AGCAGTCTCAGCACGGCTGCACGGCTCGCCGGACCTGTTGCCGCTGCCGTCGGCACGGCGGGGC------AGGAGCGGGA
GAGAGAG--GATATCGTCAGGGATCAGG-------CTTGGAACCAGAGCGGGAGTTAG----------------------
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>chr5B_1_TraesCS5B01G230900
GCGACGTGCATATGCTCGCTCGCTAGACAGTAGCCACCTCCCAACTCGGTCAACTAATCCTTCTTCTGGTGGGCGTG---
---CACGGGCACGGACACGGGTGACGACGGCTCCACGAAGCCGACGCGGGGCGAGGGCTCGCCGTCG------AG-----
-CGGCAGGTCAGAGAGCAGCGCGACCATGCGGCGGGCGCTGAGGGAGCGCGCCGGGGGGAGGCAGAGGGTCTTGGTGGTG
GAGAAGACGGAGGAGGACTGGGCGAGGATGAGGTACACCAGCGCCTGCACCAGCACGAACAGCCCCACCTTGAGCAGCGC
CCCGTGCTGGCTCACCATCTCGAACTCCATT--------------CCGACTCCCGAGCTTTGATCACACAACACCAGCGA
AGACTCACCA---AGT---------TTCT----TCCCTGAGACCAATCGAGAACACTATGC-------------------
----------GCTTGATGTGTTTGTGAGGT-CTGGAGGCGCGGGGCGCGCGCTTATATAACGG-----CGAGACGCCGGT
TTGACCGCTGCCGGGGTG-------AAGGTGCAATGCAAAGATGCTTCGTCGATCGGTCGCCAACTTGGGG--TGTGGAG
TTCGGGGTGGTTCGGCGAAAGGC-AAGGCCAGTTCCACCGGGTTGGATGGAAATC----------GCTCGACCTGCTCCG
TGCTCTGCTCACCGCTCACGTGTGCAGAGATTATAA---TATTACTTGAGTCGCTCTCACGGAAGTGCTCTCAAGAAATA
GAATAATATTGCTTCTATTTTGTGAAAAGATAATATTATTTATAGGGATAAGTATA-TTTTTCGTCCCTCAACTTTACCG
ATAGTATT-GAAATGGTCCCTCATCTATAAAACCAGAAAAATCTAGTCCCTTAACTGTTGAAACCGGATATTTTTCGTCC
CTCAAATGGATTC-AGGTGGTTTTGTGCTGATGTGGCATGGTTTTGACCACAGAACTCGCCACATCATCTTCCAACTCAT
CTTCATCTTCTTCTTCT---ATCTTCTA--TCTCTCACCCAGGACGGAGAAGAATCCGATGACACATGGTTACCATGGGC
CTGTCTTCAGGGCGTC-TCCACACGGGAGCTAGCGATGGCTGCGAGTGCCTGCTGCTGGTCGTACACCGTTGTGATGGCG
CGCTCCACTCCGCAGTTGTCAAAGTAGTGCACGGTGGCCATGTGCCACTGCCCACGCCCTCG-----CACGGCAGCGCCG
GCGCATTCATAGGGAAACAGGGTCGCACATCACGAAGGGCGCCATGCACATGCCATCTCGGGCTCCTGCGTTGCGGCTCC
AGCAGTCTCAGCACGGCTGCACGGCTCGCCGGACCTGTTGCCGCTGCCGTCGGCACGGCGGGGC------AGGAGCGGGA
GAGAGAG--GATATCGTCAGGGATCAGG-------CTTGGAACCAGAGCGGGAGTTAGCTAGGGGC----------AGCA
GCAGGAGCAG-TTGTCAGGCTCAGAACCAGCGCGGGT-------------------------------------GAATCA
ACAAATCAGCAAGGCTCGAGACGAACCTTTAG------------------------------------------------
--------------------------------------------------------------------------------
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---------------------CAAACA-TAGCCAGCTTTTG-CGCGCGTGCCTACGTTGTGTTTCTAGCCGACTGGTTTG
TGTATATGTGCGTGAGACTTGGGCGTTTCCGG-CCGGGGCAAAATCAATTTGCTTGGCTAGCTTCGCACAGGAGGATCGA
TCAAGTTGCGTATGGATGTATCATTAGCCGCGAAGGAAGAGGTGGACGAGTACGAAGGTGAGGCCACGGCTGCCGGAGGC
AGCGGAGCAGACGTGCGGTGAGGTGCTTCCCTGTGCATAGAGAGAGAG------GGGA--------------------AG
A-AGACAAAGGTGAGCTGGACGACGATGTGGCGAGGTCAGCG-------GTCAAAACCATGCCACGTCAGCACAAAACCA
CTTGAAGTCGTTTGAGGGACGAAAAATATCCGGTTTCAATAATTAAGGGACTAGGTTTTTCTGGTTTTGTAGTTGAGGGA
CCATTTCTAA--ACTATCGATAAAGTTGAGGGACAAAAAATATACTTATCCCTGACGGAGCCTCGCTCCTGAAAGCAGAG
CAGAAGGAAATTTAAATTGGCAATACGTAGGTCATTTTTCTCGATGAGGGTCAACGTACTGTATTGATTATCGAAGTAAT
