Multiple sequence alignment - TraesCS5B01G203000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G203000 chr5B 100.000 2240 0 0 1 2240 369364324 369366563 0.000000e+00 4137.0
1 TraesCS5B01G203000 chr5D 88.765 1620 101 34 158 1735 319207581 319209161 0.000000e+00 1908.0
2 TraesCS5B01G203000 chr5D 94.763 401 20 1 1741 2140 255469895 255469495 6.790000e-175 623.0
3 TraesCS5B01G203000 chr5D 93.350 406 26 1 1734 2138 460403636 460404041 1.140000e-167 599.0
4 TraesCS5B01G203000 chr5A 85.108 1296 82 33 512 1741 415194128 415192878 0.000000e+00 1221.0
5 TraesCS5B01G203000 chr5A 85.165 364 40 10 158 512 415199710 415199352 5.880000e-96 361.0
6 TraesCS5B01G203000 chr2D 93.705 413 20 6 1740 2147 562578276 562577865 4.090000e-172 614.0
7 TraesCS5B01G203000 chr2D 94.000 400 23 1 1740 2138 293156093 293156492 2.460000e-169 604.0
8 TraesCS5B01G203000 chr2B 93.253 415 28 0 1734 2148 550658826 550658412 1.470000e-171 612.0
9 TraesCS5B01G203000 chr1D 94.236 399 22 1 1741 2138 144940776 144940378 1.900000e-170 608.0
10 TraesCS5B01G203000 chr1D 93.046 417 23 6 1736 2148 94047964 94047550 2.460000e-169 604.0
11 TraesCS5B01G203000 chr1D 94.000 400 23 1 1740 2138 432697238 432697637 2.460000e-169 604.0
12 TraesCS5B01G203000 chr3D 92.788 416 27 3 1734 2147 8717572 8717158 1.140000e-167 599.0
13 TraesCS5B01G203000 chr7D 94.737 38 2 0 3 40 34314182 34314219 2.400000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G203000 chr5B 369364324 369366563 2239 False 4137 4137 100.000 1 2240 1 chr5B.!!$F1 2239
1 TraesCS5B01G203000 chr5D 319207581 319209161 1580 False 1908 1908 88.765 158 1735 1 chr5D.!!$F1 1577
2 TraesCS5B01G203000 chr5A 415192878 415194128 1250 True 1221 1221 85.108 512 1741 1 chr5A.!!$R1 1229

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 325 0.036306 AAACTTCATCGAAGCGGGGT 59.964 50.0 3.67 0.0 42.79 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1817 1911 0.030235 GGGCGTCACACAAAAAGGTC 59.97 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.429359 AGTAGTTAATGAAGAGAGATGTTTGTG 57.571 33.333 0.00 0.00 0.00 3.33
27 28 7.678947 AGTTAATGAAGAGAGATGTTTGTGG 57.321 36.000 0.00 0.00 0.00 4.17
28 29 7.227156 AGTTAATGAAGAGAGATGTTTGTGGT 58.773 34.615 0.00 0.00 0.00 4.16
29 30 8.375506 AGTTAATGAAGAGAGATGTTTGTGGTA 58.624 33.333 0.00 0.00 0.00 3.25
30 31 8.443937 GTTAATGAAGAGAGATGTTTGTGGTAC 58.556 37.037 0.00 0.00 0.00 3.34
31 32 4.894784 TGAAGAGAGATGTTTGTGGTACC 58.105 43.478 4.43 4.43 0.00 3.34
32 33 3.594603 AGAGAGATGTTTGTGGTACCG 57.405 47.619 7.57 0.00 0.00 4.02
33 34 2.897969 AGAGAGATGTTTGTGGTACCGT 59.102 45.455 7.57 0.00 0.00 4.83
34 35 4.084287 AGAGAGATGTTTGTGGTACCGTA 58.916 43.478 7.57 0.00 0.00 4.02
35 36 4.525487 AGAGAGATGTTTGTGGTACCGTAA 59.475 41.667 7.57 1.71 0.00 3.18
36 37 4.563061 AGAGATGTTTGTGGTACCGTAAC 58.437 43.478 7.57 11.39 0.00 2.50
37 38 4.039488 AGAGATGTTTGTGGTACCGTAACA 59.961 41.667 21.29 21.29 33.73 2.41
38 39 4.901868 AGATGTTTGTGGTACCGTAACAT 58.098 39.130 26.28 26.28 40.88 2.71
39 40 6.040209 AGATGTTTGTGGTACCGTAACATA 57.960 37.500 26.14 12.28 38.97 2.29
40 41 6.465948 AGATGTTTGTGGTACCGTAACATAA 58.534 36.000 26.14 13.00 38.97 1.90
41 42 5.921004 TGTTTGTGGTACCGTAACATAAC 57.079 39.130 17.40 15.93 0.00 1.89
42 43 4.447054 TGTTTGTGGTACCGTAACATAACG 59.553 41.667 17.40 0.00 42.49 3.18
43 44 3.932545 TGTGGTACCGTAACATAACGT 57.067 42.857 7.57 0.00 41.27 3.99
44 45 4.250116 TGTGGTACCGTAACATAACGTT 57.750 40.909 5.88 5.88 41.27 3.99
45 46 4.626042 TGTGGTACCGTAACATAACGTTT 58.374 39.130 5.91 0.00 41.27 3.60
46 47 5.053145 TGTGGTACCGTAACATAACGTTTT 58.947 37.500 5.91 0.00 41.27 2.43
47 48 5.176590 TGTGGTACCGTAACATAACGTTTTC 59.823 40.000 5.91 0.00 41.27 2.29
48 49 5.405269 GTGGTACCGTAACATAACGTTTTCT 59.595 40.000 5.91 0.00 41.27 2.52
49 50 6.584563 GTGGTACCGTAACATAACGTTTTCTA 59.415 38.462 5.91 0.00 41.27 2.10
50 51 7.115663 GTGGTACCGTAACATAACGTTTTCTAA 59.884 37.037 5.91 0.00 41.27 2.10
51 52 7.328249 TGGTACCGTAACATAACGTTTTCTAAG 59.672 37.037 5.91 0.00 41.27 2.18
52 53 7.540745 GGTACCGTAACATAACGTTTTCTAAGA 59.459 37.037 5.91 0.00 41.27 2.10
53 54 7.572502 ACCGTAACATAACGTTTTCTAAGAG 57.427 36.000 5.91 0.00 41.27 2.85
54 55 7.370383 ACCGTAACATAACGTTTTCTAAGAGA 58.630 34.615 5.91 0.00 41.27 3.10
55 56 7.867403 ACCGTAACATAACGTTTTCTAAGAGAA 59.133 33.333 5.91 0.00 41.27 2.87
56 57 8.371053 CCGTAACATAACGTTTTCTAAGAGAAG 58.629 37.037 5.91 0.00 41.27 2.85
57 58 9.121517 CGTAACATAACGTTTTCTAAGAGAAGA 57.878 33.333 5.91 0.00 39.14 2.87
60 61 7.965045 ACATAACGTTTTCTAAGAGAAGATGC 58.035 34.615 5.91 0.00 35.37 3.91
61 62 5.517037 AACGTTTTCTAAGAGAAGATGCG 57.483 39.130 0.00 0.00 35.37 4.73
62 63 4.557205 ACGTTTTCTAAGAGAAGATGCGT 58.443 39.130 0.00 0.00 35.37 5.24
63 64 4.621886 ACGTTTTCTAAGAGAAGATGCGTC 59.378 41.667 0.00 0.00 35.37 5.19
64 65 4.859798 CGTTTTCTAAGAGAAGATGCGTCT 59.140 41.667 1.48 1.48 35.37 4.18
65 66 5.220117 CGTTTTCTAAGAGAAGATGCGTCTG 60.220 44.000 9.75 0.00 35.37 3.51
66 67 3.428746 TCTAAGAGAAGATGCGTCTGC 57.571 47.619 9.75 7.67 43.20 4.26
67 68 3.020274 TCTAAGAGAAGATGCGTCTGCT 58.980 45.455 16.90 16.90 43.44 4.24
68 69 4.200092 TCTAAGAGAAGATGCGTCTGCTA 58.800 43.478 16.91 0.40 40.66 3.49
69 70 3.435105 AAGAGAAGATGCGTCTGCTAG 57.565 47.619 16.91 0.00 40.66 3.42
70 71 1.066908 AGAGAAGATGCGTCTGCTAGC 59.933 52.381 16.91 8.10 40.66 3.42
71 72 1.066908 GAGAAGATGCGTCTGCTAGCT 59.933 52.381 16.91 5.90 40.66 3.32
72 73 2.292016 GAGAAGATGCGTCTGCTAGCTA 59.708 50.000 16.91 0.72 40.66 3.32
73 74 2.690497 AGAAGATGCGTCTGCTAGCTAA 59.310 45.455 15.35 0.35 38.67 3.09
74 75 3.320541 AGAAGATGCGTCTGCTAGCTAAT 59.679 43.478 15.35 0.00 38.67 1.73
75 76 4.520874 AGAAGATGCGTCTGCTAGCTAATA 59.479 41.667 15.35 0.00 38.67 0.98
76 77 4.855715 AGATGCGTCTGCTAGCTAATAA 57.144 40.909 17.23 0.00 43.34 1.40
77 78 5.201713 AGATGCGTCTGCTAGCTAATAAA 57.798 39.130 17.23 0.00 43.34 1.40
78 79 5.788450 AGATGCGTCTGCTAGCTAATAAAT 58.212 37.500 17.23 3.32 43.34 1.40
79 80 6.925211 AGATGCGTCTGCTAGCTAATAAATA 58.075 36.000 17.23 0.00 43.34 1.40
80 81 7.378966 AGATGCGTCTGCTAGCTAATAAATAA 58.621 34.615 17.23 0.00 43.34 1.40
81 82 7.872993 AGATGCGTCTGCTAGCTAATAAATAAA 59.127 33.333 17.23 0.00 43.34 1.40
82 83 7.780008 TGCGTCTGCTAGCTAATAAATAAAA 57.220 32.000 17.23 0.00 43.34 1.52
83 84 8.378172 TGCGTCTGCTAGCTAATAAATAAAAT 57.622 30.769 17.23 0.00 43.34 1.82
84 85 8.495949 TGCGTCTGCTAGCTAATAAATAAAATC 58.504 33.333 17.23 0.00 43.34 2.17
85 86 8.495949 GCGTCTGCTAGCTAATAAATAAAATCA 58.504 33.333 17.23 0.00 38.39 2.57
134 135 7.473027 TTTGCAGTATAAAGGTACTAATCGC 57.527 36.000 0.00 0.00 38.49 4.58
135 136 6.401047 TGCAGTATAAAGGTACTAATCGCT 57.599 37.500 0.00 0.00 38.49 4.93
136 137 6.812998 TGCAGTATAAAGGTACTAATCGCTT 58.187 36.000 0.00 0.00 38.49 4.68
137 138 7.944061 TGCAGTATAAAGGTACTAATCGCTTA 58.056 34.615 0.00 0.00 38.49 3.09
138 139 8.415553 TGCAGTATAAAGGTACTAATCGCTTAA 58.584 33.333 0.00 0.00 38.49 1.85
139 140 9.252962 GCAGTATAAAGGTACTAATCGCTTAAA 57.747 33.333 0.00 0.00 38.49 1.52
141 142 9.755804 AGTATAAAGGTACTAATCGCTTAAACC 57.244 33.333 0.00 3.22 38.49 3.27
142 143 9.533253 GTATAAAGGTACTAATCGCTTAAACCA 57.467 33.333 10.94 0.00 38.49 3.67
143 144 6.980051 AAAGGTACTAATCGCTTAAACCAG 57.020 37.500 10.94 0.00 38.49 4.00
144 145 4.439968 AGGTACTAATCGCTTAAACCAGC 58.560 43.478 10.94 0.00 36.02 4.85
153 154 2.987046 GCTTAAACCAGCGTCATATGC 58.013 47.619 0.00 0.00 0.00 3.14
