Multiple sequence alignment - TraesCS5B01G209700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G209700 chr5B 100.000 2603 0 0 1 2603 379448192 379450794 0.000000e+00 4807.0
1 TraesCS5B01G209700 chr5B 82.639 288 39 10 2047 2332 144599730 144600008 7.200000e-61 244.0
2 TraesCS5B01G209700 chr5B 91.463 164 13 1 2441 2603 26029655 26029818 9.370000e-55 224.0
3 TraesCS5B01G209700 chr5B 88.439 173 14 2 2437 2603 542814131 542813959 1.220000e-48 204.0
4 TraesCS5B01G209700 chr5B 91.228 57 5 0 1910 1966 703233009 703233065 7.720000e-11 78.7
5 TraesCS5B01G209700 chr5D 92.412 1476 51 15 271 1698 326744924 326746386 0.000000e+00 2049.0
6 TraesCS5B01G209700 chr5D 89.680 281 16 6 1 269 326742719 326742998 1.920000e-91 346.0
7 TraesCS5B01G209700 chr5D 90.964 166 14 1 2438 2603 515982563 515982727 3.370000e-54 222.0
8 TraesCS5B01G209700 chr5D 84.071 113 8 7 1912 2022 491944418 491944314 1.650000e-17 100.0
9 TraesCS5B01G209700 chr5D 88.060 67 4 4 2224 2286 495222426 495222492 2.780000e-10 76.8
10 TraesCS5B01G209700 chr5A 92.378 984 43 11 923 1890 429734589 429733622 0.000000e+00 1373.0
11 TraesCS5B01G209700 chr5A 90.928 948 52 15 1 935 429749293 429748367 0.000000e+00 1243.0
12 TraesCS5B01G209700 chr5A 83.193 119 13 4 1910 2028 638760446 638760335 4.580000e-18 102.0
13 TraesCS5B01G209700 chr2D 95.395 152 7 0 2452 2603 629213996 629214147 2.590000e-60 243.0
14 TraesCS5B01G209700 chr2D 92.308 104 6 2 2351 2453 148436974 148436872 2.090000e-31 147.0
15 TraesCS5B01G209700 chr2D 91.589 107 8 1 2347 2453 549875549 549875654 2.090000e-31 147.0
16 TraesCS5B01G209700 chr2D 78.261 230 34 10 1906 2128 3422255 3422035 1.630000e-27 134.0
17 TraesCS5B01G209700 chr2D 82.906 117 12 5 1913 2027 466792730 466792620 5.930000e-17 99.0
18 TraesCS5B01G209700 chr2B 95.395 152 7 0 2452 2603 16225279 16225430 2.590000e-60 243.0
19 TraesCS5B01G209700 chr2B 94.000 150 9 0 2452 2601 56519586 56519437 7.250000e-56 228.0
20 TraesCS5B01G209700 chr2B 93.464 153 10 0 2451 2603 414554577 414554729 7.250000e-56 228.0
21 TraesCS5B01G209700 chr2B 90.798 163 13 2 2441 2603 783701818 783701978 1.570000e-52 217.0
22 TraesCS5B01G209700 chr2B 90.265 113 7 3 2342 2453 646700293 646700402 7.510000e-31 145.0
23 TraesCS5B01G209700 chr3A 94.805 154 8 0 2450 2603 535225743 535225590 9.310000e-60 241.0
24 TraesCS5B01G209700 chr3A 97.778 45 1 0 1922 1966 442749276 442749232 7.720000e-11 78.7
25 TraesCS5B01G209700 chr3B 93.631 157 10 0 2445 2601 514126930 514126774 4.330000e-58 235.0
26 TraesCS5B01G209700 chr3B 89.634 164 15 2 2440 2603 523158389 523158228 9.440000e-50 207.0
27 TraesCS5B01G209700 chr3B 90.132 152 15 0 2452 2603 434647005 434646854 5.680000e-47 198.0
28 TraesCS5B01G209700 chr3B 94.118 102 5 1 2352 2453 21321237 21321137 1.250000e-33 154.0
29 TraesCS5B01G209700 chr6B 90.303 165 15 1 2437 2601 426485737 426485900 5.640000e-52 215.0
30 TraesCS5B01G209700 chr6B 94.118 102 4 2 2353 2453 536008859 536008959 1.250000e-33 154.0
31 TraesCS5B01G209700 chr1A 89.634 164 17 0 2440 2603 574348535 574348698 2.620000e-50 209.0
32 TraesCS5B01G209700 chr7D 93.333 105 4 2 2350 2453 428747051 428747153 4.490000e-33 152.0
33 TraesCS5B01G209700 chrUn 92.381 105 7 1 2349 2453 52806607 52806710 5.800000e-32 148.0
34 TraesCS5B01G209700 chrUn 97.778 45 1 0 1922 1966 208770665 208770621 7.720000e-11 78.7
35 TraesCS5B01G209700 chr7A 91.667 108 8 1 2346 2453 710147401 710147507 5.800000e-32 148.0
36 TraesCS5B01G209700 chr4B 74.528 424 62 26 1915 2305 165037538 165037128 2.700000e-30 143.0
37 TraesCS5B01G209700 chr1D 87.805 123 12 3 2333 2453 424907205 424907326 9.710000e-30 141.0
38 TraesCS5B01G209700 chr3D 89.552 67 2 5 1903 1967 26306633 26306696 2.150000e-11 80.5
39 TraesCS5B01G209700 chr7B 97.778 45 1 0 1922 1966 525625013 525624969 7.720000e-11 78.7
40 TraesCS5B01G209700 chr7B 97.778 45 1 0 1922 1966 741951477 741951433 7.720000e-11 78.7
41 TraesCS5B01G209700 chr4A 95.238 42 2 0 2245 2286 601306337 601306378 1.670000e-07 67.6
42 TraesCS5B01G209700 chr2A 95.238 42 2 0 2245 2286 440915207 440915248 1.670000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G209700 chr5B 379448192 379450794 2602 False 4807.0 4807 100.000 1 2603 1 chr5B.!!$F3 2602
1 TraesCS5B01G209700 chr5D 326742719 326746386 3667 False 1197.5 2049 91.046 1 1698 2 chr5D.!!$F3 1697
2 TraesCS5B01G209700 chr5A 429733622 429734589 967 True 1373.0 1373 92.378 923 1890 1 chr5A.!!$R1 967
3 TraesCS5B01G209700 chr5A 429748367 429749293 926 True 1243.0 1243 90.928 1 935 1 chr5A.!!$R2 934

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 2400 1.192428 GACGGAGGAGGGTATGTGTT 58.808 55.0 0.0 0.0 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2183 4188 0.033228 GATGAGATCTCAGGGGCACG 59.967 60.0 28.26 0.0 43.61 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
235 247 8.786826 AATAAACGTCCACAAGAGATATCAAA 57.213 30.769 5.32 0.00 0.00 2.69
255 268 5.695816 TCAAATGCACAAATAAGAACTTGGC 59.304 36.000 0.00 0.00 0.00 4.52
258 271 3.505680 TGCACAAATAAGAACTTGGCGAT 59.494 39.130 0.00 0.00 0.00 4.58
305 2243 4.462483 TGGGAAATTTCTGGCACATAAGAC 59.538 41.667 17.42 0.00 38.20 3.01
311 2249 2.821546 TCTGGCACATAAGACGTATGC 58.178 47.619 8.14 0.00 43.10 3.14
348 2286 5.569355 AGTGGATGAACATCACCAACAATA 58.431 37.500 15.22 0.00 39.54 1.90
417 2355 1.578618 GAACGATGCGAGCTTTGCG 60.579 57.895 7.30 0.00 34.24 4.85
459 2400 1.192428 GACGGAGGAGGGTATGTGTT 58.808 55.000 0.00 0.00 0.00 3.32
514 2455 3.300765 GTGTCGTCTCCCCACGGT 61.301 66.667 0.00 0.00 40.35 4.83
630 2571 3.725267 ACCGATCCCCAATTAATTAGGGT 59.275 43.478 25.37 14.76 39.40 4.34
653 2594 1.701847 AGCAAGGCAAGAAGAAGGAGA 59.298 47.619 0.00 0.00 0.00 3.71
660 2601 2.028203 GCAAGAAGAAGGAGAGTGCTCT 60.028 50.000 0.73 0.73 43.78 4.09
711 2652 4.910585 GCGGATGGTAGTGGGCCG 62.911 72.222 0.00 0.00 44.47 6.13
752 2696 1.228337 TTCACCTCGACCGTCTCCA 60.228 57.895 0.00 0.00 0.00 3.86
833 2804 3.055458 GGTTTTTCCCCTCTCTCTCTCTG 60.055 52.174 0.00 0.00 0.00 3.35
837 2808 1.843851 TCCCCTCTCTCTCTCTGTCTC 59.156 57.143 0.00 0.00 0.00 3.36
894 2865 4.338379 CCCAAACAGGCTATCTACCTAC 57.662 50.000 0.00 0.00 35.10 3.18
896 2867 4.202264 CCCAAACAGGCTATCTACCTACAG 60.202 50.000 0.00 0.00 35.10 2.74
897 2868 4.406003 CCAAACAGGCTATCTACCTACAGT 59.594 45.833 0.00 0.00 35.10 3.55
898 2869 5.104900 CCAAACAGGCTATCTACCTACAGTT 60.105 44.000 0.00 0.00 35.10 3.16
899 2870 5.855740 AACAGGCTATCTACCTACAGTTC 57.144 43.478 0.00 0.00 35.10 3.01
