Multiple sequence alignment - TraesCS5B01G206100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G206100 chr5B 100.000 3093 0 0 1 3093 375458288 375455196 0.000000e+00 5712
1 TraesCS5B01G206100 chr5D 89.621 1792 76 27 571 2328 323853517 323851802 0.000000e+00 2178
2 TraesCS5B01G206100 chr5D 82.117 274 34 8 269 528 323863502 323863230 1.440000e-53 220
3 TraesCS5B01G206100 chr5A 90.130 1611 91 41 571 2150 420240156 420238583 0.000000e+00 2032
4 TraesCS5B01G206100 chr5A 95.918 245 9 1 2353 2596 42269199 42268955 2.240000e-106 396
5 TraesCS5B01G206100 chr5A 87.624 202 17 5 2126 2326 420238579 420238385 8.630000e-56 228
6 TraesCS5B01G206100 chr2B 98.789 743 8 1 2351 3093 530047587 530046846 0.000000e+00 1321
7 TraesCS5B01G206100 chr2B 89.173 508 38 9 2588 3091 110769528 110769034 4.380000e-173 617
8 TraesCS5B01G206100 chr2B 95.652 253 10 1 2345 2596 368970215 368969963 3.710000e-109 405
9 TraesCS5B01G206100 chr3B 98.116 743 14 0 2351 3093 16963429 16962687 0.000000e+00 1295
10 TraesCS5B01G206100 chr3B 94.531 256 11 3 2342 2596 10684766 10685019 2.890000e-105 392
11 TraesCS5B01G206100 chr1A 90.766 509 38 7 2588 3091 574825902 574825398 0.000000e+00 671
12 TraesCS5B01G206100 chr7A 90.196 510 41 6 2588 3091 120742431 120742937 0.000000e+00 656
13 TraesCS5B01G206100 chr6B 90.177 509 41 7 2588 3091 45523148 45523652 0.000000e+00 654
14 TraesCS5B01G206100 chr3A 88.280 529 33 7 2588 3093 724480897 724481419 9.490000e-170 606
15 TraesCS5B01G206100 chr3A 90.024 411 31 5 2588 2996 657304885 657305287 9.830000e-145 523
16 TraesCS5B01G206100 chr1B 89.538 411 33 5 2588 2996 44073866 44073464 2.130000e-141 512
17 TraesCS5B01G206100 chr4B 97.039 304 6 3 2792 3093 563759526 563759828 2.750000e-140 508
18 TraesCS5B01G206100 chr4B 81.566 613 67 22 2353 2950 563710980 563711561 6.040000e-127 464
19 TraesCS5B01G206100 chr4B 81.209 612 71 21 2353 2950 563759150 563759731 1.310000e-123 453
20 TraesCS5B01G206100 chrUn 95.918 245 9 1 2353 2596 255359885 255360129 2.240000e-106 396
21 TraesCS5B01G206100 chr2A 95.565 248 9 1 2351 2596 93901422 93901175 2.240000e-106 396


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G206100 chr5B 375455196 375458288 3092 True 5712.0 5712 100.000 1 3093 1 chr5B.!!$R1 3092
1 TraesCS5B01G206100 chr5D 323851802 323853517 1715 True 2178.0 2178 89.621 571 2328 1 chr5D.!!$R1 1757
2 TraesCS5B01G206100 chr5A 420238385 420240156 1771 True 1130.0 2032 88.877 571 2326 2 chr5A.!!$R2 1755
3 TraesCS5B01G206100 chr2B 530046846 530047587 741 True 1321.0 1321 98.789 2351 3093 1 chr2B.!!$R3 742
4 TraesCS5B01G206100 chr3B 16962687 16963429 742 True 1295.0 1295 98.116 2351 3093 1 chr3B.!!$R1 742
5 TraesCS5B01G206100 chr1A 574825398 574825902 504 True 671.0 671 90.766 2588 3091 1 chr1A.!!$R1 503
6 TraesCS5B01G206100 chr7A 120742431 120742937 506 False 656.0 656 90.196 2588 3091 1 chr7A.!!$F1 503
7 TraesCS5B01G206100 chr6B 45523148 45523652 504 False 654.0 654 90.177 2588 3091 1 chr6B.!!$F1 503
8 TraesCS5B01G206100 chr3A 724480897 724481419 522 False 606.0 606 88.280 2588 3093 1 chr3A.!!$F2 505
9 TraesCS5B01G206100 chr4B 563759150 563759828 678 False 480.5 508 89.124 2353 3093 2 chr4B.!!$F2 740
10 TraesCS5B01G206100 chr4B 563710980 563711561 581 False 464.0 464 81.566 2353 2950 1 chr4B.!!$F1 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
573 574 0.035630 GCTGGATGACTTGACTGCCT 60.036 55.0 0.0 0.0 0.0 4.75 F
1607 1671 1.429463 GCGAGAAGGCGAAGAAGAAA 58.571 50.0 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1705 1769 0.322008 GGTGAACAGAGCCTTGAGGG 60.322 60.0 0.0 0.0 35.18 4.30 R
3035 3188 2.360483 TGAGATCCTCTGTCATCGAAGC 59.640 50.0 0.0 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 8.139521 AGTTTTTAGTTTCTGACTAGTTTCGG 57.860 34.615 0.00 0.00 41.68 4.30
94 95 7.983484 AGTTTTTAGTTTCTGACTAGTTTCGGA 59.017 33.333 0.00 0.00 41.68 4.55
95 96 7.704789 TTTTAGTTTCTGACTAGTTTCGGAC 57.295 36.000 0.00 0.00 41.68 4.79
96 97 4.254402 AGTTTCTGACTAGTTTCGGACC 57.746 45.455 0.00 0.00 36.65 4.46
97 98 2.985139 GTTTCTGACTAGTTTCGGACCG 59.015 50.000 7.84 7.84 30.21 4.79
98 99 1.171308 TCTGACTAGTTTCGGACCGG 58.829 55.000 15.25 0.00 0.00 5.28
99 100 1.171308 CTGACTAGTTTCGGACCGGA 58.829 55.000 15.25 0.77 0.00 5.14
100 101 1.542915 CTGACTAGTTTCGGACCGGAA 59.457 52.381 15.25 9.27 0.00 4.30
101 102 2.165845 CTGACTAGTTTCGGACCGGAAT 59.834 50.000 11.64 3.63 0.00 3.01
102 103 2.564062 TGACTAGTTTCGGACCGGAATT 59.436 45.455 11.64 9.74 0.00 2.17
103 104 2.928116 GACTAGTTTCGGACCGGAATTG 59.072 50.000 11.64 7.02 0.00 2.32
104 105 2.301009 ACTAGTTTCGGACCGGAATTGT 59.699 45.455 11.64 7.65 0.00 2.71
105 106 2.265589 AGTTTCGGACCGGAATTGTT 57.734 45.000 11.64 0.00 0.00 2.83
106 107 2.578786 AGTTTCGGACCGGAATTGTTT 58.421 42.857 11.64 0.00 0.00 2.83
107 108 2.292292 AGTTTCGGACCGGAATTGTTTG 59.708 45.455 11.64 0.00 0.00 2.93
108 109 1.970092 TTCGGACCGGAATTGTTTGT 58.030 45.000 15.25 0.00 0.00 2.83
109 110 1.231221 TCGGACCGGAATTGTTTGTG 58.769 50.000 15.25 0.00 0.00 3.33
110 111 1.202663 TCGGACCGGAATTGTTTGTGA 60.203 47.619 15.25 0.00 0.00 3.58
111 112 1.604755 CGGACCGGAATTGTTTGTGAA 59.395 47.619 9.46 0.00 0.00 3.18
112 113 2.033550 CGGACCGGAATTGTTTGTGAAA 59.966 45.455 9.46 0.00 0.00 2.69
113 114 3.305064 CGGACCGGAATTGTTTGTGAAAT 60.305 43.478 9.46 0.00 0.00 2.17
114 115 3.987220 GGACCGGAATTGTTTGTGAAATG 59.013 43.478 9.46 0.00 0.00 2.32
115 116 4.261825 GGACCGGAATTGTTTGTGAAATGA 60.262 41.667 9.46 0.00 0.00 2.57
116 117 5.467035 ACCGGAATTGTTTGTGAAATGAT 57.533 34.783 9.46 0.00 0.00 2.45
117 118 5.229423 ACCGGAATTGTTTGTGAAATGATG 58.771 37.500 9.46 0.00 0.00 3.07
118 119 5.010516 ACCGGAATTGTTTGTGAAATGATGA 59.989 36.000 9.46 0.00 0.00 2.92
119 120 5.925397 CCGGAATTGTTTGTGAAATGATGAA 59.075 36.000 0.00 0.00 0.00 2.57
120 121 6.423302 CCGGAATTGTTTGTGAAATGATGAAA 59.577 34.615 0.00 0.00 0.00 2.69
121 122 7.042187 CCGGAATTGTTTGTGAAATGATGAAAA 60.042 33.333 0.00 0.00 0.00 2.29
122 123 8.497554 CGGAATTGTTTGTGAAATGATGAAAAT 58.502 29.630 0.00 0.00 0.00 1.82
150 151 9.734620 TTATTGAATGAACAAACAAAGTCTCTG 57.265 29.630 0.00 0.00 33.44 3.35
151 152 7.389803 TTGAATGAACAAACAAAGTCTCTGA 57.610 32.000 0.00 0.00 0.00 3.27
152 153 7.389803 TGAATGAACAAACAAAGTCTCTGAA 57.610 32.000 0.00 0.00 0.00 3.02
153 154 7.825681 TGAATGAACAAACAAAGTCTCTGAAA 58.174 30.769 0.00 0.00 0.00 2.69
154 155 8.303156 TGAATGAACAAACAAAGTCTCTGAAAA 58.697 29.630 0.00 0.00 0.00 2.29