TCCCCACGAGTCAAATGAGAAAAAAAATCTGTAACTTTTTTTTAATTTGACATGCAGCGTTAGCTGAATCGAATATGAAT
GAAAAACCGAATCATTTAGGCATTTACCTTCCGTGAACCTTTGCCTTTTTTAATCATCTCGCATCTACGATTTATAGCTC
GCGAGATTTTGGACAAACCTCACCTACTTTTCTTTGCTCAAATGAATCGAGACAGTCATTCGATATGATTGTTGGTTCTT
CGCAAAAAAAAGATATGATTGTTGGCGATCGTAATGATAATTTTTTATGAAAAAAATGATACTTATAATTACTGGATGTT
TTCATGAACAACAT
>chr5D_4
---ACGTGCATACGCTCGCTCGCTAGACAGTAGCCACCTCCCAGCTCTGTCAACTAATCCTTCTTCTGGTGGGCGTG---
---CACGGGCACGGGC------GACGACGGCTCCACGGAGACGGCGCGGGGCGAGGGTTCGCCGCCG------AG-----
-CGGCAGGTCGGAGAGCAGTGCGACCATGCGGCGGGCGCTGAGGGAGCGCGCCGGCGGGAGGCCGAGGGTCTTGGTGGTG
GAGAAGACGGAGGAGGACTGGGCGAGGATGAGGTACACCAGCGCCTGCACCAGCACGAACAGCCCCACCTTCAGCAGCGC
CCCGTGCTGGCTCGCCATCTCGAACTCCATT--------------CCGACTCCCGAGCTTTGATCACACGACACCCGCGA
AAATTCACCA---AGT---------TTCT----TCCCTGAGACTCGGTTCTAACC-----------------AGGATATG
----TTGCTTGCTTGCTGTGTTTGGGAGGT-CGG--GGTGTGGGCTGCGCGCCTATATAAAGG-----TGAGACGCCGCT
TTGACCTCTGCCGGGGTG-------AGGGTGCAATGCAAAGATGCTTCGTCGATCGGTCGCCAACTT--GG--TGTGGAG
TTCGGGGTGGTTCGGCGAAAGGC-AACGCCAGTTCCACGGGGTTGGATGGAAATC----------GCTCGACCTGCTCCG
TGCTCTGCTCACCGCTCACGTGTGCAGAGATTATAA---TATTACTTGAGTCGCTCTCA---------------------
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>chr5A_47
----------------------------------------------CGGTCAACTAATCCTCCTTCTGGTGGGCGTGGGC
GGCCAGGGCCACGGGC------GACGACGGCTCCACGATGCCGGCGCGGGGCGAGGGCTCGCCGCCG------AG-----
-CGGCAGGTCGGAGAGCAGCGCGACCATGCGGCGGGCGCTGTGGGAGCGCGCCGGGGGAGGGCAGAGGGTCTTGGTGGTG
GAGAAGACGGAGGAGGACTGGGCGAGGATGAGGTACACCAGCGCCTGCACCAGCACGAACAGCCCCACCTTCAGCAAGGC
ACCGTGCTGGCTCGCCATCTCCAGCTCCATT--------------CCGACTCCCGAGCTTTGATCACACGGCACCAGCGA
--ATTCACCAAGCAGT---------TTCT----TCCCTGAGTGGATAAGAATGATCCACTCAGAATCTCTCGAGAATATG
----TTGCTTGTTTGATGTGTTTGTGAGGT-CTGGCGGTGTGGGCTACGCGCTTATATAACGG-----CGAGACGCCGGC
TTGACCGCCGCCGGGGTG-------AGGGTGCAATGCAAAGTTGCTTCGTCGATCGGTCGCCAACTT--GGGGTGTGGAG
TTTCGGGTGGTTCGGCGAAAGGC-AACGCCAGTTCCACGGGGTTGGATGGAAACC----------GCTCGACCTGCTCCG
TGCTCTGCTCACCGCTCACGTGTGCAGAGATTATAGTATTATTACTCGAGTCTCTCTCACGGAAGTGCTCTCAAGAAATG
TAATAT--TTGCTTCTATTTTTTGAAAAGATACTATTATTTATA------------------------------------
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>chr5B_51
--------------------------------------------------CAACGAATCCTTCTTCTGGTGGGCG-----
----AGGGGCACGGGC------GACGACGGCTCCACGGAGACGGCGCGGGGCGAGGGCTCGCCGCCCAGCAGCAG-----
-CGGCAGGTCGGAGATCAGCGCGACCATGCGGCGGGCGCTGAGGGAGCGCGCCGGGGGGAGGCCGAGGGTCTTGGTGGTG
GAGAAGACTGAGGAGGACTGGGCAAGGATGAGGTACACCAGCGCCTGCACCAACACGAACAGCCCCACTTTGAGCAGCGC
CCCTTGTTGGCTCATCATTTCGAACTCCATGTCAACTGATTAACGCCCGAGCTC-----TTGATCACACGAAACCAGTGA
--GTTCACGAGGCAGT---------CTCTACCTTCCCTGAGAGTCCGAGACTGGTC-----AGAATCTCTCAAGAATGTG
CTGCTTGCTTGATTGATGTGTTTGTGAAGT-CTGGAGGTGCGGGCCGCGCGCTTATATAACGG-----CGAGACGCCGGT
