>input_sequence_60894
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---------ATCGATCCCACTCCCACGC-----TTCGTATCCTCTTCTTCCCCGCTCCCGCCGCAAACCCTTGGCATTGC
CCGGCGCCGGTCGGTGCGCTTTCCCTGGCATGGAGAGGAGCCGCGGCCACGGCAAGAACGCGCACCCGCCCCCGCTCGCG
CCGCCGCGCCGGGCGCGGGCGGAGCGCCAGCGCGCGTCCGGGTCCGGCGCGTCCTTCTCGGCCTCCCTCCTCGACACCAT
CTACCGCTCCCTCGACGA---CGGCGGCGTCGTCGACGGCGACGCCGCGCGCCGGTCGGAGGAGCAGGCGCTGGCGCCGG
CGCCGCCGCAGTTCTGGTGGGCGGGCAAGCCGAAACAGGC------CGCGGGCGCGGACAGGCGCCGCCGCGAGACGGGG
CCGGCGGTTCGCCCGCGGCACTCCGGGTACGCGTCGTCCGCCACCTCGTCGTCGGACTCGACCTCCAGCTACAGCTTCTC
CTGCTCGTCCGCCTCGACCACCGACACCGAGTCCACGTGCCGCCGGCGCAGCCCGCCCCCGCCGCGGCGCCAGCTGGAGG
AGTTCGTCGCCCCGGACAGTGTGGACGTGGCCGTGCCAGTGACAACGCCCGGCGAGAAGGCGAAGAAGAAAGGCAGGCCG
TGTTTTCCTGTCGCGAGGCACCGGCCAAGAGACGCCGCGCCGTCTTCGCCCGGGCCACCGCCGCCGTCGCCGGGGACGTT
CGCGTGCGCCCTCAAGGCTCTGTTCACCTCCGGCCGCCTCCCGAGGAAGCCCAGGACTCCGACACGCGCCCCACCTCCGC
AGACGTTGCCGGAGCTACCGCAGCCATCGTGCTTGTCGGCCGCGACGGACGCGAGCATGGCGGAGAGGAGGTGCGTGAGG
TTCTGCTCGGACGCCGAGGCGTCGGTGGTGCGGCGCAGGGTCGAGGAGCTGGTGCGGAGCCTCGGGGAGCTCGAGGAGGA
CGAGGAGGGGAGCGACTCCAGCTCCGATCTCTTCGAGCTGGAGAGCCTTGGCGGGGCGAACGGCGACGAGCTGCCCGTGT
ACGGCACCACCAGCCTCGTGGCCAATCGCGCCATCGCGCACGCGACGGTTTTCTAGGTCC-TTCGCATGCTAAAAAA---
--------------------------------------------------------------------------------
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---------------------------------------------
>chr5B_1_TraesCS5B01G206100
TTGTTTCAATAATTTTCAGTTATTTTGATTAGTTTTAAAAGTTATTTTTTGCATCTTTGATTTTTTTTAGTTTTTAGTTT
CTGACTAGTTTCGGACCGGAATTGTTTGTGAAATGATGAAAATATTATTGAATGAACAAACAAAGTCTCTGAAAAAGTTA
AGAAATATACATAGCCGTTACTAAATTTAAGAGAGAAGCATTATCAAATTTTATGACACATGTACTTCCTGAAATTTTGA
AATCATTTTTTGCTGAAAAAAACTATCATTTGTTTGAAACCTATAGTTTTAAAAAAGGAACTTTTGTGTTTTTTTTTGGA
TCTCACCAGAATTCAATTACAAAGTGTGGGGGAAATTTGGATGCATAGTGATACAGAAAAACAACTCTTAAGGTGTACAC
AGGGAGTGTGAATCTCAAAGTGCAATGAACGGCTCTAACACGTGAGAACAGAGTTTTTGATACAACATGATCCCTTTTGC
TCTGCTTTTTTGTTCCTGAAAATAAGCTGTGTAGTAAAGGAACTGGCATGAGCAACCTGTATTATCGACACCTTGCTGGA
TGACTTGACTGCCTGCCGGCCGAGGTCGGGCCCTGCGCAACTTGTCAGGCGAAGACAAAGAGTCGCCCAAGCTGGCCTCG
CCTGGTCAGGGGTCACCGTTGAGCATGAGCAGCGGCCCACTCCACTCAGTGATCCATGC------GCCGTTCAGCCGTCA
GTCCGCCGGCGCGCGGTAACATCCCGGGCGCAAATAATGCATGAT------GCCATGCACAGGACCGCAGCCGGCCACCA
CGCACGGACGTGCGGCGCGGGGAAGGGGACTGCCGGTGCCGGGGCCGGGCGAGCTTGATAATTCACCGCGCCCGAACCGG