155 156 9.139174 GAATGAACAAACAAAGTCTCTGAAAAA 57.861 29.630 0.00 0.00 0.00 1.94
156 157 8.693542 ATGAACAAACAAAGTCTCTGAAAAAG 57.306 30.769 0.00 0.00 0.00 2.27
157 158 7.657336 TGAACAAACAAAGTCTCTGAAAAAGT 58.343 30.769 0.00 0.00 0.00 2.66
158 159 8.141268 TGAACAAACAAAGTCTCTGAAAAAGTT 58.859 29.630 0.00 0.00 0.00 2.66
159 160 9.620660 GAACAAACAAAGTCTCTGAAAAAGTTA 57.379 29.630 0.00 0.00 0.00 2.24
160 161 9.974980 AACAAACAAAGTCTCTGAAAAAGTTAA 57.025 25.926 0.00 0.00 0.00 2.01
161 162 9.626045 ACAAACAAAGTCTCTGAAAAAGTTAAG 57.374 29.630 0.00 0.00 0.00 1.85
162 163 9.840427 CAAACAAAGTCTCTGAAAAAGTTAAGA 57.160 29.630 0.00 0.00 0.00 2.10
194 195 9.530633 ACATAGCCGTTACTAAATTTAAGAGAG 57.469 33.333 0.00 0.00 0.00 3.20
195 196 9.745880 CATAGCCGTTACTAAATTTAAGAGAGA 57.254 33.333 0.00 0.00 0.00 3.10
197 198 8.705048 AGCCGTTACTAAATTTAAGAGAGAAG 57.295 34.615 0.00 0.00 0.00 2.85
198 199 7.278203 AGCCGTTACTAAATTTAAGAGAGAAGC 59.722 37.037 0.00 0.00 0.00 3.86
199 200 7.064253 GCCGTTACTAAATTTAAGAGAGAAGCA 59.936 37.037 0.00 0.00 0.00 3.91
200 201 9.099454 CCGTTACTAAATTTAAGAGAGAAGCAT 57.901 33.333 0.00 0.00 0.00 3.79
229 230 9.295825 TCAAATTTTATGACACATGTACTTCCT 57.704 29.630 0.00 0.00 0.00 3.36
230 231 9.345517 CAAATTTTATGACACATGTACTTCCTG 57.654 33.333 0.00 0.00 0.00 3.86
231 232 8.862325 AATTTTATGACACATGTACTTCCTGA 57.138 30.769 0.00 0.00 0.00 3.86
232 233 8.862325 ATTTTATGACACATGTACTTCCTGAA 57.138 30.769 0.00 0.00 0.00 3.02
233 234 8.684386 TTTTATGACACATGTACTTCCTGAAA 57.316 30.769 0.00 0.00 0.00 2.69
234 235 8.862325 TTTATGACACATGTACTTCCTGAAAT 57.138 30.769 0.00 0.00 0.00 2.17
235 236 8.862325 TTATGACACATGTACTTCCTGAAATT 57.138 30.769 0.00 0.00 0.00 1.82
236 237 7.765695 ATGACACATGTACTTCCTGAAATTT 57.234 32.000 0.00 0.00 0.00 1.82
237 238 7.581213 TGACACATGTACTTCCTGAAATTTT 57.419 32.000 0.00 0.00 0.00 1.82
238 239 7.424803 TGACACATGTACTTCCTGAAATTTTG 58.575 34.615 0.00 0.00 0.00 2.44
239 240 7.284261 TGACACATGTACTTCCTGAAATTTTGA 59.716 33.333 0.00 0.00 0.00 2.69
240 241 8.006298 ACACATGTACTTCCTGAAATTTTGAA 57.994 30.769 0.00 0.00 0.00 2.69
241 242 8.474025 ACACATGTACTTCCTGAAATTTTGAAA 58.526 29.630 0.00 0.00 0.00 2.69
242 243 9.480053 CACATGTACTTCCTGAAATTTTGAAAT 57.520 29.630 0.00 0.00 0.00 2.17
243 244 9.696917 ACATGTACTTCCTGAAATTTTGAAATC 57.303 29.630 0.00 0.00 0.00 2.17
244 245 9.695526 CATGTACTTCCTGAAATTTTGAAATCA 57.304 29.630 0.00 0.00 0.00 2.57
335 336 6.975196 TTTTTGGATCTCACCAGAATTCAA 57.025 33.333 8.44 0.00 41.19 2.69
336 337 7.543359 TTTTTGGATCTCACCAGAATTCAAT 57.457 32.000 8.44 0.00 41.19 2.57
337 338 7.543359 TTTTGGATCTCACCAGAATTCAATT 57.457 32.000 8.44 0.00 41.19 2.32
338 339 8.648698 TTTTGGATCTCACCAGAATTCAATTA 57.351 30.769 8.44 0.00 41.19 1.40
339 340 7.630242 TTGGATCTCACCAGAATTCAATTAC 57.370 36.000 8.44 0.00 41.19 1.89
340 341 6.720309 TGGATCTCACCAGAATTCAATTACA 58.280 36.000 8.44 0.00 34.77 2.41
341 342 7.174413 TGGATCTCACCAGAATTCAATTACAA 58.826 34.615 8.44 0.00 34.77 2.41
342 343 7.669304 TGGATCTCACCAGAATTCAATTACAAA 59.331 33.333 8.44 0.00 34.77 2.83
343 344 8.186821 GGATCTCACCAGAATTCAATTACAAAG 58.813 37.037 8.44 0.00 30.24 2.77
344 345 8.641498 ATCTCACCAGAATTCAATTACAAAGT 57.359 30.769 8.44 0.00 30.24 2.66
345 346 7.874940 TCTCACCAGAATTCAATTACAAAGTG 58.125 34.615 8.44 2.14 0.00 3.16
346 347 7.502226 TCTCACCAGAATTCAATTACAAAGTGT 59.498 33.333 8.44 0.00 0.00 3.55
347 348 7.424803 TCACCAGAATTCAATTACAAAGTGTG 58.575 34.615 8.44 0.00 0.00 3.82
348 349 6.642131 CACCAGAATTCAATTACAAAGTGTGG 59.358 38.462 8.44 4.24 39.13 4.17
349 350 6.158598 CCAGAATTCAATTACAAAGTGTGGG 58.841 40.000 8.44 0.00 32.21 4.61
350 351 6.158598 CAGAATTCAATTACAAAGTGTGGGG 58.841 40.000 8.44 0.00 0.00 4.96
351 352 5.245977 AGAATTCAATTACAAAGTGTGGGGG 59.754 40.000 8.44 0.00 0.00 5.40
352 353 3.885976 TCAATTACAAAGTGTGGGGGA 57.114 42.857 0.00 0.00 0.00 4.81
353 354 4.186077 TCAATTACAAAGTGTGGGGGAA 57.814 40.909 0.00 0.00 0.00 3.97
354 355 4.547671 TCAATTACAAAGTGTGGGGGAAA 58.452 39.130 0.00 0.00 0.00 3.13
355 356 5.151454 TCAATTACAAAGTGTGGGGGAAAT 58.849 37.500 0.00 0.00 0.00 2.17
356 357 5.604650 TCAATTACAAAGTGTGGGGGAAATT 59.395 36.000 0.00 0.00 0.00 1.82
357 358 6.100424 TCAATTACAAAGTGTGGGGGAAATTT 59.900 34.615 0.00 0.00 0.00 1.82
358 359 3.836365 ACAAAGTGTGGGGGAAATTTG 57.164 42.857 0.00 0.00 34.61 2.32
359 360 2.437651 ACAAAGTGTGGGGGAAATTTGG 59.562 45.455 0.00 0.00 33.14 3.28
360 361 2.703007 CAAAGTGTGGGGGAAATTTGGA 59.297 45.455 0.00 0.00 0.00 3.53
361 362 3.274281 AAGTGTGGGGGAAATTTGGAT 57.726 42.857 0.00 0.00 0.00 3.41
362 363 2.539302 AGTGTGGGGGAAATTTGGATG 58.461 47.619 0.00 0.00 0.00 3.51
363 364 1.066215 GTGTGGGGGAAATTTGGATGC 60.066 52.381 0.00 0.00 0.00 3.91
364 365 1.274712 GTGGGGGAAATTTGGATGCA 58.725 50.000 0.00 0.00 0.00 3.96
365 366 1.839354 GTGGGGGAAATTTGGATGCAT 59.161 47.619 0.00 0.00 0.00 3.96
366 367 3.037549 GTGGGGGAAATTTGGATGCATA 58.962 45.455 0.00 0.00 0.00 3.14
367 368 3.070015 GTGGGGGAAATTTGGATGCATAG 59.930 47.826 0.00 0.00 0.00 2.23
368 369 3.308401 GGGGGAAATTTGGATGCATAGT 58.692 45.455 0.00 0.00 0.00 2.12
369 370 3.070015 GGGGGAAATTTGGATGCATAGTG 59.930 47.826 0.00 0.00 0.00 2.74
370 371 3.960102 GGGGAAATTTGGATGCATAGTGA 59.040 43.478 0.00 0.00 0.00 3.41
371 372 4.590222 GGGGAAATTTGGATGCATAGTGAT 59.410 41.667 0.00 0.00 0.00 3.06
372 373 5.774690 GGGGAAATTTGGATGCATAGTGATA 59.225 40.000 0.00 0.00 0.00 2.15
373 374 6.294731 GGGGAAATTTGGATGCATAGTGATAC 60.295 42.308 0.00 0.00 0.00 2.24
374 375 6.265196 GGGAAATTTGGATGCATAGTGATACA 59.735 38.462 0.00 0.00 0.00 2.29
375 376 7.365741 GGAAATTTGGATGCATAGTGATACAG 58.634 38.462 0.00 0.00 0.00 2.74
376 377 7.229306 GGAAATTTGGATGCATAGTGATACAGA 59.771 37.037 0.00 0.00 0.00 3.41
377 378 8.523915 AAATTTGGATGCATAGTGATACAGAA 57.476 30.769 0.00 0.00 0.00 3.02
378 379 8.523915 AATTTGGATGCATAGTGATACAGAAA 57.476 30.769 0.00 0.00 0.00 2.52
379 380 7.936496 TTTGGATGCATAGTGATACAGAAAA 57.064 32.000 0.00 0.00 0.00 2.29
380 381 7.936496 TTGGATGCATAGTGATACAGAAAAA 57.064 32.000 0.00 0.00 0.00 1.94
381 382 7.320443 TGGATGCATAGTGATACAGAAAAAC 57.680 36.000 0.00 0.00 0.00 2.43
382 383 6.883756 TGGATGCATAGTGATACAGAAAAACA 59.116 34.615 0.00 0.00 0.00 2.83
383 384 7.392953 TGGATGCATAGTGATACAGAAAAACAA 59.607 33.333 0.00 0.00 0.00 2.83
384 385 7.698130 GGATGCATAGTGATACAGAAAAACAAC 59.302 37.037 0.00 0.00 0.00 3.32
385 386 7.744087 TGCATAGTGATACAGAAAAACAACT 57.256 32.000 0.00 0.00 0.00 3.16