154 155 2.354510 GCTTAAACCAGCGTCATATGCA 59.645 45.455 0.00 0.00 31.07 3.96
155 156 3.003689 GCTTAAACCAGCGTCATATGCAT 59.996 43.478 3.79 3.79 31.07 3.96
156 157 4.530388 CTTAAACCAGCGTCATATGCATG 58.470 43.478 10.16 0.00 31.07 4.06
178 179 7.363793 GCATGACTTGTTTAATTTACTCCCCAT 60.364 37.037 0.00 0.00 0.00 4.00
185 186 8.528044 TGTTTAATTTACTCCCCATTATGACC 57.472 34.615 0.00 0.00 0.00 4.02
193 194 3.127250 TCCCCATTATGACCAGCCTAAA 58.873 45.455 0.00 0.00 0.00 1.85
225 227 7.609532 CCTGAAGAAGTCTATGGAAATGTCTTT 59.390 37.037 0.00 0.00 0.00 2.52
226 228 8.553459 TGAAGAAGTCTATGGAAATGTCTTTC 57.447 34.615 0.00 0.00 40.09 2.62
227 229 8.378565 TGAAGAAGTCTATGGAAATGTCTTTCT 58.621 33.333 0.00 0.00 40.55 2.52
228 230 9.225436 GAAGAAGTCTATGGAAATGTCTTTCTT 57.775 33.333 0.00 0.00 40.55 2.52
229 231 8.558973 AGAAGTCTATGGAAATGTCTTTCTTG 57.441 34.615 0.00 0.00 40.55 3.02
230 232 8.160106 AGAAGTCTATGGAAATGTCTTTCTTGT 58.840 33.333 0.00 0.00 40.55 3.16
255 257 6.732154 AGAATCTGCAAATATCAAACGATGG 58.268 36.000 0.00 0.00 0.00 3.51
285 288 4.712476 GATGTAATCACCCATTCTGCTCT 58.288 43.478 0.00 0.00 44.70 4.09
293 296 3.760151 CACCCATTCTGCTCTGAAATTCA 59.240 43.478 0.00 0.00 0.00 2.57
297 300 5.184479 CCCATTCTGCTCTGAAATTCAAGAA 59.816 40.000 9.44 9.44 0.00 2.52
300 303 7.817962 CCATTCTGCTCTGAAATTCAAGAAATT 59.182 33.333 10.66 0.00 39.30 1.82
302 305 7.281040 TCTGCTCTGAAATTCAAGAAATTGT 57.719 32.000 0.00 0.00 37.64 2.71
305 308 9.467258 CTGCTCTGAAATTCAAGAAATTGTAAA 57.533 29.630 0.00 0.00 37.64 2.01
306 309 9.248291 TGCTCTGAAATTCAAGAAATTGTAAAC 57.752 29.630 0.00 0.00 37.64 2.01
319 322 4.600012 ATTGTAAACTTCATCGAAGCGG 57.400 40.909 3.67 0.00 42.79 5.52
320 323 2.343101 TGTAAACTTCATCGAAGCGGG 58.657 47.619 3.67 0.00 42.79 6.13
322 325 0.036306 AAACTTCATCGAAGCGGGGT 59.964 50.000 3.67 0.00 42.79 4.95
323 326 0.036306 AACTTCATCGAAGCGGGGTT 59.964 50.000 3.67 0.00 42.79 4.11
332 335 3.236003 AAGCGGGGTTCACTCGACC 62.236 63.158 0.00 0.00 36.41 4.79
340 343 1.142097 TTCACTCGACCGTGTTGCA 59.858 52.632 4.89 0.00 36.33 4.08
345 348 0.108804 CTCGACCGTGTTGCATAGGT 60.109 55.000 3.09 3.09 40.11 3.08
351 354 2.833338 ACCGTGTTGCATAGGTACCTTA 59.167 45.455 22.11 6.64 34.83 2.69
358 361 5.121105 GTTGCATAGGTACCTTACGGAAAT 58.879 41.667 22.11 1.99 0.00 2.17
360 363 6.482898 TGCATAGGTACCTTACGGAAATAA 57.517 37.500 22.11 0.00 0.00 1.40
362 365 7.337167 TGCATAGGTACCTTACGGAAATAAAA 58.663 34.615 22.11 0.00 0.00 1.52
363 366 7.828223 TGCATAGGTACCTTACGGAAATAAAAA 59.172 33.333 22.11 0.00 0.00 1.94
364 367 8.124823 GCATAGGTACCTTACGGAAATAAAAAC 58.875 37.037 22.11 0.00 0.00 2.43
367 370 6.881065 AGGTACCTTACGGAAATAAAAACTCC 59.119 38.462 9.21 0.00 0.00 3.85
409 412 2.430694 GGTTTTGGTTCAGGAGCACTTT 59.569 45.455 0.00 0.00 35.04 2.66
411 414 1.691196 TTGGTTCAGGAGCACTTTGG 58.309 50.000 0.00 0.00 35.04 3.28
426 434 6.273071 AGCACTTTGGTTATTGTTCTTGTTC 58.727 36.000 0.00 0.00 0.00 3.18
430 438 8.621286 CACTTTGGTTATTGTTCTTGTTCTAGT 58.379 33.333 0.00 0.00 0.00 2.57
433 441 9.796120 TTTGGTTATTGTTCTTGTTCTAGTTTG 57.204 29.630 0.00 0.00 0.00 2.93
441 449 6.315393 TGTTCTTGTTCTAGTTTGAGGTTGTC 59.685 38.462 0.00 0.00 0.00 3.18
443 451 6.281405 TCTTGTTCTAGTTTGAGGTTGTCTC 58.719 40.000 0.00 0.00 42.74 3.36
492 500 5.248248 TGAGTTGATCAGTAACCCAATCAGA 59.752 40.000 0.00 0.00 32.77 3.27
497 505 5.604231 TGATCAGTAACCCAATCAGATAGCT 59.396 40.000 0.00 0.00 0.00 3.32
501 509 1.051812 ACCCAATCAGATAGCTCCCG 58.948 55.000 0.00 0.00 0.00 5.14
568 579 4.392940 CTCTCTTTGTGTCCCTGACATTT 58.607 43.478 0.00 0.00 44.63 2.32
575 586 1.156736 GTCCCTGACATTTGTCCACG 58.843 55.000 8.16 0.00 44.15 4.94
594 605 1.213094 GACCACCATATCCGTTCGCG 61.213 60.000 0.00 0.00 40.93 5.87
745 782 2.251371 GCAGTTGAAACGGCGACC 59.749 61.111 16.62 2.05 40.06 4.79
866 927 7.359849 TCCTCCATACCTACCGCTATATAAAT 58.640 38.462 0.00 0.00 0.00 1.40
916 977 3.259064 CTTCACCGATCACCAATACGTT 58.741 45.455 0.00 0.00 0.00 3.99
947 1008 4.082571 GGTGCAGCAGATTAACAATTCAGT 60.083 41.667 11.86 0.00 0.00 3.41
948 1009 5.464168 GTGCAGCAGATTAACAATTCAGTT 58.536 37.500 0.00 0.00 35.55 3.16
949 1010 5.570589 GTGCAGCAGATTAACAATTCAGTTC 59.429 40.000 0.00 0.00 33.07 3.01
950 1011 4.790140 GCAGCAGATTAACAATTCAGTTCG 59.210 41.667 0.00 0.00 33.07 3.95
951 1012 5.617751 GCAGCAGATTAACAATTCAGTTCGT 60.618 40.000 0.00 0.00 33.07 3.85
981 1047 2.821366 GCGTGCTCCATGGTGAGG 60.821 66.667 17.98 9.17 32.81 3.86
1252 1330 2.496817 CCTAGTCACCTCGCCTGC 59.503 66.667 0.00 0.00 0.00 4.85
1273 1351 1.595382 GGCCAGGCAGCGTATACAG 60.595 63.158 15.19 0.00 0.00 2.74
1274 1352 1.144057 GCCAGGCAGCGTATACAGT 59.856 57.895 6.55 0.00 0.00 3.55
1275 1353 0.876342 GCCAGGCAGCGTATACAGTC 60.876 60.000 6.55 0.00 0.00 3.51
1276 1354 0.595053 CCAGGCAGCGTATACAGTCG 60.595 60.000 3.32 0.00 0.00 4.18
1318 1396 4.709397 AGCGAGCTATATATTTGAGAGCCT 59.291 41.667 0.00 0.00 33.50 4.58
1326 1404 7.916450 GCTATATATTTGAGAGCCTTAGTACGG 59.084 40.741 0.00 0.00 0.00 4.02
1376 1456 3.741075 CGTGCATGGAACCAGAGCTTATA 60.741 47.826 17.35 0.76 33.79 0.98
1431 1515 6.594159 TGTTTCAGTCGACTTTTCTTCTTCTT 59.406 34.615 17.26 0.00 0.00 2.52
1505 1590 3.198635 TCTTCCATGCTAGTTCCTTCAGG 59.801 47.826 0.00 0.00 0.00 3.86
1514 1599 4.509600 GCTAGTTCCTTCAGGATTGATTCG 59.490 45.833 0.00 0.00 44.98 3.34
1524 1609 5.419542 TCAGGATTGATTCGATTCTTCGTT 58.580 37.500 8.63 0.00 45.65 3.85
1525 1610 5.874810 TCAGGATTGATTCGATTCTTCGTTT 59.125 36.000 8.63 0.00 45.65 3.60
1533 1618 3.840468 TCGATTCTTCGTTTGATTCGGA 58.160 40.909 14.03 0.00 45.65 4.55
1553 1638 2.919666 ATGGAAATCCGCAGAAAACG 57.080 45.000 0.00 0.00 39.43 3.60
1576 1661 1.536709 GGCAAATCGGGCATGTCATTC 60.537 52.381 0.00 0.00 0.00 2.67
1580 1665 0.466189 ATCGGGCATGTCATTCCCAC 60.466 55.000 19.20 0.00 40.05 4.61
1581 1666 1.077501 CGGGCATGTCATTCCCACT 60.078 57.895 19.20 0.00 40.05 4.00
1622 1711 2.735772 AACGGCCAGCGGATGAGAT 61.736 57.895 2.24 0.00 0.00 2.75
1624 1713 2.824546 GGCCAGCGGATGAGATGA 59.175 61.111 0.00 0.00 0.00 2.92
1712 1806 5.301805 TCCGCATGTGTATCTTCTCAGAATA 59.698 40.000 5.38 0.00 30.76 1.75
1737 1831 1.777101 GAGATACGCATCTGTCAGGC 58.223 55.000 1.98 0.00 41.78 4.85
1741 1835 1.960040 TACGCATCTGTCAGGCAGGG 61.960 60.000 1.12 0.00 45.08 4.45
1742 1836 2.827642 GCATCTGTCAGGCAGGGC 60.828 66.667 1.12 2.93 45.08 5.19
1743 1837 2.672908 CATCTGTCAGGCAGGGCA 59.327 61.111 1.12 0.00 45.08 5.36
1744 1838 1.001764 CATCTGTCAGGCAGGGCAA 60.002 57.895 1.12 0.00 45.08 4.52
1745 1839 0.609957 CATCTGTCAGGCAGGGCAAA 60.610 55.000 1.12 0.00 45.08 3.68
1746 1840 0.333993 ATCTGTCAGGCAGGGCAAAT 59.666 50.000 1.12 0.00 45.08 2.32
1747 1841 0.112995 TCTGTCAGGCAGGGCAAATT 59.887 50.000 1.12 0.00 45.08 1.82
1748 1842 0.971386 CTGTCAGGCAGGGCAAATTT 59.029 50.000 0.00 0.00 41.42 1.82
1749 1843 0.680618 TGTCAGGCAGGGCAAATTTG 59.319 50.000 14.03 14.03 0.00 2.32
1750 1844 0.968405 GTCAGGCAGGGCAAATTTGA 59.032 50.000 22.31 0.00 0.00 2.69
1751 1845 0.968405 TCAGGCAGGGCAAATTTGAC 59.032 50.000 22.31 19.34 34.70 3.18
1752 1846 0.680618 CAGGCAGGGCAAATTTGACA 59.319 50.000 25.05 0.00 38.18 3.58
1753 1847 1.070445 CAGGCAGGGCAAATTTGACAA 59.930 47.619 25.05 0.00 38.18 3.18
1754 1848 1.767681 AGGCAGGGCAAATTTGACAAA 59.232 42.857 25.05 2.48 38.18 2.83
1755 1849 2.372837 AGGCAGGGCAAATTTGACAAAT 59.627 40.909 25.05 7.62 38.18 2.32
1756 1850 3.148412 GGCAGGGCAAATTTGACAAATT 58.852 40.909 25.05 18.41 42.62 1.82
1758 1852 4.759183 GGCAGGGCAAATTTGACAAATTTA 59.241 37.500 29.34 0.00 46.34 1.40