900 2871 3.884091 ACAGGCTATCTACCTACAGTTCG 59.116 47.826 0.00 0.00 35.10 3.95
921 2895 2.004583 CACGTTATCTTTCGAGCCCA 57.995 50.000 0.00 0.00 0.00 5.36
1178 3167 4.416601 CCCCTTCCTCCTCCCCGT 62.417 72.222 0.00 0.00 0.00 5.28
1296 3292 1.444553 CTCGTCTCAAGACACGGCC 60.445 63.158 10.56 0.00 44.99 6.13
1328 3324 2.286872 TCAGTAATCTCGACCCGACTC 58.713 52.381 0.00 0.00 0.00 3.36
1394 3390 2.671619 CGTGGTTGACGGGGCAAT 60.672 61.111 0.00 0.00 44.85 3.56
1410 3406 1.089920 CAATCAAAGAGGTGGAGGCG 58.910 55.000 0.00 0.00 0.00 5.52
1667 3663 5.650266 TGAAGAATAAAATGTGGCGTGGTAT 59.350 36.000 0.00 0.00 0.00 2.73
1671 3667 6.706270 AGAATAAAATGTGGCGTGGTATCTAG 59.294 38.462 0.00 0.00 0.00 2.43
1672 3668 3.906720 AAATGTGGCGTGGTATCTAGT 57.093 42.857 0.00 0.00 0.00 2.57
1673 3669 5.347620 AAAATGTGGCGTGGTATCTAGTA 57.652 39.130 0.00 0.00 0.00 1.82
1683 3679 5.247084 CGTGGTATCTAGTAGTAGCATCCT 58.753 45.833 11.95 0.00 31.83 3.24
1709 3705 9.594478 TGTGCATACCTATATTTATCCATTACG 57.406 33.333 0.00 0.00 0.00 3.18
1725 3724 5.751509 TCCATTACGTTCATACCGATTTCTG 59.248 40.000 0.00 0.00 0.00 3.02
1767 3770 1.803555 GGAGAAGTTGCTGCTTGAGTC 59.196 52.381 0.00 0.00 0.00 3.36
1811 3816 4.637534 ACGCATTGAGAATTGTAAGATGCT 59.362 37.500 12.39 0.00 37.01 3.79
1816 3821 6.732531 TTGAGAATTGTAAGATGCTGTCAG 57.267 37.500 0.00 0.00 0.00 3.51
1841 3846 8.454106 AGCTGTTTCTATAGCATGTTTTTAGTG 58.546 33.333 0.00 0.00 40.64 2.74
1842 3847 8.450964 GCTGTTTCTATAGCATGTTTTTAGTGA 58.549 33.333 0.00 0.00 38.30 3.41
1850 3855 6.017400 AGCATGTTTTTAGTGAGAATGTGG 57.983 37.500 0.00 0.00 0.00 4.17
1858 3863 8.496751 GTTTTTAGTGAGAATGTGGTAAGACTC 58.503 37.037 0.00 0.00 0.00 3.36
1859 3864 6.911250 TTAGTGAGAATGTGGTAAGACTCA 57.089 37.500 0.00 0.00 33.06 3.41
1861 3866 4.246458 GTGAGAATGTGGTAAGACTCACC 58.754 47.826 0.00 0.00 44.41 4.02
1876 3881 0.391927 TCACCAAACGATAAGGGCCG 60.392 55.000 0.00 0.00 0.00 6.13
1882 3887 0.459063 AACGATAAGGGCCGAACGTC 60.459 55.000 15.01 3.05 33.59 4.34
1885 3890 0.529992 GATAAGGGCCGAACGTCAGG 60.530 60.000 0.00 5.02 0.00 3.86
1886 3891 0.974010 ATAAGGGCCGAACGTCAGGA 60.974 55.000 12.76 0.00 0.00 3.86
1887 3892 1.601419 TAAGGGCCGAACGTCAGGAG 61.601 60.000 12.76 0.00 0.00 3.69
1889 3894 4.373116 GGCCGAACGTCAGGAGCA 62.373 66.667 12.76 0.00 0.00 4.26
1890 3895 2.811317 GCCGAACGTCAGGAGCAG 60.811 66.667 12.76 0.00 0.00 4.24
1891 3896 2.811317 CCGAACGTCAGGAGCAGC 60.811 66.667 3.39 0.00 0.00 5.25
1892 3897 2.811317 CGAACGTCAGGAGCAGCC 60.811 66.667 0.00 0.00 0.00 4.85
1893 3898 2.811317 GAACGTCAGGAGCAGCCG 60.811 66.667 0.00 0.00 43.43 5.52
1911 3916 4.548513 CTCGCTAGGCCCCCTCCT 62.549 72.222 0.00 0.00 40.21 3.69
1912 3917 4.541648 TCGCTAGGCCCCCTCCTC 62.542 72.222 0.00 0.00 37.66 3.71
1915 3920 4.583442 CTAGGCCCCCTCCTCCCC 62.583 77.778 0.00 0.00 37.66 4.81
1979 3984 2.359975 CAGGAACGGGAAGGTGGC 60.360 66.667 0.00 0.00 0.00 5.01
1980 3985 4.016706 AGGAACGGGAAGGTGGCG 62.017 66.667 0.00 0.00 0.00 5.69
1998 4003 4.365505 GCGGGGCGGATCTAGCTC 62.366 72.222 12.11 8.88 34.52 4.09
2001 4006 3.372123 GGGCGGATCTAGCTCCTC 58.628 66.667 10.79 2.56 32.77 3.71
2002 4007 2.631580 GGGCGGATCTAGCTCCTCG 61.632 68.421 10.79 0.00 32.77 4.63
2003 4008 2.257067 GCGGATCTAGCTCCTCGC 59.743 66.667 10.79 6.30 39.57 5.03
2004 4009 2.958576 CGGATCTAGCTCCTCGCC 59.041 66.667 10.79 0.00 40.39 5.54
2005 4010 2.631580 CGGATCTAGCTCCTCGCCC 61.632 68.421 10.79 0.00 40.39 6.13
2006 4011 2.279810 GGATCTAGCTCCTCGCCCC 61.280 68.421 5.32 0.00 40.39 5.80
2007 4012 1.228737 GATCTAGCTCCTCGCCCCT 60.229 63.158 0.00 0.00 40.39 4.79
2008 4013 1.228737 ATCTAGCTCCTCGCCCCTC 60.229 63.158 0.00 0.00 40.39 4.30
2009 4014 2.723464 ATCTAGCTCCTCGCCCCTCC 62.723 65.000 0.00 0.00 40.39 4.30
2010 4015 3.430497 TAGCTCCTCGCCCCTCCT 61.430 66.667 0.00 0.00 40.39 3.69
2011 4016 3.438615 TAGCTCCTCGCCCCTCCTC 62.439 68.421 0.00 0.00 40.39 3.71
2020 4025 4.024984 CCCCTCCTCCCACCCTCA 62.025 72.222 0.00 0.00 0.00 3.86
2021 4026 2.689034 CCCTCCTCCCACCCTCAC 60.689 72.222 0.00 0.00 0.00 3.51
2022 4027 2.122729 CCTCCTCCCACCCTCACA 59.877 66.667 0.00 0.00 0.00 3.58
2023 4028 2.294078 CCTCCTCCCACCCTCACAC 61.294 68.421 0.00 0.00 0.00 3.82
2024 4029 2.203938 TCCTCCCACCCTCACACC 60.204 66.667 0.00 0.00 0.00 4.16
2025 4030 3.330720 CCTCCCACCCTCACACCC 61.331 72.222 0.00 0.00 0.00 4.61
2026 4031 3.330720 CTCCCACCCTCACACCCC 61.331 72.222 0.00 0.00 0.00 4.95
2033 4038 4.394712 CCTCACACCCCGTGCCTC 62.395 72.222 0.00 0.00 45.92 4.70
2034 4039 3.625897 CTCACACCCCGTGCCTCA 61.626 66.667 0.00 0.00 45.92 3.86
2035 4040 3.883744 CTCACACCCCGTGCCTCAC 62.884 68.421 0.00 0.00 45.92 3.51
2042 4047 4.802051 CCGTGCCTCACCCCCATG 62.802 72.222 0.00 0.00 0.00 3.66
2043 4048 4.802051 CGTGCCTCACCCCCATGG 62.802 72.222 4.14 4.14 41.37 3.66
2046 4051 4.828296 GCCTCACCCCCATGGCAG 62.828 72.222 6.09 1.37 44.34 4.85
2047 4052 4.828296 CCTCACCCCCATGGCAGC 62.828 72.222 6.09 0.00 37.83 5.25
2048 4053 3.736224 CTCACCCCCATGGCAGCT 61.736 66.667 6.09 0.00 37.83 4.24
2049 4054 4.051167 TCACCCCCATGGCAGCTG 62.051 66.667 10.11 10.11 37.83 4.24
2083 4088 4.570663 CGATGTCGGCTCCGGTCC 62.571 72.222 8.59 3.06 40.25 4.46
2084 4089 3.148279 GATGTCGGCTCCGGTCCT 61.148 66.667 8.59 0.00 40.25 3.85
2085 4090 3.140225 GATGTCGGCTCCGGTCCTC 62.140 68.421 8.59 1.49 40.25 3.71
2096 4101 4.554036 GGTCCTCCGATGGCCTGC 62.554 72.222 3.32 0.00 0.00 4.85
2097 4102 4.554036 GTCCTCCGATGGCCTGCC 62.554 72.222 3.32 0.00 0.00 4.85
2118 4123 4.335647 CGCACCTCCAGCCAACCT 62.336 66.667 0.00 0.00 0.00 3.50
2119 4124 2.360475 GCACCTCCAGCCAACCTC 60.360 66.667 0.00 0.00 0.00 3.85
2120 4125 2.046892 CACCTCCAGCCAACCTCG 60.047 66.667 0.00 0.00 0.00 4.63
2121 4126 4.021925 ACCTCCAGCCAACCTCGC 62.022 66.667 0.00 0.00 0.00 5.03
2122 4127 4.785453 CCTCCAGCCAACCTCGCC 62.785 72.222 0.00 0.00 0.00 5.54
2123 4128 4.785453 CTCCAGCCAACCTCGCCC 62.785 72.222 0.00 0.00 0.00 6.13
2128 4133 3.712907 GCCAACCTCGCCCCACTA 61.713 66.667 0.00 0.00 0.00 2.74
2129 4134 3.043999 GCCAACCTCGCCCCACTAT 62.044 63.158 0.00 0.00 0.00 2.12
2130 4135 1.146263 CCAACCTCGCCCCACTATC 59.854 63.158 0.00 0.00 0.00 2.08
2131 4136 1.227263 CAACCTCGCCCCACTATCG 60.227 63.158 0.00 0.00 0.00 2.92
2132 4137 1.684734 AACCTCGCCCCACTATCGT 60.685 57.895 0.00 0.00 0.00 3.73
2133 4138 1.262640 AACCTCGCCCCACTATCGTT 61.263 55.000 0.00 0.00 0.00 3.85
2134 4139 1.227263 CCTCGCCCCACTATCGTTG 60.227 63.158 0.00 0.00 0.00 4.10