386 387 7.806690 TGCATAGTGATACAGAAAAACAACTC 58.193 34.615 0.00 0.00 0.00 3.01
387 388 7.661437 TGCATAGTGATACAGAAAAACAACTCT 59.339 33.333 0.00 0.00 0.00 3.24
388 389 8.507249 GCATAGTGATACAGAAAAACAACTCTT 58.493 33.333 0.00 0.00 0.00 2.85
392 393 9.057089 AGTGATACAGAAAAACAACTCTTAAGG 57.943 33.333 1.85 0.00 0.00 2.69
393 394 8.837389 GTGATACAGAAAAACAACTCTTAAGGT 58.163 33.333 1.85 0.00 0.00 3.50
394 395 8.836413 TGATACAGAAAAACAACTCTTAAGGTG 58.164 33.333 1.85 1.70 46.30 4.00
403 404 4.315803 CAACTCTTAAGGTGTACACAGGG 58.684 47.826 26.51 17.27 35.34 4.45
404 405 3.853207 ACTCTTAAGGTGTACACAGGGA 58.147 45.455 26.51 14.85 0.00 4.20
405 406 3.833070 ACTCTTAAGGTGTACACAGGGAG 59.167 47.826 26.51 23.10 0.00 4.30
406 407 3.833070 CTCTTAAGGTGTACACAGGGAGT 59.167 47.826 26.51 7.75 0.00 3.85
419 420 4.013267 ACAGGGAGTGTGAATCTCAAAG 57.987 45.455 0.00 0.00 38.28 2.77
420 421 3.392616 ACAGGGAGTGTGAATCTCAAAGT 59.607 43.478 0.00 0.00 38.28 2.66
421 422 3.750130 CAGGGAGTGTGAATCTCAAAGTG 59.250 47.826 0.00 0.00 34.04 3.16
422 423 2.485814 GGGAGTGTGAATCTCAAAGTGC 59.514 50.000 0.00 0.00 34.04 4.40
423 424 3.141398 GGAGTGTGAATCTCAAAGTGCA 58.859 45.455 0.00 0.00 34.04 4.57
424 425 3.565482 GGAGTGTGAATCTCAAAGTGCAA 59.435 43.478 0.00 0.00 34.04 4.08
425 426 4.217118 GGAGTGTGAATCTCAAAGTGCAAT 59.783 41.667 0.00 0.00 34.04 3.56
426 427 5.117355 AGTGTGAATCTCAAAGTGCAATG 57.883 39.130 0.00 0.00 0.00 2.82
427 428 4.823442 AGTGTGAATCTCAAAGTGCAATGA 59.177 37.500 0.00 0.00 0.00 2.57
428 429 5.300034 AGTGTGAATCTCAAAGTGCAATGAA 59.700 36.000 0.00 0.00 0.00 2.57
429 430 5.400485 GTGTGAATCTCAAAGTGCAATGAAC 59.600 40.000 0.00 0.00 0.00 3.18
430 431 4.614284 GTGAATCTCAAAGTGCAATGAACG 59.386 41.667 0.00 0.00 0.00 3.95
431 432 3.837213 ATCTCAAAGTGCAATGAACGG 57.163 42.857 0.00 0.00 0.00 4.44
432 433 1.266718 TCTCAAAGTGCAATGAACGGC 59.733 47.619 0.00 0.00 0.00 5.68
433 434 1.267806 CTCAAAGTGCAATGAACGGCT 59.732 47.619 0.00 0.00 0.00 5.52
434 435 1.266718 TCAAAGTGCAATGAACGGCTC 59.733 47.619 0.00 0.00 0.00 4.70
435 436 1.267806 CAAAGTGCAATGAACGGCTCT 59.732 47.619 0.00 0.00 35.57 4.09
436 437 2.472695 AAGTGCAATGAACGGCTCTA 57.527 45.000 0.00 0.00 33.87 2.43
437 438 2.472695 AGTGCAATGAACGGCTCTAA 57.527 45.000 0.00 0.00 32.62 2.10
438 439 2.076863 AGTGCAATGAACGGCTCTAAC 58.923 47.619 0.00 0.00 32.62 2.34
439 440 1.804151 GTGCAATGAACGGCTCTAACA 59.196 47.619 0.00 0.00 0.00 2.41
440 441 1.804151 TGCAATGAACGGCTCTAACAC 59.196 47.619 0.00 0.00 0.00 3.32
441 442 1.201921 GCAATGAACGGCTCTAACACG 60.202 52.381 0.00 0.00 0.00 4.49
442 443 2.066262 CAATGAACGGCTCTAACACGT 58.934 47.619 0.00 0.00 43.43 4.49
443 444 1.710013 ATGAACGGCTCTAACACGTG 58.290 50.000 15.48 15.48 41.12 4.49
444 445 0.669619 TGAACGGCTCTAACACGTGA 59.330 50.000 25.01 0.00 41.12 4.35
445 446 1.335597 TGAACGGCTCTAACACGTGAG 60.336 52.381 25.01 10.52 41.12 3.51
446 447 0.956633 AACGGCTCTAACACGTGAGA 59.043 50.000 25.01 14.63 41.12 3.27
447 448 0.956633 ACGGCTCTAACACGTGAGAA 59.043 50.000 25.01 5.80 39.64 2.87
448 449 1.335689 ACGGCTCTAACACGTGAGAAC 60.336 52.381 25.01 10.73 39.64 3.01
449 450 1.335597 CGGCTCTAACACGTGAGAACA 60.336 52.381 25.01 0.55 32.44 3.18
450 451 2.329379 GGCTCTAACACGTGAGAACAG 58.671 52.381 25.01 11.71 32.44 3.16
451 452 2.030185 GGCTCTAACACGTGAGAACAGA 60.030 50.000 25.01 14.37 32.44 3.41
452 453 3.238441 GCTCTAACACGTGAGAACAGAG 58.762 50.000 25.01 22.42 32.44 3.35
453 454 3.304794 GCTCTAACACGTGAGAACAGAGT 60.305 47.826 25.01 0.00 32.81 3.24
454 455 4.793353 GCTCTAACACGTGAGAACAGAGTT 60.793 45.833 25.01 4.96 32.81 3.01
455 456 5.258456 TCTAACACGTGAGAACAGAGTTT 57.742 39.130 25.01 4.16 0.00 2.66
456 457 5.657474 TCTAACACGTGAGAACAGAGTTTT 58.343 37.500 25.01 3.60 0.00 2.43
457 458 6.103997 TCTAACACGTGAGAACAGAGTTTTT 58.896 36.000 25.01 3.38 0.00 1.94
458 459 4.600012 ACACGTGAGAACAGAGTTTTTG 57.400 40.909 25.01 0.00 0.00 2.44
459 460 4.250464 ACACGTGAGAACAGAGTTTTTGA 58.750 39.130 25.01 0.00 0.00 2.69
460 461 4.876107 ACACGTGAGAACAGAGTTTTTGAT 59.124 37.500 25.01 0.00 0.00 2.57
461 462 6.046593 ACACGTGAGAACAGAGTTTTTGATA 58.953 36.000 25.01 0.00 0.00 2.15
462 463 6.018994 ACACGTGAGAACAGAGTTTTTGATAC 60.019 38.462 25.01 0.00 0.00 2.24
463 464 6.019075 CACGTGAGAACAGAGTTTTTGATACA 60.019 38.462 10.90 0.00 0.00 2.29
464 465 6.537301 ACGTGAGAACAGAGTTTTTGATACAA 59.463 34.615 0.00 0.00 0.00 2.41
465 466 6.846283 CGTGAGAACAGAGTTTTTGATACAAC 59.154 38.462 0.00 0.00 0.00 3.32
466 467 7.465379 CGTGAGAACAGAGTTTTTGATACAACA 60.465 37.037 0.00 0.00 0.00 3.33
467 468 8.345565 GTGAGAACAGAGTTTTTGATACAACAT 58.654 33.333 0.00 0.00 0.00 2.71
468 469 8.344831 TGAGAACAGAGTTTTTGATACAACATG 58.655 33.333 0.00 0.00 0.00 3.21
469 470 8.450578 AGAACAGAGTTTTTGATACAACATGA 57.549 30.769 0.00 0.00 0.00 3.07
470 471 9.071276 AGAACAGAGTTTTTGATACAACATGAT 57.929 29.630 0.00 0.00 0.00 2.45
471 472 9.334693 GAACAGAGTTTTTGATACAACATGATC 57.665 33.333 0.00 0.00 0.00 2.92
472 473 7.820648 ACAGAGTTTTTGATACAACATGATCC 58.179 34.615 0.00 0.00 0.00 3.36
473 474 7.094205 ACAGAGTTTTTGATACAACATGATCCC 60.094 37.037 0.00 0.00 0.00 3.85
474 475 7.121759 CAGAGTTTTTGATACAACATGATCCCT 59.878 37.037 0.00 0.00 0.00 4.20
475 476 7.671398 AGAGTTTTTGATACAACATGATCCCTT 59.329 33.333 0.00 0.00 0.00 3.95
476 477 8.193953 AGTTTTTGATACAACATGATCCCTTT 57.806 30.769 0.00 0.00 0.00 3.11
477 478 8.650490 AGTTTTTGATACAACATGATCCCTTTT 58.350 29.630 0.00 0.00 0.00 2.27
478 479 8.711457 GTTTTTGATACAACATGATCCCTTTTG 58.289 33.333 0.00 0.00 0.00 2.44
479 480 5.581126 TGATACAACATGATCCCTTTTGC 57.419 39.130 0.00 0.00 0.00 3.68
480 481 5.263599 TGATACAACATGATCCCTTTTGCT 58.736 37.500 0.00 0.00 0.00 3.91
481 482 5.357878 TGATACAACATGATCCCTTTTGCTC 59.642 40.000 0.00 0.00 0.00 4.26
482 483 3.771216 ACAACATGATCCCTTTTGCTCT 58.229 40.909 0.00 0.00 0.00 4.09
483 484 3.508793 ACAACATGATCCCTTTTGCTCTG 59.491 43.478 0.00 0.00 0.00 3.35
484 485 2.097825 ACATGATCCCTTTTGCTCTGC 58.902 47.619 0.00 0.00 0.00 4.26
485 486 2.291411 ACATGATCCCTTTTGCTCTGCT 60.291 45.455 0.00 0.00 0.00 4.24
486 487 2.592102 TGATCCCTTTTGCTCTGCTT 57.408 45.000 0.00 0.00 0.00 3.91
487 488 2.880443 TGATCCCTTTTGCTCTGCTTT 58.120 42.857 0.00 0.00 0.00 3.51
488 489 3.233507 TGATCCCTTTTGCTCTGCTTTT 58.766 40.909 0.00 0.00 0.00 2.27
489 490 3.642848 TGATCCCTTTTGCTCTGCTTTTT 59.357 39.130 0.00 0.00 0.00 1.94
510 511 7.769272 TTTTTGTTCCTGAAAATAAGCTGTG 57.231 32.000 0.00 0.00 0.00 3.66