1759 1853 5.240403 GGCAGGGCAAATTTGACAAATTTAA 59.760 36.000 29.34 0.00 46.34 1.52
1760 1854 6.142139 GCAGGGCAAATTTGACAAATTTAAC 58.858 36.000 29.34 24.33 46.34 2.01
1761 1855 6.667370 CAGGGCAAATTTGACAAATTTAACC 58.333 36.000 29.34 29.36 46.34 2.85
1762 1856 6.486320 CAGGGCAAATTTGACAAATTTAACCT 59.514 34.615 31.35 31.35 46.34 3.50
1763 1857 7.659390 CAGGGCAAATTTGACAAATTTAACCTA 59.341 33.333 33.47 6.75 46.34 3.08
1764 1858 8.382405 AGGGCAAATTTGACAAATTTAACCTAT 58.618 29.630 33.31 25.52 46.34 2.57
1765 1859 9.660180 GGGCAAATTTGACAAATTTAACCTATA 57.340 29.630 31.84 4.60 46.34 1.31
1795 1889 9.727627 GAAATCAAATCACAGAATGAACTATCC 57.272 33.333 0.00 0.00 41.93 2.59
1796 1890 6.908870 TCAAATCACAGAATGAACTATCCG 57.091 37.500 0.00 0.00 41.93 4.18
1797 1891 6.406370 TCAAATCACAGAATGAACTATCCGT 58.594 36.000 0.00 0.00 41.93 4.69
1798 1892 7.552459 TCAAATCACAGAATGAACTATCCGTA 58.448 34.615 0.00 0.00 41.93 4.02
1799 1893 8.038351 TCAAATCACAGAATGAACTATCCGTAA 58.962 33.333 0.00 0.00 41.93 3.18
1800 1894 8.664798 CAAATCACAGAATGAACTATCCGTAAA 58.335 33.333 0.00 0.00 41.93 2.01
1801 1895 8.786826 AATCACAGAATGAACTATCCGTAAAA 57.213 30.769 0.00 0.00 41.93 1.52
1802 1896 7.591006 TCACAGAATGAACTATCCGTAAAAC 57.409 36.000 0.00 0.00 39.69 2.43
1803 1897 7.383687 TCACAGAATGAACTATCCGTAAAACT 58.616 34.615 0.00 0.00 39.69 2.66
1804 1898 8.525316 TCACAGAATGAACTATCCGTAAAACTA 58.475 33.333 0.00 0.00 39.69 2.24
1805 1899 9.314321 CACAGAATGAACTATCCGTAAAACTAT 57.686 33.333 0.00 0.00 39.69 2.12
1806 1900 9.886132 ACAGAATGAACTATCCGTAAAACTATT 57.114 29.630 0.00 0.00 39.69 1.73
1811 1905 8.176814 TGAACTATCCGTAAAACTATTTCACG 57.823 34.615 0.00 0.00 0.00 4.35
1812 1906 6.579491 ACTATCCGTAAAACTATTTCACGC 57.421 37.500 0.00 0.00 30.82 5.34
1813 1907 3.976468 TCCGTAAAACTATTTCACGCG 57.024 42.857 3.53 3.53 30.82 6.01
1814 1908 2.667481 TCCGTAAAACTATTTCACGCGG 59.333 45.455 12.47 0.00 34.24 6.46
1815 1909 2.424341 CGTAAAACTATTTCACGCGGC 58.576 47.619 12.47 0.00 0.00 6.53
1816 1910 2.093152 CGTAAAACTATTTCACGCGGCT 59.907 45.455 12.47 0.00 0.00 5.52
1817 1911 2.611974 AAAACTATTTCACGCGGCTG 57.388 45.000 12.47 0.00 0.00 4.85
1818 1912 1.803334 AAACTATTTCACGCGGCTGA 58.197 45.000 12.47 2.44 0.00 4.26
1819 1913 1.076332 AACTATTTCACGCGGCTGAC 58.924 50.000 12.47 0.00 0.00 3.51
1820 1914 0.739813 ACTATTTCACGCGGCTGACC 60.740 55.000 12.47 0.00 0.00 4.02
1821 1915 0.460284 CTATTTCACGCGGCTGACCT 60.460 55.000 12.47 0.00 0.00 3.85
1822 1916 0.036765 TATTTCACGCGGCTGACCTT 60.037 50.000 12.47 0.00 0.00 3.50
1823 1917 0.889186 ATTTCACGCGGCTGACCTTT 60.889 50.000 12.47 0.00 0.00 3.11
1824 1918 1.098712 TTTCACGCGGCTGACCTTTT 61.099 50.000 12.47 0.00 0.00 2.27
1825 1919 1.098712 TTCACGCGGCTGACCTTTTT 61.099 50.000 12.47 0.00 0.00 1.94
1826 1920 1.370414 CACGCGGCTGACCTTTTTG 60.370 57.895 12.47 0.00 0.00 2.44
1827 1921 1.822186 ACGCGGCTGACCTTTTTGT 60.822 52.632 12.47 0.00 0.00 2.83
1828 1922 1.370414 CGCGGCTGACCTTTTTGTG 60.370 57.895 0.00 0.00 0.00 3.33
1829 1923 1.733526 GCGGCTGACCTTTTTGTGT 59.266 52.632 0.00 0.00 0.00 3.72
1830 1924 0.594796 GCGGCTGACCTTTTTGTGTG 60.595 55.000 0.00 0.00 0.00 3.82
1831 1925 1.021202 CGGCTGACCTTTTTGTGTGA 58.979 50.000 0.00 0.00 0.00 3.58
1832 1926 1.268539 CGGCTGACCTTTTTGTGTGAC 60.269 52.381 0.00 0.00 0.00 3.67
1833 1927 1.268539 GGCTGACCTTTTTGTGTGACG 60.269 52.381 0.00 0.00 0.00 4.35
1834 1928 1.859998 GCTGACCTTTTTGTGTGACGC 60.860 52.381 0.00 0.00 0.00 5.19
1835 1929 0.736053 TGACCTTTTTGTGTGACGCC 59.264 50.000 0.00 0.00 0.00 5.68
1836 1930 0.030235 GACCTTTTTGTGTGACGCCC 59.970 55.000 0.00 0.00 0.00 6.13
1837 1931 1.008995 CCTTTTTGTGTGACGCCCG 60.009 57.895 0.00 0.00 0.00 6.13
1838 1932 1.440938 CCTTTTTGTGTGACGCCCGA 61.441 55.000 0.00 0.00 0.00 5.14
1839 1933 0.316689 CTTTTTGTGTGACGCCCGAC 60.317 55.000 0.00 0.00 0.00 4.79
1840 1934 1.025113 TTTTTGTGTGACGCCCGACA 61.025 50.000 0.00 0.00 0.00 4.35
1841 1935 1.707239 TTTTGTGTGACGCCCGACAC 61.707 55.000 14.47 14.47 42.40 3.67
1842 1936 4.934942 TGTGTGACGCCCGACACG 62.935 66.667 15.80 0.00 44.55 4.49
1843 1937 4.634133 GTGTGACGCCCGACACGA 62.634 66.667 15.80 5.46 42.06 4.35
1844 1938 3.902086 TGTGACGCCCGACACGAA 61.902 61.111 15.80 0.31 42.06 3.85
1845 1939 3.103911 GTGACGCCCGACACGAAG 61.104 66.667 7.43 0.00 32.16 3.79
1846 1940 4.351938 TGACGCCCGACACGAAGG 62.352 66.667 0.00 0.00 0.00 3.46
1854 1948 3.712881 GACACGAAGGCGCCACAC 61.713 66.667 31.54 17.81 42.48 3.82
1855 1949 4.235762 ACACGAAGGCGCCACACT 62.236 61.111 31.54 9.96 42.48 3.55
1856 1950 2.048597 CACGAAGGCGCCACACTA 60.049 61.111 31.54 0.00 42.48 2.74
1857 1951 2.048503 ACGAAGGCGCCACACTAC 60.049 61.111 31.54 11.50 42.48 2.73
1858 1952 2.048597 CGAAGGCGCCACACTACA 60.049 61.111 31.54 0.00 0.00 2.74
1859 1953 2.380410 CGAAGGCGCCACACTACAC 61.380 63.158 31.54 8.98 0.00 2.90
1860 1954 1.004918 GAAGGCGCCACACTACACT 60.005 57.895 31.54 0.00 0.00 3.55
1861 1955 1.291877 GAAGGCGCCACACTACACTG 61.292 60.000 31.54 0.00 0.00 3.66
1862 1956 2.030562 GGCGCCACACTACACTGT 59.969 61.111 24.80 0.00 0.00 3.55
1863 1957 2.317609 GGCGCCACACTACACTGTG 61.318 63.158 24.80 6.19 41.19 3.66
1864 1958 2.954753 GCGCCACACTACACTGTGC 61.955 63.158 7.90 0.00 40.33 4.57
1865 1959 1.594021 CGCCACACTACACTGTGCA 60.594 57.895 7.90 0.00 40.33 4.57
1866 1960 1.157257 CGCCACACTACACTGTGCAA 61.157 55.000 7.90 0.00 40.33 4.08
1867 1961 0.307760 GCCACACTACACTGTGCAAC 59.692 55.000 7.90 0.00 40.33 4.17
1868 1962 0.581529 CCACACTACACTGTGCAACG 59.418 55.000 7.90 0.00 42.39 4.10
1869 1963 0.042188 CACACTACACTGTGCAACGC 60.042 55.000 7.90 0.00 42.39 4.84
1870 1964 1.157870 ACACTACACTGTGCAACGCC 61.158 55.000 7.90 0.00 42.39 5.68
1871 1965 0.880278 CACTACACTGTGCAACGCCT 60.880 55.000 7.90 0.00 42.39 5.52
1872 1966 0.600255 ACTACACTGTGCAACGCCTC 60.600 55.000 7.90 0.00 42.39 4.70
1873 1967 0.599991 CTACACTGTGCAACGCCTCA 60.600 55.000 7.90 0.00 42.39 3.86
1874 1968 0.878523 TACACTGTGCAACGCCTCAC 60.879 55.000 7.90 0.00 42.39 3.51
1875 1969 2.179547 CACTGTGCAACGCCTCACA 61.180 57.895 0.00 4.54 42.39 3.58
1877 1971 2.503546 TGTGCAACGCCTCACAGA 59.496 55.556 0.00 0.00 42.39 3.41
1878 1972 1.071299 TGTGCAACGCCTCACAGAT 59.929 52.632 0.00 0.00 42.39 2.90
1879 1973 0.320050 TGTGCAACGCCTCACAGATA 59.680 50.000 0.00 0.00 42.39 1.98
1880 1974 1.002366 GTGCAACGCCTCACAGATAG 58.998 55.000 0.00 0.00 33.63 2.08
1881 1975 0.108186 TGCAACGCCTCACAGATAGG 60.108 55.000 0.00 0.00 37.17 2.57
1887 1981 3.875838 CCTCACAGATAGGCGCTAC 57.124 57.895 7.64 0.00 0.00 3.58
1888 1982 1.032794 CCTCACAGATAGGCGCTACA 58.967 55.000 7.64 0.00 0.00 2.74
1889 1983 1.269309 CCTCACAGATAGGCGCTACAC 60.269 57.143 7.64 0.00 0.00 2.90
1890 1984 0.744874 TCACAGATAGGCGCTACACC 59.255 55.000 7.64 0.00 0.00 4.16
1891 1985 0.595053 CACAGATAGGCGCTACACCG 60.595 60.000 7.64 0.00 0.00 4.94
1926 2020 7.956420 ACACGTGTGATCAGAAAATTACTAA 57.044 32.000 22.71 0.00 0.00 2.24
1927 2021 8.018677 ACACGTGTGATCAGAAAATTACTAAG 57.981 34.615 22.71 0.00 0.00 2.18
1928 2022 7.656137 ACACGTGTGATCAGAAAATTACTAAGT 59.344 33.333 22.71 0.00 0.00 2.24
1929 2023 8.162880 CACGTGTGATCAGAAAATTACTAAGTC 58.837 37.037 7.58 0.00 0.00 3.01
1930 2024 7.061905 ACGTGTGATCAGAAAATTACTAAGTCG 59.938 37.037 0.00 0.00 0.00 4.18
1931 2025 7.061905 CGTGTGATCAGAAAATTACTAAGTCGT 59.938 37.037 0.00 0.00 0.00 4.34
1932 2026 8.162880 GTGTGATCAGAAAATTACTAAGTCGTG 58.837 37.037 0.00 0.00 0.00 4.35