2135 4140 1.227263 CTCGCCCCACTATCGTTGG 60.227 63.158 0.00 0.00 0.00 3.77
2136 4141 1.956629 CTCGCCCCACTATCGTTGGT 61.957 60.000 0.00 0.00 0.00 3.67
2137 4142 1.520787 CGCCCCACTATCGTTGGTC 60.521 63.158 0.00 0.00 0.00 4.02
2138 4143 1.520787 GCCCCACTATCGTTGGTCG 60.521 63.158 0.00 0.00 41.41 4.79
2139 4144 1.895238 CCCCACTATCGTTGGTCGT 59.105 57.895 0.00 0.00 40.80 4.34
2140 4145 0.179119 CCCCACTATCGTTGGTCGTC 60.179 60.000 0.00 0.00 40.80 4.20
2141 4146 0.179119 CCCACTATCGTTGGTCGTCC 60.179 60.000 0.00 0.00 40.80 4.79
2142 4147 0.179119 CCACTATCGTTGGTCGTCCC 60.179 60.000 0.00 0.00 40.80 4.46
2143 4148 0.179119 CACTATCGTTGGTCGTCCCC 60.179 60.000 0.00 0.00 40.80 4.81
2144 4149 0.612732 ACTATCGTTGGTCGTCCCCA 60.613 55.000 0.00 0.00 40.80 4.96
2145 4150 0.533491 CTATCGTTGGTCGTCCCCAA 59.467 55.000 0.00 0.00 42.16 4.12
2149 4154 4.889807 TTGGTCGTCCCCAACTTG 57.110 55.556 0.00 0.00 39.56 3.16
2150 4155 1.527380 TTGGTCGTCCCCAACTTGC 60.527 57.895 0.00 0.00 39.56 4.01
2151 4156 2.671963 GGTCGTCCCCAACTTGCC 60.672 66.667 0.00 0.00 0.00 4.52
2152 4157 2.671963 GTCGTCCCCAACTTGCCC 60.672 66.667 0.00 0.00 0.00 5.36
2153 4158 4.323477 TCGTCCCCAACTTGCCCG 62.323 66.667 0.00 0.00 0.00 6.13
2154 4159 4.636435 CGTCCCCAACTTGCCCGT 62.636 66.667 0.00 0.00 0.00 5.28
2155 4160 2.751688 GTCCCCAACTTGCCCGTA 59.248 61.111 0.00 0.00 0.00 4.02
2156 4161 1.073548 GTCCCCAACTTGCCCGTAA 59.926 57.895 0.00 0.00 0.00 3.18
2157 4162 0.958876 GTCCCCAACTTGCCCGTAAG 60.959 60.000 0.00 0.00 0.00 2.34
2158 4163 2.340328 CCCCAACTTGCCCGTAAGC 61.340 63.158 0.00 0.00 0.00 3.09
2159 4164 2.340328 CCCAACTTGCCCGTAAGCC 61.340 63.158 0.00 0.00 0.00 4.35
2160 4165 1.303317 CCAACTTGCCCGTAAGCCT 60.303 57.895 0.00 0.00 0.00 4.58
2161 4166 1.305930 CCAACTTGCCCGTAAGCCTC 61.306 60.000 0.00 0.00 0.00 4.70
2162 4167 1.375523 AACTTGCCCGTAAGCCTCG 60.376 57.895 0.00 0.00 0.00 4.63
2163 4168 3.195698 CTTGCCCGTAAGCCTCGC 61.196 66.667 0.00 0.00 0.00 5.03
2164 4169 4.770874 TTGCCCGTAAGCCTCGCC 62.771 66.667 0.00 0.00 0.00 5.54
2167 4172 4.222847 CCCGTAAGCCTCGCCCTC 62.223 72.222 0.00 0.00 0.00 4.30
2168 4173 3.148279 CCGTAAGCCTCGCCCTCT 61.148 66.667 0.00 0.00 0.00 3.69
2169 4174 2.413765 CGTAAGCCTCGCCCTCTC 59.586 66.667 0.00 0.00 0.00 3.20
2170 4175 2.816012 GTAAGCCTCGCCCTCTCC 59.184 66.667 0.00 0.00 0.00 3.71
2171 4176 2.833582 TAAGCCTCGCCCTCTCCG 60.834 66.667 0.00 0.00 0.00 4.63
2196 4201 4.414956 TCCCCGTGCCCCTGAGAT 62.415 66.667 0.00 0.00 0.00 2.75
2197 4202 3.866582 CCCCGTGCCCCTGAGATC 61.867 72.222 0.00 0.00 0.00 2.75
2198 4203 2.765807 CCCGTGCCCCTGAGATCT 60.766 66.667 0.00 0.00 0.00 2.75
2199 4204 2.801631 CCCGTGCCCCTGAGATCTC 61.802 68.421 16.21 16.21 0.00 2.75
2200 4205 2.060383 CCGTGCCCCTGAGATCTCA 61.060 63.158 23.75 23.75 38.06 3.27
2201 4206 1.406065 CCGTGCCCCTGAGATCTCAT 61.406 60.000 25.30 0.00 39.13 2.90
2202 4207 0.033228 CGTGCCCCTGAGATCTCATC 59.967 60.000 25.30 14.69 39.13 2.92
2203 4208 1.422531 GTGCCCCTGAGATCTCATCT 58.577 55.000 25.30 0.00 43.70 2.90
2204 4209 1.070445 GTGCCCCTGAGATCTCATCTG 59.930 57.143 25.30 16.40 40.38 2.90
2205 4210 0.686224 GCCCCTGAGATCTCATCTGG 59.314 60.000 25.30 23.36 40.38 3.86
2206 4211 2.039070 GCCCCTGAGATCTCATCTGGT 61.039 57.143 25.30 0.00 40.38 4.00
2207 4212 1.693062 CCCCTGAGATCTCATCTGGTG 59.307 57.143 25.30 11.26 40.38 4.17
2208 4213 1.070445 CCCTGAGATCTCATCTGGTGC 59.930 57.143 25.30 0.00 40.38 5.01
2209 4214 1.070445 CCTGAGATCTCATCTGGTGCC 59.930 57.143 25.30 0.00 40.38 5.01
2210 4215 2.040939 CTGAGATCTCATCTGGTGCCT 58.959 52.381 25.30 0.00 40.38 4.75
2211 4216 2.036217 CTGAGATCTCATCTGGTGCCTC 59.964 54.545 25.30 0.00 40.38 4.70
2212 4217 2.318908 GAGATCTCATCTGGTGCCTCT 58.681 52.381 18.11 0.00 40.38 3.69
2213 4218 2.297033 GAGATCTCATCTGGTGCCTCTC 59.703 54.545 18.11 0.00 40.38 3.20
2214 4219 1.000385 GATCTCATCTGGTGCCTCTCG 60.000 57.143 0.00 0.00 0.00 4.04
2215 4220 0.034089 TCTCATCTGGTGCCTCTCGA 60.034 55.000 0.00 0.00 0.00 4.04
2216 4221 1.039068 CTCATCTGGTGCCTCTCGAT 58.961 55.000 0.00 0.00 0.00 3.59
2217 4222 0.749049 TCATCTGGTGCCTCTCGATG 59.251 55.000 0.00 0.00 34.33 3.84
2218 4223 0.463204 CATCTGGTGCCTCTCGATGT 59.537 55.000 0.00 0.00 0.00 3.06
2219 4224 0.749649 ATCTGGTGCCTCTCGATGTC 59.250 55.000 0.00 0.00 0.00 3.06
2220 4225 1.142748 CTGGTGCCTCTCGATGTCC 59.857 63.158 0.00 0.00 0.00 4.02
2221 4226 1.305297 TGGTGCCTCTCGATGTCCT 60.305 57.895 0.00 0.00 0.00 3.85
2222 4227 0.904865 TGGTGCCTCTCGATGTCCTT 60.905 55.000 0.00 0.00 0.00 3.36
2223 4228 0.179097 GGTGCCTCTCGATGTCCTTC 60.179 60.000 0.00 0.00 0.00 3.46
2224 4229 0.820871 GTGCCTCTCGATGTCCTTCT 59.179 55.000 0.00 0.00 0.00 2.85
2225 4230 1.107114 TGCCTCTCGATGTCCTTCTC 58.893 55.000 0.00 0.00 0.00 2.87
2226 4231 0.387565 GCCTCTCGATGTCCTTCTCC 59.612 60.000 0.00 0.00 0.00 3.71
2227 4232 0.665835 CCTCTCGATGTCCTTCTCCG 59.334 60.000 0.00 0.00 0.00 4.63
2228 4233 0.665835 CTCTCGATGTCCTTCTCCGG 59.334 60.000 0.00 0.00 0.00 5.14
2229 4234 1.066587 CTCGATGTCCTTCTCCGGC 59.933 63.158 0.00 0.00 0.00 6.13
2230 4235 1.379977 TCGATGTCCTTCTCCGGCT 60.380 57.895 0.00 0.00 0.00 5.52
2231 4236 1.227089 CGATGTCCTTCTCCGGCTG 60.227 63.158 0.00 0.00 0.00 4.85
2232 4237 1.522580 GATGTCCTTCTCCGGCTGC 60.523 63.158 0.00 0.00 0.00 5.25
2233 4238 1.965754 GATGTCCTTCTCCGGCTGCT 61.966 60.000 0.00 0.00 0.00 4.24
2234 4239 2.125350 GTCCTTCTCCGGCTGCTG 60.125 66.667 0.00 0.26 0.00 4.41
2235 4240 4.087892 TCCTTCTCCGGCTGCTGC 62.088 66.667 7.10 7.10 38.76 5.25
2236 4241 4.399395 CCTTCTCCGGCTGCTGCA 62.399 66.667 17.89 0.88 41.91 4.41
2237 4242 3.123620 CTTCTCCGGCTGCTGCAC 61.124 66.667 17.89 6.00 41.91 4.57
2244 4249 3.730761 GGCTGCTGCACGGACTTG 61.731 66.667 17.89 0.00 41.91 3.16
2245 4250 4.395583 GCTGCTGCACGGACTTGC 62.396 66.667 11.11 0.00 43.31 4.01
2246 4251 3.730761 CTGCTGCACGGACTTGCC 61.731 66.667 0.00 0.00 42.25 4.52
2339 4344 4.280019 GACCCAGCCCCGTTGGTT 62.280 66.667 0.00 0.00 31.87 3.67
2340 4345 4.280019 ACCCAGCCCCGTTGGTTC 62.280 66.667 0.00 0.00 31.87 3.62
2341 4346 3.966543 CCCAGCCCCGTTGGTTCT 61.967 66.667 0.00 0.00 31.87 3.01
2342 4347 2.672996 CCAGCCCCGTTGGTTCTG 60.673 66.667 0.00 0.00 36.04 3.02
2343 4348 3.365265 CAGCCCCGTTGGTTCTGC 61.365 66.667 0.00 0.00 36.04 4.26
2344 4349 3.570212 AGCCCCGTTGGTTCTGCT 61.570 61.111 0.00 0.00 36.04 4.24
2345 4350 3.365265 GCCCCGTTGGTTCTGCTG 61.365 66.667 0.00 0.00 36.04 4.41
2346 4351 3.365265 CCCCGTTGGTTCTGCTGC 61.365 66.667 0.00 0.00 0.00 5.25
2347 4352 2.281761 CCCGTTGGTTCTGCTGCT 60.282 61.111 0.00 0.00 0.00 4.24
