>input_sequence_74464
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-------------ATGGAGGCGGCGTCGGCG---------------GCGACGGCGACGATGGTGTTCGTGTACGGCACCC
TGAAGCGCGGGTTTCCCAACCACCCCCGCCTCGCCGCCTTCGACTGCCCCTTCGCCGGCGCGGCCTCCACCGCCGCCCCA
GCCTCCCTCGTCATCGGGCCCTACTCCGTCCCCTTCCTCCTCCCCGTCCCGACTCCGTCCTCCGGACGTCTGGTCTCCGG
CGAGCTCTACTCCGCGTCTCCCAGCGCCCTCGCCGACCTCGACTTGCTAGAGGTACCCTATCTCCCCTCGTCTCAAG---
----ACACGGCCCCTTTCCGGTTTCAGTAATCTCGACCCGACTCGAGGCAGGGCACTCACCTCGGCGTCTACGAGCGCCG
GCGGATCACCGTCGTGGTTGACGGGGCAATCAAAGAGGTGGAGGCGCAGGCTTACTTTGCGAACGCGAGCTACGCGGAGG
CCCTGTGGCTGCGCTGCGGCGGCGAGGCGGCCGAGATCGCGGAGTACACCATGGAGCACGCGGGCAGGTACGTCCCGCCC
AGTGGCCGCTCTCCCGGCGTCTCCGGGCTCATGGATGCCGTCCGTGCCTTCCTCGCCACTGCTCCGCCAGAAAATTGA--
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>chr5B_1_TraesCS5B01G209700
GAGGTATTTTGAACTTCTACAGGATGGACCAATAACTGTTATAAGGAGCATGGATTGAAAATACAATATTCAG--AAATA
CTTTGAGAAGACCTTACCAGTTCTTCTTCA---TCGTCATCGTCATCATCATCATCA------CGGAGATGCTTAGCAGG
TGGTTTAGGTGCCACGGCCACTATAAGGCTATCTACAGAAATCACGATGTAAAGAAACATAAATAAACGTCCACAAGAGA
TATCAAATGCAC-AAATAAGAACTTGGCGATACAGCCATTTA--------------------------------------
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----------------------------------------------TAACTGTCCTAATGGGAAATTT-CTGGCACATAA
GACGTATGCATGTGATTCCAAAAGTGGATGAACATCACCAACAATAGTGGAAAGTATGAAATAAAATGTCCTAGGAACAA
CAACACAAGCTATGAAGAACGATGCGAGCTTTGCGTCTAGCATGACAATCAG---GACGGGACGGAGGAGGGTATGTGTT
GCTGGTTAGTTTACCCCCGTCGCGGAGGTTGACATGGGTGTCGTCTCCCCACGGTAGAGTCGTCCCCCGGAGGACCAGGC
GGAGGCGGTCTTCTGGGAGACGCCGGTCGAGAGCAACGGTGCGGCGCAGATCGGCAACCTACAACGAGACCGATCCCCAA
TTAATTAGGGTGGAGCAAGGCAAGAAGAAGGAGAGTGCTCTGGGGGCGTTACCGACCGAGATGAGCGGGGGGAGGCGGAT
GGTAGTGGGCCGGGACGGACCGACGGCGCGCAGCTTCACCTCGAC---CGTCTCCAGCTCGTCGCCCGCCGCGGCGGCCA
TGGTCTTCTCGTGCTCTATTCGGTTCCTCTTTGCGGTTTTTCCC---------------------------CTCTCTCTC
TCTGTCTCTCTCTTCCCCGTCTTGGATGGCCCAACGGCAGAGGCCCAAACAGGCTATCTACCTACAGTTCGG---CACGT
TATCTTTCGAGCCCATTCTGGTTTTTCCGTGTTGTTACGGAAGTGCTGCGCGAGAGCCGATTGGCCGAGGAACAGAGGGG
CTCCGAGGCAATAATGGAGGCGGCGTCGGCG---------------GCGACGGCGACGATGGTGTTCGTGTACGGCACCC
TGAAGCGCGGGTTTCCCAACCACCCCCGCCTCGCCGCCTTCGACTGCCCCTTCGCCGGCGCGGCCTCCACCGCCGCCCCA
GCCTCCCTCGTCATCGGGCCCTACTCCGTCCCCTTCCTCCTCCCCGTCCCGACTCCGTCCTCCGGACGTCTGGTCTCCGG
CGAGCTCTACTCCGCGTCTCCCAGCGCCCTCGCCGACCTCGACTTGCTAGAGGTACCCTATCTCCCCTCGTCTCAAG---