1933 2027 7.870954 TGTGATCAGAAAATTACTAAGTCGTGT 59.129 33.333 0.00 0.00 0.00 4.49
1934 2028 8.162880 GTGATCAGAAAATTACTAAGTCGTGTG 58.837 37.037 0.00 0.00 0.00 3.82
1935 2029 6.462073 TCAGAAAATTACTAAGTCGTGTGC 57.538 37.500 0.00 0.00 0.00 4.57
1936 2030 5.986741 TCAGAAAATTACTAAGTCGTGTGCA 59.013 36.000 0.00 0.00 0.00 4.57
1937 2031 6.145534 TCAGAAAATTACTAAGTCGTGTGCAG 59.854 38.462 0.00 0.00 0.00 4.41
1938 2032 4.663636 AAATTACTAAGTCGTGTGCAGC 57.336 40.909 0.00 0.00 0.00 5.25
1939 2033 1.693467 TTACTAAGTCGTGTGCAGCG 58.307 50.000 4.41 4.41 0.00 5.18
1940 2034 0.731514 TACTAAGTCGTGTGCAGCGC 60.732 55.000 0.00 0.00 0.00 5.92
1941 2035 2.730672 CTAAGTCGTGTGCAGCGCC 61.731 63.158 2.29 0.00 0.00 6.53
1942 2036 3.220999 TAAGTCGTGTGCAGCGCCT 62.221 57.895 2.29 0.00 0.00 5.52
1947 2041 3.117171 GTGTGCAGCGCCTGAGAG 61.117 66.667 2.29 0.00 32.44 3.20
1954 2048 2.025441 GCGCCTGAGAGCTAGACG 59.975 66.667 0.00 0.00 35.67 4.18
1955 2049 2.025441 CGCCTGAGAGCTAGACGC 59.975 66.667 0.00 0.00 39.57 5.19
1956 2050 2.415426 GCCTGAGAGCTAGACGCC 59.585 66.667 0.00 0.00 40.39 5.68
1957 2051 2.418910 GCCTGAGAGCTAGACGCCA 61.419 63.158 0.00 0.00 40.39 5.69
1958 2052 1.435515 CCTGAGAGCTAGACGCCAC 59.564 63.158 0.00 0.00 40.39 5.01
1959 2053 1.315981 CCTGAGAGCTAGACGCCACA 61.316 60.000 0.00 0.00 40.39 4.17
1960 2054 0.179150 CTGAGAGCTAGACGCCACAC 60.179 60.000 0.00 0.00 40.39 3.82
1961 2055 0.609406 TGAGAGCTAGACGCCACACT 60.609 55.000 0.00 0.00 40.39 3.55
1962 2056 1.339727 TGAGAGCTAGACGCCACACTA 60.340 52.381 0.00 0.00 40.39 2.74
1963 2057 1.950909 GAGAGCTAGACGCCACACTAT 59.049 52.381 0.00 0.00 40.39 2.12
1964 2058 3.139850 GAGAGCTAGACGCCACACTATA 58.860 50.000 0.00 0.00 40.39 1.31
1965 2059 2.879646 AGAGCTAGACGCCACACTATAC 59.120 50.000 0.00 0.00 40.39 1.47
1966 2060 2.617308 GAGCTAGACGCCACACTATACA 59.383 50.000 0.00 0.00 40.39 2.29
1967 2061 2.619177 AGCTAGACGCCACACTATACAG 59.381 50.000 0.00 0.00 40.39 2.74
1968 2062 2.358267 GCTAGACGCCACACTATACAGT 59.642 50.000 0.00 0.00 34.42 3.55
1979 2073 4.148563 CACTATACAGTGTAGCGCCTAG 57.851 50.000 2.29 7.59 46.03 3.02
1980 2074 2.553172 ACTATACAGTGTAGCGCCTAGC 59.447 50.000 2.29 0.00 38.99 3.42
1981 2075 3.748027 ACTATACAGTGTAGCGCCTAGCT 60.748 47.826 2.29 0.00 46.39 3.32
1982 2076 5.572865 ACTATACAGTGTAGCGCCTAGCTC 61.573 50.000 2.29 0.00 43.12 4.09
1993 2087 1.068250 CCTAGCTCCTAGGCGTTGC 59.932 63.158 2.96 5.87 45.64 4.17
1994 2088 1.676678 CCTAGCTCCTAGGCGTTGCA 61.677 60.000 2.96 0.00 45.64 4.08
1995 2089 0.528684 CTAGCTCCTAGGCGTTGCAC 60.529 60.000 2.96 0.00 37.29 4.57
1996 2090 0.970937 TAGCTCCTAGGCGTTGCACT 60.971 55.000 2.96 0.00 37.29 4.40
1997 2091 0.970937 AGCTCCTAGGCGTTGCACTA 60.971 55.000 2.96 0.00 37.29 2.74
1998 2092 0.528684 GCTCCTAGGCGTTGCACTAG 60.529 60.000 2.96 2.78 37.12 2.57
1999 2093 0.818296 CTCCTAGGCGTTGCACTAGT 59.182 55.000 2.96 0.00 35.93 2.57
2000 2094 0.530744 TCCTAGGCGTTGCACTAGTG 59.469 55.000 18.93 18.93 35.93 2.74
2010 2104 4.409342 CACTAGTGCAGCGCCTAG 57.591 61.111 10.54 14.52 36.35 3.02
2025 2119 1.195115 CCTAGCTCCTAGGTGTTGCA 58.805 55.000 9.08 0.00 46.15 4.08
2026 2120 1.134670 CCTAGCTCCTAGGTGTTGCAC 60.135 57.143 9.08 0.00 46.15 4.57
2027 2121 1.827969 CTAGCTCCTAGGTGTTGCACT 59.172 52.381 9.08 1.08 34.40 4.40
2028 2122 1.938585 AGCTCCTAGGTGTTGCACTA 58.061 50.000 9.08 0.00 34.40 2.74
2029 2123 1.827969 AGCTCCTAGGTGTTGCACTAG 59.172 52.381 9.08 2.78 34.40 2.57
2030 2124 1.550976 GCTCCTAGGTGTTGCACTAGT 59.449 52.381 9.08 0.00 34.40 2.57
2031 2125 2.675317 GCTCCTAGGTGTTGCACTAGTG 60.675 54.545 18.93 18.93 34.40 2.74
2042 2136 3.027312 CACTAGTGCAGCGTCTGAG 57.973 57.895 10.54 2.45 32.44 3.35
2043 2137 0.523519 CACTAGTGCAGCGTCTGAGA 59.476 55.000 10.54 0.00 32.44 3.27
2044 2138 0.808125 ACTAGTGCAGCGTCTGAGAG 59.192 55.000 10.46 4.43 32.44 3.20
2045 2139 0.525242 CTAGTGCAGCGTCTGAGAGC 60.525 60.000 10.46 0.00 32.44 4.09
2046 2140 0.962855 TAGTGCAGCGTCTGAGAGCT 60.963 55.000 10.46 2.17 45.74 4.09
2047 2141 0.962855 AGTGCAGCGTCTGAGAGCTA 60.963 55.000 10.46 0.00 42.52 3.32
2048 2142 0.525242 GTGCAGCGTCTGAGAGCTAG 60.525 60.000 10.46 4.47 42.52 3.42
2049 2143 1.065600 GCAGCGTCTGAGAGCTAGG 59.934 63.158 10.46 0.00 42.52 3.02
2050 2144 1.065600 CAGCGTCTGAGAGCTAGGC 59.934 63.158 7.17 0.00 42.52 3.93
2051 2145 2.025441 GCGTCTGAGAGCTAGGCG 59.975 66.667 4.62 4.62 45.39 5.52
2052 2146 2.025441 CGTCTGAGAGCTAGGCGC 59.975 66.667 0.00 0.00 36.41 6.53
2053 2147 2.415426 GTCTGAGAGCTAGGCGCC 59.585 66.667 21.89 21.89 40.39 6.53
2054 2148 2.043953 TCTGAGAGCTAGGCGCCA 60.044 61.111 31.54 14.00 40.39 5.69
2055 2149 2.105930 CTGAGAGCTAGGCGCCAC 59.894 66.667 31.54 17.93 40.39 5.01
2056 2150 3.764810 CTGAGAGCTAGGCGCCACG 62.765 68.421 31.54 19.97 40.39 4.94
2057 2151 4.577246 GAGAGCTAGGCGCCACGG 62.577 72.222 31.54 18.60 40.39 4.94
2059 2153 3.917760 GAGCTAGGCGCCACGGAT 61.918 66.667 31.54 16.75 40.39 4.18
2060 2154 3.850095 GAGCTAGGCGCCACGGATC 62.850 68.421 31.54 21.14 40.39 3.36
2061 2155 4.221422 GCTAGGCGCCACGGATCA 62.221 66.667 31.54 2.99 0.00 2.92
2062 2156 2.028190 CTAGGCGCCACGGATCAG 59.972 66.667 31.54 9.46 0.00 2.90
2063 2157 4.221422 TAGGCGCCACGGATCAGC 62.221 66.667 31.54 0.00 0.00 4.26
2073 2167 3.813596 GGATCAGCCGCGTGAAAT 58.186 55.556 4.92 0.00 0.00 2.17
2074 2168 2.986311 GGATCAGCCGCGTGAAATA 58.014 52.632 4.92 0.00 0.00 1.40
2075 2169 0.861837 GGATCAGCCGCGTGAAATAG 59.138 55.000 4.92 0.00 0.00 1.73
2076 2170 1.571919 GATCAGCCGCGTGAAATAGT 58.428 50.000 4.92 0.00 0.00 2.12
2077 2171 1.933853 GATCAGCCGCGTGAAATAGTT 59.066 47.619 4.92 0.00 0.00 2.24
2078 2172 1.803334 TCAGCCGCGTGAAATAGTTT 58.197 45.000 4.92 0.00 0.00 2.66
2079 2173 2.147958 TCAGCCGCGTGAAATAGTTTT 58.852 42.857 4.92 0.00 0.00 2.43
2080 2174 3.327626 TCAGCCGCGTGAAATAGTTTTA 58.672 40.909 4.92 0.00 0.00 1.52
2081 2175 3.123959 TCAGCCGCGTGAAATAGTTTTAC 59.876 43.478 4.92 0.00 0.00 2.01
2091 2185 8.176814 CGTGAAATAGTTTTACGGATAGTTCA 57.823 34.615 10.64 0.00 45.34 3.18
2092 2186 8.814235 CGTGAAATAGTTTTACGGATAGTTCAT 58.186 33.333 10.64 0.00 45.34 2.57
2137 2231 9.213799 TCATAGGTTAAATTTGTCAATTTTGCC 57.786 29.630 13.29 13.79 39.19 4.52
2138 2232 6.538189 AGGTTAAATTTGTCAATTTTGCCG 57.462 33.333 13.29 0.00 39.19 5.69
2139 2233 6.052360 AGGTTAAATTTGTCAATTTTGCCGT 58.948 32.000 13.29 5.12 39.19 5.68
2140 2234 6.201997 AGGTTAAATTTGTCAATTTTGCCGTC 59.798 34.615 13.29 2.65 39.19 4.79
2141 2235 6.018669 GGTTAAATTTGTCAATTTTGCCGTCA 60.019 34.615 13.29 0.00 39.19 4.35
2142 2236 5.655893 AAATTTGTCAATTTTGCCGTCAG 57.344 34.783 4.96 0.00 39.19 3.51
2143 2237 2.791383 TTGTCAATTTTGCCGTCAGG 57.209 45.000 0.00 0.00 41.62 3.86
2144 2238 6.983971 AAATTTGTCAATTTTGCCGTCAGGC 61.984 40.000 2.03 2.03 46.71 4.85
2153 2247 4.537433 CCGTCAGGCAGGCTAGGC 62.537 72.222 8.55 8.55 0.00 3.93
2154 2248 3.774528 CGTCAGGCAGGCTAGGCA 61.775 66.667 19.70 0.00 36.37 4.75
2155 2249 2.124942 GTCAGGCAGGCTAGGCAC 60.125 66.667 19.70 9.89 36.37 5.01
2156 2250 3.774528 TCAGGCAGGCTAGGCACG 61.775 66.667 19.70 10.15 36.37 5.34
2157 2251 4.087892 CAGGCAGGCTAGGCACGT 62.088 66.667 19.70 8.80 36.37 4.49
2158 2252 4.087892 AGGCAGGCTAGGCACGTG 62.088 66.667 19.70 12.28 36.37 4.49
2160 2254 4.394712 GCAGGCTAGGCACGTGGT 62.395 66.667 18.88 0.00 0.00 4.16
2161 2255 2.347490 CAGGCTAGGCACGTGGTT 59.653 61.111 18.88 0.00 0.00 3.67
2162 2256 2.034879 CAGGCTAGGCACGTGGTTG 61.035 63.158 18.88 1.89 0.00 3.77