TTGACCGCTGCCGGGGTCAGGGC--AGGGTGCAACGCAAAGATGCTTCGCCGGCCAGTC--------------------G
TTTGGGGTGGTTCGGCGAAAGGCGGACGCCAGTCCCACGGGGTTGGAATTGGATGGACGCTGGCTGCTCGACCTGCTCCG
TGCTCCGCTCACCGCTCACGTGTGCAAGGATTATAA---TATTGCTCGGGTTGCTCTCACGGA-----------------
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--------------
>chr5D_52
---------------------------------------------------AACTAATCCTTCTTCTGGTGGGCG-----
----AGGGGTACGGGC------GACGGCGGCTCCACGAAGGCGGCGCGGGGCGAGGGCTCGCCGCCG------AGCGGCA
GCGGCAGGTCGGAGAGCAGCGCGACCATGCGGCGGGCGCTGAGGGAGCGCGCCGGGGGCAGACAGAGGGTCTTGGTGGTG
GAGAAGACGGAGGAGGACTGGGCGAGGATGAGGTACACCAGCGCCTGCACCAGCACGAACAGCCCCACCTTCAGCAGCGC
CCCGTGCTGGCTCACCATCTCCAACTCCATA--------------CCCGAGCTC-----TTGATCACACGAAACCAGCGA
--CTTCACCAAGCAGTCTCTTCTCTTCCT----TCCCTGAGAGGCCGAGACTGATC-----AGAGTCCCACAAGAATGTG
CTGCTTGCTTGATTGATGTGTTTGTGAGGTTCTGGAGGTGCGGGGGGCGCGCTTATATAACGGCGAGACGAGACGCCGGT
CTGACCGCTGCCGGGGTAGGGACGTAGGGTGCAGCGCAAAGATGCTTCGCCGGTCAGTC--------------------G
TTTGGGGTGGTTCGGCGAAAGGC-GACGCCAGTCCCACGGGGTTGGAATTGGATGGACGCCA----CTCGACCTGCTCCG
TGCTCCGCTCACCGCTCACGGGTGCAAGGATTAAAA---TATTGCTCGGGTTGCTCTCACGGA-----------------
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>chr1B_729
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----------------------------------ATTTTTTAAAGGGAAAAGTATA-TTTTTCGTCCCTCAACTTTACCG
ATAGTATA-GAAATGGTCTTTCAATTACAAAACCATGAAAACCTAGTCCCTCAATTGTTGAAACCGGATATTTTTCGTCC
CTCAAACGGCTTA-AGGTGG-TTTGTGCTGATGTGGCATGGTTTTGACCACTGAACTTGCCACATCATCGTCCACCTCAT
CTTCGC---CTTCTTCT---ATCTTCTCTCTCTC--ACCCAGGCCGGAGAAGAATCCGGTAACACATGGTTACCATGAGC
CTGACC----------------------------------------TGCCTGCTGCTCGTCGTACACCGTTGTGACGGCG
CGCTCCACTCTGCGGTTGTCAAAGTAGTGCACGGTGGCCATGT-CCACTGTCCACGCCCTCG-----GACGCTAGCGCTA
ACGCATCCACAGGGAAGTAGGGTCGCACATCACGAAGGGCGCCATGCAAATGCCATCTCGGGCTCCTGTGTTGCGGCACC
AGCAGTCTGAGCACGGCTGTACGGCTCGCCGGACCTGTCGCCGCTGCCGTCGGCACGGTGGGGC------GGGAGCGGGA
GCAAGAGGAGATATCATCAGGGATTAGG-------CTTGGAACCAGAGCGGGAGTGAGCTAGGGGCCGACGGG-GCAGCA
GCGGGAGCAT-TTGTCAGGCACAGAACCAGCGCGGGAGTGAGCTAGGGGATCCCCTGTAAACAACACTCGTGAAGAATCA
ACAAATCAACAAGGCTCGAGACGAACCTTTAG------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CAAACAATAGCCAGCCTTTG-CATGC-TGCCTACGTTGTGTTTCCAGCCGACTGGTTTG
TGTGTATGTGCGTGAGACTT---CGTTTCTGGCCGGGGGC--AATCAATTTGCTTGGCTAGCTTCGCATAGGAGGATCGA
TCAAGTTGCGTATAGATGTATCAGCAGCAGCGAAGGAAGAGGTGGACGAGTACGAAGGTGAGGCCACGGCTGCCGGAGGC
AGCGGAGCAGGCGTTCGGTGAGGTGCTTCCCTGTGCACACAGAGAGAG--------GA--------------------AG
A-AGACGAAGGTGACGTGGACGATGATGTGGCAAGGTCAGTG-------GTCAAAACCATGCCATTTCAGCACAAAACCA
CCTTAAGCCGTTTGAGGGACAGAAAATATCCGGTTTCAACAATTGAGGGACTAGGTTTTTCTGGTTTTATAGTTGAGGGA
CCATTTCTAA--ACTATCGGTAAAGTTGAGGGACAAAAAATATACTTATCCCT---------------------------