2348 4353 2.620112 CCCGTTGGTTCTGCTGCTG 61.620 63.158 0.00 0.00 0.00 4.41
2349 4354 2.620112 CCGTTGGTTCTGCTGCTGG 61.620 63.158 6.69 0.00 0.00 4.85
2350 4355 2.647297 GTTGGTTCTGCTGCTGGC 59.353 61.111 6.69 0.81 42.22 4.85
2351 4356 2.598394 TTGGTTCTGCTGCTGGCC 60.598 61.111 6.69 0.00 40.92 5.36
2354 4359 2.980233 GTTCTGCTGCTGGCCGTT 60.980 61.111 6.69 0.00 40.92 4.44
2355 4360 2.979676 TTCTGCTGCTGGCCGTTG 60.980 61.111 6.69 0.00 40.92 4.10
2356 4361 3.772853 TTCTGCTGCTGGCCGTTGT 62.773 57.895 6.69 0.00 40.92 3.32
2357 4362 3.289834 CTGCTGCTGGCCGTTGTT 61.290 61.111 0.00 0.00 40.92 2.83
2358 4363 1.965930 CTGCTGCTGGCCGTTGTTA 60.966 57.895 0.00 0.00 40.92 2.41
2359 4364 2.187599 CTGCTGCTGGCCGTTGTTAC 62.188 60.000 0.00 0.00 40.92 2.50
2360 4365 1.966451 GCTGCTGGCCGTTGTTACT 60.966 57.895 0.00 0.00 34.27 2.24
2361 4366 1.515521 GCTGCTGGCCGTTGTTACTT 61.516 55.000 0.00 0.00 34.27 2.24
2362 4367 0.517316 CTGCTGGCCGTTGTTACTTC 59.483 55.000 0.00 0.00 0.00 3.01
2363 4368 0.107831 TGCTGGCCGTTGTTACTTCT 59.892 50.000 0.00 0.00 0.00 2.85
2364 4369 1.235724 GCTGGCCGTTGTTACTTCTT 58.764 50.000 0.00 0.00 0.00 2.52
2365 4370 1.069227 GCTGGCCGTTGTTACTTCTTG 60.069 52.381 0.00 0.00 0.00 3.02
2366 4371 2.489971 CTGGCCGTTGTTACTTCTTGA 58.510 47.619 0.00 0.00 0.00 3.02
2367 4372 2.480419 CTGGCCGTTGTTACTTCTTGAG 59.520 50.000 0.00 0.00 0.00 3.02
2368 4373 1.197036 GGCCGTTGTTACTTCTTGAGC 59.803 52.381 0.00 0.00 0.00 4.26
2369 4374 2.143925 GCCGTTGTTACTTCTTGAGCT 58.856 47.619 0.00 0.00 0.00 4.09
2370 4375 2.548480 GCCGTTGTTACTTCTTGAGCTT 59.452 45.455 0.00 0.00 0.00 3.74
2371 4376 3.607078 GCCGTTGTTACTTCTTGAGCTTG 60.607 47.826 0.00 0.00 0.00 4.01
2372 4377 3.545633 CGTTGTTACTTCTTGAGCTTGC 58.454 45.455 0.00 0.00 0.00 4.01
2373 4378 3.545633 GTTGTTACTTCTTGAGCTTGCG 58.454 45.455 0.00 0.00 0.00 4.85
2374 4379 2.833794 TGTTACTTCTTGAGCTTGCGT 58.166 42.857 0.00 0.00 0.00 5.24
2375 4380 3.202906 TGTTACTTCTTGAGCTTGCGTT 58.797 40.909 0.00 0.00 0.00 4.84
2376 4381 3.002246 TGTTACTTCTTGAGCTTGCGTTG 59.998 43.478 0.00 0.00 0.00 4.10
2377 4382 1.953559 ACTTCTTGAGCTTGCGTTGA 58.046 45.000 0.00 0.00 0.00 3.18
2378 4383 2.498167 ACTTCTTGAGCTTGCGTTGAT 58.502 42.857 0.00 0.00 0.00 2.57
2379 4384 2.880890 ACTTCTTGAGCTTGCGTTGATT 59.119 40.909 0.00 0.00 0.00 2.57
2380 4385 3.316308 ACTTCTTGAGCTTGCGTTGATTT 59.684 39.130 0.00 0.00 0.00 2.17
2381 4386 3.988379 TCTTGAGCTTGCGTTGATTTT 57.012 38.095 0.00 0.00 0.00 1.82
2382 4387 4.305989 TCTTGAGCTTGCGTTGATTTTT 57.694 36.364 0.00 0.00 0.00 1.94
2404 4409 7.416964 TTTTTCCTTGAAGAGAAAATGGTGA 57.583 32.000 16.60 5.09 40.58 4.02
2405 4410 7.601705 TTTTCCTTGAAGAGAAAATGGTGAT 57.398 32.000 13.73 0.00 37.13 3.06
2406 4411 6.579666 TTCCTTGAAGAGAAAATGGTGATG 57.420 37.500 0.00 0.00 0.00 3.07
2407 4412 5.634118 TCCTTGAAGAGAAAATGGTGATGT 58.366 37.500 0.00 0.00 0.00 3.06
2408 4413 6.778821 TCCTTGAAGAGAAAATGGTGATGTA 58.221 36.000 0.00 0.00 0.00 2.29
2409 4414 6.881065 TCCTTGAAGAGAAAATGGTGATGTAG 59.119 38.462 0.00 0.00 0.00 2.74
2410 4415 6.404074 CCTTGAAGAGAAAATGGTGATGTAGC 60.404 42.308 0.00 0.00 0.00 3.58
2411 4416 5.559770 TGAAGAGAAAATGGTGATGTAGCA 58.440 37.500 0.00 0.00 41.72 3.49
2412 4417 6.003326 TGAAGAGAAAATGGTGATGTAGCAA 58.997 36.000 0.00 0.00 40.70 3.91
2413 4418 6.489700 TGAAGAGAAAATGGTGATGTAGCAAA 59.510 34.615 0.00 0.00 40.70 3.68
2414 4419 6.506500 AGAGAAAATGGTGATGTAGCAAAG 57.493 37.500 0.00 0.00 40.70 2.77
2415 4420 6.006449 AGAGAAAATGGTGATGTAGCAAAGT 58.994 36.000 0.00 0.00 40.70 2.66
2416 4421 7.168219 AGAGAAAATGGTGATGTAGCAAAGTA 58.832 34.615 0.00 0.00 40.70 2.24
2417 4422 7.335422 AGAGAAAATGGTGATGTAGCAAAGTAG 59.665 37.037 0.00 0.00 40.70 2.57
2418 4423 7.168219 AGAAAATGGTGATGTAGCAAAGTAGA 58.832 34.615 0.00 0.00 40.70 2.59
2419 4424 6.992063 AAATGGTGATGTAGCAAAGTAGAG 57.008 37.500 0.00 0.00 40.70 2.43
2420 4425 5.939764 ATGGTGATGTAGCAAAGTAGAGA 57.060 39.130 0.00 0.00 40.70 3.10
2421 4426 5.939764 TGGTGATGTAGCAAAGTAGAGAT 57.060 39.130 0.00 0.00 33.01 2.75
2422 4427 7.603180 ATGGTGATGTAGCAAAGTAGAGATA 57.397 36.000 0.00 0.00 40.70 1.98
2423 4428 7.418337 TGGTGATGTAGCAAAGTAGAGATAA 57.582 36.000 0.00 0.00 33.01 1.75
2424 4429 7.847096 TGGTGATGTAGCAAAGTAGAGATAAA 58.153 34.615 0.00 0.00 33.01 1.40
2425 4430 8.486210 TGGTGATGTAGCAAAGTAGAGATAAAT 58.514 33.333 0.00 0.00 33.01 1.40
2426 4431 9.982651 GGTGATGTAGCAAAGTAGAGATAAATA 57.017 33.333 0.00 0.00 0.00 1.40
2434 4439 9.785982 AGCAAAGTAGAGATAAATATTTCCCTC 57.214 33.333 16.17 16.17 0.00 4.30
2435 4440 9.561069 GCAAAGTAGAGATAAATATTTCCCTCA 57.439 33.333 21.74 11.57 0.00 3.86
2456 4461 6.830873 TCAGTTAGAGAACCAAGGTACTAC 57.169 41.667 0.00 0.00 34.47 2.73
2457 4462 5.713861 TCAGTTAGAGAACCAAGGTACTACC 59.286 44.000 0.00 0.00 34.47 3.18
2458 4463 5.715753 CAGTTAGAGAACCAAGGTACTACCT 59.284 44.000 1.40 1.40 43.08 3.08
2459 4464 6.210984 CAGTTAGAGAACCAAGGTACTACCTT 59.789 42.308 13.99 13.99 45.16 3.50
2460 4465 6.436847 AGTTAGAGAACCAAGGTACTACCTTC 59.563 42.308 16.50 6.98 44.82 3.46
2461 4466 8.709499 AGTTAGAGAACCAAGGTACTACCTTCG 61.709 44.444 16.50 13.21 44.82 3.79
2477 4482 5.579564 ACCTTCGTCTAGGTGAATAAGTC 57.420 43.478 5.96 0.00 46.71 3.01
2478 4483 5.014858 ACCTTCGTCTAGGTGAATAAGTCA 58.985 41.667 5.96 0.00 46.71 3.41
2479 4484 5.657302 ACCTTCGTCTAGGTGAATAAGTCAT 59.343 40.000 5.96 0.00 46.71 3.06
2480 4485 6.154706 ACCTTCGTCTAGGTGAATAAGTCATT 59.845 38.462 5.96 0.00 46.71 2.57
2481 4486 6.697892 CCTTCGTCTAGGTGAATAAGTCATTC 59.302 42.308 0.00 0.00 43.01 2.67
2482 4487 5.817988 TCGTCTAGGTGAATAAGTCATTCG 58.182 41.667 0.00 0.00 45.25 3.34
2487 4492 3.383546 GTGAATAAGTCATTCGCGCAA 57.616 42.857 8.75 0.78 45.25 4.85
2488 4493 3.940303 GTGAATAAGTCATTCGCGCAAT 58.060 40.909 8.75 3.54 45.25 3.56
2489 4494 3.720818 GTGAATAAGTCATTCGCGCAATG 59.279 43.478 19.88 19.88 45.25 2.82
2490 4495 2.389713 ATAAGTCATTCGCGCAATGC 57.610 45.000 20.66 16.74 41.72 3.56
2491 4496 1.368641 TAAGTCATTCGCGCAATGCT 58.631 45.000 20.66 18.06 41.72 3.79
2492 4497 1.368641 AAGTCATTCGCGCAATGCTA 58.631 45.000 20.66 8.13 41.72 3.49
2493 4498 0.933097 AGTCATTCGCGCAATGCTAG 59.067 50.000 20.66 0.00 41.72 3.42
2494 4499 0.041839 GTCATTCGCGCAATGCTAGG 60.042 55.000 20.66 0.00 41.72 3.02
2495 4500 0.461870 TCATTCGCGCAATGCTAGGT 60.462 50.000 20.66 0.00 41.72 3.08
2496 4501 0.041839 CATTCGCGCAATGCTAGGTC 60.042 55.000 8.75 0.00 43.27 3.85
2497 4502 0.461870 ATTCGCGCAATGCTAGGTCA 60.462 50.000 8.75 0.00 43.27 4.02