511 512 6.463995 TTTGTTCCTGAAAATAAGCTGTGT 57.536 33.333 0.00 0.00 0.00 3.72
512 513 7.575414 TTTGTTCCTGAAAATAAGCTGTGTA 57.425 32.000 0.00 0.00 0.00 2.90
513 514 6.801539 TGTTCCTGAAAATAAGCTGTGTAG 57.198 37.500 0.00 0.00 0.00 2.74
514 515 6.296026 TGTTCCTGAAAATAAGCTGTGTAGT 58.704 36.000 0.00 0.00 0.00 2.73
515 516 7.446769 TGTTCCTGAAAATAAGCTGTGTAGTA 58.553 34.615 0.00 0.00 0.00 1.82
516 517 7.934665 TGTTCCTGAAAATAAGCTGTGTAGTAA 59.065 33.333 0.00 0.00 0.00 2.24
517 518 8.780249 GTTCCTGAAAATAAGCTGTGTAGTAAA 58.220 33.333 0.00 0.00 0.00 2.01
518 519 8.547967 TCCTGAAAATAAGCTGTGTAGTAAAG 57.452 34.615 0.00 0.00 0.00 1.85
519 520 7.606456 TCCTGAAAATAAGCTGTGTAGTAAAGG 59.394 37.037 0.00 0.00 0.00 3.11
520 521 7.606456 CCTGAAAATAAGCTGTGTAGTAAAGGA 59.394 37.037 0.00 0.00 0.00 3.36
521 522 8.911918 TGAAAATAAGCTGTGTAGTAAAGGAA 57.088 30.769 0.00 0.00 0.00 3.36
522 523 8.780249 TGAAAATAAGCTGTGTAGTAAAGGAAC 58.220 33.333 0.00 0.00 0.00 3.62
524 525 7.907214 AATAAGCTGTGTAGTAAAGGAACTG 57.093 36.000 0.00 0.00 40.86 3.16
525 526 4.273148 AGCTGTGTAGTAAAGGAACTGG 57.727 45.455 0.00 0.00 40.86 4.00
526 527 2.742589 GCTGTGTAGTAAAGGAACTGGC 59.257 50.000 0.00 0.00 40.86 4.85
527 528 3.805807 GCTGTGTAGTAAAGGAACTGGCA 60.806 47.826 0.00 0.00 40.86 4.92
528 529 4.579869 CTGTGTAGTAAAGGAACTGGCAT 58.420 43.478 0.00 0.00 40.86 4.40
529 530 4.323417 TGTGTAGTAAAGGAACTGGCATG 58.677 43.478 0.00 0.00 40.86 4.06
530 531 4.041075 TGTGTAGTAAAGGAACTGGCATGA 59.959 41.667 0.00 0.00 40.86 3.07
531 532 4.631813 GTGTAGTAAAGGAACTGGCATGAG 59.368 45.833 0.00 0.00 40.86 2.90
532 533 2.716217 AGTAAAGGAACTGGCATGAGC 58.284 47.619 0.00 0.00 40.86 4.26
533 534 2.040278 AGTAAAGGAACTGGCATGAGCA 59.960 45.455 0.00 0.00 40.21 4.26
534 535 1.999648 AAAGGAACTGGCATGAGCAA 58.000 45.000 0.00 0.00 40.21 3.91
535 536 1.251251 AAGGAACTGGCATGAGCAAC 58.749 50.000 0.00 0.00 40.21 4.17
536 537 0.610232 AGGAACTGGCATGAGCAACC 60.610 55.000 0.00 0.00 44.61 3.77
537 538 0.610232 GGAACTGGCATGAGCAACCT 60.610 55.000 0.00 0.00 44.61 3.50
538 539 0.524862 GAACTGGCATGAGCAACCTG 59.475 55.000 0.00 0.00 44.61 4.00
539 540 0.178981 AACTGGCATGAGCAACCTGT 60.179 50.000 0.00 0.00 44.61 4.00
540 541 0.692476 ACTGGCATGAGCAACCTGTA 59.308 50.000 0.00 0.00 44.61 2.74
541 542 1.283029 ACTGGCATGAGCAACCTGTAT 59.717 47.619 0.00 0.00 44.61 2.29
542 543 2.291153 ACTGGCATGAGCAACCTGTATT 60.291 45.455 0.00 0.00 44.61 1.89
543 544 3.054434 ACTGGCATGAGCAACCTGTATTA 60.054 43.478 0.00 0.00 44.61 0.98
544 545 4.139786 CTGGCATGAGCAACCTGTATTAT 58.860 43.478 0.00 0.00 44.61 1.28
545 546 4.136796 TGGCATGAGCAACCTGTATTATC 58.863 43.478 0.00 0.00 44.61 1.75
546 547 3.187227 GGCATGAGCAACCTGTATTATCG 59.813 47.826 0.00 0.00 44.61 2.92
547 548 4.058124 GCATGAGCAACCTGTATTATCGA 58.942 43.478 0.00 0.00 41.58 3.59
548 549 4.084328 GCATGAGCAACCTGTATTATCGAC 60.084 45.833 0.00 0.00 41.58 4.20
549 550 4.729227 TGAGCAACCTGTATTATCGACA 57.271 40.909 0.00 0.00 0.00 4.35
550 551 4.430007 TGAGCAACCTGTATTATCGACAC 58.570 43.478 0.00 0.00 0.00 3.67
551 552 3.793559 AGCAACCTGTATTATCGACACC 58.206 45.455 0.00 0.00 0.00 4.16
552 553 3.451178 AGCAACCTGTATTATCGACACCT 59.549 43.478 0.00 0.00 0.00 4.00
553 554 4.081087 AGCAACCTGTATTATCGACACCTT 60.081 41.667 0.00 0.00 0.00 3.50
554 555 4.034048 GCAACCTGTATTATCGACACCTTG 59.966 45.833 0.00 0.00 0.00 3.61
555 556 3.793559 ACCTGTATTATCGACACCTTGC 58.206 45.455 0.00 0.00 0.00 4.01
556 557 3.451178 ACCTGTATTATCGACACCTTGCT 59.549 43.478 0.00 0.00 0.00 3.91
557 558 3.804325 CCTGTATTATCGACACCTTGCTG 59.196 47.826 0.00 0.00 0.00 4.41
558 559 3.792401 TGTATTATCGACACCTTGCTGG 58.208 45.455 0.00 0.00 42.93 4.85
559 560 3.449377 TGTATTATCGACACCTTGCTGGA 59.551 43.478 3.40 0.00 39.71 3.86
560 561 3.845781 ATTATCGACACCTTGCTGGAT 57.154 42.857 3.40 0.00 39.71 3.41
561 562 2.602257 TATCGACACCTTGCTGGATG 57.398 50.000 3.40 1.63 39.71 3.51
562 563 0.904649 ATCGACACCTTGCTGGATGA 59.095 50.000 3.40 0.00 39.71 2.92
563 564 0.037326 TCGACACCTTGCTGGATGAC 60.037 55.000 3.40 0.00 39.71 3.06
564 565 0.036952 CGACACCTTGCTGGATGACT 60.037 55.000 3.40 0.00 39.71 3.41
565 566 1.609061 CGACACCTTGCTGGATGACTT 60.609 52.381 3.40 0.00 39.71 3.01
566 567 1.808945 GACACCTTGCTGGATGACTTG 59.191 52.381 3.40 0.00 39.71 3.16
567 568 1.421268 ACACCTTGCTGGATGACTTGA 59.579 47.619 3.40 0.00 39.71 3.02
568 569 1.808945 CACCTTGCTGGATGACTTGAC 59.191 52.381 3.40 0.00 39.71 3.18
569 570 1.701847 ACCTTGCTGGATGACTTGACT 59.298 47.619 3.40 0.00 39.71 3.41
573 574 0.035630 GCTGGATGACTTGACTGCCT 60.036 55.000 0.00 0.00 0.00 4.75
884 912 3.998672 GGTTGGTGGCGACGGAGA 61.999 66.667 0.00 0.00 0.00 3.71
886 914 2.599281 TTGGTGGCGACGGAGAGA 60.599 61.111 0.00 0.00 0.00 3.10
902 930 4.419282 GGAGAGAGAGAGATCCATCCATT 58.581 47.826 0.00 0.00 0.00 3.16
903 931 4.221262 GGAGAGAGAGAGATCCATCCATTG 59.779 50.000 0.00 0.00 0.00 2.82
904 932 5.077369 AGAGAGAGAGATCCATCCATTGA 57.923 43.478 0.00 0.00 0.00 2.57
1001 1051 4.498520 CGCACGTCTCGCCCTCAT 62.499 66.667 0.00 0.00 0.00 2.90
1436 1500 3.117171 ACCTCGTCGTCGGACTCG 61.117 66.667 6.57 10.74 41.16 4.18
1607 1671 1.429463 GCGAGAAGGCGAAGAAGAAA 58.571 50.000 0.00 0.00 0.00 2.52
1628 1692 1.949257 CAGGCCGTGTTTTCCTGTC 59.051 57.895 0.00 0.00 41.76 3.51
1809 1873 3.723235 CTACCGCAGCCATCGTGCT 62.723 63.158 0.00 0.00 44.00 4.40
2073 2137 1.952266 GCACGCGACGGTTTTCTAGG 61.952 60.000 15.93 0.00 0.00 3.02
2074 2138 0.665369 CACGCGACGGTTTTCTAGGT 60.665 55.000 15.93 0.00 0.00 3.08
2267 2363 8.810652 TCAATATGTAAAACAAAAAGAGTGGC 57.189 30.769 0.00 0.00 0.00 5.01
2288 2384 4.874396 GGCGCTATTCCTAAGTAAACACTT 59.126 41.667 7.64 0.00 0.00 3.16
2289 2385 5.353400 GGCGCTATTCCTAAGTAAACACTTT 59.647 40.000 7.64 0.00 0.00 2.66
2290 2386 6.536224 GGCGCTATTCCTAAGTAAACACTTTA 59.464 38.462 7.64 0.00 0.00 1.85
2291 2387 7.064966 GGCGCTATTCCTAAGTAAACACTTTAA 59.935 37.037 7.64 0.00 0.00 1.52
2308 2404 8.864260 ACACTTTAATTACGTAATGTTTACGC 57.136 30.769 21.00 0.00 43.97 4.42
2328 2424 0.250901 ACCAGTTCACATGGACAGCC 60.251 55.000 0.00 0.00 40.51 4.85
2339 2435 2.254546 TGGACAGCCACAACAGTTAG 57.745 50.000 0.00 0.00 39.92 2.34
2340 2436 0.875059 GGACAGCCACAACAGTTAGC 59.125 55.000 0.00 0.00 0.00 3.09
2341 2437 1.543429 GGACAGCCACAACAGTTAGCT 60.543 52.381 0.00 0.00 0.00 3.32
2342 2438 2.289444 GGACAGCCACAACAGTTAGCTA 60.289 50.000 4.73 0.00 31.23 3.32
2343 2439 3.399330 GACAGCCACAACAGTTAGCTAA 58.601 45.455 0.86 0.86 31.23 3.09
2344 2440 3.813166 GACAGCCACAACAGTTAGCTAAA 59.187 43.478 7.99 0.00 31.23 1.85