----ACACGGCCCCTTTCCGGTTTCAGTAATCTCGACCCGACTCGAGGCAGGGCACTCACCTCGGCGTCTACGAGCGCCG
GCGGATCACCGTCGTGGTTGACGGGGCAATCAAAGAGGTGGAGGCGCAGGCTTACTTTGCGAACGCGAGCTACGCGGAGG
CCCTGTGGCTGCGCTGCGGCGGCGAGGCGGCCGAGATCGCGGAGTACACCATGGAGCACGCGGGCAGGTACGTCCCGCCC
AGTGGCCGCTCTCCCGGCGTCTCCGGGCTCATGGATGCCGTCCGTGCCTTCCTCGCCACTGCTCCGCCAGAAAATTGAAC
TGTTGTCGTCTTTCCTTCCGATTGTTCTCTGAATGAATTGAAGAATAAAATGTGGCGTGGTATCTAGTAGTAGCATCCTG
TGCATACCTATATTTATCCATTACG---TTCATACCGATTTCTGAATTGTGAA----TACTTTTTATTTGGAGAAGTTGC
TGCTTGAGTCAAGATGCTTGGAGAGCATCTACGCATTGAGAATTGTA--AGATGCTGTCAGCTGTTTCTATAGCATGTTT
TTAGTGAGAATGTGGTAAGACTCACCAAACGATAAGGGCCGAACGTCAGGAGCAGCCGCTCGCTAGGCCCCCTCCTCCCC
TGCACCGCCGCCGCCGGAGGGTCGGCCGGCGAAGCCGCGCCGGACCCAGGAACGGGAAGGTGGCGGCGGGGCGGATCTAG
CTCCTCGCCCCTCCTCCCACCCTCACACCCCGTGCCTCACCCCCATGGCAGCTGCCACTTGCTGGCCCGGCGATGTCGGC
TCCGGTCCTCCGATGGCCTGCCCCGCGCACCTCCAGCCAACCTCGCCCCACTATCGTTGGTCGTCCCCAACTTGCCCGTA
AGCCTCGCCCTCTCCGCCCCGCGTCCCCGTGCCCCTGAGATCTCATCTGGTGCCTCTCGATGTCCTTCTCCGGCTGCTGC
ACGGACTTGCCGGCGGCGGATCCGGCGCTCCTGGCCGTTGCCATGGGCGCTCCTGCAGCCTCCCGCTCCGCCCCCCTCGG
TGGCGCGACCCAGCCCCGTTGGTTCTGCTGCTGGCCGTTGTTACTTCTTGAGCTTGCGTTGATTTTTTTCCTTGAAGAGA
AAATGGTGATGTAGCAAAGTAGAGATAAATATTTCCCTCAGTTAGAGAACCAAGGTACTACCTTCGTCTAGGTGAATAAG
TCATTCGCGCAATGCTAGGTCATCGATTTGAGGAACTAAAAATGTGTTATATGTCATGAAAAGTATATCACTAGATTTCT
ACGCGGATGTAGTTTCTAAATATATATTTTTTGTCACATATAATACA
>chr5D_1
GAGGTATTTTGAATTTCTACAGGATGGACCATTAACTGTCATATGGAGCATGGATTGAAAATACAATATTCATCTAAATA
TTTTGAGAAGACCTTACCAGTTCCTCTTCATCCTCGTCGTCGTCATCATCATCATCATCATCTCGGAGATGCTTAGCAGG
TGGTTTAGGTGCCACGGCCACCATAAGGCTATCTACAGAAATCACAATGTAAT-AAACATAAATAAACGTCCACAAGAGA
TATTAAGTGCACCAAGTAAGAACTTGGTGAAACAGCCATTTGCCCACTTAATAGATGGTCCAAATGTAAAAGTAACTTTT
GGACCATCTGAGGTAAAAAACGCAGCTCCAACAGACGGTCCATATGTAAAAAAAATTGGACCGCGGCCTCCTCGTGATGT
AAAATACAACACCTCACGGTGCAAATTTACATCACGAGGTGCATCTGGTCCAAAACCAGCTGCCGCCCGCGAACGCCCAA
CCGCCAGTTCCTTTCCTTTCCCGCCCGCCCGCCCGCGACCTCCCACCCGTCCGCCGCCGCCCCGCCGCCTCCACACCCCG
CCTAAGATTAGCACCCCGCCGCCCGCCGCCCGCATCAGATCCTGCCCCGCCCCGCCCCCCGCTGCTGTTTCCACGCCGCC
ACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCCGCCACCGCCCCTCAGCTCCGC
CCCGCCCGGCTCCATCCGCCACCGCCCCGGCCGCACGCCACCGCCGCTCCACCGCTCTCCGATGGCGCCGAAGAAGACGC
CGAAGGGCAAGTCGGGCTTCTTCGGCGTGAGGCAGAAGCCCTCCGGTAATTTCGGAGTGGAGTTCTCCGACGCCGGGAGG
CGTTGGTGGATCGGCACGTACCCCTCCGCCCACGAGGCCGCGCGTGCCTACGATGTGGCGGCGTGGCGTGCCGAGAGGCC