2498 4503 0.461870 TTCGCGCAATGCTAGGTCAT 60.462 50.000 8.75 0.00 43.27 3.06
2499 4504 0.875908 TCGCGCAATGCTAGGTCATC 60.876 55.000 8.75 0.00 43.27 2.92
2500 4505 1.566563 GCGCAATGCTAGGTCATCG 59.433 57.895 0.30 0.00 41.73 3.84
2501 4506 0.875908 GCGCAATGCTAGGTCATCGA 60.876 55.000 0.30 0.00 41.73 3.59
2502 4507 1.788258 CGCAATGCTAGGTCATCGAT 58.212 50.000 2.94 0.00 0.00 3.59
2503 4508 2.138320 CGCAATGCTAGGTCATCGATT 58.862 47.619 2.94 0.00 0.00 3.34
2504 4509 2.545526 CGCAATGCTAGGTCATCGATTT 59.454 45.455 2.94 0.00 0.00 2.17
2505 4510 3.605461 CGCAATGCTAGGTCATCGATTTG 60.605 47.826 2.94 0.00 0.00 2.32
2506 4511 3.561310 GCAATGCTAGGTCATCGATTTGA 59.439 43.478 0.00 0.00 0.00 2.69
2507 4512 4.319333 GCAATGCTAGGTCATCGATTTGAG 60.319 45.833 0.00 0.00 0.00 3.02
2508 4513 3.459232 TGCTAGGTCATCGATTTGAGG 57.541 47.619 0.00 0.00 0.00 3.86
2509 4514 3.031013 TGCTAGGTCATCGATTTGAGGA 58.969 45.455 0.00 0.00 34.44 3.71
2510 4515 3.450817 TGCTAGGTCATCGATTTGAGGAA 59.549 43.478 0.00 0.00 39.46 3.36
2511 4516 3.804873 GCTAGGTCATCGATTTGAGGAAC 59.195 47.826 0.00 0.00 45.40 3.62
2516 4521 6.737254 GGTCATCGATTTGAGGAACTAAAA 57.263 37.500 0.00 0.00 43.92 1.52
2517 4522 7.141100 GGTCATCGATTTGAGGAACTAAAAA 57.859 36.000 0.00 0.00 42.89 1.94
2518 4523 7.762382 GGTCATCGATTTGAGGAACTAAAAAT 58.238 34.615 0.00 0.00 42.89 1.82
2519 4524 7.698130 GGTCATCGATTTGAGGAACTAAAAATG 59.302 37.037 0.00 0.00 42.89 2.32
2520 4525 8.237267 GTCATCGATTTGAGGAACTAAAAATGT 58.763 33.333 0.00 0.00 42.89 2.71
2521 4526 8.236586 TCATCGATTTGAGGAACTAAAAATGTG 58.763 33.333 0.00 0.00 42.89 3.21
2522 4527 7.504924 TCGATTTGAGGAACTAAAAATGTGT 57.495 32.000 0.00 0.00 42.89 3.72
2523 4528 7.936584 TCGATTTGAGGAACTAAAAATGTGTT 58.063 30.769 0.00 0.00 42.89 3.32
2524 4529 9.058174 TCGATTTGAGGAACTAAAAATGTGTTA 57.942 29.630 0.00 0.00 42.89 2.41
2525 4530 9.840427 CGATTTGAGGAACTAAAAATGTGTTAT 57.160 29.630 0.00 0.00 42.89 1.89
2560 4565 8.951954 AAAGTATATCACTAGATTTCTACGCG 57.048 34.615 3.53 3.53 36.04 6.01
2561 4566 7.074507 AGTATATCACTAGATTTCTACGCGG 57.925 40.000 12.47 0.00 34.98 6.46
2562 4567 6.877855 AGTATATCACTAGATTTCTACGCGGA 59.122 38.462 12.47 0.00 34.98 5.54
2563 4568 6.761099 ATATCACTAGATTTCTACGCGGAT 57.239 37.500 12.47 0.65 35.67 4.18
2564 4569 4.224715 TCACTAGATTTCTACGCGGATG 57.775 45.455 12.47 0.00 0.00 3.51
2565 4570 3.630769 TCACTAGATTTCTACGCGGATGT 59.369 43.478 12.47 0.00 0.00 3.06
2566 4571 4.818005 TCACTAGATTTCTACGCGGATGTA 59.182 41.667 12.47 0.00 0.00 2.29
2567 4572 5.049612 TCACTAGATTTCTACGCGGATGTAG 60.050 44.000 12.47 10.48 42.57 2.74
2568 4573 4.820716 ACTAGATTTCTACGCGGATGTAGT 59.179 41.667 12.47 11.07 42.01 2.73
2569 4574 4.650754 AGATTTCTACGCGGATGTAGTT 57.349 40.909 12.47 0.00 42.01 2.24
2570 4575 5.007385 AGATTTCTACGCGGATGTAGTTT 57.993 39.130 12.47 0.00 42.01 2.66
2571 4576 5.041940 AGATTTCTACGCGGATGTAGTTTC 58.958 41.667 12.47 2.64 42.01 2.78
2572 4577 4.445452 TTTCTACGCGGATGTAGTTTCT 57.555 40.909 12.47 0.00 42.01 2.52
2573 4578 5.565592 TTTCTACGCGGATGTAGTTTCTA 57.434 39.130 12.47 0.00 42.01 2.10
2574 4579 5.565592 TTCTACGCGGATGTAGTTTCTAA 57.434 39.130 12.47 0.00 42.01 2.10
2575 4580 5.565592 TCTACGCGGATGTAGTTTCTAAA 57.434 39.130 12.47 0.00 42.01 1.85
2576 4581 6.140303 TCTACGCGGATGTAGTTTCTAAAT 57.860 37.500 12.47 0.00 42.01 1.40
2577 4582 7.263100 TCTACGCGGATGTAGTTTCTAAATA 57.737 36.000 12.47 0.00 42.01 1.40
2578 4583 7.879070 TCTACGCGGATGTAGTTTCTAAATAT 58.121 34.615 12.47 0.00 42.01 1.28
2579 4584 9.002600 TCTACGCGGATGTAGTTTCTAAATATA 57.997 33.333 12.47 0.00 42.01 0.86
2580 4585 9.784680 CTACGCGGATGTAGTTTCTAAATATAT 57.215 33.333 12.47 0.00 37.61 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
235 247 3.505680 TCGCCAAGTTCTTATTTGTGCAT 59.494 39.130 0.00 0.00 0.00 3.96
255 268 6.223852 AGGACAGTTATAAATGGCTGTATCG 58.776 40.000 17.66 0.00 41.59 2.92
258 271 7.936847 CCATTAGGACAGTTATAAATGGCTGTA 59.063 37.037 17.66 7.78 41.59 2.74
294 2232 2.872245 ACATGCATACGTCTTATGTGCC 59.128 45.455 0.00 0.00 40.02 5.01
305 2243 4.794762 CACTTTTGGAATCACATGCATACG 59.205 41.667 0.00 0.00 0.00 3.06
348 2286 9.533831 AGGACATTTTATTTCATACTTTCCACT 57.466 29.630 0.00 0.00 0.00 4.00
366 2304 5.197451 TGTGTTGTTGTTCCTAGGACATTT 58.803 37.500 12.22 0.00 0.00 2.32
417 2355 3.119291 CGTCCTGATTGTCATGCTAGAC 58.881 50.000 0.00 2.66 38.99 2.59
443 2384 0.912486 AGCAACACATACCCTCCTCC 59.088 55.000 0.00 0.00 0.00 4.30
459 2400 0.325602 CGGGGGTAAACTAACCAGCA 59.674 55.000 0.00 0.00 41.67 4.41
630 2571 1.546323 CCTTCTTCTTGCCTTGCTCCA 60.546 52.381 0.00 0.00 0.00 3.86
653 2594 2.606519 TAACGCCCCCAGAGCACT 60.607 61.111 0.00 0.00 0.00 4.40
742 2683 2.486042 GACGAGCTGGAGACGGTC 59.514 66.667 1.44 0.00 39.64 4.79
769 2713 2.514824 GAGAAGACCATGGCCGCC 60.515 66.667 13.04 1.04 0.00 6.13
833 2804 1.474879 CAAGACGGGGAAGAGAGAGAC 59.525 57.143 0.00 0.00 0.00 3.36
837 2808 1.137872 CATCCAAGACGGGGAAGAGAG 59.862 57.143 0.00 0.00 38.09 3.20
891 2862 3.146618 AGATAACGTGCCGAACTGTAG 57.853 47.619 0.00 0.00 0.00 2.74
892 2863 3.581024 AAGATAACGTGCCGAACTGTA 57.419 42.857 0.00 0.00 0.00 2.74
893 2864 2.450609 AAGATAACGTGCCGAACTGT 57.549 45.000 0.00 0.00 0.00 3.55
894 2865 2.222508 CGAAAGATAACGTGCCGAACTG 60.223 50.000 0.00 0.00 0.00 3.16
896 2867 1.987770 TCGAAAGATAACGTGCCGAAC 59.012 47.619 0.00 0.00 33.31 3.95
897 2868 2.256174 CTCGAAAGATAACGTGCCGAA 58.744 47.619 0.00 0.00 40.84 4.30
898 2869 1.904144 CTCGAAAGATAACGTGCCGA 58.096 50.000 0.00 0.00 40.84 5.54
899 2870 0.297820 GCTCGAAAGATAACGTGCCG 59.702 55.000 0.00 0.00 41.11 5.69
921 2895 4.729227 AACAACACGGAAAAACCAGAAT 57.271 36.364 0.00 0.00 38.90 2.40
1296 3292 3.939592 GAGATTACTGAAACCGGAAAGGG 59.060 47.826 9.46 0.00 46.96 3.95
1328 3324 4.767255 GGTGAGTGCCCTGCCTCG 62.767 72.222 0.00 0.00 31.72 4.63
1392 3388 0.678048 GCGCCTCCACCTCTTTGATT 60.678 55.000 0.00 0.00 0.00 2.57
1394 3390 2.347490 GCGCCTCCACCTCTTTGA 59.653 61.111 0.00 0.00 0.00 2.69
1410 3406 0.452784 CGTTCGCAAAGTAAGCCTGC 60.453 55.000 0.00 0.00 0.00 4.85
1683 3679 9.594478 CGTAATGGATAAATATAGGTATGCACA 57.406 33.333 0.00 0.00 31.86 4.57
1709 3705 7.072177 TCACAATTCAGAAATCGGTATGAAC 57.928 36.000 0.00 0.00 34.71 3.18
1799 3802 3.947868 ACAGCTGACAGCATCTTACAAT 58.052 40.909 28.43 2.08 45.56 2.71
1811 3816 5.089970 ACATGCTATAGAAACAGCTGACA 57.910 39.130 23.35 4.36 38.63 3.58
1816 3821 8.450964 TCACTAAAAACATGCTATAGAAACAGC 58.549 33.333 3.21 0.00 38.31 4.40