GTT---------------GGTGGCGACGGAGAGAGAGAGATCCATCCATTGAGGATAGGCACATGCCACCGCCGCAACG-
-------------CCACCACTCCCCGGCACGCACGT----ACGCACCGACCCTATATAAACCCTCACCGCGC----ACGT
CTCGCCCTCATCGATCCCACTCCCACGC-----TTCGTATCCTCTTCTTCCCCGCTCCCGCCGCAAACCCTTGGCATTGC
CCGGCGCCGGTCGGTGCGCTTTCCCTGGCATGGAGAGGAGCCGCGGCCACGGCAAGAACGCGCACCCGCCCCCGCTCGCG
CCGCCGCGCCGGGCGCGGGCGGAGCGCCAGCGCGCGTCCGGGTCCGGCGCGTCCTTCTCGGCCTCCCTCCTCGACACCAT
CTACCGCTCCCTCGACGA---CGGCGGCGTCGTCGACGGCGACGCCGCGCGCCGGTCGGAGGAGCAGGCGCTGGCGCCGG
CGCCGCCGCAGTTCTGGTGGGCGGGCAAGCCGAAACAGGC------CGCGGGCGCGGACAGGCGCCGCCGCGAGACGGGG
CCGGCGGTTCGCCCGCGGCACTCCGGGTACGCGTCGTCCGCCACCTCGTCGTCGGACTCGACCTCCAGCTACAGCTTCTC
CTGCTCGTCCGCCTCGACCACCGACACCGAGTCCACGTGCCGCCGGCGCAGCCCGCCCCCGCCGCGGCGCCAGCTGGAGG
AGTTCGTCGCCCCGGACAGTGTGGACGTGGCCGTGCCAGTGACAACGCCCGGCGAGAAGGCGAAGAAGAAAGGCAGGCCG
TGTTTTCCTGTCGCGAGGCACCGGCCAAGAGACGCCGCGCCGTCTTCGCCCGGGCCACCGCCGCCGTCGCCGGGGACGTT
CGCGTGCGCCCTCAAGGCTCTGTTCACCTCCGGCCGCCTCCCGAGGAAGCCCAGGACTCCGACACGCGCCCCACCTCCGC
AGACGTTGCCGGAGCTACCGCAGCCATCGTGCTTGTCGGCCGCGACGGACGCGAGCATGGCGGAGAGGAGGTGCGTGAGG
TTCTGCTCGGACGCCGAGGCGTCGGTGGTGCGGCGCAGGGTCGAGGAGCTGGTGCGGAGCCTCGGGGAGCTCGAGGAGGA
CGAGGAGGGGAGCGACTCCAGCTCCGATCTCTTCGAGCTGGAGAGCCTTGGCGGGGCGAACGGCGACGAGCTGCCCGTGT
ACGGCACCACCAGCCTCGTGGCCAATCGCGCCATCGCGCACGCGACGGTTTTCTAGGTCC-TTCGCATGCTAAAAAAGGG
CAAAAGTTGTAAAAAT-TG-GAAGGACCTG-C--------------------------AACTAAAATGTTGTTGTTGCTT
GCATT-CTTCTAGTAAATCATGTTTGTATTATGTACTAAATTTGTCCAAGTCCAAAGTTTGGTTGTCCAAAATCAATTTC
AGATTCTCATGCAGAATCAATATGT-AAAACAAAAAGAGTGGCGCTATTCCTAAGTAAACACTTTAATTACGTAATGTTT
ACGCACCAGTTCACATGGACAGCCACAACAGTTAGCTAAAAAACCAAGAGTGAAGTGAACTGTAGGTCCTTAAACTATTT
CAGGGGTGTCACATAGGTTCTCAAACTATGAAAATCATCATTTAGGTCTTCGAAGTATAGTAAGTGTGTCATTCAGGTCC
AAAATCTCACTAACCCCCTCTAAATGGCCAGCTGGCATGGTGAACAGTGCGAAAAATAAAAAAATATGAACAAAAAATCT
GAAAATCTTTGGCATCGAAGATACCCCTCGTGCGTGAATAGTAAAAATGTTTGCGAACC---------------------
---ACAAAAATTCGTGACTTTTAAAGATGTTAGTGAACTTTATATTAAAGTCGCAAATAGTTTTTCCAAATTCATCGTTC
GCGAACATTTTATTAAAGTCACGAATATTTTTTCCAAATTTATCGTTCACGAACATTTTTTTAAAGTCATGAATATTGTT
TCCAAATTCATC-------GGTCGTGAATTTTTTTTAAACTCACGAATAATTTTTTAAAGTCGTGAATATTTTTCCCAAA
TTCATCGTTCGCGAACATTTCTTTAAAGTCGTGAATAATTTTTTCCAAATTCATCGTTCGCGAACTTTTTTTAAA-----
---------------GTCGCGAATA---TTTTTCCAAATTCATCGTTCGCGAACATTTTATTAAAGTCACAAATATTTTT