TCGGGAGCACCTCAACTTCCCAGAGATCGAGAGTCGGGCGGAAGCGGAGATGCTTGTGCCGTAGGGCATCAAGATGAAGG
AGATCCCGACGAAGAAGAAGACGACGAAGAAGCCGTCGGTTGTCGTCAGTGCCGACGAGACCGACGAGGAGGCGATGGCG
AGGTTTGCTCGGGAGCATCCGGAGTACGTCCAGGCCGAGCTGGAGTACTACTGGAAGCGTGAGGCGGAGCAGAAGAAGAA
GGGGGCGAAGAAGGAGGACGAGGCCGGTCCCTCGACGGTGATCCCCATCGAGTCCTCTTCCGAGGAGGACCGGGCAGACT
TCTCGGAGGAGGAGGAGGAGGGGTGCGACGACCCGGAGAAGGAGGAGTTCTGGGCGCAGTTCCGCAGCTCCGACGATGAG
GAGTAGTTTATCTAGTAGTTTGAATAAGTAGTAGTTGAAGTTCATGTATGAAACTATGTTGAATTTGATGTTTGAACTAT
GTTGAATGGACTAGTAGTTTGTCGTTTTAAGAAATTTACATCTTCATTTTGGACCATCTATTGGAGTTGCTCTTTTGGAC
CATCAATTTGGACCATCTGTTGGAGTTGAGCTTTTTTCGGAGCTCCAAAACACACTTTTTGGCGGTCCAAATTTTACATC
TCCAGTTTTGGACCGCCAAATTTTGGACCATCTATTGGAGATGCTCTAACTGTCCTAATGGGAAATTT-CATGCACATAA
GATGTATGTATGTGATTCCAAAAGCGGATGAACATCACCAACAATCGTGGAAAGTATGAAATAG----TCCTAGGGACAA
CAACACAAGCTATGGAGAACGATGCGAGCTTTGCATCTAGCATGACAATCAG---GACGGGACAGAGGAGGGTATGTGTG
GCTGGTTAGTTTACCCCCGTCGCGGAGTTTGACATGGGTGTCGTCTCCCCACGGGAGAGTCGTCCCCCGGAGGACCAGGC
GGAGGCGGTCTTCTGGGAGACGCCGGTCGAGAGCGACGCTGCGGCGCAGATCGGCAACCTACAACGAGACCGATCCCCAA
TTAATTAGGGCGGAGCAAGGCAAGAAGGAGGAGGGTGCTCCGGGGGCGTTACCGACCGAGATAAGCGGGGGGAGGCGGAT
GTTGGTGGGCCTGGACGGACCGACGGCGCGCAGCTTCACCTCTACCGTCGTCTCCGGCTCGTCGCCCGCCGCAGCGGCCA
TGGTCTTCTCGTGCTCTATTCGGTTCCTCTTTGCGGTTTTTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTGTCTCTTGCCCGTCTTGGATGACCCAACGGCAGAGGCCCAAACAGGCTATCTACACTTACAGTTGGGCCACGT
TATTTTTCGAGCCCCTTCTGGTTTT-CCGTGTTGTTACGGAAGTGCTGCGCGAGAGCCGATTGGCCGACGGACAGAGGGG
CTCCGAGGCAATAATGGAGGCGGCGTCGGCGGCGTCGGCGGCGACGGCGACGGCGACGATGGTGTTCGTGTACGGCACCC
TGAAGCGCGGGTTTCCCAACTACCCCCGCCTCGCCGCCTTCGACTGCCCCTTCGCCGGCGCGGCCACCACCGCCGCCCCA
GCCTCCCTCGTCATCGGGCCCTACTCCGTCCCCTTCCTCCTCCCCACCCCGACTCCGTCCTCCGGGCGTCTGGTCTCCGG
CGAGCTCTACTCCGCGTCGCCCAGCGCCCTCGCCGACCTCGACTTGCTAGAGGTACCCTATCTCCCCCGGTCTCAAG---
----ACACGGCTCCTTTCCGGTTTCAGTAATCTCGACCCGAC----GGCAGGGCACTCACCTCGGCGTCTACGAGCGCCG
GCGGATCACCGTCGTGGTTGACGGGGCGAGCAAAGAGGTGGAGGCACAGGCTTACTTTGCGAACGCGAGCTACGCGGAGT
TCCTGTGGCTGCGCTGCGGCGGCGAGGCGGCCGAGATCGCGGAGTACACCATGGAGCACGCGGGCAGGTACGTCCCGCCC
AGTGGCCGCTCTCCCGGCGTCTCCGGGCTCATGGATGCCGTCCGTGCCTTCCTCGCCACTGCTCCGCCAGAAAATTGAAC
TGTTGTCGTCTTTCCTTCCGATTGTTCTCTGAATGAATTGAAGAATAAAATGTGGCGTGGTACCTAC----AGCATCCAG
TGCACACCTATAT-------------------------------------------------------------------
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>chr5A_1