2345 2441 4.204012 ACAGCCACAACAGTTAGCTAAAA 58.796 39.130 7.99 0.00 31.23 1.52
2346 2442 4.642885 ACAGCCACAACAGTTAGCTAAAAA 59.357 37.500 7.99 0.00 31.23 1.94
2403 2499 2.038863 TCAGGGGTGTCACATAGGTT 57.961 50.000 5.12 0.00 0.00 3.50
2421 2517 9.739276 ACATAGGTTCTCAAACTATGAAAATCA 57.261 29.630 22.48 0.00 37.67 2.57
2778 2905 3.142951 TGTTTCCAAATTCATCGGTCGT 58.857 40.909 0.00 0.00 0.00 4.34
3035 3188 1.769098 CTGTTCATGCGCCAGGATCG 61.769 60.000 4.18 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 9.252962 CCGAAACTAGTCAGAAACTAAAAACTA 57.747 33.333 0.00 0.00 39.98 2.24
68 69 7.983484 TCCGAAACTAGTCAGAAACTAAAAACT 59.017 33.333 0.00 0.00 39.98 2.66
69 70 8.060679 GTCCGAAACTAGTCAGAAACTAAAAAC 58.939 37.037 0.00 0.00 39.98 2.43
70 71 7.225341 GGTCCGAAACTAGTCAGAAACTAAAAA 59.775 37.037 0.00 0.00 39.98 1.94
71 72 6.703165 GGTCCGAAACTAGTCAGAAACTAAAA 59.297 38.462 0.00 0.00 39.98 1.52
72 73 6.218746 GGTCCGAAACTAGTCAGAAACTAAA 58.781 40.000 0.00 0.00 39.98 1.85
73 74 5.563475 CGGTCCGAAACTAGTCAGAAACTAA 60.563 44.000 4.91 0.00 39.98 2.24
74 75 4.083110 CGGTCCGAAACTAGTCAGAAACTA 60.083 45.833 4.91 0.00 39.55 2.24
75 76 3.305199 CGGTCCGAAACTAGTCAGAAACT 60.305 47.826 4.91 0.00 42.33 2.66
76 77 2.985139 CGGTCCGAAACTAGTCAGAAAC 59.015 50.000 4.91 0.00 0.00 2.78
77 78 2.029649 CCGGTCCGAAACTAGTCAGAAA 60.030 50.000 14.39 0.00 0.00 2.52
78 79 1.542915 CCGGTCCGAAACTAGTCAGAA 59.457 52.381 14.39 0.00 0.00 3.02
79 80 1.171308 CCGGTCCGAAACTAGTCAGA 58.829 55.000 14.39 0.00 0.00 3.27
80 81 1.171308 TCCGGTCCGAAACTAGTCAG 58.829 55.000 14.39 0.00 0.00 3.51
81 82 1.619654 TTCCGGTCCGAAACTAGTCA 58.380 50.000 14.39 0.00 0.00 3.41
82 83 2.928116 CAATTCCGGTCCGAAACTAGTC 59.072 50.000 14.39 0.00 0.00 2.59
83 84 2.301009 ACAATTCCGGTCCGAAACTAGT 59.699 45.455 14.39 1.01 0.00 2.57
84 85 2.968675 ACAATTCCGGTCCGAAACTAG 58.031 47.619 14.39 0.34 0.00 2.57
85 86 3.405823 AACAATTCCGGTCCGAAACTA 57.594 42.857 14.39 0.00 0.00 2.24
86 87 2.265589 AACAATTCCGGTCCGAAACT 57.734 45.000 14.39 0.00 0.00 2.66
87 88 2.033675 ACAAACAATTCCGGTCCGAAAC 59.966 45.455 14.39 0.00 0.00 2.78
88 89 2.033550 CACAAACAATTCCGGTCCGAAA 59.966 45.455 14.39 0.00 0.00 3.46
89 90 1.604755 CACAAACAATTCCGGTCCGAA 59.395 47.619 14.39 5.72 0.00 4.30
90 91 1.202663 TCACAAACAATTCCGGTCCGA 60.203 47.619 14.39 0.00 0.00 4.55
91 92 1.231221 TCACAAACAATTCCGGTCCG 58.769 50.000 3.60 3.60 0.00 4.79
92 93 3.719173 TTTCACAAACAATTCCGGTCC 57.281 42.857 0.00 0.00 0.00 4.46
93 94 4.865776 TCATTTCACAAACAATTCCGGTC 58.134 39.130 0.00 0.00 0.00 4.79
94 95 4.927978 TCATTTCACAAACAATTCCGGT 57.072 36.364 0.00 0.00 0.00 5.28
95 96 5.468592 TCATCATTTCACAAACAATTCCGG 58.531 37.500 0.00 0.00 0.00 5.14
96 97 7.405469 TTTCATCATTTCACAAACAATTCCG 57.595 32.000 0.00 0.00 0.00 4.30
124 125 9.734620 CAGAGACTTTGTTTGTTCATTCAATAA 57.265 29.630 0.00 0.00 0.00 1.40
125 126 9.119418 TCAGAGACTTTGTTTGTTCATTCAATA 57.881 29.630 0.00 0.00 0.00 1.90
126 127 7.999679 TCAGAGACTTTGTTTGTTCATTCAAT 58.000 30.769 0.00 0.00 0.00 2.57
127 128 7.389803 TCAGAGACTTTGTTTGTTCATTCAA 57.610 32.000 0.00 0.00 0.00 2.69
128 129 7.389803 TTCAGAGACTTTGTTTGTTCATTCA 57.610 32.000 0.00 0.00 0.00 2.57
129 130 8.687824 TTTTCAGAGACTTTGTTTGTTCATTC 57.312 30.769 0.00 0.00 0.00 2.67
130 131 9.143631 CTTTTTCAGAGACTTTGTTTGTTCATT 57.856 29.630 0.00 0.00 0.00 2.57
131 132 8.306761 ACTTTTTCAGAGACTTTGTTTGTTCAT 58.693 29.630 0.00 0.00 0.00 2.57
132 133 7.657336 ACTTTTTCAGAGACTTTGTTTGTTCA 58.343 30.769 0.00 0.00 0.00 3.18
133 134 8.520835 AACTTTTTCAGAGACTTTGTTTGTTC 57.479 30.769 0.00 0.00 0.00 3.18
134 135 9.974980 TTAACTTTTTCAGAGACTTTGTTTGTT 57.025 25.926 0.00 0.00 0.00 2.83
135 136 9.626045 CTTAACTTTTTCAGAGACTTTGTTTGT 57.374 29.630 0.00 0.00 0.00 2.83
136 137 9.840427 TCTTAACTTTTTCAGAGACTTTGTTTG 57.160 29.630 0.00 0.00 0.00 2.93
168 169 9.530633 CTCTCTTAAATTTAGTAACGGCTATGT 57.469 33.333 0.00 0.00 0.00 2.29
169 170 9.745880 TCTCTCTTAAATTTAGTAACGGCTATG 57.254 33.333 0.00 0.00 0.00 2.23
171 172 9.798994 CTTCTCTCTTAAATTTAGTAACGGCTA 57.201 33.333 0.00 0.00 0.00 3.93
172 173 7.278203 GCTTCTCTCTTAAATTTAGTAACGGCT 59.722 37.037 0.00 0.00 0.00 5.52
173 174 7.064253 TGCTTCTCTCTTAAATTTAGTAACGGC 59.936 37.037 0.00 0.11 0.00 5.68
174 175 8.475331 TGCTTCTCTCTTAAATTTAGTAACGG 57.525 34.615 0.00 0.00 0.00 4.44
203 204 9.295825 AGGAAGTACATGTGTCATAAAATTTGA 57.704 29.630 9.11 0.00 0.00 2.69
204 205 9.345517 CAGGAAGTACATGTGTCATAAAATTTG 57.654 33.333 9.11 0.00 0.00 2.32
205 206 9.295825 TCAGGAAGTACATGTGTCATAAAATTT 57.704 29.630 9.11 0.00 0.00 1.82
206 207 8.862325 TCAGGAAGTACATGTGTCATAAAATT 57.138 30.769 9.11 0.00 0.00 1.82
207 208 8.862325 TTCAGGAAGTACATGTGTCATAAAAT 57.138 30.769 9.11 0.00 0.00 1.82
208 209 8.684386 TTTCAGGAAGTACATGTGTCATAAAA 57.316 30.769 9.11 0.00 0.00 1.52
209 210 8.862325 ATTTCAGGAAGTACATGTGTCATAAA 57.138 30.769 9.11 5.63 0.00 1.40
210 211 8.862325 AATTTCAGGAAGTACATGTGTCATAA 57.138 30.769 9.11 0.00 0.00 1.90
211 212 8.862325 AAATTTCAGGAAGTACATGTGTCATA 57.138 30.769 9.11 0.00 0.00 2.15
212 213 7.765695 AAATTTCAGGAAGTACATGTGTCAT 57.234 32.000 9.11 0.00 0.00 3.06
213 214 7.284261 TCAAAATTTCAGGAAGTACATGTGTCA 59.716 33.333 9.11 0.00 0.00 3.58
214 215 7.648142 TCAAAATTTCAGGAAGTACATGTGTC 58.352 34.615 9.11 3.03 0.00 3.67
215 216 7.581213 TCAAAATTTCAGGAAGTACATGTGT 57.419 32.000 9.11 0.00 0.00 3.72
216 217 8.870160 TTTCAAAATTTCAGGAAGTACATGTG 57.130 30.769 9.11 0.00 0.00 3.21
217 218 9.696917 GATTTCAAAATTTCAGGAAGTACATGT 57.303 29.630 2.69 2.69 0.00 3.21
218 219 9.695526 TGATTTCAAAATTTCAGGAAGTACATG 57.304 29.630 0.00 0.00 0.00 3.21
312 313 6.975196 TTGAATTCTGGTGAGATCCAAAAA 57.025 33.333 7.05 0.00 37.01 1.94
313 314 7.543359 AATTGAATTCTGGTGAGATCCAAAA 57.457 32.000 7.05 0.00 37.01 2.44
314 315 7.669304 TGTAATTGAATTCTGGTGAGATCCAAA 59.331 33.333 7.05 0.00 37.01 3.28
315 316 7.174413 TGTAATTGAATTCTGGTGAGATCCAA 58.826 34.615 7.05 0.00 37.01 3.53
316 317 6.720309 TGTAATTGAATTCTGGTGAGATCCA 58.280 36.000 7.05 0.00 36.00 3.41
317 318 7.630242 TTGTAATTGAATTCTGGTGAGATCC 57.370 36.000 7.05 0.00 0.00 3.36
318 319 8.734386 ACTTTGTAATTGAATTCTGGTGAGATC 58.266 33.333 7.05 0.00 0.00 2.75
319 320 8.517878 CACTTTGTAATTGAATTCTGGTGAGAT 58.482 33.333 7.05 0.00 0.00 2.75
320 321 7.502226 ACACTTTGTAATTGAATTCTGGTGAGA 59.498 33.333 7.05 0.00 0.00 3.27
321 322 7.592533 CACACTTTGTAATTGAATTCTGGTGAG 59.407 37.037 7.05 0.00 0.00 3.51