CCAAATTCTTCGTTCGCGA-CTTTTT-TTGAATTAATGAT-ATTTTTACTGTTCATGCGCCAGGATCGCTTCGATGACAG
AGGATCTCAGTTTTTGGATATTTTTTTATATTTATTCTTTGTCGT
>chr5D_571
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----------GCCAGCCGGCCAAAGGTCGGGCCTGCGCAACTTGTCAGGCGAAGACAAAGAGTCGCCCAGGCTGGCCTCG
CCTGGTCAGGGGTCACCGTTGAGCATGAGCAGCGGCCCACTCCACTCAGTGATCCATGC------GCCGTTCAGCCGTCC
GTCCGCCGGCGCG-----------------CAAATAATGCACGAC------GCCATGCACAGGAGCGCAGCCGGCCACCA
CGCACGGACGTGCGGCGCGGGGAAGGGGACTGCCGG--------------GACCTTGATAATTCACCGCGCCCGAACCGG
GTTTTTTTTTACCGGGTTGGTGACGACGGAGCGCGAGAGATCCATGGAAA--GGAAAGGCACATGCCACCGCCGCAACG-
-------------CCACCACTCCCCGGCACGCACGCGCGCACGCACCGACCCTATATAAACCCTCACCGCGCGCACACGT
CTCGCCCTCACCGATCCCACTCCCACGC-----TTCGTATCCTCTTCTTCCCCGCTCCCGCCGCAAACCAAT--------
-------------------------TGGCATGGAGAGGAGCCGTGGCCACGGCAAGAACGCGCACCCGCCCCCGCTCGCG
CCGCCGCGCCGGGCGCGGGCGGAGCGCGGGCGCGCGTCCGGCTCCGGCGCGTCCTTCTCGGCCTCGCTCCTCGACACCAT
CTACCGCTCCCTCGACGA---CGGCAG---CGTCGACGGCGACGCCGCGCGGCGGTCGGAGGAGAAGCCTCTGGCGCCGG
CGCCGCCGCAGTTCTGGTGGGCGGGCAAGCCGAAGCAGGGCGCGGGCGCGGGCGCGGACAGGCGCCGGCGCGAGCCGGGC
CCGGCGGTTCGCCCGCGCCACTCGGGGTACGCGTCGTCCGCCACCTCGTCGTCGGATTCCACCTCCAGCTACAGCTTCTC
CTGCTCGTCCGCCTCGACCACCGACACCGAGTCCACGTGCCGCCGGCGCAGCCCGCCCCCGCCGCGGCGCCAGCTGGAGG
AGTTCCTCGCCCCGGACAGCGCGGACGTGGCCGTGCCAGTGACGCCGCCCGGCGAGAAGGCGAAGAAGAAGGGCAGGCCG
TGTTTTCCTGTGGCGAGGCACCGGCCAAGAGACGCCGCGCCGTCTTCGCCCGGGCCGCCGCCGCCGTCGCCGGGGACGTT
CGCGTGCGTCCTCAAGGCGCTGTTCACCTCCGGCCGCCTCCCGAGGAAGCCCAGGACTCCGACACGCGCCCCGCCTCCGC
AGAAGTTGCCGGAGCTACCGCAGCCATCGTGCGTGTCGGCCGCGACGGACGCGGGCATGGCGGAGAGGAGGTGCGTGAGG
TTCTGCTCGGACGCCGAGGCGTCGGCGGTGCGGCGCAGGGTCGAGGAGCTGGTGCGGAGCCTCGGGGAGCTCGAGGAGGA
CGACGAGGGGAGCGACTCCAGCTCCGATCTCTTCGAGCTGGAGAGCCTTGGCGGGGCCAACGGCGACGAGCTGCCCGTGT
ACGGCACCACCAGCCTCGTGGCCAATCGCGCCATCGCACACGCGACGGTTTTCTAGC-CC-TTCGCATGCTGAAAAAGGG
CAAAAGTTGTAAAAAAATG-GAAGGACCTGAC--------------------------AACTAAAATGTTGTTGCTGCTT
GCATT-CTTCTAGTAAATTGTGTTTGTATTATGTGCAAAATTTGTCCGAATTCAAAGTTTGGTTGTCCAAAATCAGTTTC
AGATTCTCATGCAGAATCAATATGTGAAAAAAAATAGAGTGATGCTATTCCTAAGTAATCACT----TTACGTAATGTTT
ACGTACCAGTTCACATGGACGGC---------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------
>chr5A_571
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----------GCCAGCCGGCCAAGGTCGGGCCCTGCGCAACTTGTCAGGCGAAGACAAAGAGTCGCCCAAGCTGGCCTCT