2163 2257 2.214216 AGGCTAGGCACGTGGTTGA 61.214 57.895 18.88 0.00 0.00 3.18
2164 2258 1.302192 GGCTAGGCACGTGGTTGAA 60.302 57.895 18.88 0.00 0.00 2.69
2165 2259 1.298859 GGCTAGGCACGTGGTTGAAG 61.299 60.000 18.88 0.00 0.00 3.02
2166 2260 1.298859 GCTAGGCACGTGGTTGAAGG 61.299 60.000 18.88 0.00 0.00 3.46
2167 2261 1.298859 CTAGGCACGTGGTTGAAGGC 61.299 60.000 18.88 0.89 0.00 4.35
2168 2262 2.741486 TAGGCACGTGGTTGAAGGCC 62.741 60.000 18.88 9.55 41.65 5.19
2169 2263 4.025401 GCACGTGGTTGAAGGCCG 62.025 66.667 18.88 0.00 0.00 6.13
2170 2264 3.353836 CACGTGGTTGAAGGCCGG 61.354 66.667 7.95 0.00 0.00 6.13
2171 2265 3.552384 ACGTGGTTGAAGGCCGGA 61.552 61.111 5.05 0.00 0.00 5.14
2172 2266 2.742372 CGTGGTTGAAGGCCGGAG 60.742 66.667 5.05 0.00 0.00 4.63
2173 2267 3.056328 GTGGTTGAAGGCCGGAGC 61.056 66.667 5.05 0.00 38.76 4.70
2174 2268 4.697756 TGGTTGAAGGCCGGAGCG 62.698 66.667 5.05 0.00 41.24 5.03
2175 2269 4.699522 GGTTGAAGGCCGGAGCGT 62.700 66.667 5.05 0.00 41.24 5.07
2176 2270 2.263540 GTTGAAGGCCGGAGCGTA 59.736 61.111 5.05 0.00 41.24 4.42
2177 2271 1.810030 GTTGAAGGCCGGAGCGTAG 60.810 63.158 5.05 0.00 41.24 3.51
2195 2289 3.587095 CGTAGACACGCAGGAGGA 58.413 61.111 0.00 0.00 42.05 3.71
2196 2290 1.429825 CGTAGACACGCAGGAGGAG 59.570 63.158 0.00 0.00 42.05 3.69
2197 2291 1.139947 GTAGACACGCAGGAGGAGC 59.860 63.158 0.00 0.00 0.00 4.70
2198 2292 1.304134 TAGACACGCAGGAGGAGCA 60.304 57.895 0.00 0.00 0.00 4.26
2199 2293 1.595993 TAGACACGCAGGAGGAGCAC 61.596 60.000 0.00 0.00 0.00 4.40
2200 2294 2.919856 ACACGCAGGAGGAGCACT 60.920 61.111 0.00 0.00 0.00 4.40
2201 2295 2.125753 CACGCAGGAGGAGCACTC 60.126 66.667 0.16 0.16 45.84 3.51
2208 2302 4.996976 GAGGAGCACTCGAAGCAA 57.003 55.556 11.54 0.00 36.29 3.91
2209 2303 2.450619 GAGGAGCACTCGAAGCAAC 58.549 57.895 11.54 4.34 36.29 4.17
2210 2304 0.319900 GAGGAGCACTCGAAGCAACA 60.320 55.000 11.54 0.00 36.29 3.33
2211 2305 0.320247 AGGAGCACTCGAAGCAACAG 60.320 55.000 11.54 0.00 0.00 3.16
2212 2306 1.495069 GAGCACTCGAAGCAACAGC 59.505 57.895 11.54 0.00 0.00 4.40
2213 2307 2.171940 GCACTCGAAGCAACAGCG 59.828 61.111 4.76 0.00 0.00 5.18
2214 2308 2.856032 CACTCGAAGCAACAGCGG 59.144 61.111 0.00 0.00 0.00 5.52
2215 2309 3.044305 ACTCGAAGCAACAGCGGC 61.044 61.111 0.00 0.00 0.00 6.53
2216 2310 4.139420 CTCGAAGCAACAGCGGCG 62.139 66.667 0.51 0.51 36.08 6.46
2229 2323 2.717485 CGGCGCTGCAGCAATAAT 59.283 55.556 36.03 0.00 42.21 1.28
2230 2324 1.064621 CGGCGCTGCAGCAATAATT 59.935 52.632 36.03 0.00 42.21 1.40
2231 2325 0.931662 CGGCGCTGCAGCAATAATTC 60.932 55.000 36.03 15.99 42.21 2.17
2232 2326 0.101040 GGCGCTGCAGCAATAATTCA 59.899 50.000 36.03 0.00 42.21 2.57
2233 2327 1.469595 GGCGCTGCAGCAATAATTCAA 60.470 47.619 36.03 0.00 42.21 2.69
2234 2328 1.585214 GCGCTGCAGCAATAATTCAAC 59.415 47.619 36.03 9.54 42.21 3.18
2235 2329 2.187707 CGCTGCAGCAATAATTCAACC 58.812 47.619 36.03 4.30 42.21 3.77
2236 2330 2.543641 GCTGCAGCAATAATTCAACCC 58.456 47.619 33.36 0.00 41.59 4.11
2237 2331 2.094078 GCTGCAGCAATAATTCAACCCA 60.094 45.455 33.36 0.00 41.59 4.51
2238 2332 3.777478 CTGCAGCAATAATTCAACCCAG 58.223 45.455 0.00 0.00 0.00 4.45
2239 2333 3.164268 TGCAGCAATAATTCAACCCAGT 58.836 40.909 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.429359 CACAAACATCTCTCTTCATTAACTACT 57.571 33.333 0.00 0.00 0.00 2.57
1 2 8.660373 CCACAAACATCTCTCTTCATTAACTAC 58.340 37.037 0.00 0.00 0.00 2.73
2 3 8.375506 ACCACAAACATCTCTCTTCATTAACTA 58.624 33.333 0.00 0.00 0.00 2.24
3 4 7.227156 ACCACAAACATCTCTCTTCATTAACT 58.773 34.615 0.00 0.00 0.00 2.24
4 5 7.440523 ACCACAAACATCTCTCTTCATTAAC 57.559 36.000 0.00 0.00 0.00 2.01
5 6 7.606456 GGTACCACAAACATCTCTCTTCATTAA 59.394 37.037 7.15 0.00 0.00 1.40
6 7 7.103641 GGTACCACAAACATCTCTCTTCATTA 58.896 38.462 7.15 0.00 0.00 1.90
7 8 5.940470 GGTACCACAAACATCTCTCTTCATT 59.060 40.000 7.15 0.00 0.00 2.57
8 9 5.491982 GGTACCACAAACATCTCTCTTCAT 58.508 41.667 7.15 0.00 0.00 2.57
9 10 4.560716 CGGTACCACAAACATCTCTCTTCA 60.561 45.833 13.54 0.00 0.00 3.02
10 11 3.927142 CGGTACCACAAACATCTCTCTTC 59.073 47.826 13.54 0.00 0.00 2.87
11 12 3.323979 ACGGTACCACAAACATCTCTCTT 59.676 43.478 13.54 0.00 0.00 2.85
12 13 2.897969 ACGGTACCACAAACATCTCTCT 59.102 45.455 13.54 0.00 0.00 3.10
13 14 3.314541 ACGGTACCACAAACATCTCTC 57.685 47.619 13.54 0.00 0.00 3.20
14 15 4.039488 TGTTACGGTACCACAAACATCTCT 59.961 41.667 13.54 0.00 0.00 3.10
15 16 4.309099 TGTTACGGTACCACAAACATCTC 58.691 43.478 13.54 0.00 0.00 2.75
16 17 4.339872 TGTTACGGTACCACAAACATCT 57.660 40.909 13.54 0.00 0.00 2.90
17 18 6.536688 GTTATGTTACGGTACCACAAACATC 58.463 40.000 27.12 16.83 40.32 3.06
18 19 5.120519 CGTTATGTTACGGTACCACAAACAT 59.879 40.000 26.76 26.76 42.00 2.71
19 20 4.447054 CGTTATGTTACGGTACCACAAACA 59.553 41.667 20.00 20.00 37.86 2.83
20 21 4.447389 ACGTTATGTTACGGTACCACAAAC 59.553 41.667 13.54 12.62 45.44 2.93
21 22 4.626042 ACGTTATGTTACGGTACCACAAA 58.374 39.130 13.54 0.00 45.44 2.83
22 23 4.250116 ACGTTATGTTACGGTACCACAA 57.750 40.909 13.54 1.54 45.44 3.33
23 24 3.932545 ACGTTATGTTACGGTACCACA 57.067 42.857 13.54 9.43 45.44 4.17
24 25 5.405269 AGAAAACGTTATGTTACGGTACCAC 59.595 40.000 13.54 3.07 41.29 4.16
25 26 5.537188 AGAAAACGTTATGTTACGGTACCA 58.463 37.500 13.54 0.00 41.29 3.25
26 27 7.540745 TCTTAGAAAACGTTATGTTACGGTACC 59.459 37.037 0.00 0.16 41.29 3.34
27 28 8.447787 TCTTAGAAAACGTTATGTTACGGTAC 57.552 34.615 0.00 0.00 41.29 3.34
28 29 8.511321 TCTCTTAGAAAACGTTATGTTACGGTA 58.489 33.333 0.00 0.00 41.29 4.02
29 30 7.370383 TCTCTTAGAAAACGTTATGTTACGGT 58.630 34.615 0.00 0.00 44.63 4.83
30 31 7.801547 TCTCTTAGAAAACGTTATGTTACGG 57.198 36.000 0.00 0.00 45.44 4.02
31 32 9.121517 TCTTCTCTTAGAAAACGTTATGTTACG 57.878 33.333 0.00 0.00 40.84 3.18
34 35 8.443937 GCATCTTCTCTTAGAAAACGTTATGTT 58.556 33.333 0.00 0.00 44.59 2.71
35 36 7.201444 CGCATCTTCTCTTAGAAAACGTTATGT 60.201 37.037 0.00 0.00 33.19 2.29
36 37 7.113658 CGCATCTTCTCTTAGAAAACGTTATG 58.886 38.462 0.00 0.00 33.19 1.90
37 38 6.812160 ACGCATCTTCTCTTAGAAAACGTTAT 59.188 34.615 0.00 0.00 33.19 1.89
38 39 6.154445 ACGCATCTTCTCTTAGAAAACGTTA 58.846 36.000 0.00 0.00 33.19 3.18
39 40 4.989168 ACGCATCTTCTCTTAGAAAACGTT 59.011 37.500 0.00 0.00 33.19 3.99
40 41 4.557205 ACGCATCTTCTCTTAGAAAACGT 58.443 39.130 0.00 0.00 33.19 3.99
41 42 4.859798 AGACGCATCTTCTCTTAGAAAACG 59.140 41.667 0.00 0.00 33.19 3.60
42 43 5.445275 GCAGACGCATCTTCTCTTAGAAAAC 60.445 44.000 0.00 0.00 33.97 2.43
43 44 4.627467 GCAGACGCATCTTCTCTTAGAAAA 59.373 41.667 0.00 0.00 33.97 2.29
44 45 4.081972 AGCAGACGCATCTTCTCTTAGAAA 60.082 41.667 0.00 0.00 42.27 2.52
45 46 3.445450 AGCAGACGCATCTTCTCTTAGAA 59.555 43.478 0.00 0.00 42.27 2.10
46 47 3.020274 AGCAGACGCATCTTCTCTTAGA 58.980 45.455 0.00 0.00 42.27 2.10
47 48 3.435105 AGCAGACGCATCTTCTCTTAG 57.565 47.619 0.00 0.00 42.27 2.18
48 49 3.243234 GCTAGCAGACGCATCTTCTCTTA 60.243 47.826 10.63 0.00 42.27 2.10
49 50 2.481104 GCTAGCAGACGCATCTTCTCTT 60.481 50.000 10.63 0.00 42.27 2.85
50 51 1.066908 GCTAGCAGACGCATCTTCTCT 59.933 52.381 10.63 0.00 42.27 3.10
51 52 1.066908 AGCTAGCAGACGCATCTTCTC 59.933 52.381 18.83 0.00 42.27 2.87
52 53 1.110442 AGCTAGCAGACGCATCTTCT 58.890 50.000 18.83 0.00 42.27 2.85
53 54 2.783828 TAGCTAGCAGACGCATCTTC 57.216 50.000 18.83 0.00 42.27 2.87
54 55 3.742433 ATTAGCTAGCAGACGCATCTT 57.258 42.857 18.83 0.00 42.27 2.40
55 56 4.855715 TTATTAGCTAGCAGACGCATCT 57.144 40.909 18.83 0.00 42.27 2.90
56 57 7.582435 TTATTTATTAGCTAGCAGACGCATC 57.418 36.000 18.83 0.00 42.27 3.91