322 323 7.424803 CACACTTTGTAATTGAATTCTGGTGA 58.575 34.615 7.05 0.00 0.00 4.02
323 324 6.642131 CCACACTTTGTAATTGAATTCTGGTG 59.358 38.462 7.05 1.58 0.00 4.17
324 325 6.239289 CCCACACTTTGTAATTGAATTCTGGT 60.239 38.462 7.05 0.00 0.00 4.00
325 326 6.158598 CCCACACTTTGTAATTGAATTCTGG 58.841 40.000 7.05 1.06 0.00 3.86
326 327 6.158598 CCCCACACTTTGTAATTGAATTCTG 58.841 40.000 7.05 0.00 0.00 3.02
327 328 5.245977 CCCCCACACTTTGTAATTGAATTCT 59.754 40.000 7.05 0.00 0.00 2.40
328 329 5.245075 TCCCCCACACTTTGTAATTGAATTC 59.755 40.000 0.00 0.00 0.00 2.17
329 330 5.151454 TCCCCCACACTTTGTAATTGAATT 58.849 37.500 0.00 0.00 0.00 2.17
330 331 4.746466 TCCCCCACACTTTGTAATTGAAT 58.254 39.130 0.00 0.00 0.00 2.57
331 332 4.186077 TCCCCCACACTTTGTAATTGAA 57.814 40.909 0.00 0.00 0.00 2.69
332 333 3.885976 TCCCCCACACTTTGTAATTGA 57.114 42.857 0.00 0.00 0.00 2.57
333 334 4.946478 TTTCCCCCACACTTTGTAATTG 57.054 40.909 0.00 0.00 0.00 2.32
334 335 6.295249 CAAATTTCCCCCACACTTTGTAATT 58.705 36.000 0.00 0.00 0.00 1.40
335 336 5.221823 CCAAATTTCCCCCACACTTTGTAAT 60.222 40.000 0.00 0.00 0.00 1.89
336 337 4.101741 CCAAATTTCCCCCACACTTTGTAA 59.898 41.667 0.00 0.00 0.00 2.41
337 338 3.643792 CCAAATTTCCCCCACACTTTGTA 59.356 43.478 0.00 0.00 0.00 2.41
338 339 2.437651 CCAAATTTCCCCCACACTTTGT 59.562 45.455 0.00 0.00 0.00 2.83
339 340 2.703007 TCCAAATTTCCCCCACACTTTG 59.297 45.455 0.00 0.00 0.00 2.77
340 341 3.053359 TCCAAATTTCCCCCACACTTT 57.947 42.857 0.00 0.00 0.00 2.66
341 342 2.785357 TCCAAATTTCCCCCACACTT 57.215 45.000 0.00 0.00 0.00 3.16
342 343 2.539302 CATCCAAATTTCCCCCACACT 58.461 47.619 0.00 0.00 0.00 3.55
343 344 1.066215 GCATCCAAATTTCCCCCACAC 60.066 52.381 0.00 0.00 0.00 3.82
344 345 1.274712 GCATCCAAATTTCCCCCACA 58.725 50.000 0.00 0.00 0.00 4.17
345 346 1.274712 TGCATCCAAATTTCCCCCAC 58.725 50.000 0.00 0.00 0.00 4.61
346 347 2.267160 ATGCATCCAAATTTCCCCCA 57.733 45.000 0.00 0.00 0.00 4.96
347 348 3.070015 CACTATGCATCCAAATTTCCCCC 59.930 47.826 0.19 0.00 0.00 5.40
348 349 3.960102 TCACTATGCATCCAAATTTCCCC 59.040 43.478 0.19 0.00 0.00 4.81
349 350 5.796424 ATCACTATGCATCCAAATTTCCC 57.204 39.130 0.19 0.00 0.00 3.97
350 351 7.229306 TCTGTATCACTATGCATCCAAATTTCC 59.771 37.037 0.19 0.00 0.00 3.13
351 352 8.158169 TCTGTATCACTATGCATCCAAATTTC 57.842 34.615 0.19 0.00 0.00 2.17
352 353 8.523915 TTCTGTATCACTATGCATCCAAATTT 57.476 30.769 0.19 0.00 0.00 1.82
353 354 8.523915 TTTCTGTATCACTATGCATCCAAATT 57.476 30.769 0.19 0.00 0.00 1.82
354 355 8.523915 TTTTCTGTATCACTATGCATCCAAAT 57.476 30.769 0.19 0.00 0.00 2.32
355 356 7.936496 TTTTCTGTATCACTATGCATCCAAA 57.064 32.000 0.19 0.00 0.00 3.28
356 357 7.392953 TGTTTTTCTGTATCACTATGCATCCAA 59.607 33.333 0.19 0.00 0.00 3.53
357 358 6.883756 TGTTTTTCTGTATCACTATGCATCCA 59.116 34.615 0.19 0.00 0.00 3.41
358 359 7.320443 TGTTTTTCTGTATCACTATGCATCC 57.680 36.000 0.19 0.00 0.00 3.51
359 360 8.454106 AGTTGTTTTTCTGTATCACTATGCATC 58.546 33.333 0.19 0.00 0.00 3.91
360 361 8.340618 AGTTGTTTTTCTGTATCACTATGCAT 57.659 30.769 3.79 3.79 0.00 3.96
361 362 7.661437 AGAGTTGTTTTTCTGTATCACTATGCA 59.339 33.333 0.00 0.00 0.00 3.96
362 363 8.034058 AGAGTTGTTTTTCTGTATCACTATGC 57.966 34.615 0.00 0.00 0.00 3.14
366 367 9.057089 CCTTAAGAGTTGTTTTTCTGTATCACT 57.943 33.333 3.36 0.00 0.00 3.41
367 368 8.837389 ACCTTAAGAGTTGTTTTTCTGTATCAC 58.163 33.333 3.36 0.00 0.00 3.06
368 369 8.836413 CACCTTAAGAGTTGTTTTTCTGTATCA 58.164 33.333 3.36 0.00 0.00 2.15
369 370 8.837389 ACACCTTAAGAGTTGTTTTTCTGTATC 58.163 33.333 3.36 0.00 0.00 2.24
370 371 8.747538 ACACCTTAAGAGTTGTTTTTCTGTAT 57.252 30.769 3.36 0.00 0.00 2.29
371 372 9.101655 GTACACCTTAAGAGTTGTTTTTCTGTA 57.898 33.333 3.36 0.00 0.00 2.74
372 373 7.608761 TGTACACCTTAAGAGTTGTTTTTCTGT 59.391 33.333 3.36 0.00 0.00 3.41
373 374 7.908601 GTGTACACCTTAAGAGTTGTTTTTCTG 59.091 37.037 15.42 0.00 0.00 3.02
374 375 7.608761 TGTGTACACCTTAAGAGTTGTTTTTCT 59.391 33.333 22.91 0.00 0.00 2.52
375 376 7.754625 TGTGTACACCTTAAGAGTTGTTTTTC 58.245 34.615 22.91 0.00 0.00 2.29
376 377 7.148137 CCTGTGTACACCTTAAGAGTTGTTTTT 60.148 37.037 22.91 0.00 0.00 1.94
377 378 6.317893 CCTGTGTACACCTTAAGAGTTGTTTT 59.682 38.462 22.91 0.00 0.00 2.43
378 379 5.820947 CCTGTGTACACCTTAAGAGTTGTTT 59.179 40.000 22.91 0.00 0.00 2.83
379 380 5.365619 CCTGTGTACACCTTAAGAGTTGTT 58.634 41.667 22.91 0.00 0.00 2.83
380 381 4.202326 CCCTGTGTACACCTTAAGAGTTGT 60.202 45.833 22.91 6.80 0.00 3.32
381 382 4.039973 TCCCTGTGTACACCTTAAGAGTTG 59.960 45.833 22.91 6.42 0.00 3.16
382 383 4.228824 TCCCTGTGTACACCTTAAGAGTT 58.771 43.478 22.91 0.00 0.00 3.01
383 384 3.833070 CTCCCTGTGTACACCTTAAGAGT 59.167 47.826 22.91 4.95 0.00 3.24
384 385 3.833070 ACTCCCTGTGTACACCTTAAGAG 59.167 47.826 22.91 20.50 0.00 2.85
385 386 3.576982 CACTCCCTGTGTACACCTTAAGA 59.423 47.826 22.91 11.35 41.53 2.10
386 387 3.926616 CACTCCCTGTGTACACCTTAAG 58.073 50.000 22.91 16.38 41.53 1.85
398 399 3.392616 ACTTTGAGATTCACACTCCCTGT 59.607 43.478 0.00 0.00 33.95 4.00
399 400 3.750130 CACTTTGAGATTCACACTCCCTG 59.250 47.826 0.00 0.00 33.95 4.45
400 401 3.808618 GCACTTTGAGATTCACACTCCCT 60.809 47.826 0.00 0.00 33.95 4.20
401 402 2.485814 GCACTTTGAGATTCACACTCCC 59.514 50.000 0.00 0.00 33.95 4.30
402 403 3.141398 TGCACTTTGAGATTCACACTCC 58.859 45.455 0.00 0.00 33.95 3.85
403 404 4.818534 TTGCACTTTGAGATTCACACTC 57.181 40.909 0.00 0.00 35.26 3.51
404 405 4.823442 TCATTGCACTTTGAGATTCACACT 59.177 37.500 0.00 0.00 0.00 3.55
405 406 5.112220 TCATTGCACTTTGAGATTCACAC 57.888 39.130 0.00 0.00 0.00 3.82
406 407 5.522456 GTTCATTGCACTTTGAGATTCACA 58.478 37.500 0.00 0.00 0.00 3.58
407 408 4.614284 CGTTCATTGCACTTTGAGATTCAC 59.386 41.667 0.00 0.00 0.00 3.18
408 409 4.320421 CCGTTCATTGCACTTTGAGATTCA 60.320 41.667 0.00 0.00 0.00 2.57
409 410 4.161333 CCGTTCATTGCACTTTGAGATTC 58.839 43.478 0.00 0.00 0.00 2.52
410 411 3.612479 GCCGTTCATTGCACTTTGAGATT 60.612 43.478 0.00 0.00 0.00 2.40
411 412 2.095059 GCCGTTCATTGCACTTTGAGAT 60.095 45.455 0.00 0.00 0.00 2.75
412 413 1.266718 GCCGTTCATTGCACTTTGAGA 59.733 47.619 0.00 0.00 0.00 3.27
413 414 1.267806 AGCCGTTCATTGCACTTTGAG 59.732 47.619 0.00 0.00 0.00 3.02
414 415 1.266718 GAGCCGTTCATTGCACTTTGA 59.733 47.619 0.00 0.00 0.00 2.69
415 416 1.267806 AGAGCCGTTCATTGCACTTTG 59.732 47.619 0.00 0.00 0.00 2.77
416 417 1.609208 AGAGCCGTTCATTGCACTTT 58.391 45.000 0.00 0.00 0.00 2.66
417 418 2.472695 TAGAGCCGTTCATTGCACTT 57.527 45.000 0.00 0.00 30.93 3.16
418 419 2.076863 GTTAGAGCCGTTCATTGCACT 58.923 47.619 0.00 0.00 33.04 4.40