1841 3846 4.537135 TGGTGAGTCTTACCACATTCTC 57.463 45.455 12.34 0.00 43.00 2.87
1850 3855 4.868734 CCCTTATCGTTTGGTGAGTCTTAC 59.131 45.833 0.00 0.00 0.00 2.34
1858 3863 0.391927 TCGGCCCTTATCGTTTGGTG 60.392 55.000 0.00 0.00 0.00 4.17
1859 3864 0.325602 TTCGGCCCTTATCGTTTGGT 59.674 50.000 0.00 0.00 0.00 3.67
1861 3866 0.372334 CGTTCGGCCCTTATCGTTTG 59.628 55.000 0.00 0.00 0.00 2.93
1876 3881 2.811317 CGGCTGCTCCTGACGTTC 60.811 66.667 0.00 0.00 0.00 3.95
1894 3899 4.548513 AGGAGGGGGCCTAGCGAG 62.549 72.222 0.84 0.00 36.22 5.03
1895 3900 4.541648 GAGGAGGGGGCCTAGCGA 62.542 72.222 0.84 0.00 38.73 4.93
1898 3903 4.583442 GGGGAGGAGGGGGCCTAG 62.583 77.778 0.84 0.00 38.73 3.02
1961 3966 2.351276 CCACCTTCCCGTTCCTGG 59.649 66.667 0.00 0.00 0.00 4.45
1962 3967 2.359975 GCCACCTTCCCGTTCCTG 60.360 66.667 0.00 0.00 0.00 3.86
1963 3968 4.016706 CGCCACCTTCCCGTTCCT 62.017 66.667 0.00 0.00 0.00 3.36
1981 3986 4.365505 GAGCTAGATCCGCCCCGC 62.366 72.222 0.00 0.00 0.00 6.13
1982 3987 3.686045 GGAGCTAGATCCGCCCCG 61.686 72.222 12.06 0.00 0.00 5.73
1983 3988 2.203714 AGGAGCTAGATCCGCCCC 60.204 66.667 20.98 0.00 44.65 5.80
1984 3989 2.631580 CGAGGAGCTAGATCCGCCC 61.632 68.421 22.83 14.31 44.65 6.13
1985 3990 2.958576 CGAGGAGCTAGATCCGCC 59.041 66.667 22.83 16.55 44.65 6.13
1986 3991 2.257067 GCGAGGAGCTAGATCCGC 59.743 66.667 20.98 20.28 44.65 5.54
2003 4008 4.024984 TGAGGGTGGGAGGAGGGG 62.025 72.222 0.00 0.00 0.00 4.79
2004 4009 2.689034 GTGAGGGTGGGAGGAGGG 60.689 72.222 0.00 0.00 0.00 4.30
2005 4010 2.122729 TGTGAGGGTGGGAGGAGG 59.877 66.667 0.00 0.00 0.00 4.30
2006 4011 2.294078 GGTGTGAGGGTGGGAGGAG 61.294 68.421 0.00 0.00 0.00 3.69
2007 4012 2.203938 GGTGTGAGGGTGGGAGGA 60.204 66.667 0.00 0.00 0.00 3.71
2008 4013 3.330720 GGGTGTGAGGGTGGGAGG 61.331 72.222 0.00 0.00 0.00 4.30
2009 4014 3.330720 GGGGTGTGAGGGTGGGAG 61.331 72.222 0.00 0.00 0.00 4.30
2025 4030 4.802051 CATGGGGGTGAGGCACGG 62.802 72.222 0.00 0.00 34.83 4.94
2026 4031 4.802051 CCATGGGGGTGAGGCACG 62.802 72.222 2.85 0.00 34.83 5.34
2030 4035 4.828296 GCTGCCATGGGGGTGAGG 62.828 72.222 15.13 0.00 39.65 3.86
2031 4036 3.736224 AGCTGCCATGGGGGTGAG 61.736 66.667 15.13 0.00 39.65 3.51
2032 4037 4.051167 CAGCTGCCATGGGGGTGA 62.051 66.667 15.13 0.00 39.65 4.02
2066 4071 4.570663 GGACCGGAGCCGACATCG 62.571 72.222 9.46 0.00 42.83 3.84
2067 4072 3.140225 GAGGACCGGAGCCGACATC 62.140 68.421 9.46 7.61 42.83 3.06
2068 4073 3.148279 GAGGACCGGAGCCGACAT 61.148 66.667 9.46 1.76 42.83 3.06
2079 4084 4.554036 GCAGGCCATCGGAGGACC 62.554 72.222 5.01 0.00 37.41 4.46
2080 4085 4.554036 GGCAGGCCATCGGAGGAC 62.554 72.222 5.01 0.00 36.73 3.85
2101 4106 4.335647 AGGTTGGCTGGAGGTGCG 62.336 66.667 0.00 0.00 0.00 5.34
2102 4107 2.360475 GAGGTTGGCTGGAGGTGC 60.360 66.667 0.00 0.00 0.00 5.01
2103 4108 2.046892 CGAGGTTGGCTGGAGGTG 60.047 66.667 0.00 0.00 0.00 4.00
2104 4109 4.021925 GCGAGGTTGGCTGGAGGT 62.022 66.667 0.00 0.00 0.00 3.85
2105 4110 4.785453 GGCGAGGTTGGCTGGAGG 62.785 72.222 0.00 0.00 0.00 4.30
2106 4111 4.785453 GGGCGAGGTTGGCTGGAG 62.785 72.222 0.00 0.00 34.31 3.86
2111 4116 2.942648 GATAGTGGGGCGAGGTTGGC 62.943 65.000 0.00 0.00 0.00 4.52
2112 4117 1.146263 GATAGTGGGGCGAGGTTGG 59.854 63.158 0.00 0.00 0.00 3.77
2113 4118 1.227263 CGATAGTGGGGCGAGGTTG 60.227 63.158 0.00 0.00 0.00 3.77
2114 4119 3.217231 CGATAGTGGGGCGAGGTT 58.783 61.111 0.00 0.00 0.00 3.50
2123 4128 3.489780 GGGGACGACCAACGATAGTGG 62.490 61.905 6.20 0.00 46.71 4.00
2124 4129 0.179119 GGGGACGACCAACGATAGTG 60.179 60.000 6.20 0.00 46.71 2.74
2125 4130 0.612732 TGGGGACGACCAACGATAGT 60.613 55.000 6.20 0.00 45.49 2.12
2126 4131 0.533491 TTGGGGACGACCAACGATAG 59.467 55.000 6.20 0.00 45.19 2.08
2127 4132 2.668612 TTGGGGACGACCAACGATA 58.331 52.632 6.20 0.00 45.19 2.92
2128 4133 3.474000 TTGGGGACGACCAACGAT 58.526 55.556 6.20 0.00 45.19 3.73
2132 4137 1.527380 GCAAGTTGGGGACGACCAA 60.527 57.895 6.20 6.57 46.68 3.67
2133 4138 2.112297 GCAAGTTGGGGACGACCA 59.888 61.111 6.20 0.00 46.68 4.02
2134 4139 2.671963 GGCAAGTTGGGGACGACC 60.672 66.667 4.75 0.00 46.68 4.79
2135 4140 2.671963 GGGCAAGTTGGGGACGAC 60.672 66.667 4.75 0.00 45.77 4.34
2136 4141 4.323477 CGGGCAAGTTGGGGACGA 62.323 66.667 4.75 0.00 0.00 4.20
2137 4142 2.734948 TTACGGGCAAGTTGGGGACG 62.735 60.000 4.75 0.00 0.00 4.79
2138 4143 0.958876 CTTACGGGCAAGTTGGGGAC 60.959 60.000 4.75 0.00 0.00 4.46
2139 4144 1.377229 CTTACGGGCAAGTTGGGGA 59.623 57.895 4.75 0.00 0.00 4.81
2140 4145 2.340328 GCTTACGGGCAAGTTGGGG 61.340 63.158 4.75 0.00 0.00 4.96
2141 4146 2.340328 GGCTTACGGGCAAGTTGGG 61.340 63.158 4.75 0.00 40.53 4.12
2142 4147 1.303317 AGGCTTACGGGCAAGTTGG 60.303 57.895 4.75 0.00 43.56 3.77
2143 4148 1.635663 CGAGGCTTACGGGCAAGTTG 61.636 60.000 0.00 0.00 43.56 3.16
2144 4149 1.375523 CGAGGCTTACGGGCAAGTT 60.376 57.895 0.00 0.00 43.56 2.66
2145 4150 2.264794 CGAGGCTTACGGGCAAGT 59.735 61.111 0.00 0.00 43.56 3.16
2146 4151 3.195698 GCGAGGCTTACGGGCAAG 61.196 66.667 0.00 0.00 43.56 4.01
2147 4152 4.770874 GGCGAGGCTTACGGGCAA 62.771 66.667 0.00 0.00 43.56 4.52
2150 4155 4.222847 GAGGGCGAGGCTTACGGG 62.223 72.222 0.00 0.00 0.00 5.28
2151 4156 3.140225 GAGAGGGCGAGGCTTACGG 62.140 68.421 0.00 0.00 0.00 4.02
2152 4157 2.413765 GAGAGGGCGAGGCTTACG 59.586 66.667 0.00 0.00 0.00 3.18
2153 4158 2.816012 GGAGAGGGCGAGGCTTAC 59.184 66.667 0.00 0.00 0.00 2.34
2154 4159 2.833582 CGGAGAGGGCGAGGCTTA 60.834 66.667 0.00 0.00 0.00 3.09
2179 4184 4.414956 ATCTCAGGGGCACGGGGA 62.415 66.667 0.00 0.00 0.00 4.81
2180 4185 3.866582 GATCTCAGGGGCACGGGG 61.867 72.222 0.00 0.00 0.00 5.73
2181 4186 2.765807 AGATCTCAGGGGCACGGG 60.766 66.667 0.00 0.00 0.00 5.28
2182 4187 1.406065 ATGAGATCTCAGGGGCACGG 61.406 60.000 28.26 0.00 43.61 4.94
2183 4188 0.033228 GATGAGATCTCAGGGGCACG 59.967 60.000 28.26 0.00 43.61 5.34
2184 4189 1.070445 CAGATGAGATCTCAGGGGCAC 59.930 57.143 28.26 15.19 43.61 5.01
2185 4190 1.421480 CAGATGAGATCTCAGGGGCA 58.579 55.000 28.26 6.78 43.61 5.36
2186 4191 0.686224 CCAGATGAGATCTCAGGGGC 59.314 60.000 28.26 17.53 43.61 5.80
2187 4192 1.693062 CACCAGATGAGATCTCAGGGG 59.307 57.143 29.65 28.10 43.61 4.79
2188 4193 1.070445 GCACCAGATGAGATCTCAGGG 59.930 57.143 28.26 27.51 43.61 4.45
2189 4194 1.070445 GGCACCAGATGAGATCTCAGG 59.930 57.143 28.26 24.84 43.61 3.86
2190 4195 2.036217 GAGGCACCAGATGAGATCTCAG 59.964 54.545 28.26 17.80 43.61 3.35
2191 4196 2.037901 GAGGCACCAGATGAGATCTCA 58.962 52.381 27.03 27.03 44.59 3.27
2192 4197 2.297033 GAGAGGCACCAGATGAGATCTC 59.703 54.545 16.21 16.21 37.58 2.75