CCTGGTCAGGGGTCACCGTTGAGCATGAGCAGCGGCCCACTCCACTCAGTGATCCATGCCCATGCGCCGTTCAGCCGTCC
GTCCGCCGGCGCG-----------------CAAATAATGCACGACGCCAATGCCATGCACAGGACCGCAGCCGGCCACCA
CGCACGGACGTGCGGT---------------------------GCCAGGCGACCTTGATAATTCACGGCGCCCGA-----
----------ACCGGGTTGGTGGCGACGGAGCGCGAGAGATCCATCCAT---GGAAAGCCACATGCCACCGCTGCACCGC
GGCAGCAACGCCACCACCACTCCCCGGCACGCACGCGCGCACGCACCGACCCTATATAAACCCTCACCGCG----CACGT
CTCGCCCTCACCGATCCCACTCCCACGCCACGCTTCGCATCCTCTTCTTCCCCGCTCCCGCCGCAAACCCTCGGCATTGC
CCGGCCCCGGTCGGCACGCGTTCCCTGGCATGGAGAGGGGCCGCGGCCACGGCAAGAGCACGCACCCGCCCCCGCTCGCG
CCGCCGCGCCGGGCGCGGGCGGAGCGCGGGCGCGCGTCCGGGTCCAGCGCGTCCTTCTCGGCCTCCCTCCTCGACACCAT
CTACCGCTCCCTCGACGATGGCGGCGG---CGCCGACGTCGACGCCGCGCGCCGGTCGGAGGAGCAGGCGCTGGCGCCCG
CGCCGCCGCAGTTCTGGTGGGCGGGCAAGCCGAAGCAGGCCGCGGGCGCGGGCGCTGACAGGCGCCGCCTCGAGACGGGC
CCGGCGGTTCGCCCGCGGCACTCCGGGTACGCGTCGTCCGCCACCTCGTCGTCCGACTCCACCTCCAGCTACAGCTTTTC
CTGCTCGTCCGCCTCCACCACCGACACTGAGTCCACGTGCCGCCGGCGCAGCCCGCCCCCGCCGCGCCGCCAGCTGGAGG
AGTTCGTCGCCCCGGACAGTGCGGACGTGGCCGCGCCAGTGACGACGCCCGGCGAGAAGGCGAAGAAGAAGGGCAGGCCG
TGTTTCCCTGTGGCGAGGCACCGGCCAAGAGACGTTGCGCCGTCCTCGCCCGGGCCGCCGCCGCCGTCGCCGGGGACGTT
CGCGTGCGTCCTCAAGGCGCTGTTCACCTCCGGCCGCCTCCCGAGGAAGCCCAGGACCCCGACGCGCGCCACGCCTCCGC
GGACGTTGCCGGAGCTACCACAGCCATCGTGCGTGTCGGCCGCGACGGACGCGAGCATGGCGGAGAGGAGGTGCGTGAGG
TTCTGCTCGGACGCCGAGGCGTCGGCTGTGCGGCGCAGGGTGGAGGAGCTGGTGCGGAGCCTCGGGGAGCTCGAGGAGGA
CGACGAGGGGAGCGACTCCAGCTCCGATCTCTTCGAGCTGGAGAGCCTTGGCGGGGCGAACGGCGACGAGCTGCCCGTGT
ACGGCACCACCAGCCTCGTGGCCAACCGCGCCATCGCGCACGCCACGGTTTTCTAGC-CCTTTCGCATGCTAAAAAAGGG
CAAAAGTTGTAAAAAT-TTCGAAGGACCTGATAACTAAAATGTTCTTTTTTTGCAAAGAACTAAAATGTTCTTGTTGCTT
GCATTTCTTCTAGTAAATCATGTTTGTATTATGTGCAAAATTTGTCTGAATTCAAAGTTTGGTTGTCCAAAATCAATTTC
AGGTTCTCACGCAGATTCAATATGTGAAAAAAAA----GTGATGCTATTCCTAACTAAACACT----TTATGTAACCTTT
ACGTACCAGTTCACATGGACA-----------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------
>chr2B_2351
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---------------------------------------------AAGAGTGAAGTGAACTGTAGGTCCTTAAACTATTT
CAGGGATGTCACATAGGTCCTCAAACTATGAAAATCGTCATTTAGGTCCTCGAAGTATAGTAAGTGTGTCATTCAGGTCC
AAAATCTCACTAACCCCCTCTAAATGGCCAGCTGGCATGGTGAACAGTACGAAAAATAAAAAAATATGAACAAAAAATCT
GAAAATCTTTGGCATCGAAGATACCCCTCGTGCGTGAATAGTAAAAATGTTTGTGAACC---------------------