419 420 1.804151 TGTTAGAGCCGTTCATTGCAC 59.196 47.619 0.00 0.00 0.00 4.57
420 421 1.804151 GTGTTAGAGCCGTTCATTGCA 59.196 47.619 0.00 0.00 0.00 4.08
421 422 1.201921 CGTGTTAGAGCCGTTCATTGC 60.202 52.381 0.00 0.00 0.00 3.56
422 423 2.066262 ACGTGTTAGAGCCGTTCATTG 58.934 47.619 0.00 0.00 0.00 2.82
423 424 2.066262 CACGTGTTAGAGCCGTTCATT 58.934 47.619 7.58 0.00 31.46 2.57
424 425 1.271379 TCACGTGTTAGAGCCGTTCAT 59.729 47.619 16.51 0.00 31.46 2.57
425 426 0.669619 TCACGTGTTAGAGCCGTTCA 59.330 50.000 16.51 0.00 31.46 3.18
426 427 1.068748 TCTCACGTGTTAGAGCCGTTC 60.069 52.381 16.51 0.00 31.46 3.95
427 428 0.956633 TCTCACGTGTTAGAGCCGTT 59.043 50.000 16.51 0.00 31.46 4.44
428 429 0.956633 TTCTCACGTGTTAGAGCCGT 59.043 50.000 16.51 0.00 34.71 5.68
429 430 1.335597 TGTTCTCACGTGTTAGAGCCG 60.336 52.381 16.51 0.00 0.00 5.52
430 431 2.030185 TCTGTTCTCACGTGTTAGAGCC 60.030 50.000 16.51 7.16 0.00 4.70
431 432 3.238441 CTCTGTTCTCACGTGTTAGAGC 58.762 50.000 16.51 14.04 0.00 4.09
432 433 4.491234 ACTCTGTTCTCACGTGTTAGAG 57.509 45.455 16.51 20.61 36.98 2.43
433 434 4.913335 AACTCTGTTCTCACGTGTTAGA 57.087 40.909 16.51 9.25 0.00 2.10
434 435 5.968387 AAAACTCTGTTCTCACGTGTTAG 57.032 39.130 16.51 6.69 0.00 2.34
435 436 5.870433 TCAAAAACTCTGTTCTCACGTGTTA 59.130 36.000 16.51 1.62 0.00 2.41
436 437 4.693566 TCAAAAACTCTGTTCTCACGTGTT 59.306 37.500 16.51 0.00 0.00 3.32
437 438 4.250464 TCAAAAACTCTGTTCTCACGTGT 58.750 39.130 16.51 0.00 0.00 4.49
438 439 4.857871 TCAAAAACTCTGTTCTCACGTG 57.142 40.909 9.94 9.94 0.00 4.49
439 440 6.046593 TGTATCAAAAACTCTGTTCTCACGT 58.953 36.000 0.00 0.00 0.00 4.49
440 441 6.525121 TGTATCAAAAACTCTGTTCTCACG 57.475 37.500 0.00 0.00 0.00 4.35
441 442 7.693952 TGTTGTATCAAAAACTCTGTTCTCAC 58.306 34.615 0.00 0.00 0.00 3.51
442 443 7.857734 TGTTGTATCAAAAACTCTGTTCTCA 57.142 32.000 0.00 0.00 0.00 3.27
443 444 8.559536 TCATGTTGTATCAAAAACTCTGTTCTC 58.440 33.333 0.00 0.00 0.00 2.87
444 445 8.450578 TCATGTTGTATCAAAAACTCTGTTCT 57.549 30.769 0.00 0.00 0.00 3.01
445 446 9.334693 GATCATGTTGTATCAAAAACTCTGTTC 57.665 33.333 0.00 0.00 0.00 3.18
446 447 8.299570 GGATCATGTTGTATCAAAAACTCTGTT 58.700 33.333 0.00 0.00 0.00 3.16
447 448 7.094205 GGGATCATGTTGTATCAAAAACTCTGT 60.094 37.037 0.00 0.00 0.00 3.41
448 449 7.121759 AGGGATCATGTTGTATCAAAAACTCTG 59.878 37.037 0.00 0.00 0.00 3.35
449 450 7.177878 AGGGATCATGTTGTATCAAAAACTCT 58.822 34.615 0.00 0.00 0.00 3.24
450 451 7.396540 AGGGATCATGTTGTATCAAAAACTC 57.603 36.000 0.00 0.00 0.00 3.01
451 452 7.781324 AAGGGATCATGTTGTATCAAAAACT 57.219 32.000 0.00 0.00 0.00 2.66
452 453 8.711457 CAAAAGGGATCATGTTGTATCAAAAAC 58.289 33.333 0.00 0.00 0.00 2.43
453 454 7.387397 GCAAAAGGGATCATGTTGTATCAAAAA 59.613 33.333 0.00 0.00 0.00 1.94
454 455 6.873076 GCAAAAGGGATCATGTTGTATCAAAA 59.127 34.615 0.00 0.00 0.00 2.44
455 456 6.211184 AGCAAAAGGGATCATGTTGTATCAAA 59.789 34.615 0.00 0.00 0.00 2.69
456 457 5.716228 AGCAAAAGGGATCATGTTGTATCAA 59.284 36.000 0.00 0.00 0.00 2.57
457 458 5.263599 AGCAAAAGGGATCATGTTGTATCA 58.736 37.500 0.00 0.00 0.00 2.15
458 459 5.591877 AGAGCAAAAGGGATCATGTTGTATC 59.408 40.000 0.00 0.00 0.00 2.24
459 460 5.359009 CAGAGCAAAAGGGATCATGTTGTAT 59.641 40.000 0.00 0.00 0.00 2.29
460 461 4.701651 CAGAGCAAAAGGGATCATGTTGTA 59.298 41.667 0.00 0.00 0.00 2.41
461 462 3.508793 CAGAGCAAAAGGGATCATGTTGT 59.491 43.478 0.00 0.00 0.00 3.32
462 463 3.675228 GCAGAGCAAAAGGGATCATGTTG 60.675 47.826 0.00 0.00 0.00 3.33
463 464 2.494870 GCAGAGCAAAAGGGATCATGTT 59.505 45.455 0.00 0.00 0.00 2.71
464 465 2.097825 GCAGAGCAAAAGGGATCATGT 58.902 47.619 0.00 0.00 0.00 3.21
465 466 2.376109 AGCAGAGCAAAAGGGATCATG 58.624 47.619 0.00 0.00 0.00 3.07
466 467 2.822707 AGCAGAGCAAAAGGGATCAT 57.177 45.000 0.00 0.00 0.00 2.45
467 468 2.592102 AAGCAGAGCAAAAGGGATCA 57.408 45.000 0.00 0.00 0.00 2.92
468 469 3.949842 AAAAGCAGAGCAAAAGGGATC 57.050 42.857 0.00 0.00 0.00 3.36
486 487 7.327214 ACACAGCTTATTTTCAGGAACAAAAA 58.673 30.769 0.00 0.00 31.72 1.94
487 488 6.872920 ACACAGCTTATTTTCAGGAACAAAA 58.127 32.000 0.00 0.00 0.00 2.44
488 489 6.463995 ACACAGCTTATTTTCAGGAACAAA 57.536 33.333 0.00 0.00 0.00 2.83
489 490 6.770785 ACTACACAGCTTATTTTCAGGAACAA 59.229 34.615 0.00 0.00 0.00 2.83
490 491 6.296026 ACTACACAGCTTATTTTCAGGAACA 58.704 36.000 0.00 0.00 0.00 3.18
491 492 6.803154 ACTACACAGCTTATTTTCAGGAAC 57.197 37.500 0.00 0.00 0.00 3.62
492 493 8.911918 TTTACTACACAGCTTATTTTCAGGAA 57.088 30.769 0.00 0.00 0.00 3.36
493 494 7.606456 CCTTTACTACACAGCTTATTTTCAGGA 59.394 37.037 0.00 0.00 0.00 3.86
494 495 7.606456 TCCTTTACTACACAGCTTATTTTCAGG 59.394 37.037 0.00 0.00 0.00 3.86
495 496 8.547967 TCCTTTACTACACAGCTTATTTTCAG 57.452 34.615 0.00 0.00 0.00 3.02
496 497 8.780249 GTTCCTTTACTACACAGCTTATTTTCA 58.220 33.333 0.00 0.00 0.00 2.69
497 498 9.000486 AGTTCCTTTACTACACAGCTTATTTTC 58.000 33.333 0.00 0.00 0.00 2.29
498 499 8.784043 CAGTTCCTTTACTACACAGCTTATTTT 58.216 33.333 0.00 0.00 0.00 1.82
499 500 7.390718 CCAGTTCCTTTACTACACAGCTTATTT 59.609 37.037 0.00 0.00 0.00 1.40
500 501 6.879458 CCAGTTCCTTTACTACACAGCTTATT 59.121 38.462 0.00 0.00 0.00 1.40
501 502 6.407202 CCAGTTCCTTTACTACACAGCTTAT 58.593 40.000 0.00 0.00 0.00 1.73
502 503 5.790593 CCAGTTCCTTTACTACACAGCTTA 58.209 41.667 0.00 0.00 0.00 3.09
503 504 4.642429 CCAGTTCCTTTACTACACAGCTT 58.358 43.478 0.00 0.00 0.00 3.74
504 505 3.557264 GCCAGTTCCTTTACTACACAGCT 60.557 47.826 0.00 0.00 0.00 4.24
505 506 2.742589 GCCAGTTCCTTTACTACACAGC 59.257 50.000 0.00 0.00 0.00 4.40
506 507 4.002906 TGCCAGTTCCTTTACTACACAG 57.997 45.455 0.00 0.00 0.00 3.66
507 508 4.041075 TCATGCCAGTTCCTTTACTACACA 59.959 41.667 0.00 0.00 0.00 3.72
508 509 4.575885 TCATGCCAGTTCCTTTACTACAC 58.424 43.478 0.00 0.00 0.00 2.90
509 510 4.832248 CTCATGCCAGTTCCTTTACTACA 58.168 43.478 0.00 0.00 0.00 2.74
510 511 3.623510 GCTCATGCCAGTTCCTTTACTAC 59.376 47.826 0.00 0.00 0.00 2.73
511 512 3.263170 TGCTCATGCCAGTTCCTTTACTA 59.737 43.478 0.00 0.00 38.71 1.82
512 513 2.040278 TGCTCATGCCAGTTCCTTTACT 59.960 45.455 0.00 0.00 38.71 2.24
513 514 2.436417 TGCTCATGCCAGTTCCTTTAC 58.564 47.619 0.00 0.00 38.71 2.01
514 515 2.819608 GTTGCTCATGCCAGTTCCTTTA 59.180 45.455 0.00 0.00 38.71 1.85
515 516 1.615392 GTTGCTCATGCCAGTTCCTTT 59.385 47.619 0.00 0.00 38.71 3.11
516 517 1.251251 GTTGCTCATGCCAGTTCCTT 58.749 50.000 0.00 0.00 38.71 3.36
517 518 0.610232 GGTTGCTCATGCCAGTTCCT 60.610 55.000 0.00 0.00 38.71 3.36