2193 4198 2.318908 GAGAGGCACCAGATGAGATCT 58.681 52.381 0.00 0.00 41.15 2.75
2194 4199 1.000385 CGAGAGGCACCAGATGAGATC 60.000 57.143 0.00 0.00 0.00 2.75
2195 4200 1.039068 CGAGAGGCACCAGATGAGAT 58.961 55.000 0.00 0.00 0.00 2.75
2196 4201 0.034089 TCGAGAGGCACCAGATGAGA 60.034 55.000 0.00 0.00 0.00 3.27
2197 4202 1.039068 ATCGAGAGGCACCAGATGAG 58.961 55.000 0.00 0.00 0.00 2.90
2198 4203 0.749049 CATCGAGAGGCACCAGATGA 59.251 55.000 10.21 0.00 40.62 2.92
2199 4204 0.463204 ACATCGAGAGGCACCAGATG 59.537 55.000 12.91 12.91 42.95 2.90
2200 4205 0.749649 GACATCGAGAGGCACCAGAT 59.250 55.000 0.00 0.00 0.00 2.90
2201 4206 1.323271 GGACATCGAGAGGCACCAGA 61.323 60.000 0.00 0.00 0.00 3.86
2202 4207 1.142748 GGACATCGAGAGGCACCAG 59.857 63.158 0.00 0.00 0.00 4.00
2203 4208 0.904865 AAGGACATCGAGAGGCACCA 60.905 55.000 0.00 0.00 0.00 4.17
2204 4209 0.179097 GAAGGACATCGAGAGGCACC 60.179 60.000 0.00 0.00 0.00 5.01
2205 4210 0.820871 AGAAGGACATCGAGAGGCAC 59.179 55.000 0.00 0.00 0.00 5.01
2206 4211 1.107114 GAGAAGGACATCGAGAGGCA 58.893 55.000 0.00 0.00 0.00 4.75
2207 4212 0.387565 GGAGAAGGACATCGAGAGGC 59.612 60.000 0.00 0.00 0.00 4.70
2208 4213 0.665835 CGGAGAAGGACATCGAGAGG 59.334 60.000 0.00 0.00 0.00 3.69
2209 4214 0.665835 CCGGAGAAGGACATCGAGAG 59.334 60.000 0.00 0.00 0.00 3.20
2210 4215 1.384989 GCCGGAGAAGGACATCGAGA 61.385 60.000 5.05 0.00 0.00 4.04
2211 4216 1.066587 GCCGGAGAAGGACATCGAG 59.933 63.158 5.05 0.00 0.00 4.04
2212 4217 1.379977 AGCCGGAGAAGGACATCGA 60.380 57.895 5.05 0.00 0.00 3.59
2213 4218 1.227089 CAGCCGGAGAAGGACATCG 60.227 63.158 5.05 0.00 0.00 3.84
2214 4219 1.522580 GCAGCCGGAGAAGGACATC 60.523 63.158 5.05 0.00 0.00 3.06
2215 4220 1.992277 AGCAGCCGGAGAAGGACAT 60.992 57.895 5.05 0.00 0.00 3.06
2216 4221 2.604686 AGCAGCCGGAGAAGGACA 60.605 61.111 5.05 0.00 0.00 4.02
2217 4222 2.125350 CAGCAGCCGGAGAAGGAC 60.125 66.667 5.05 0.00 0.00 3.85
2218 4223 4.087892 GCAGCAGCCGGAGAAGGA 62.088 66.667 5.05 0.00 33.58 3.36
2219 4224 4.399395 TGCAGCAGCCGGAGAAGG 62.399 66.667 5.05 0.00 41.13 3.46
2220 4225 3.123620 GTGCAGCAGCCGGAGAAG 61.124 66.667 5.05 0.00 41.13 2.85
2227 4232 3.730761 CAAGTCCGTGCAGCAGCC 61.731 66.667 0.00 0.00 41.13 4.85
2228 4233 4.395583 GCAAGTCCGTGCAGCAGC 62.396 66.667 0.00 0.00 44.29 5.25
2229 4234 3.730761 GGCAAGTCCGTGCAGCAG 61.731 66.667 0.00 0.00 46.81 4.24
2322 4327 4.280019 AACCAACGGGGCTGGGTC 62.280 66.667 0.00 0.00 42.05 4.46
2323 4328 4.280019 GAACCAACGGGGCTGGGT 62.280 66.667 0.00 0.00 42.05 4.51
2324 4329 3.966543 AGAACCAACGGGGCTGGG 61.967 66.667 0.00 0.00 42.05 4.45
2325 4330 2.672996 CAGAACCAACGGGGCTGG 60.673 66.667 0.00 0.00 42.05 4.85
2326 4331 3.365265 GCAGAACCAACGGGGCTG 61.365 66.667 0.00 0.00 42.05 4.85
2327 4332 3.570212 AGCAGAACCAACGGGGCT 61.570 61.111 0.00 0.00 42.05 5.19
2328 4333 3.365265 CAGCAGAACCAACGGGGC 61.365 66.667 0.00 0.00 42.05 5.80
2329 4334 3.365265 GCAGCAGAACCAACGGGG 61.365 66.667 0.00 0.00 44.81 5.73
2330 4335 2.281761 AGCAGCAGAACCAACGGG 60.282 61.111 0.00 0.00 41.29 5.28
2331 4336 2.620112 CCAGCAGCAGAACCAACGG 61.620 63.158 0.00 0.00 0.00 4.44
2332 4337 2.949106 CCAGCAGCAGAACCAACG 59.051 61.111 0.00 0.00 0.00 4.10
2333 4338 2.647297 GCCAGCAGCAGAACCAAC 59.353 61.111 0.00 0.00 42.97 3.77
2334 4339 2.598394 GGCCAGCAGCAGAACCAA 60.598 61.111 0.00 0.00 46.50 3.67
2337 4342 2.980233 AACGGCCAGCAGCAGAAC 60.980 61.111 2.24 0.00 46.50 3.01
2338 4343 2.979676 CAACGGCCAGCAGCAGAA 60.980 61.111 2.24 0.00 46.50 3.02
2339 4344 2.390306 TAACAACGGCCAGCAGCAGA 62.390 55.000 2.24 0.00 46.50 4.26
2340 4345 1.965930 TAACAACGGCCAGCAGCAG 60.966 57.895 2.24 0.00 46.50 4.24
2341 4346 2.112087 TAACAACGGCCAGCAGCA 59.888 55.556 2.24 0.00 46.50 4.41
2342 4347 1.515521 AAGTAACAACGGCCAGCAGC 61.516 55.000 2.24 0.00 42.60 5.25
2343 4348 0.517316 GAAGTAACAACGGCCAGCAG 59.483 55.000 2.24 0.00 0.00 4.24
2344 4349 0.107831 AGAAGTAACAACGGCCAGCA 59.892 50.000 2.24 0.00 0.00 4.41
2345 4350 1.069227 CAAGAAGTAACAACGGCCAGC 60.069 52.381 2.24 0.00 0.00 4.85
2346 4351 2.480419 CTCAAGAAGTAACAACGGCCAG 59.520 50.000 2.24 0.00 0.00 4.85
2347 4352 2.489971 CTCAAGAAGTAACAACGGCCA 58.510 47.619 2.24 0.00 0.00 5.36
2348 4353 1.197036 GCTCAAGAAGTAACAACGGCC 59.803 52.381 0.00 0.00 0.00 6.13
2349 4354 2.143925 AGCTCAAGAAGTAACAACGGC 58.856 47.619 0.00 0.00 0.00 5.68
2350 4355 3.607078 GCAAGCTCAAGAAGTAACAACGG 60.607 47.826 0.00 0.00 0.00 4.44
2351 4356 3.545633 GCAAGCTCAAGAAGTAACAACG 58.454 45.455 0.00 0.00 0.00 4.10
2352 4357 3.002348 ACGCAAGCTCAAGAAGTAACAAC 59.998 43.478 0.00 0.00 45.62 3.32
2353 4358 3.202906 ACGCAAGCTCAAGAAGTAACAA 58.797 40.909 0.00 0.00 45.62 2.83
2354 4359 2.833794 ACGCAAGCTCAAGAAGTAACA 58.166 42.857 0.00 0.00 45.62 2.41
2355 4360 3.247648 TCAACGCAAGCTCAAGAAGTAAC 59.752 43.478 0.00 0.00 45.62 2.50
2356 4361 3.462982 TCAACGCAAGCTCAAGAAGTAA 58.537 40.909 0.00 0.00 45.62 2.24
2357 4362 3.106242 TCAACGCAAGCTCAAGAAGTA 57.894 42.857 0.00 0.00 45.62 2.24
2358 4363 1.953559 TCAACGCAAGCTCAAGAAGT 58.046 45.000 0.00 0.00 45.62 3.01
2359 4364 3.549299 AATCAACGCAAGCTCAAGAAG 57.451 42.857 0.00 0.00 45.62 2.85
2360 4365 3.988379 AAATCAACGCAAGCTCAAGAA 57.012 38.095 0.00 0.00 45.62 2.52
2361 4366 3.988379 AAAATCAACGCAAGCTCAAGA 57.012 38.095 0.00 0.00 45.62 3.02
2380 4385 7.416964 TCACCATTTTCTCTTCAAGGAAAAA 57.583 32.000 14.16 8.39 42.25 1.94
2381 4386 7.069826 ACATCACCATTTTCTCTTCAAGGAAAA 59.930 33.333 13.11 13.11 42.83 2.29
2382 4387 6.550854 ACATCACCATTTTCTCTTCAAGGAAA 59.449 34.615 0.00 0.00 36.88 3.13
2383 4388 6.070656 ACATCACCATTTTCTCTTCAAGGAA 58.929 36.000 0.00 0.00 0.00 3.36
2384 4389 5.634118 ACATCACCATTTTCTCTTCAAGGA 58.366 37.500 0.00 0.00 0.00 3.36
2385 4390 5.972107 ACATCACCATTTTCTCTTCAAGG 57.028 39.130 0.00 0.00 0.00 3.61
2386 4391 6.149973 TGCTACATCACCATTTTCTCTTCAAG 59.850 38.462 0.00 0.00 0.00 3.02
2387 4392 6.003326 TGCTACATCACCATTTTCTCTTCAA 58.997 36.000 0.00 0.00 0.00 2.69
2388 4393 5.559770 TGCTACATCACCATTTTCTCTTCA 58.440 37.500 0.00 0.00 0.00 3.02
2389 4394 6.500684 TTGCTACATCACCATTTTCTCTTC 57.499 37.500 0.00 0.00 0.00 2.87
2390 4395 6.491403 ACTTTGCTACATCACCATTTTCTCTT 59.509 34.615 0.00 0.00 0.00 2.85
2391 4396 6.006449 ACTTTGCTACATCACCATTTTCTCT 58.994 36.000 0.00 0.00 0.00 3.10
2392 4397 6.259550 ACTTTGCTACATCACCATTTTCTC 57.740 37.500 0.00 0.00 0.00 2.87
2393 4398 7.168219 TCTACTTTGCTACATCACCATTTTCT 58.832 34.615 0.00 0.00 0.00 2.52
2394 4399 7.334421 TCTCTACTTTGCTACATCACCATTTTC 59.666 37.037 0.00 0.00 0.00 2.29