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--------------
>chr2B_730
TTATTGTA------------------------------------------------------------------------
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-------------------------------------------AGGGATAAGTATA-TTTTTCGTCCCTCAACTTTACCG
ATAGTATA-GA-ATGATCCCTCAACTACAAAACCAGGAAAATCTAGTCCCTCAATTGTTGAAACCGGATATTTTTCGTCC
CTCAAACGGATTC-AGGTGGTTTTGTGCTGACGTGGCATGGTTTTGACCACTGAACTCGCCACATCATCGTCCAACTCAT
CTTCATCTTCCTCTTCT---ATCTTCTCTCTCTC--ACCCAGGCCGGAGAAGAATCCGATGACACATGGTTACCATGGGC
-TGGCCTCAGGGTGTC-TCCACACGGGAGCTAGCGGCGGCTATGAGTGCCTGCTGCTGGTCGTACACCGTTGTGACGGCG
CGTTGCACTCCCCAGTTGTCAAATTAGTGCACGGTGGCCATGTGTCACTGCCCACGCCCTCG-----GACGGCAGCGCTG
GCACATTCACAGGGAAACAGGGTCGCACATCACGAAGGGCGCCATGCACATGCCATCTCGGGCTCCTGCGGTGCGGCACC
AGCAGTCTCAGCACGGCTGCACGGCTCGCCGGACCTGTTGCCGCTGCCGTTGGCCGAGCGGGGC------AGGAGCGGGA
GCGAGAG--GATATCGTCAGGGATCAGG-------CCTGGAACCAGAGCGGGAGTTAGCTGGGGGCCGACGGG-GCAGCA
GCGGGAGCAT-TTGTCAGGCTCAGAACCAGCGCGACAGTGAGCTAGGGGATCCCCTGTAAACAACAGTCGTTAAGAATCC
ACAAACCAGCAAGGCTCGAGACGAACCTTTAG------------------------------------------------
--------------------------------------------------------------------------------
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---------------------CAAACA-TAGCCAGATTTTG-TGTGCGTGCCTACGTTGTGTTTCTAGCCGACTGGTTTG
TGTGTATGTGCGTGAGACTTGGGCGTTTCCGG-CCGGGGCCAAATCAATTTACTTGG-----------CAGGAGGATCGA
TCAAGTTGCGTATGGATGTATCATTAGCAGCAAAGGAAGAGGTGGACGAGTACAAAGGTGAGGCCACGGTTGCCGGAGGC
AGCGGAGCAGACGTGTGGTGAGGTGCTTCCCTGTGCATAGAGAGAGAA--AGAGGAGA--------------------AG
A-AGACAAAAGTGAGCTGGACAACGATGTGGCGAGGTCAGTGGTCAAAAGTCAAAACCATGCCACATCAGCACAAAACCA
CCTGAAGTCGTTTGAGGGACAAAAAATATCCGGTTTCAACAATTAAGGGACTAGGTTTTCCTGGTTTTGTAGTTGAGGGA
CCATTTCTAA--ACTATCGGTAAAGTTGAGGGACGAAAAATATACTTATCCCT---------------------------
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>chr5A_735
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----------------------------------------TATAGGGAAAAGTATA-TTTTTCGCCCCTCAATTTTACCA
ATGGTATA-GAAATGGTCTCTCAACTACAAAACCAAAAAAATCTAGTCCTTCAATTATTAAAACCGGATATTTTTCGTCC
CTCAAATGGATTC-AGATGGTTTTGTGCTGACGTGGCATGGTTTTGACCACTGATCTTGCCACATCATCGTCCAACTCAT
CTTCGTCTTCTTCTTCT---ATCTTCTCTCTCTC--ACCCAGGCCGGAGAAGTC-------ACACATGGTTACCATGGGC
CTGGCCTCAGGGCGTC-TCCACACGGGAGCTAGCGGTGGCTGCGAGTGCCTGCTGCTGGTCGTACACCGTTGTGACGGCG
CGCTCCACTCCGTGGTTGTCAAAGTAGTGCACGGTGGCCATGTGCCAGTGCCCACGTCCTCG-----GACGGCAGCGCCA
GCGCATTCACAGGGAAACAGGGTCGCACATCACGAAGGGCGCCATGCACATGCCATCTCGGGCTCCTGCGTCGCGGCACC
AGCAGTCTCAGCACGGCTGCATGGCTCGCTGGACCTG-------------------------------------------
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>chr5B_737
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------------------------------------------TAGGGGTAAGTATATTTTTTCGTCCCTCAACTTTACCG