---ACAAAAATTCGTGACTTTTAAAGATGTTAGTGAACTTTATATTAAAGTCGCAAATAGTTTTTCCAAATTCATCGTTC
GCGAACATTTTATTAAAGTCACGAATATTTTTTCCAAATTTATCGTTCACGAACATTTTTTTAAAGTCATGAATATTGTT
TCCAAATTCATC-------GGTCGCGAATTTTTTTTAAACTCACGAATA-ATTTTTAAAGTCGTGAATATTTTTCCCAAA
TTCATCGTTCGCGAACATTTCTTTAAAGTCGTGAATAATTTTTTCCAAATTCATCGTTCGCGAACTTTTTTTAAA-----
---------------GTCGCGAATA---TTTTTCCAAATTCATCGTTCGCGAACATTTTATTAAAGTCACAAATATTTTT
CCAAATTCTTCGTTCGCGA-CTTTTT-TTGAATTAATGAT-ATTTTTACTGTTCATGCGCCAGGATCTCTTCGATGACAG
AGGATCTCAGTTTTTGGATATTTTTTTATATTTATTCTTTGTCGT
>chr3B_2351
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---------------------------------------------AAGAGTGAAGTGAATTGTAGGTCCTTAAACTATTT
CAGGGATGTCACATAGGTCCTCAAACTATGAAAATCGTCATTTAGGTCCTCGAAGTATAGTAAGTGTGTCATTCAGGTCC
AAAATCTTACTAACCCCCTCTAAATGGCCAGCTGGCATGGTGAACAGTGCGAAAAATAAAAAAATATGAACAAAAAATCT
GAAAATCTTTGGCATTGAAGATACCCCTCGTGCGTGAATAGTAAAAATGTTTGCGAACC---------------------
---ACAAAAATTCATGACTTTTAAAGATGTTAGTGAACTTTATATTAAAGTCGCAAATAGTTTTTCCAAATTCATCGTTC
GCGAACATTTTATTAAAGTCACGAATATTTTTTCCAAATTTATCGTTCACGAACATTTTTTTAAAGTCATGAATATTGTT
TCCAAATTCATC-------GGTCGCGAATTTTTTTTAAACTCACGAATAATTTTTTAAAGTCGTGAATATTTTTCCCAAA
TTCATCGTTCGCGAACATTTCTTTAAAGTCGTGAATAATTTTTTCCAAATTCATCGTTCGCGAACTTTTTTGAAA-----
---------------GTCGCGAATA---TTTTTCCAAATTCATCGTTCGCGAACATTTTATTAAAGTCACAAATATTTTT
CCAAATTCTTCCTTCGCGA-CTTTTT-TTGAATTAATGAT-ATTTTTACTGTTCATGCGCCAGGATCTCTTCGATGACAG
AGGATCTCAGTTTTTGGATATTTGTTTATATTTATTCTTTGTTGT
>chr4B_2353
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-----------------------------------------------GAGTGAAGTGAAATGTAGGTCCTTAAACTATTT
CAGGGGTGTCACATAGGTCCTCGAACTATGAAAATCGTCATTTAGGTCCTCGAAGTATAGTAAGTGTGTCATCCAGGTCC
AAAATCTCACTAACCCCCTCTAAATGGCCAGCTGGCATGGTGAACAGTGCGAAAAGTAAAAAAATATGAACAAAAAATAT
GAAAATCTTTGGCATCAAAGATACCCCTGGTGCGTGAATAGTAAAAATGTTCATTAATTCAAAAAAATGTTCGTGAATAT
GGGAAAAATATTCGCGACTTTAAAAAAGTTCACAA------ACAATAAATTTGAAAATATGTTTGTGAACC---------
--------------------------------------------------------------------ACAAATATTGTT
CATGGGTATGGAAAAAAATGTTTGCGAACCACA------------AATATTTTTTTAAAGTCGCGAATATTTTTCCCAAA
TTCATCGTTCGCGAACATTTCTTTAAAGTCGTGAATAATTTTTTCCAAATTCATCGTTCGCGAACTTTTTTTAAA-----
---------------GTCGCGAATA--TTTTTTCCAAATTCATCGTTCGCGAACATTTTATTGAAGTCACAAATATTTTT