GAGGTATCTTGAACTTCTACAGGATGGACCAATAACTGTTATAAGGAGCATGGATTAAACATACAATATTCAG--AAATA
CTTTGAGGAGACCTTACCAGTTCTTCTTCA---TCGTCATCGTCATCATCATCATCATCACCGCGGAGATGCTTAGCAGG
TGGTTTAGGTGCCACGGCAACTATAAGACTATCTACAGAAATCACGATGTAAAGAAACATAAATAAACGTCCACAAGATA
TATCAAGTGCG-CAAATAAGAACTTGGTGAAACAGCCATTTAG-------------------------------------
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-------------------------------------------------CTGTCCTAATGGGAAATTTTCTTGCACATAA
G----ATGTATGTGATTCCAAAAGTGGATGAACATCACGAACAATCACGGAAAGTATGAAATAGAATGTCCTAGGAACAA
CAACACAGGCTATGAAGAACGATGCGAGCTTTGCATCTAGCATGACAACTAATAAGACGGGAGAGAGGAGGGTATGTGTG
GCTGGTTAGTTTACCCCCGTCGCGGAGCTTGACATGGGTGTCGTCTCCCCACGGGAGAGTCGTCCCCCGGAGGACCAGGC
GGAGGCGGTCTTCTGGGAGACGCCGGTCGAGAGCGACGCTGCGGCGCAGATCGGCAACCTACAACGAGACCGATCCCCAA
TTAATCACGGCGGAGCGAGGCAAGAAGAGGGGGTTGTTCT-GGAGGTGTTACGGACCGAGATGAGCGGGGGGAGGCGGAT
GGTGGTGGGCCTGGACGGACCGACGGCGCGCAGCTTCACCTCTACCGTCGTCTCCGGCTCGTCGCCCGCCGCAGCGGCCA
TGGTCTTCTCGTGCTCTATTCGGTTCCTCTTTGCGGTTTTTCCC---------------------------C-------C
TCTCTCTGTCTCTTCCTCGTCTTGGGTGGCCCAACGGCAGAGGCCCAAACAGGCTATCTAC----------GGGCCACGT
TATTTTTCGAGCCCCTTCTGGTTTTTCC----------------------------------------------------
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>chr5A_923
TTCGGT--------------------------------------------------------------------------
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---------------------TTTT-CCGAGTTGTTACGGAAGTGCTGCGCGAGAGCCGACTGGCCGGGGAACAGAAGGG
CTCCGAGGCAATAATGGAGGCGGCGTCGGCG---------------GAGACGGCGACGATGGTGTTCGTGTACGGCACCC
TGAAGCGCGGGTTTCCCAATCACCCCCGCCTGGCCGCCTTCGACTGCCCCTTCGCCGGCGCGGCCACCACCGCCGCCCCA
GCCTCCCTCGTCATCGGGCCCTACTCCGTTCCCTTCCTCCTACCTGCCCCGACTCCGTCCTCCGGCCGTCTGGTCTCCGG
CGAGCTCTACTCCGCGTCTCCCAGCGCCCTCGCCGACCTCGACTTGCTAGAGGTACCCTATCCCCCCTCGTCTCAATATT
CAATACACGACTCCTTTCCGGTTTCAGTAATCTCGACCCGACT-GAGGCAGGGCACTCACCTCGGCGTCTACGAGCGCCG
GCGGATCACCGTCGTGGTTGACGGGACGAGCAAAGAGGTGGAGGCAGAGGCTTACTTTGCGAACGCGAGCTACGCGGAGG
CCCTGTGGCTGCGCTGCGGCGGCGAGGCGGCCGAGATCGCGGAGTACACCATGGAGCACGCGGGCAGGTACGTCCCGCCC
AGTGGCCGCTCTCCCGGCGTCTCCGGGCTCATGGATGCCGTCCGTGCCTTCCTCGCCACTGCTCCGCCAGAAAATTGAAC
TGTTGTCCTCTTTCCTTCCGATCATTCTCTGAATGAATTGAAGAATAAAATGCTCC-------------GTAGCATCCAG
TACACACCTATATTTATCCATTACTACATTCATACCGATTTCTTAATTGTGAATACGTACTTTTTATTTGGAGAAGTTGC