ATAGTATAAGA-ATGATCCCTCAACTACAAAACCAGGAAAATCTAGTCCCTCAATTGTTGAAACCGGATATTTTTCGTCC
TTCAAACGGATTC-AGGTGGTTTTGTGCTGACGTGGCATGGCTTTGACCACTGCGCTCGCCACATCATGGTCCAACTCAT
CTTCATCTTCCTCTTCT---ATCTTCTCTCTCTCTCACCCAGGCCGGAGAAGAATCCGATGACACATGGTTACCATGGGC
CTGGCCTCAGGGCGTC-TCCACACG-------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------GTGCGGCACC
AGCGGTCTCAGCACGGCTGCACGGCTCGCCGGACCTGTTGCCGCTGCCGTCGGCCGAGCGGGGC------AGGAGCTGGA
GCGAGAG--GATATCGTCAGGGATCAGG-------CTTGGAACCAAAGCGGGAGTTAGCTGGGGGCCGACGGG-GCAGCA
GCGGGAGCAT-TTGTCAGGCTCAGAACCAGCGCGGCAGTGAGCTAGGGGATCCCCTGTAAACAACAGTCGTTAAGAATCC
ACAAACCAGCAAGGCTCAAGACGAACCTTTAG------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------CAAACA-TAGCCAGATTTTG-----------TACGTTGTGTTTCTAGCCGACTGGTTTG
TGTGTATGTGCGTGAGACTTGGGCGTTTCCGG-CCGGGGCCAAATCAATTTACTTGG-----------CAGGAGGATCGA
TCAAGTTGCGTATGGATGTATCATTAGCAGCGAAGGAAGAGGTGGACGAGTACAAAGGTGAGGCCACGGTTGCCGGAGGC
AGCGGAGCAGACGTGTGGTGAGGTGCTTCCCTGTGCATAGAGAGAGAGAGAGAGGAGA--------------------AG
A-AGACAAAAGTGAGCTGGACGACGATGTGGCGAGGTCAGTGGTCAAAAGTCAAAACCATGCCACATCAGCACAAAACCA
CCTGAAGTC-----------------------------------------------------------------------
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--------------
>chr3B_738
--------------------------------------------------------------------------------
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-------------------------------------------AGGGAAAAGTATA-TTTTTCGTCCCTCAATTTTATCA
ATGGTATCGAA-ATAGTCCCTCAACTACAAAAACAGTAAAACCTAGTCCCTTAATTGTTGAAACCGGATATTTTTCATCC
CTCAAACGGCTTC-AAGTGGTTTTGCGCTGACGTGGCAGGGTTTTGACCACTGACTTCGCCACATCATCATCCACCTCAT
CTTCGTCTTCTTCTTCTTCTGTCTTCTCTCTCTC--ACCCAGGCAGGAGAACAATCCGATGACACATGGTTACCATGGGC
CTGGCCTCAGGGCG-C-TCCACACGGGAGCTAGCGGTGGCTGCGAGTGCCTGCTGCTGGTCACACACCGCGGTGCCGGGG
CACTCCACTCTGCGGCTGTAAAAGTAGTGCACGGTGGCGATGTGCCACTGCCCACGCCCTCGATCGCGACACCAGCGT--
--GCATCCACAGGGACACATAGTCGCACATCACGAAGGGTGCCATGCGCATGCCGTCTCGGGCTCTTGCGTTACGGCACC
AGCAGCCTGAGCACGGCTGCACGGCTCGCCGGACCTATCGCCGCTGTCGTCGGCATGGCGGGGT------GGGAGAGAGA
GCGAGAGGATAAC---------ATCAGG-------CTCGGAACCAGAGCGGGAGTGAGCTAGGGGC--------------
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--------------
>chr6D_738
--------------------------------------------------------------------------------
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-------------------------------------------AGGGAAAAGTATA-TTTTTCGTCCCTTAACTTTACCG
ATGGTCTAGAA-ATGGTTCCTCAACTAT-AAACCAGGAAAACCTAGTCCCTCAATTCTTAAAATCAAGTAATTTTCGTCC
CTCAAAAGGCTTC-AGGTGGTTTTGTGCTGACATGGCATAGTTTAGTCCACTGAGCTCGCCACATCATCATCCACCCTAT
CTTCGTCTTCTTCC---TCTATCTTCTCTCACTT--GCCCAGGCCGGAGAAGAATCCGATGACACATGGTTACCATGTGC
CTGGCCTCAGGGCG-C-TGCACGCGGGAGCTAGTGGTGACTGCGAGTGCCTGCTACCGGTTGTATACCGTGGTCATGGTG