57 58 7.962964 TTTATTTATTAGCTAGCAGACGCAT 57.037 32.000 18.83 4.67 42.27 4.73
58 59 7.780008 TTTTATTTATTAGCTAGCAGACGCA 57.220 32.000 18.83 0.00 42.27 5.24
59 60 8.495949 TGATTTTATTTATTAGCTAGCAGACGC 58.504 33.333 18.83 0.00 38.99 5.19
108 109 8.557029 GCGATTAGTACCTTTATACTGCAAAAT 58.443 33.333 0.00 0.00 36.09 1.82
109 110 7.767198 AGCGATTAGTACCTTTATACTGCAAAA 59.233 33.333 0.00 0.00 36.09 2.44
110 111 7.270047 AGCGATTAGTACCTTTATACTGCAAA 58.730 34.615 0.00 0.00 36.09 3.68
111 112 6.812998 AGCGATTAGTACCTTTATACTGCAA 58.187 36.000 0.00 0.00 36.09 4.08
112 113 6.401047 AGCGATTAGTACCTTTATACTGCA 57.599 37.500 0.00 0.00 36.09 4.41
113 114 8.807667 TTAAGCGATTAGTACCTTTATACTGC 57.192 34.615 0.00 0.00 36.09 4.40
115 116 9.755804 GGTTTAAGCGATTAGTACCTTTATACT 57.244 33.333 15.50 0.00 38.89 2.12
116 117 9.533253 TGGTTTAAGCGATTAGTACCTTTATAC 57.467 33.333 20.44 0.00 0.00 1.47
117 118 9.754382 CTGGTTTAAGCGATTAGTACCTTTATA 57.246 33.333 20.44 6.19 0.00 0.98
118 119 7.226128 GCTGGTTTAAGCGATTAGTACCTTTAT 59.774 37.037 20.44 0.00 32.56 1.40
119 120 6.536224 GCTGGTTTAAGCGATTAGTACCTTTA 59.464 38.462 20.44 6.70 32.56 1.85
120 121 5.353400 GCTGGTTTAAGCGATTAGTACCTTT 59.647 40.000 20.44 0.00 32.56 3.11
121 122 4.874396 GCTGGTTTAAGCGATTAGTACCTT 59.126 41.667 20.44 1.76 32.56 3.50
122 123 4.439968 GCTGGTTTAAGCGATTAGTACCT 58.560 43.478 20.44 0.00 32.56 3.08
123 124 4.790810 GCTGGTTTAAGCGATTAGTACC 57.209 45.455 15.77 15.77 32.56 3.34
133 134 2.354510 TGCATATGACGCTGGTTTAAGC 59.645 45.455 6.97 0.00 39.94 3.09
134 135 4.273235 TCATGCATATGACGCTGGTTTAAG 59.727 41.667 6.97 0.00 38.37 1.85
135 136 4.195416 TCATGCATATGACGCTGGTTTAA 58.805 39.130 6.97 0.00 38.37 1.52
136 137 3.802866 TCATGCATATGACGCTGGTTTA 58.197 40.909 6.97 0.00 38.37 2.01
137 138 2.642427 TCATGCATATGACGCTGGTTT 58.358 42.857 6.97 0.00 38.37 3.27
138 139 2.330440 TCATGCATATGACGCTGGTT 57.670 45.000 6.97 0.00 38.37 3.67
149 150 8.682710 GGGAGTAAATTAAACAAGTCATGCATA 58.317 33.333 0.00 0.00 0.00 3.14
150 151 7.363793 GGGGAGTAAATTAAACAAGTCATGCAT 60.364 37.037 0.00 0.00 0.00 3.96
151 152 6.071616 GGGGAGTAAATTAAACAAGTCATGCA 60.072 38.462 0.00 0.00 0.00 3.96
152 153 6.071616 TGGGGAGTAAATTAAACAAGTCATGC 60.072 38.462 0.00 0.00 0.00 4.06
153 154 7.461182 TGGGGAGTAAATTAAACAAGTCATG 57.539 36.000 0.00 0.00 0.00 3.07
154 155 8.664669 AATGGGGAGTAAATTAAACAAGTCAT 57.335 30.769 0.00 0.00 0.00 3.06
155 156 9.762381 ATAATGGGGAGTAAATTAAACAAGTCA 57.238 29.630 0.00 0.00 0.00 3.41
160 161 8.116669 TGGTCATAATGGGGAGTAAATTAAACA 58.883 33.333 0.00 0.00 0.00 2.83
170 171 0.846693 GGCTGGTCATAATGGGGAGT 59.153 55.000 0.00 0.00 0.00 3.85
173 174 3.593442 TTTAGGCTGGTCATAATGGGG 57.407 47.619 0.00 0.00 0.00 4.96
197 198 6.784031 ACATTTCCATAGACTTCTTCAGGTT 58.216 36.000 0.00 0.00 0.00 3.50
198 199 6.214412 AGACATTTCCATAGACTTCTTCAGGT 59.786 38.462 0.00 0.00 0.00 4.00
199 200 6.648192 AGACATTTCCATAGACTTCTTCAGG 58.352 40.000 0.00 0.00 0.00 3.86
202 203 8.785329 AGAAAGACATTTCCATAGACTTCTTC 57.215 34.615 0.00 0.00 45.01 2.87
213 214 7.094634 GCAGATTCTACAAGAAAGACATTTCCA 60.095 37.037 0.00 0.00 45.01 3.53
214 215 7.094634 TGCAGATTCTACAAGAAAGACATTTCC 60.095 37.037 0.00 0.00 45.01 3.13
225 227 8.390354 CGTTTGATATTTGCAGATTCTACAAGA 58.610 33.333 0.00 0.00 0.00 3.02
226 228 8.390354 TCGTTTGATATTTGCAGATTCTACAAG 58.610 33.333 0.00 0.00 0.00 3.16
227 229 8.262715 TCGTTTGATATTTGCAGATTCTACAA 57.737 30.769 0.00 0.00 0.00 2.41
228 230 7.841915 TCGTTTGATATTTGCAGATTCTACA 57.158 32.000 0.00 0.00 0.00 2.74
229 231 7.800380 CCATCGTTTGATATTTGCAGATTCTAC 59.200 37.037 0.00 0.00 32.18 2.59
230 232 7.498900 ACCATCGTTTGATATTTGCAGATTCTA 59.501 33.333 0.00 0.00 32.18 2.10
255 257 3.857052 TGGGTGATTACATCTGTCGAAC 58.143 45.455 0.00 0.00 0.00 3.95
266 268 4.142609 TCAGAGCAGAATGGGTGATTAC 57.857 45.455 0.00 0.00 35.86 1.89
269 272 3.726557 TTTCAGAGCAGAATGGGTGAT 57.273 42.857 0.00 0.00 35.86 3.06
293 296 6.797033 CGCTTCGATGAAGTTTACAATTTCTT 59.203 34.615 8.23 0.00 41.27 2.52
297 300 4.142687 CCCGCTTCGATGAAGTTTACAATT 60.143 41.667 8.23 0.00 41.27 2.32
300 303 2.343101 CCCGCTTCGATGAAGTTTACA 58.657 47.619 8.23 0.00 41.27 2.41
302 305 1.276989 ACCCCGCTTCGATGAAGTTTA 59.723 47.619 8.23 0.00 41.27 2.01
305 308 0.391263 GAACCCCGCTTCGATGAAGT 60.391 55.000 8.23 0.00 41.27 3.01
306 309 0.391130 TGAACCCCGCTTCGATGAAG 60.391 55.000 1.89 2.22 42.03 3.02
309 312 1.079127 AGTGAACCCCGCTTCGATG 60.079 57.895 0.00 0.00 29.82 3.84
310 313 1.218316 GAGTGAACCCCGCTTCGAT 59.782 57.895 0.00 0.00 35.38 3.59
312 315 2.809601 CGAGTGAACCCCGCTTCG 60.810 66.667 0.00 0.00 35.38 3.79
319 322 1.068585 AACACGGTCGAGTGAACCC 59.931 57.895 11.39 0.00 44.43 4.11
320 323 1.828331 GCAACACGGTCGAGTGAACC 61.828 60.000 11.39 0.00 44.43 3.62
322 325 0.249699 ATGCAACACGGTCGAGTGAA 60.250 50.000 11.39 0.00 44.43 3.18
323 326 0.599060 TATGCAACACGGTCGAGTGA 59.401 50.000 11.39 0.00 44.43 3.41
332 335 2.855963 CGTAAGGTACCTATGCAACACG 59.144 50.000 16.67 11.91 0.00 4.49
367 370 2.472723 CGACGTTTCCCCGTTAATTTCG 60.473 50.000 0.00 0.00 41.98 3.46
368 371 2.159667 CCGACGTTTCCCCGTTAATTTC 60.160 50.000 0.00 0.00 41.98 2.17
373 376 0.105778 AAACCGACGTTTCCCCGTTA 59.894 50.000 0.00 0.00 41.98 3.18
375 378 1.153188 AAAACCGACGTTTCCCCGT 60.153 52.632 0.00 0.00 41.42 5.28
377 380 1.102809 ACCAAAACCGACGTTTCCCC 61.103 55.000 0.00 0.00 41.42 4.81
387 390 0.310854 GTGCTCCTGAACCAAAACCG 59.689 55.000 0.00 0.00 0.00 4.44
409 412 8.740123 TCAAACTAGAACAAGAACAATAACCA 57.260 30.769 0.00 0.00 0.00 3.67
411 414 8.837389 ACCTCAAACTAGAACAAGAACAATAAC 58.163 33.333 0.00 0.00 0.00 1.89
433 441 0.667792 GTGCCGTCTGAGACAACCTC 60.668 60.000 13.67 0.00 42.30 3.85
492 500 5.194473 TCTATTATCTGGTCGGGAGCTAT 57.806 43.478 0.00 0.00 0.00 2.97
497 505 6.638021 TCTCTATCTATTATCTGGTCGGGA 57.362 41.667 0.00 0.00 0.00 5.14
568 579 0.828022 GGATATGGTGGTCGTGGACA 59.172 55.000 0.00 0.00 33.68 4.02
575 586 1.213094 CGCGAACGGATATGGTGGTC 61.213 60.000 0.00 0.00 34.97 4.02
641 672 4.722700 TTCGCTTGCCAGCCTCCC 62.723 66.667 3.88 0.00 44.06 4.30
724 761 1.262151 GTCGCCGTTTCAACTGCTTTA 59.738 47.619 4.82 0.00 37.05 1.85
799 841 1.908066 GCTTGCGGGTCGATTTTCGT 61.908 55.000 0.00 0.00 41.35 3.85
884 945 2.743928 GGTGAAGCCCGCAGTCTG 60.744 66.667 0.00 0.00 0.00 3.51
947 1008 3.978764 CACGCACGCACGAACGAA 61.979 61.111 14.23 0.00 36.70 3.85
981 1047 0.662374 TCGAAACAGACGGAAGCGAC 60.662 55.000 0.00 0.00 0.00 5.19
1018 1084 2.901813 CTCCTGCTCCTGCTCCTG 59.098 66.667 0.00 0.00 40.48 3.86
1024 1090 2.901813 CTCCTGCTCCTGCTCCTG 59.098 66.667 0.00 0.00 40.48 3.86
1030 1096 4.834453 CCGCTGCTCCTGCTCCTG 62.834 72.222 0.00 0.00 40.48 3.86
1269 1347 7.067981 TCGCTCTCCTATATCTATACGACTGTA 59.932 40.741 0.00 0.00 34.45 2.74
1273 1351 5.176223 GCTCGCTCTCCTATATCTATACGAC 59.824 48.000 0.00 0.00 0.00 4.34
1274 1352 5.291178 GCTCGCTCTCCTATATCTATACGA 58.709 45.833 0.00 0.00 0.00 3.43
1275 1353 4.149221 CGCTCGCTCTCCTATATCTATACG 59.851 50.000 0.00 0.00 0.00 3.06
1276 1354 5.291178 TCGCTCGCTCTCCTATATCTATAC 58.709 45.833 0.00 0.00 0.00 1.47
1309 1387 1.741706 CGACCGTACTAAGGCTCTCAA 59.258 52.381 0.00 0.00 0.00 3.02
1318 1396 1.265095 GGCATCGATCGACCGTACTAA 59.735 52.381 22.06 0.00 0.00 2.24
1326 1404 0.032678 ATGGACAGGCATCGATCGAC 59.967 55.000 22.06 8.70 0.00 4.20
1376 1456 4.399004 AAAGCAGCTAGATCGATCAACT 57.601 40.909 26.47 16.84 0.00 3.16