2395 4400 7.168219 TCTCTACTTTGCTACATCACCATTTT 58.832 34.615 0.00 0.00 0.00 1.82
2396 4401 6.711277 TCTCTACTTTGCTACATCACCATTT 58.289 36.000 0.00 0.00 0.00 2.32
2397 4402 6.299805 TCTCTACTTTGCTACATCACCATT 57.700 37.500 0.00 0.00 0.00 3.16
2398 4403 5.939764 TCTCTACTTTGCTACATCACCAT 57.060 39.130 0.00 0.00 0.00 3.55
2399 4404 5.939764 ATCTCTACTTTGCTACATCACCA 57.060 39.130 0.00 0.00 0.00 4.17
2400 4405 8.894768 ATTTATCTCTACTTTGCTACATCACC 57.105 34.615 0.00 0.00 0.00 4.02
2408 4413 9.785982 GAGGGAAATATTTATCTCTACTTTGCT 57.214 33.333 16.74 0.00 0.00 3.91
2409 4414 9.561069 TGAGGGAAATATTTATCTCTACTTTGC 57.439 33.333 21.13 1.03 0.00 3.68
2421 4426 9.053472 TGGTTCTCTAACTGAGGGAAATATTTA 57.947 33.333 0.00 0.00 46.58 1.40
2422 4427 7.928873 TGGTTCTCTAACTGAGGGAAATATTT 58.071 34.615 0.00 0.00 46.58 1.40
2423 4428 7.510675 TGGTTCTCTAACTGAGGGAAATATT 57.489 36.000 0.00 0.00 46.58 1.28
2424 4429 7.366011 CCTTGGTTCTCTAACTGAGGGAAATAT 60.366 40.741 0.00 0.00 46.58 1.28
2425 4430 6.070194 CCTTGGTTCTCTAACTGAGGGAAATA 60.070 42.308 0.00 0.00 46.58 1.40
2426 4431 5.280727 CCTTGGTTCTCTAACTGAGGGAAAT 60.281 44.000 0.00 0.00 46.58 2.17
2427 4432 4.041691 CCTTGGTTCTCTAACTGAGGGAAA 59.958 45.833 0.00 0.00 46.58 3.13
2428 4433 3.583086 CCTTGGTTCTCTAACTGAGGGAA 59.417 47.826 0.00 0.00 42.77 3.97
2429 4434 3.173965 CCTTGGTTCTCTAACTGAGGGA 58.826 50.000 0.00 0.00 42.86 4.20
2430 4435 2.907042 ACCTTGGTTCTCTAACTGAGGG 59.093 50.000 12.00 0.00 42.86 4.30
2431 4436 4.773149 AGTACCTTGGTTCTCTAACTGAGG 59.227 45.833 0.00 0.00 42.86 3.86
2432 4437 5.986501 AGTACCTTGGTTCTCTAACTGAG 57.013 43.478 0.00 0.00 43.96 3.35
2433 4438 5.713861 GGTAGTACCTTGGTTCTCTAACTGA 59.286 44.000 12.41 0.00 34.73 3.41
2434 4439 5.963594 GGTAGTACCTTGGTTCTCTAACTG 58.036 45.833 12.41 0.00 34.73 3.16
2456 4461 5.578005 TGACTTATTCACCTAGACGAAGG 57.422 43.478 0.00 0.00 42.82 3.46
2457 4462 6.415280 CGAATGACTTATTCACCTAGACGAAG 59.585 42.308 0.00 0.00 44.42 3.79
2458 4463 6.263344 CGAATGACTTATTCACCTAGACGAA 58.737 40.000 0.00 0.00 44.42 3.85
2459 4464 5.732528 GCGAATGACTTATTCACCTAGACGA 60.733 44.000 0.00 0.00 44.42 4.20
2460 4465 4.441415 GCGAATGACTTATTCACCTAGACG 59.559 45.833 0.00 0.00 44.42 4.18
2461 4466 4.441415 CGCGAATGACTTATTCACCTAGAC 59.559 45.833 0.00 0.00 44.42 2.59
2462 4467 4.607955 CGCGAATGACTTATTCACCTAGA 58.392 43.478 0.00 0.00 44.42 2.43
2463 4468 3.182572 GCGCGAATGACTTATTCACCTAG 59.817 47.826 12.10 0.00 44.42 3.02
2464 4469 3.120792 GCGCGAATGACTTATTCACCTA 58.879 45.455 12.10 0.00 44.42 3.08
2465 4470 1.933853 GCGCGAATGACTTATTCACCT 59.066 47.619 12.10 0.00 44.42 4.00
2466 4471 1.663643 TGCGCGAATGACTTATTCACC 59.336 47.619 12.10 0.00 44.42 4.02
2467 4472 3.383546 TTGCGCGAATGACTTATTCAC 57.616 42.857 12.10 0.00 44.42 3.18
2468 4473 3.788466 GCATTGCGCGAATGACTTATTCA 60.788 43.478 26.22 3.51 43.87 2.57
2469 4474 2.715997 GCATTGCGCGAATGACTTATTC 59.284 45.455 26.22 10.53 43.87 1.75
2470 4475 2.719798 GCATTGCGCGAATGACTTATT 58.280 42.857 26.22 0.00 43.87 1.40
2471 4476 2.389713 GCATTGCGCGAATGACTTAT 57.610 45.000 26.22 0.00 43.87 1.73
2472 4477 3.895806 GCATTGCGCGAATGACTTA 57.104 47.368 26.22 0.00 43.87 2.24
2473 4478 4.771684 GCATTGCGCGAATGACTT 57.228 50.000 26.22 0.00 43.87 3.01
2482 4487 0.875908 TCGATGACCTAGCATTGCGC 60.876 55.000 0.00 0.00 42.91 6.09
2483 4488 1.788258 ATCGATGACCTAGCATTGCG 58.212 50.000 0.00 0.00 31.11 4.85
2484 4489 3.561310 TCAAATCGATGACCTAGCATTGC 59.439 43.478 0.00 0.00 31.11 3.56
2485 4490 4.212847 CCTCAAATCGATGACCTAGCATTG 59.787 45.833 0.00 0.00 0.00 2.82
2486 4491 4.101585 TCCTCAAATCGATGACCTAGCATT 59.898 41.667 0.00 0.00 0.00 3.56
2487 4492 3.643320 TCCTCAAATCGATGACCTAGCAT 59.357 43.478 0.00 0.00 0.00 3.79
2488 4493 3.031013 TCCTCAAATCGATGACCTAGCA 58.969 45.455 0.00 0.00 0.00 3.49
2489 4494 3.735237 TCCTCAAATCGATGACCTAGC 57.265 47.619 0.00 0.00 0.00 3.42
2490 4495 5.269505 AGTTCCTCAAATCGATGACCTAG 57.730 43.478 0.00 0.00 0.00 3.02
2491 4496 6.785337 TTAGTTCCTCAAATCGATGACCTA 57.215 37.500 0.00 0.00 0.00 3.08
2492 4497 5.677319 TTAGTTCCTCAAATCGATGACCT 57.323 39.130 0.00 0.00 0.00 3.85
2493 4498 6.737254 TTTTAGTTCCTCAAATCGATGACC 57.263 37.500 0.00 0.00 0.00 4.02
2494 4499 8.237267 ACATTTTTAGTTCCTCAAATCGATGAC 58.763 33.333 0.00 0.00 0.00 3.06
2495 4500 8.236586 CACATTTTTAGTTCCTCAAATCGATGA 58.763 33.333 0.00 0.00 0.00 2.92
2496 4501 8.023128 ACACATTTTTAGTTCCTCAAATCGATG 58.977 33.333 0.00 0.00 0.00 3.84
2497 4502 8.110860 ACACATTTTTAGTTCCTCAAATCGAT 57.889 30.769 0.00 0.00 0.00 3.59
2498 4503 7.504924 ACACATTTTTAGTTCCTCAAATCGA 57.495 32.000 0.00 0.00 0.00 3.59
2499 4504 9.840427 ATAACACATTTTTAGTTCCTCAAATCG 57.160 29.630 0.00 0.00 0.00 3.34
2534 4539 9.395707 CGCGTAGAAATCTAGTGATATACTTTT 57.604 33.333 0.00 0.00 40.89 2.27
2535 4540 8.021973 CCGCGTAGAAATCTAGTGATATACTTT 58.978 37.037 4.92 0.00 40.89 2.66
2536 4541 7.389884 TCCGCGTAGAAATCTAGTGATATACTT 59.610 37.037 4.92 0.00 40.89 2.24
2537 4542 6.877855 TCCGCGTAGAAATCTAGTGATATACT 59.122 38.462 4.92 0.00 43.56 2.12
2538 4543 7.069852 TCCGCGTAGAAATCTAGTGATATAC 57.930 40.000 4.92 0.00 31.70 1.47
2539 4544 7.336176 ACATCCGCGTAGAAATCTAGTGATATA 59.664 37.037 4.92 0.00 31.70 0.86
2540 4545 6.151312 ACATCCGCGTAGAAATCTAGTGATAT 59.849 38.462 4.92 0.00 31.70 1.63
2541 4546 5.472478 ACATCCGCGTAGAAATCTAGTGATA 59.528 40.000 4.92 0.00 31.70 2.15
2542 4547 4.278669 ACATCCGCGTAGAAATCTAGTGAT 59.721 41.667 4.92 0.00 33.70 3.06
2543 4548 3.630769 ACATCCGCGTAGAAATCTAGTGA 59.369 43.478 4.92 0.00 0.00 3.41
2544 4549 3.966154 ACATCCGCGTAGAAATCTAGTG 58.034 45.455 4.92 0.00 0.00 2.74
2545 4550 4.820716 ACTACATCCGCGTAGAAATCTAGT 59.179 41.667 4.92 0.00 41.21 2.57
2546 4551 5.359716 ACTACATCCGCGTAGAAATCTAG 57.640 43.478 4.92 0.00 41.21 2.43
2547 4552 5.762825 AACTACATCCGCGTAGAAATCTA 57.237 39.130 4.92 0.00 41.21 1.98
2548 4553 4.650754 AACTACATCCGCGTAGAAATCT 57.349 40.909 4.92 0.00 41.21 2.40
2549 4554 5.041940 AGAAACTACATCCGCGTAGAAATC 58.958 41.667 4.92 2.28 41.21 2.17
2550 4555 5.007385 AGAAACTACATCCGCGTAGAAAT 57.993 39.130 4.92 0.00 41.21 2.17
2551 4556 4.445452 AGAAACTACATCCGCGTAGAAA 57.555 40.909 4.92 0.00 41.21 2.52
2552 4557 5.565592 TTAGAAACTACATCCGCGTAGAA 57.434 39.130 4.92 0.00 41.21 2.10
2553 4558 5.565592 TTTAGAAACTACATCCGCGTAGA 57.434 39.130 4.92 0.00 41.21 2.59
2554 4559 9.784680 ATATATTTAGAAACTACATCCGCGTAG 57.215 33.333 4.92 2.22 43.76 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.