CG------------------------------------------------------------------------------
---------------------------CATCACGAAGGGCACCATGCGCATGCCATCTCGGGCTCCTGCATTGCGGCAAC
AGTAGTCTGAGCACGGCTGCATGGCTCGCTGGACCTATTGTCGTTGCTGTCGGCACGGCCAGGT------GGGAGCGGGA
GCGACAGGACATC---------GCCAGG-------CTCGGAATCAGAGCGGGAGTGAGCTTGGGGCGGATGGG-GCAGCA
GCAGGAGCATCTTATCAGGCTCAGAACCAGCGTGGGAGTGAGCTAGGGGATCCCATGTAAACAACAGTCGTGAAGAATCA
ACAAATCAACAAGGCTCGAGATGAAACTTTAG------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CAAACA-TAGCCAGCTTTTTCTGTGCGTGCCTATGTTGTGTTTCCAGCCCACTGGTTCG
TGTGTATGTGCGTGAGGGTTGGGCGTTTCTGG-CCGGGGGCAAATCAATTTGCTTGGCTAGCTCCGCATAGGAGGATCGA
TCAAGTTGCGTATGGCTGTATCATCAGCAGCGAAGGAAGAGGTGGACGAGCACGAAGGTGAGGCCAAGGCTGCCGGAGGC
AGCGGAGCAGACGTGCGGTGAGGTGCTTCCCTGCACACACACACACACACACAC----------------AC------AG
A-AGACGAAGATGAGGCGGACGACGATGTGGCGACGTCAGTT-------ATCAAAACCATGTCATGTCAGTACTAAACCA
CCTGAAGCCGTTTGAGGGACGAAAAATACCTGGTTTCAACAATTGAGGGACTAGGTTTTTCTGC-TTTGTAGTTGAGGAA
TCATTTCTAGAGACTATCTGTAAAGTTGAGGGTAGAAAAGTATACTTTTCCCT---------------------------
--------------------------------------------------------------------------------
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--------------
>chrUn_738
--------------------------------------------------------------------------------
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-------------------------------------------AGGGAAAAGTATA-TTTTTCATTCCTTAACTTTACCG
ATGGTCTAGAA-ATGGTTCCTCAACTAT-AAACCAGGAAAACCTAGTCCCTCAATTCTAAAAATCAAGTAATTTTCGTCC
CTCAAAAGGCTTC-AGGTTGTTTTGTGCTGACGTGGCATAGTTTAGTCCACTGAGCTCGCCACATCATCATCCACCTTAT
CTTCGTCTTCTTCC---TCTATCTTCTCTCACTT--GCCCAGGCCGGAGAAGAATCCGATGACACATGGTTACCATGTGC
CTGGCCTCAGGGCG-C-TGCACGCGGGAGCTAGTGGTGACTGCGAGTGCCTGCTACCGGTTGTATACCGTGGTCATGGTG
CG------------------------------------------------------------------------------
---------------------------CATCACGAAGGGCACCATGCGCATGCCATCTCGGGCTCCTGCATTGCGGCAAC
AGTAGTCTGAGCACGGCTGCATGGCTCGCTGGACCTATTGTCATTGCTGTCGGCACGGCCAGGT------GGGAGCGGGA
GCGAGAGGATATC---------GTCAGG-------CTCGGAATCAGAGCGGGAGTGAGCTTGGGGCGGAC-GG-GCAGCA
GCAGGAGCATCTTATCAGGCTCAGAACCAGCGTGGGAGTGAGCTAGGGGATCCCCTGTAAACAACAGTCGTGAAGAATCA
ACAAATCAACAAGGCTCGAGATGAAACTTTAG------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CAAACA-TAGCCAGCTTTTTCTGTGCGTGCCTATGTTGTGTTTCCAGCCCACTGGTTCG
TGTGTATGTGCGTGAGGGTTGGGCGTTTCTGG-CCGGGGGCAAATCAATTTGCTTGGCTAGCTCCGCATAGGAGGATCGA
TCAAGTTGCGTATGGCTGTATCATCAGCAGCGAAGGAAGAGGTGGACGAGCACGA-GGTGAGGCCAAGGCTGCCGGAGGC
AGCGGAGCAGACGTGC-GTGAGGTGCTTCCCTGCACACACACACACACACACAC----------------AGAGAGAGAG
A-AGACGAAGATGAGGCGGACGACGATGTGGCGACGTCAGTT-------ATCAAAACCATGTCATGTCAGTACAAAACCA
CCTGAAGCCGTTTGAGGGACGAAAACTATCTGGTTTCAACAATTGAGGGACTAGGTTTTTCCGC-TTTGTAGTTGAGGAA
TCATTTCTAGA--CTATCTGTAAAGTTGAGGGTAGAAAAGTATACTTTTCCCT---------------------------