1431 1515 7.388437 AGGTGAACTTCGGTATATTTACAACA 58.612 34.615 0.00 0.00 0.00 3.33
1514 1599 5.064707 TCCATTCCGAATCAAACGAAGAATC 59.935 40.000 0.00 0.00 0.00 2.52
1533 1618 2.671070 GCGTTTTCTGCGGATTTCCATT 60.671 45.455 0.00 0.00 35.14 3.16
1622 1711 0.813821 CAGTCGATCTGTGCCTCTCA 59.186 55.000 6.79 0.00 39.17 3.27
1624 1713 1.102154 CTCAGTCGATCTGTGCCTCT 58.898 55.000 12.62 0.00 43.97 3.69
1712 1806 3.128764 TGACAGATGCGTATCTCGTCTTT 59.871 43.478 28.03 7.32 41.71 2.52
1765 1859 9.021807 AGTTCATTCTGTGATTTGATTTCATCT 57.978 29.630 0.00 0.00 36.54 2.90
1769 1863 9.727627 GGATAGTTCATTCTGTGATTTGATTTC 57.272 33.333 0.00 0.00 36.54 2.17
1770 1864 8.400947 CGGATAGTTCATTCTGTGATTTGATTT 58.599 33.333 0.00 0.00 36.54 2.17
1771 1865 7.554118 ACGGATAGTTCATTCTGTGATTTGATT 59.446 33.333 0.00 0.00 36.54 2.57
1772 1866 7.050377 ACGGATAGTTCATTCTGTGATTTGAT 58.950 34.615 0.00 0.00 36.54 2.57
1773 1867 6.406370 ACGGATAGTTCATTCTGTGATTTGA 58.594 36.000 0.00 0.00 36.54 2.69
1774 1868 6.668541 ACGGATAGTTCATTCTGTGATTTG 57.331 37.500 0.00 0.00 36.54 2.32
1775 1869 8.786826 TTTACGGATAGTTCATTCTGTGATTT 57.213 30.769 0.00 0.00 36.54 2.17
1776 1870 8.665685 GTTTTACGGATAGTTCATTCTGTGATT 58.334 33.333 0.00 0.00 36.54 2.57
1777 1871 8.041323 AGTTTTACGGATAGTTCATTCTGTGAT 58.959 33.333 0.00 0.00 36.54 3.06
1778 1872 7.383687 AGTTTTACGGATAGTTCATTCTGTGA 58.616 34.615 0.00 0.00 33.60 3.58
1779 1873 7.596749 AGTTTTACGGATAGTTCATTCTGTG 57.403 36.000 0.00 0.00 33.60 3.66
1780 1874 9.886132 AATAGTTTTACGGATAGTTCATTCTGT 57.114 29.630 0.00 0.00 35.66 3.41
1785 1879 8.814235 CGTGAAATAGTTTTACGGATAGTTCAT 58.186 33.333 10.64 0.00 45.34 2.57
1786 1880 8.176814 CGTGAAATAGTTTTACGGATAGTTCA 57.823 34.615 10.64 0.00 45.34 3.18
1796 1890 3.123959 TCAGCCGCGTGAAATAGTTTTAC 59.876 43.478 4.92 0.00 0.00 2.01
1797 1891 3.123959 GTCAGCCGCGTGAAATAGTTTTA 59.876 43.478 4.92 0.00 0.00 1.52
1798 1892 2.095919 GTCAGCCGCGTGAAATAGTTTT 60.096 45.455 4.92 0.00 0.00 2.43
1799 1893 1.463444 GTCAGCCGCGTGAAATAGTTT 59.537 47.619 4.92 0.00 0.00 2.66
1800 1894 1.076332 GTCAGCCGCGTGAAATAGTT 58.924 50.000 4.92 0.00 0.00 2.24
1801 1895 0.739813 GGTCAGCCGCGTGAAATAGT 60.740 55.000 4.92 0.00 0.00 2.12
1802 1896 0.460284 AGGTCAGCCGCGTGAAATAG 60.460 55.000 4.92 0.00 40.50 1.73
1803 1897 0.036765 AAGGTCAGCCGCGTGAAATA 60.037 50.000 4.92 0.00 40.50 1.40
1804 1898 0.889186 AAAGGTCAGCCGCGTGAAAT 60.889 50.000 4.92 0.00 40.50 2.17
1805 1899 1.098712 AAAAGGTCAGCCGCGTGAAA 61.099 50.000 4.92 0.00 40.50 2.69
1806 1900 1.098712 AAAAAGGTCAGCCGCGTGAA 61.099 50.000 4.92 0.00 40.50 3.18
1807 1901 1.525077 AAAAAGGTCAGCCGCGTGA 60.525 52.632 4.92 0.00 40.50 4.35
1808 1902 1.370414 CAAAAAGGTCAGCCGCGTG 60.370 57.895 4.92 0.00 40.50 5.34
1809 1903 1.822186 ACAAAAAGGTCAGCCGCGT 60.822 52.632 4.92 0.00 40.50 6.01
1810 1904 1.370414 CACAAAAAGGTCAGCCGCG 60.370 57.895 0.00 0.00 40.50 6.46
1811 1905 0.594796 CACACAAAAAGGTCAGCCGC 60.595 55.000 0.00 0.00 40.50 6.53
1812 1906 1.021202 TCACACAAAAAGGTCAGCCG 58.979 50.000 0.00 0.00 40.50 5.52
1813 1907 1.268539 CGTCACACAAAAAGGTCAGCC 60.269 52.381 0.00 0.00 0.00 4.85
1814 1908 1.859998 GCGTCACACAAAAAGGTCAGC 60.860 52.381 0.00 0.00 0.00 4.26
1815 1909 1.268539 GGCGTCACACAAAAAGGTCAG 60.269 52.381 0.00 0.00 0.00 3.51
1816 1910 0.736053 GGCGTCACACAAAAAGGTCA 59.264 50.000 0.00 0.00 0.00 4.02
1817 1911 0.030235 GGGCGTCACACAAAAAGGTC 59.970 55.000 0.00 0.00 0.00 3.85
1818 1912 1.720694 CGGGCGTCACACAAAAAGGT 61.721 55.000 0.00 0.00 0.00 3.50
1819 1913 1.008995 CGGGCGTCACACAAAAAGG 60.009 57.895 0.00 0.00 0.00 3.11
1820 1914 0.316689 GTCGGGCGTCACACAAAAAG 60.317 55.000 0.00 0.00 0.00 2.27
1821 1915 1.025113 TGTCGGGCGTCACACAAAAA 61.025 50.000 0.00 0.00 0.00 1.94
1822 1916 1.449778 TGTCGGGCGTCACACAAAA 60.450 52.632 0.00 0.00 0.00 2.44
1823 1917 2.174969 GTGTCGGGCGTCACACAAA 61.175 57.895 5.81 0.00 42.20 2.83
1824 1918 2.586635 GTGTCGGGCGTCACACAA 60.587 61.111 5.81 0.00 42.20 3.33
1825 1919 4.934942 CGTGTCGGGCGTCACACA 62.935 66.667 10.72 0.00 42.67 3.72
1826 1920 4.634133 TCGTGTCGGGCGTCACAC 62.634 66.667 0.75 0.75 39.70 3.82
1827 1921 3.834447 CTTCGTGTCGGGCGTCACA 62.834 63.158 0.00 0.00 34.69 3.58
1828 1922 3.103911 CTTCGTGTCGGGCGTCAC 61.104 66.667 0.00 0.00 0.00 3.67
1829 1923 4.351938 CCTTCGTGTCGGGCGTCA 62.352 66.667 0.00 0.00 0.00 4.35
1837 1931 2.758770 TAGTGTGGCGCCTTCGTGTC 62.759 60.000 29.70 10.72 38.14 3.67
1838 1932 2.863346 TAGTGTGGCGCCTTCGTGT 61.863 57.895 29.70 9.85 38.14 4.49
1839 1933 2.048597 TAGTGTGGCGCCTTCGTG 60.049 61.111 29.70 0.00 38.14 4.35
1840 1934 2.048503 GTAGTGTGGCGCCTTCGT 60.049 61.111 29.70 12.53 38.14 3.85
1841 1935 2.048597 TGTAGTGTGGCGCCTTCG 60.049 61.111 29.70 0.00 39.07 3.79
1842 1936 1.004918 AGTGTAGTGTGGCGCCTTC 60.005 57.895 29.70 20.58 0.00 3.46
1843 1937 1.301716 CAGTGTAGTGTGGCGCCTT 60.302 57.895 29.70 13.03 0.00 4.35
1844 1938 2.343758 CAGTGTAGTGTGGCGCCT 59.656 61.111 29.70 9.99 0.00 5.52
1845 1939 2.030562 ACAGTGTAGTGTGGCGCC 59.969 61.111 22.73 22.73 0.00 6.53
1846 1940 2.954753 GCACAGTGTAGTGTGGCGC 61.955 63.158 18.52 0.00 46.73 6.53
1847 1941 1.157257 TTGCACAGTGTAGTGTGGCG 61.157 55.000 18.52 0.00 46.73 5.69
1848 1942 0.307760 GTTGCACAGTGTAGTGTGGC 59.692 55.000 18.52 12.34 46.73 5.01
1849 1943 0.581529 CGTTGCACAGTGTAGTGTGG 59.418 55.000 18.52 1.81 46.73 4.17
1851 1945 1.157870 GGCGTTGCACAGTGTAGTGT 61.158 55.000 1.61 0.00 41.52 3.55
1852 1946 0.880278 AGGCGTTGCACAGTGTAGTG 60.880 55.000 1.61 0.00 42.37 2.74
1853 1947 0.600255 GAGGCGTTGCACAGTGTAGT 60.600 55.000 1.61 0.00 0.00 2.73
1854 1948 0.599991 TGAGGCGTTGCACAGTGTAG 60.600 55.000 1.61 0.00 0.00 2.74
1855 1949 0.878523 GTGAGGCGTTGCACAGTGTA 60.879 55.000 1.61 0.00 35.19 2.90
1856 1950 2.180204 GTGAGGCGTTGCACAGTGT 61.180 57.895 1.61 0.00 35.19 3.55
1857 1951 2.179547 TGTGAGGCGTTGCACAGTG 61.180 57.895 0.00 0.00 39.86 3.66
1858 1952 2.189257 TGTGAGGCGTTGCACAGT 59.811 55.556 0.00 0.00 39.86 3.55
1860 1954 0.320050 TATCTGTGAGGCGTTGCACA 59.680 50.000 0.00 0.00 42.25 4.57
1861 1955 1.002366 CTATCTGTGAGGCGTTGCAC 58.998 55.000 0.00 0.00 35.63 4.57
1862 1956 0.108186 CCTATCTGTGAGGCGTTGCA 60.108 55.000 0.00 0.00 0.00 4.08
1863 1957 2.682893 CCTATCTGTGAGGCGTTGC 58.317 57.895 0.00 0.00 0.00 4.17
1869 1963 1.032794 TGTAGCGCCTATCTGTGAGG 58.967 55.000 2.29 0.00 37.12 3.86
1870 1964 1.269309 GGTGTAGCGCCTATCTGTGAG 60.269 57.143 2.29 0.00 0.00 3.51
1871 1965 0.744874 GGTGTAGCGCCTATCTGTGA 59.255 55.000 2.29 0.00 0.00 3.58
1872 1966 0.595053 CGGTGTAGCGCCTATCTGTG 60.595 60.000 2.29 0.00 0.00 3.66
1873 1967 1.734137 CGGTGTAGCGCCTATCTGT 59.266 57.895 2.29 0.00 0.00 3.41
1874 1968 1.661821 GCGGTGTAGCGCCTATCTG 60.662 63.158 16.69 0.00 0.00 2.90
1875 1969 2.728817 GCGGTGTAGCGCCTATCT 59.271 61.111 16.69 0.00 0.00 1.98
1876 1970 2.355956 GGCGGTGTAGCGCCTATC 60.356 66.667 32.72 12.40 46.71 2.08
1897 1991 0.663269 TCTGATCACACGTGTGCGAC 60.663 55.000 37.70 29.00 45.25 5.19
1898 1992 0.031449 TTCTGATCACACGTGTGCGA 59.969 50.000 37.70 27.03 45.25 5.10
1899 1993 0.858583 TTTCTGATCACACGTGTGCG 59.141 50.000 37.70 25.53 45.25 5.34
1900 1994 3.542712 ATTTTCTGATCACACGTGTGC 57.457 42.857 37.70 26.75 45.25 4.57
1901 1995 6.228273 AGTAATTTTCTGATCACACGTGTG 57.772 37.500 37.04 37.04 46.91 3.82
1902 1996 7.656137 ACTTAGTAATTTTCTGATCACACGTGT 59.344 33.333 17.22 17.22 0.00 4.49
1903 1997 8.018677 ACTTAGTAATTTTCTGATCACACGTG 57.981 34.615 15.48 15.48 0.00 4.49