CCAAATTCTTCGTTCGCGAACTTTTT-TTGAATTAATGAT-ATTTTTACTGTTCATGCGCCAGGGTCTCTTCGATGACAG
AGGATCTCAGTTTTTGGATATTTTTTTATATTTATTCTTTGTCGT
>chr4B_2353
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-----------------------------------------------GAGTGAAGTGAACTGTAGGTCCTTAAACTATTT
CAGGGGTGTCACATAGGTCCTCGAACTATGAAAATCGTCATTTAGGTCCTCGAAGCATAGTAAGTGTGTCATCCAGGTCC
AAAATCTCACTAACCCCCTCTAAATGGCCAGCTGGCATGGTGAACAGTGCGAAAAATAAAAAAATATGAACAAAAAATGT
GAAAATCTTTGGCATCGAAGATACCCCTGGTGCGTGAATAGTAAAAATGTTCATTAATTCCAAAAAATGTTCGTGAATAT
GGGAAAAATATTCGCGACTTTAAAAAAGTTCACAA------ACAATAAATTTGAAAATATGTTTGCGAACC---------
--------------------------------------------------------------------ACAAATATTGTT
CGTGGGTATGGAAAAAAATGTTTGCGAACCACA------------AATATTTTTTTAAAGTCGCGAATATTTTTCCCAAA
TTCATCGTTCGCGAACATTTCTTTAAAGTCGTGAATAATTTTTTCCAAATTCATCGTTCGCGAACTTTTTTTAAA-----
---------------GTCGCGAATA--TTTTTTCCAAATTCATCGTTCGCGAACATTTTATTGAAGTCACAAATATTTTT
CCAAATTCTTCGTTCGCGAACTTTTT------------------------------------------------------
---------------------------------------------
>chr1A_2588
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------------------------------------------AAAAATGTCCGCGAACC---------------------
---ACAAAAAATCATGACTTTAAAAAATGTTACTGAACTTTTTATTAAAGTCGCAAATATTTTTTCCGAATTCATCGTTC
ACGAACATTTTATTAAAGTCACGAATATTTTTTCCAAATTCATCGTTCGCGAACATTTTTT-AAAGTAACGAATATTTTT
TCCAAATTCATC-------GTTCGCGAGCTTTTTTTAAACTCGCGAATATTTTTTTAAAGTCGCGAATATTTTTCCCAAA
TTCATCGTTCGTGAACATTTTTGTAAAGTCGTGAAT-AGTTTTTCCAAATTCATCGTTCACGAACTTTTTT-AAA-----
---------------CTCGCGAATAT-TTTTTTCCAAATTCATCGTTCGCGAACATTTTATTAAAGTCACAAATATTTTT
CCAAATTCATCGTTCGCGAACCTTTTTTTGAATTAATGACCATTTTTACTATTCACGTGCCAGGGTCTCTTCGATGACAG
AGGATCTCAGTTTTTTGATATTTTT-TATATTTTTTCTTTGTC--
>chr7A_2588
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------------------------------------------AAAAATGTCCGCGAACC---------------------
---ACAAAAAATCATGACTTTAAAAAATGTTACTGAACTTTTTATTAAAGTCGCAAATATTTTTTCCGAATTCATCGTTC
ACGAACATTTTATTAAAGTCATGAATATTTTTTCCAAATTCATCGTTCGCGAACATTTTTT-AAAGTAACAAATATTATT
TCCAAATTCATC-------GTTCGCGAGCTTTTTTTAAACTCGCGAATATTTTTTTAAAGTCGCGAATATTTTTCCCAAA
TTCATCGTTCGCGAACATTTTTGTAAAGTCATGAAT-AGTTTTTCCAAATTCATCGTTCACGAACTTTTTTTAAA-----
---------------CTCGCGAATATTTTTTTTCCAAATTCATCGTTCGTGAACATTTTATTAAAGTCACAAATATTTTT