--------------------------------------------------------------------------------
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--------------
>chr6B_738
--------------------------------------------------------------------------------
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-------------------------------------------AGGGAAAAGCATA-ATTTTCGTCGCTTAACTTTACCG
ATGGTCTAGAA-ATGGTTCCTCATCTAT-AAACCAAGAAAACCTAGTCCCTCAATTGTTAAAACCAGGTAGTTTTCATCC
CTCAAGAGGCTTCAAGGTGGTTTTGTGTTGACGTGGCATGGTTTTGTCCAGTGAGCTCGCCACGTCATCATTCACCTTAT
CTTCGTCTTCTTCC---TCTATCTTCTCTCACTC--GCCCAGGCCGGAGAAGAATCCGATGACACATGGTTACTGATGGA
TTATGGGTGGGCTTAGGTCCACACAAGACAATAATCCCTGGTTAATCTCTAAGGTCCAT---------------------
--------------------------------------------------------------------------------
--GCATGTGTATGGAAAATGGTGGAAAGTGTGGGAAGTTTATTTCCATACTACTACAGTAAGAA----------------
------------------------------------------------------------------------------GA
GTGAGACCACTTT---------ATAAGGGATGCTCCACCACTTGCTATTGG-----------------------------
---------------------------------------GAGCTAGCGGATCCCCTGTAAACAA--GTCGTGAAG-----
---AATCAACAAGGCTCGAGACGAACCTTTAG------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CAAACA-TAGTCACCTTTTTCTGTGCGTGCCTGTGTTGTGTTTCTAGCCCACTGGTTCG
TGTGTATGTGCTTGAGGGTTCGGCATTTCTGG-CCGGCGGCAAATCACTTTGCTTGGCTAGCTCCGCATAGGAGGATCTA
TCGAGTTGCGTATGGATGTATCATCAGCAGCGAAGGAAGAGGTGGACGAGCACGAAGGTGAGGCCAAGGCTGCCGGAGGC
AGCAGAGCAGGCATGCGGTGAGGTGCTTCCCTGTGAACAGG--------GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGACGAAGGTGAGGTGGACGACGATGTGGCGATGTCAATT-------ATCAAAACCATGCCGTGTCAGTACAAAACCA
CCTCAAGTCGTTTGAGGGACAAAAACTATCCGGTTTCAACAATTGAGGGACTAGATTTTTCTGGTC-TGTAGTTGAAGAA
TCATTTCTAGA--CTGTCGGTAAAGTTGAGGGTAGAAAAGTATACTTTTCCCT---------------------------
--------------------------------------------------------------------------------
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--------------
>chr5D_1052
--------------------------------------------------------------------------------
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----------------------------------------------TGCCTGCTGCTAGTCGTACACCGTTGTGACGGTG
CGCTCCACTCCGCGGTTGTCAAAGTAGTGCACGGTGGCCATGTGCCACTGCCCACGCCCTCG-----GACGCCAGCGCCG
GCGCATCCACAGGGAAACAGAGTCGCACATCACGAAGGGCGCCATGCACAAA-----------------GTTGCGGCACC
AGCAGTCTGAGCACGGCTGCACGGCTCGCCGGATTTGTCGCCGCTGCCATCGGCACGGCGCGGCGGGAGCGGGAGCGGGA
GCGAGAGAATATC---------ATCAGGGATCAGGCTTTGAACTAGAGCGGGAGTGAGCTAGGGGCCGAC-GGTGCAGCA
GCGGGAGCAT-TTGTCAGGCTCGGAACCAGCGCGGGAGTGAGCTAGGGGATCCCCTGTAAACAACAGTCGTGAAGAATCA
ACAAATCAGCAAAGTTCGAGGCGAACCTTTAGAACATCTCCAACGGCCGCACAAAAATATCACGCCCAATAAAAGTTATA
GCGCGCCATTTTAGCACTTTTAATGCGCCGGGACCAACATTGCTTTAGCAGACGCCCAAAGACGCGCGCACAAAAAGCAG