TGCTTGAGTAAAGATGCTTGGAGAGCATCTACGCATTGAGATTTGTATAAGATGCCGTCAACTGTTTCTATAGCATGTTT
TTAGTCCGAATGTGATAAGACTTCCGAAACGATAAGGGCCAAACGTAAGAGCA---------------------------
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>SNPs
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------S--------------------S--S-------------------------------------------------
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-----------------------------------------------------------------------S--------
--S-----S------------------------------------S-----------------S----------------
----------------------------------S----------------------------S---------------S
---------------------------S--------------------------S-------------------------
----------------------------------S---S-----------------------------------------
----------S----------------------S------S---------------------------------------
---S-------S------------------------------S------------S----------------S-------
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---S---S-----------------------------------------------------SSSS-SSSSS---------
---S----------S-----------------------------------------------------------------
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----------------------------------------------S------------------S--------------
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-----------S-------------------------------S------------------------------------
---------------------------S-S---------------S----------------------------------
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--------------------------------------------------------------S---SSS---------S-
----S-------------------S------------------S------------------------------------
---------S-------------------------------S-------------S----S-------------------
-----SS-------S-------SS-S--------------S-----S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_2400
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------------------------------------------------------------GACGGAGGAGGGTATGTGTT
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>reverse_4188
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---------------------------CGTGCCCCTGAGATCTCATC---------------------------------
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