CCAAATTCATCGTTCGCGAACCTTTTTTTGAATTAATGACCATTTTTACTATTCACGTGCCAGGGTCTCTTCGATGACAG
AGGATCTCAGTTTTTTGATATTTTT-TATATTTTTTCTTTGTC--
>chr6B_2588
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------------------------------------------AAAAATGTCCGCGAACC---------------------
---ACAAAAAATCATGACTTTAAAAAATGTTACTGAACTTTTTATTAAAGTCGCAAATATTTTTTCCGAATTCATCGTTC
ACGAACATTTTATTAAAGTCACGAATATTTTTTCCAAATTCATCGTTCGCGAACATTTTTT-AAAGTAACGAATATTTTT
TCCAAATTCTTC-------GTTCGCGAGCTTTTTTTAAACTCGCGAATATTTTTTTAAAGTCGCGAATATTTTTCCCAAA
TTCATCGTTCGTGAACATTTTTGTAAAGTCGTGAAT-AGTTTTTCCAAATTCATCGTTCACGAACTTTTTT-AAA-----
---------------CTCGCGAATAT-TTTTTTCCAAATTCATCGTTCGCGAACATTTTATTAAAGTCATAAATATTTTT
CCAAATTCATCGTTCACGAACCTTTTTTTGAATTAATGACCATTTTTACTATTCACGTGCCAGGGTCTCTTCGATGACAG
AGGATCTCAGTTTTTTGATATTTTT-TATATTTTTTCTTTGTC--
>chr3A_2588
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------------------------------------------AAAAATGTTCGCGAACC---------------------
---ACAAAAATTCGTGACTTCAAAAAATGTTAGTGAACTTTTCAT---AGTCGCAAATATTTTTTCCAAATTCATCGCTC
GCGAACATTTTATTAAAGTCACGAATATTTTTTCCAAATTCATCATTCGCAAACATTTTTTTAAAGTCATGAATATTTTT
TCCAAATTCATC-------GTTCGCGAACTTTTTTTAAACTCGCGAATA-TTTTTTAAAGTCGCGAATATTTTTCCAAAA
TTCATCGTTCGCGAACATTTTTTTAAAGTCGTGAAT-ATTTTTTCCAAATTCATCGTTCGCGAACTTTTTTTAAACTCGC
GAATATTTTTTTGAAGTCGCGAATA--TTTTTTCCAAATTCATCGTTCGCGAACATTTTATTAAAGTCACAAATATTTTT
TCAAATTCATCCTTCGCGAA-CTTTTTCTGAATTAATGACCATTTTTACTATTCACGCGCCAGGGTCTCTTCGATGACAG
AGGATCTCATTTTTTTGATTTTTTT-AATATTTATTCTTTGTCGT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS---S-------S----------------------------------------------------------
-------------------------------------------------------------------------------S
-------------SSSSSSSSSSSSSSSSS-----------S--S-----------------------------------
------------------------------------SSSSSSS---S-----S---------------------------
-------------------------------S-S---------------SSS---S------------------------
-----------------------------------S--------------------------------------------
----------S---------------------------------------------------------------------
-----S--------SS---S------------------------------------------------------------
---------------------------SS---------------------------------------------------
---------------------------SSS--------------------------------------------------
----------------------------------S--------------------------------------------S
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
---------------------S---------------------S--------------------------S---------
-----------S--------------------------------------------S-----------------------
--------S---------S-----------------------------------------------------S-------
--------------------------------S-----------------------------------------------
-------------------------S------------------------------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------SS----------------------
--------------------------------------------------------------------------------
----------------------------------S-S----------S-S-S----------------------------
------------------------------S---S------SS--------------------SSSS-------------
---S-------------------SSSSSSSSSSSSSSSSSSSSSS-----------------------------------
------------------S-----------------S-----------S-------------------------------
--------------------------------------------------------------------------------
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------------------------S-------------------------------------------------------
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-------------------------------------------------------------------S------------
---------------------------------------------
>forward_574
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--------------------------------------------------------------------------GCTGGA
TGACTTGACTGCCT------------------------------------------------------------------
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>reverse_1769
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--------CCCTCAAGGCTCTGTTCACC----------------------------------------------------
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---------------------------------------------
>forward_1671
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------GCGAGAAGGCGAAGAAGAAA---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
>reverse_3188
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------GCTTCGATGACAG
AGGATCTCA------------------------------------