ACAGTGCAAATTGTGAAGCGCACGCAATCCGAAGCCTAAAATATGCTGCGCGCGGTAGCGTTTTTCAGCGCGCGCCCAAA
ACTTTTTAGCGCTACAACATCTCCTAAAGCTGTTGGGCGCTAAAAAAACGAATTTTTAGTGCGCGGAGGTCTTTTTTGGC
GCCTGTTGGAGATGCTCTTAGCAAACA-TAGCCAGCCTTTG-TGTGCGTGCCTACGTTGTGTTTCCATCCGACTGGTTTG
TACGTATGTGCGTGAGACTTGGGCGTTTCTGG-CGGGGGC--AATCAATTTGCTTGGCTGT----GCACGGGAGGATCGA
TCAAGTTGCGTATGGATGTATCATCAGCAGCGAAGGAAGAGGTGGACGAGTACGAAGGTGAGGCCGCGGCTGCCGGAGGC
AGCAGAGCAGACGTGCGGTGAGGTGCTTCCCTGTGCACAAG--------GAGAGGGGA--------------------AG
A-AGACGAAGGTGAGGTGGACGACGATGTGGCAAGGGCGGTG-------GTCAAAACCATGCCATGTCAGCACAAAACCA
CCTGAAGCCATTTGAGGGACGAAAATTATCCAGTTTCAACAATTGAGGGACTAGGTTTTTCTGGTTTTGTAGTTGAGGGA
TCATTTCTAGA--CTATTGGTAAAATTGAGGGAAGAAAAATATACTTCTCCCT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>SNPs
SSS---------S------------------------------S------------------------------------
--------------S-SSSSSS---------------------S--------------------S---------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
-S-S---------------------------------------S-SSS--S---S-S-SS--------------------
--------------------------------------S-----------------------------------------
--------------------------S----------------------------------------SS-----------
--------------------------S-----------S-----------------------------------------
-------------------------------------------------------------------------------S
S----SSS-------------S----------S-----------------------------------------------
-------S----------------------------------------------S-------------------------
---------------------------------------------------S-----------------S----------
---------------------------S---------------S------------------------------------
-----S-----------------------------S--------------------------------------------
-------------------------------------------------------------------S------------
-----------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
-S------------------------------------------------------------------------------
---------S--------------------------S-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
---S------------------------------------S---------------------------------------
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S---------------------------------------
-S-------------------------------------S----------------------------------------
-------------------S---------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS
>forward_519
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------TGTTTGTGAGGTCTGGAGGC-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>reverse_2465
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GCTCCTGAAAGCAGAG
CAGA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