518 519 0.610232 AGGTTGCTCATGCCAGTTCC 60.610 55.000 0.00 0.00 38.71 3.62
519 520 0.524862 CAGGTTGCTCATGCCAGTTC 59.475 55.000 0.00 0.00 38.71 3.01
520 521 0.178981 ACAGGTTGCTCATGCCAGTT 60.179 50.000 0.00 0.00 38.71 3.16
521 522 0.692476 TACAGGTTGCTCATGCCAGT 59.308 50.000 0.00 0.00 38.71 4.00
522 523 2.048444 ATACAGGTTGCTCATGCCAG 57.952 50.000 0.00 0.00 38.71 4.85
523 524 2.512692 AATACAGGTTGCTCATGCCA 57.487 45.000 0.00 0.00 38.71 4.92
524 525 3.187227 CGATAATACAGGTTGCTCATGCC 59.813 47.826 0.00 0.00 38.71 4.40
525 526 4.058124 TCGATAATACAGGTTGCTCATGC 58.942 43.478 0.00 0.00 40.20 4.06
526 527 5.049828 TGTCGATAATACAGGTTGCTCATG 58.950 41.667 0.00 0.00 0.00 3.07
527 528 5.050490 GTGTCGATAATACAGGTTGCTCAT 58.950 41.667 0.00 0.00 0.00 2.90
528 529 4.430007 GTGTCGATAATACAGGTTGCTCA 58.570 43.478 0.00 0.00 0.00 4.26
529 530 3.802685 GGTGTCGATAATACAGGTTGCTC 59.197 47.826 0.00 0.00 0.00 4.26
530 531 3.451178 AGGTGTCGATAATACAGGTTGCT 59.549 43.478 0.00 0.00 0.00 3.91
531 532 3.793559 AGGTGTCGATAATACAGGTTGC 58.206 45.455 0.00 0.00 0.00 4.17
532 533 4.034048 GCAAGGTGTCGATAATACAGGTTG 59.966 45.833 0.00 0.00 0.00 3.77
533 534 4.081087 AGCAAGGTGTCGATAATACAGGTT 60.081 41.667 0.00 0.00 0.00 3.50
534 535 3.451178 AGCAAGGTGTCGATAATACAGGT 59.549 43.478 0.00 0.00 0.00 4.00
535 536 3.804325 CAGCAAGGTGTCGATAATACAGG 59.196 47.826 0.00 0.00 0.00 4.00
536 537 3.804325 CCAGCAAGGTGTCGATAATACAG 59.196 47.826 0.00 0.00 0.00 2.74
537 538 3.449377 TCCAGCAAGGTGTCGATAATACA 59.551 43.478 0.00 0.00 39.02 2.29
538 539 4.054780 TCCAGCAAGGTGTCGATAATAC 57.945 45.455 0.00 0.00 39.02 1.89
539 540 4.343814 TCATCCAGCAAGGTGTCGATAATA 59.656 41.667 0.00 0.00 39.02 0.98
540 541 3.134623 TCATCCAGCAAGGTGTCGATAAT 59.865 43.478 0.00 0.00 39.02 1.28
541 542 2.499693 TCATCCAGCAAGGTGTCGATAA 59.500 45.455 0.00 0.00 39.02 1.75
542 543 2.107366 TCATCCAGCAAGGTGTCGATA 58.893 47.619 0.00 0.00 39.02 2.92
543 544 0.904649 TCATCCAGCAAGGTGTCGAT 59.095 50.000 0.00 0.00 39.02 3.59
544 545 0.037326 GTCATCCAGCAAGGTGTCGA 60.037 55.000 0.00 0.00 39.02 4.20
545 546 0.036952 AGTCATCCAGCAAGGTGTCG 60.037 55.000 0.00 0.00 39.02 4.35
546 547 1.808945 CAAGTCATCCAGCAAGGTGTC 59.191 52.381 0.00 0.00 39.02 3.67
547 548 1.421268 TCAAGTCATCCAGCAAGGTGT 59.579 47.619 0.00 0.00 39.02 4.16
548 549 1.808945 GTCAAGTCATCCAGCAAGGTG 59.191 52.381 0.00 0.00 39.02 4.00
549 550 1.701847 AGTCAAGTCATCCAGCAAGGT 59.298 47.619 0.00 0.00 39.02 3.50
550 551 2.082231 CAGTCAAGTCATCCAGCAAGG 58.918 52.381 0.00 0.00 39.47 3.61
551 552 1.467734 GCAGTCAAGTCATCCAGCAAG 59.532 52.381 0.00 0.00 0.00 4.01
552 553 1.527034 GCAGTCAAGTCATCCAGCAA 58.473 50.000 0.00 0.00 0.00 3.91
553 554 0.321919 GGCAGTCAAGTCATCCAGCA 60.322 55.000 0.00 0.00 0.00 4.41
554 555 0.035630 AGGCAGTCAAGTCATCCAGC 60.036 55.000 0.00 0.00 0.00 4.85
555 556 1.735386 CAGGCAGTCAAGTCATCCAG 58.265 55.000 0.00 0.00 0.00 3.86
556 557 0.321919 GCAGGCAGTCAAGTCATCCA 60.322 55.000 0.00 0.00 0.00 3.41
557 558 1.028868 GGCAGGCAGTCAAGTCATCC 61.029 60.000 0.00 0.00 0.00 3.51
558 559 1.364626 CGGCAGGCAGTCAAGTCATC 61.365 60.000 0.00 0.00 0.00 2.92
559 560 1.376424 CGGCAGGCAGTCAAGTCAT 60.376 57.895 0.00 0.00 0.00 3.06
560 561 2.031012 CGGCAGGCAGTCAAGTCA 59.969 61.111 0.00 0.00 0.00 3.41
561 562 2.743928 CCGGCAGGCAGTCAAGTC 60.744 66.667 0.00 0.00 0.00 3.01
728 735 3.980442 TTGCGCCCGGGATGTTACC 62.980 63.158 29.31 2.60 0.00 2.85
729 736 1.381165 ATTTGCGCCCGGGATGTTAC 61.381 55.000 29.31 3.52 0.00 2.50
730 737 0.180642 TATTTGCGCCCGGGATGTTA 59.819 50.000 29.31 6.01 0.00 2.41
731 738 0.681564 TTATTTGCGCCCGGGATGTT 60.682 50.000 29.31 5.41 0.00 2.71
732 739 0.467290 ATTATTTGCGCCCGGGATGT 60.467 50.000 29.31 5.52 0.00 3.06
733 740 0.039256 CATTATTTGCGCCCGGGATG 60.039 55.000 29.31 17.68 0.00 3.51
734 741 1.805428 GCATTATTTGCGCCCGGGAT 61.805 55.000 29.31 11.31 42.54 3.85
735 742 2.485795 GCATTATTTGCGCCCGGGA 61.486 57.895 29.31 1.71 42.54 5.14
736 743 2.027460 GCATTATTTGCGCCCGGG 59.973 61.111 19.09 19.09 42.54 5.73
755 762 1.378911 GGTCCTGTGCATGGCATCA 60.379 57.895 0.00 0.00 41.91 3.07
830 843 3.750373 TTATCAAGCTCGCCCGGCC 62.750 63.158 3.10 0.00 0.00 6.13
834 847 1.604278 GGTGAATTATCAAGCTCGCCC 59.396 52.381 0.00 0.00 37.30 6.13
840 853 0.317020 GGCGCGGTGAATTATCAAGC 60.317 55.000 8.83 0.00 37.30 4.01
884 912 4.140734 TCCTCAATGGATGGATCTCTCTCT 60.141 45.833 0.00 0.00 40.56 3.10
886 914 4.210611 TCCTCAATGGATGGATCTCTCT 57.789 45.455 0.00 0.00 40.56 3.10
954 996 3.255642 GGTTTATATAGGGTCGGTGCGTA 59.744 47.826 0.00 0.00 0.00 4.42
1001 1051 3.458163 GCGTGGGAGTGGGATCGA 61.458 66.667 0.00 0.00 0.00 3.59
1080 1135 3.063704 CATGCCAGGGAAAGCGCA 61.064 61.111 11.47 0.00 35.35 6.09
1081 1136 3.830192 CCATGCCAGGGAAAGCGC 61.830 66.667 0.00 0.00 0.00 5.92
1085 1140 0.549902 TCCTCTCCATGCCAGGGAAA 60.550 55.000 0.00 0.00 33.11 3.13
1607 1671 2.597510 GGAAAACACGGCCTGCCT 60.598 61.111 6.60 0.00 0.00 4.75
1705 1769 0.322008 GGTGAACAGAGCCTTGAGGG 60.322 60.000 0.00 0.00 35.18 4.30
2180 2275 7.418337 AACTTTGGACTTGGACAAATTTAGT 57.582 32.000 0.00 0.00 36.16 2.24
2255 2351 2.749621 AGGAATAGCGCCACTCTTTTTG 59.250 45.455 2.29 0.00 0.00 2.44
2259 2355 2.766828 ACTTAGGAATAGCGCCACTCTT 59.233 45.455 2.29 0.00 0.00 2.85
2266 2362 6.418585 AAAGTGTTTACTTAGGAATAGCGC 57.581 37.500 0.00 0.00 46.14 5.92
2288 2384 7.117523 ACTGGTGCGTAAACATTACGTAATTAA 59.882 33.333 18.06 1.79 42.35 1.40
2289 2385 6.589523 ACTGGTGCGTAAACATTACGTAATTA 59.410 34.615 18.06 6.89 42.35 1.40
2290 2386 5.409214 ACTGGTGCGTAAACATTACGTAATT 59.591 36.000 18.06 7.88 42.35 1.40
2291 2387 4.931002 ACTGGTGCGTAAACATTACGTAAT 59.069 37.500 15.07 15.07 42.35 1.89
2308 2404 0.877071 GCTGTCCATGTGAACTGGTG 59.123 55.000 0.00 0.00 35.19 4.17
2343 2439 5.476945 ACAGTTCACTTCACTCTTGGTTTTT 59.523 36.000 0.00 0.00 0.00 1.94
2344 2440 5.010282 ACAGTTCACTTCACTCTTGGTTTT 58.990 37.500 0.00 0.00 0.00 2.43
2345 2441 4.589908 ACAGTTCACTTCACTCTTGGTTT 58.410 39.130 0.00 0.00 0.00 3.27
2346 2442 4.222124 ACAGTTCACTTCACTCTTGGTT 57.778 40.909 0.00 0.00 0.00 3.67
2347 2443 3.914426 ACAGTTCACTTCACTCTTGGT 57.086 42.857 0.00 0.00 0.00 3.67
2348 2444 4.202264 ACCTACAGTTCACTTCACTCTTGG 60.202 45.833 0.00 0.00 0.00 3.61
2349 2445 4.950050 ACCTACAGTTCACTTCACTCTTG 58.050 43.478 0.00 0.00 0.00 3.02
2433 2529 8.517056 TGAATGACACACTTACTATACTTCGAA 58.483 33.333 0.00 0.00 0.00 3.71
3035 3188 2.360483 TGAGATCCTCTGTCATCGAAGC 59.640 50.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.