1904 1998 7.061905 CGACTTAGTAATTTTCTGATCACACGT 59.938 37.037 0.00 0.00 0.00 4.49
1905 1999 7.061905 ACGACTTAGTAATTTTCTGATCACACG 59.938 37.037 0.00 0.00 0.00 4.49
1906 2000 8.162880 CACGACTTAGTAATTTTCTGATCACAC 58.837 37.037 0.00 0.00 0.00 3.82
1907 2001 7.870954 ACACGACTTAGTAATTTTCTGATCACA 59.129 33.333 0.00 0.00 0.00 3.58
1908 2002 8.162880 CACACGACTTAGTAATTTTCTGATCAC 58.837 37.037 0.00 0.00 0.00 3.06
1909 2003 7.148639 GCACACGACTTAGTAATTTTCTGATCA 60.149 37.037 0.00 0.00 0.00 2.92
1910 2004 7.148639 TGCACACGACTTAGTAATTTTCTGATC 60.149 37.037 0.00 0.00 0.00 2.92
1911 2005 6.649141 TGCACACGACTTAGTAATTTTCTGAT 59.351 34.615 0.00 0.00 0.00 2.90
1912 2006 5.986741 TGCACACGACTTAGTAATTTTCTGA 59.013 36.000 0.00 0.00 0.00 3.27
1913 2007 6.223138 TGCACACGACTTAGTAATTTTCTG 57.777 37.500 0.00 0.00 0.00 3.02
1914 2008 5.107065 GCTGCACACGACTTAGTAATTTTCT 60.107 40.000 0.00 0.00 0.00 2.52
1915 2009 5.080068 GCTGCACACGACTTAGTAATTTTC 58.920 41.667 0.00 0.00 0.00 2.29
1916 2010 4.377022 CGCTGCACACGACTTAGTAATTTT 60.377 41.667 0.00 0.00 0.00 1.82
1917 2011 3.122948 CGCTGCACACGACTTAGTAATTT 59.877 43.478 0.00 0.00 0.00 1.82
1918 2012 2.666508 CGCTGCACACGACTTAGTAATT 59.333 45.455 0.00 0.00 0.00 1.40
1919 2013 2.259618 CGCTGCACACGACTTAGTAAT 58.740 47.619 0.00 0.00 0.00 1.89
1920 2014 1.693467 CGCTGCACACGACTTAGTAA 58.307 50.000 0.00 0.00 0.00 2.24
1921 2015 0.731514 GCGCTGCACACGACTTAGTA 60.732 55.000 0.00 0.00 0.00 1.82
1922 2016 2.022129 GCGCTGCACACGACTTAGT 61.022 57.895 0.00 0.00 0.00 2.24
1923 2017 2.730672 GGCGCTGCACACGACTTAG 61.731 63.158 7.64 0.00 35.06 2.18
1924 2018 2.736995 GGCGCTGCACACGACTTA 60.737 61.111 7.64 0.00 35.06 2.24
1930 2024 3.117171 CTCTCAGGCGCTGCACAC 61.117 66.667 7.64 0.00 0.00 3.82
1932 2026 3.362399 TAGCTCTCAGGCGCTGCAC 62.362 63.158 7.64 0.00 37.05 4.57
1933 2027 3.070576 TAGCTCTCAGGCGCTGCA 61.071 61.111 7.64 0.00 37.05 4.41
1934 2028 2.279385 CTAGCTCTCAGGCGCTGC 60.279 66.667 7.64 2.66 37.05 5.25
1935 2029 1.065600 GTCTAGCTCTCAGGCGCTG 59.934 63.158 7.64 3.67 37.05 5.18
1936 2030 2.477176 CGTCTAGCTCTCAGGCGCT 61.477 63.158 7.64 0.00 33.95 5.92
1937 2031 2.025441 CGTCTAGCTCTCAGGCGC 59.975 66.667 0.00 0.00 33.95 6.53
1938 2032 2.025441 GCGTCTAGCTCTCAGGCG 59.975 66.667 4.62 4.62 43.80 5.52
1944 2038 7.889812 ACTGTATAGTGTGGCGTCTAGCTCT 62.890 48.000 0.00 0.00 40.04 4.09
1945 2039 5.749989 ACTGTATAGTGTGGCGTCTAGCTC 61.750 50.000 0.00 0.00 40.04 4.09
1946 2040 3.936031 ACTGTATAGTGTGGCGTCTAGCT 60.936 47.826 0.00 0.00 40.04 3.32
1947 2041 2.358267 ACTGTATAGTGTGGCGTCTAGC 59.642 50.000 0.00 0.00 39.66 3.42
1958 2052 3.609644 GCTAGGCGCTACACTGTATAGTG 60.610 52.174 17.20 17.20 46.55 2.74
1959 2053 2.553172 GCTAGGCGCTACACTGTATAGT 59.447 50.000 7.64 0.00 34.63 2.12
1960 2054 3.204597 GCTAGGCGCTACACTGTATAG 57.795 52.381 7.64 0.00 35.14 1.31
1976 2070 0.528684 GTGCAACGCCTAGGAGCTAG 60.529 60.000 14.75 3.92 34.16 3.42
1977 2071 0.970937 AGTGCAACGCCTAGGAGCTA 60.971 55.000 14.75 0.00 45.86 3.32
1978 2072 0.970937 TAGTGCAACGCCTAGGAGCT 60.971 55.000 14.75 3.79 45.86 4.09
1979 2073 0.528684 CTAGTGCAACGCCTAGGAGC 60.529 60.000 14.75 10.85 45.86 4.70
1980 2074 0.818296 ACTAGTGCAACGCCTAGGAG 59.182 55.000 14.75 12.99 45.86 3.69
1981 2075 0.530744 CACTAGTGCAACGCCTAGGA 59.469 55.000 14.75 0.00 45.86 2.94
1982 2076 3.050703 CACTAGTGCAACGCCTAGG 57.949 57.895 10.54 3.67 45.86 3.02
1993 2087 1.880340 GCTAGGCGCTGCACTAGTG 60.880 63.158 18.93 18.93 39.07 2.74
1994 2088 2.496817 GCTAGGCGCTGCACTAGT 59.503 61.111 21.78 0.00 39.07 2.57
2007 2101 1.827969 AGTGCAACACCTAGGAGCTAG 59.172 52.381 17.98 2.17 41.43 3.42
2008 2102 1.938585 AGTGCAACACCTAGGAGCTA 58.061 50.000 17.98 2.67 41.43 3.32
2009 2103 1.827969 CTAGTGCAACACCTAGGAGCT 59.172 52.381 17.98 2.03 41.43 4.09
2010 2104 1.550976 ACTAGTGCAACACCTAGGAGC 59.449 52.381 17.98 13.88 41.43 4.70
2011 2105 3.238108 CACTAGTGCAACACCTAGGAG 57.762 52.381 17.98 10.85 41.43 3.69
2024 2118 0.523519 TCTCAGACGCTGCACTAGTG 59.476 55.000 18.93 18.93 42.68 2.74
2025 2119 0.808125 CTCTCAGACGCTGCACTAGT 59.192 55.000 0.00 0.00 0.00 2.57
2026 2120 0.525242 GCTCTCAGACGCTGCACTAG 60.525 60.000 0.00 0.00 0.00 2.57
2027 2121 0.962855 AGCTCTCAGACGCTGCACTA 60.963 55.000 0.00 0.00 34.69 2.74
2028 2122 0.962855 TAGCTCTCAGACGCTGCACT 60.963 55.000 8.43 0.00 37.05 4.40
2029 2123 0.525242 CTAGCTCTCAGACGCTGCAC 60.525 60.000 8.43 0.00 37.05 4.57
2030 2124 1.661498 CCTAGCTCTCAGACGCTGCA 61.661 60.000 8.43 0.00 37.05 4.41
2031 2125 1.065600 CCTAGCTCTCAGACGCTGC 59.934 63.158 8.43 0.00 37.05 5.25
2032 2126 1.065600 GCCTAGCTCTCAGACGCTG 59.934 63.158 8.43 1.02 37.05 5.18
2033 2127 2.477176 CGCCTAGCTCTCAGACGCT 61.477 63.158 0.00 4.35 40.15 5.07
2034 2128 2.025441 CGCCTAGCTCTCAGACGC 59.975 66.667 0.00 0.00 0.00 5.19
2035 2129 2.025441 GCGCCTAGCTCTCAGACG 59.975 66.667 0.00 0.00 44.04 4.18
2045 2139 2.028190 CTGATCCGTGGCGCCTAG 59.972 66.667 29.70 20.71 0.00 3.02
2046 2140 4.221422 GCTGATCCGTGGCGCCTA 62.221 66.667 29.70 11.59 0.00 3.93
2056 2150 0.861837 CTATTTCACGCGGCTGATCC 59.138 55.000 12.47 0.00 0.00 3.36
2057 2151 1.571919 ACTATTTCACGCGGCTGATC 58.428 50.000 12.47 0.00 0.00 2.92
2058 2152 2.024176 AACTATTTCACGCGGCTGAT 57.976 45.000 12.47 1.51 0.00 2.90
2059 2153 1.803334 AAACTATTTCACGCGGCTGA 58.197 45.000 12.47 2.44 0.00 4.26
2060 2154 2.611974 AAAACTATTTCACGCGGCTG 57.388 45.000 12.47 0.00 0.00 4.85
2061 2155 2.093152 CGTAAAACTATTTCACGCGGCT 59.907 45.455 12.47 0.00 0.00 5.52
2062 2156 2.424341 CGTAAAACTATTTCACGCGGC 58.576 47.619 12.47 0.00 0.00 6.53
2063 2157 2.667481 TCCGTAAAACTATTTCACGCGG 59.333 45.455 12.47 0.00 34.24 6.46
2064 2158 3.976468 TCCGTAAAACTATTTCACGCG 57.024 42.857 3.53 3.53 30.82 6.01
2065 2159 6.579491 ACTATCCGTAAAACTATTTCACGC 57.421 37.500 0.00 0.00 30.82 5.34
2066 2160 8.176814 TGAACTATCCGTAAAACTATTTCACG 57.823 34.615 0.00 0.00 0.00 4.35
2111 2205 9.213799 GGCAAAATTGACAAATTTAACCTATGA 57.786 29.630 0.97 0.00 43.63 2.15
2112 2206 8.167985 CGGCAAAATTGACAAATTTAACCTATG 58.832 33.333 13.82 0.24 43.63 2.23
2113 2207 7.875554 ACGGCAAAATTGACAAATTTAACCTAT 59.124 29.630 13.82 4.40 43.63 2.57
2114 2208 7.210873 ACGGCAAAATTGACAAATTTAACCTA 58.789 30.769 13.82 0.00 43.63 3.08
2115 2209 6.052360 ACGGCAAAATTGACAAATTTAACCT 58.948 32.000 13.82 3.94 43.63 3.50
2116 2210 6.018669 TGACGGCAAAATTGACAAATTTAACC 60.019 34.615 0.97 5.64 43.63 2.85
2117 2211 6.938542 TGACGGCAAAATTGACAAATTTAAC 58.061 32.000 0.97 0.00 43.63 2.01
2118 2212 6.201806 CCTGACGGCAAAATTGACAAATTTAA 59.798 34.615 0.00 0.00 43.63 1.52
2119 2213 5.694006 CCTGACGGCAAAATTGACAAATTTA 59.306 36.000 0.00 0.00 43.63 1.40
2120 2214 4.511082 CCTGACGGCAAAATTGACAAATTT 59.489 37.500 0.00 0.00 45.81 1.82
2121 2215 4.057432 CCTGACGGCAAAATTGACAAATT 58.943 39.130 0.00 0.00 35.35 1.82
2122 2216 3.652274 CCTGACGGCAAAATTGACAAAT 58.348 40.909 0.00 0.00 35.35 2.32
2123 2217 3.090952 CCTGACGGCAAAATTGACAAA 57.909 42.857 0.00 0.00 35.35 2.83
2124 2218 2.791383 CCTGACGGCAAAATTGACAA 57.209 45.000 0.00 0.00 35.35 3.18
2136 2230 4.537433 GCCTAGCCTGCCTGACGG 62.537 72.222 0.00 0.00 0.00 4.79
2137 2231 3.774528 TGCCTAGCCTGCCTGACG 61.775 66.667 0.00 0.00 0.00 4.35
2138 2232 2.124942 GTGCCTAGCCTGCCTGAC 60.125 66.667 0.00 0.00 0.00 3.51
2139 2233 3.774528 CGTGCCTAGCCTGCCTGA 61.775 66.667 0.00 0.00 0.00 3.86
2140 2234 4.087892 ACGTGCCTAGCCTGCCTG 62.088 66.667 0.00 0.00 0.00 4.85
2141 2235 4.087892 CACGTGCCTAGCCTGCCT 62.088 66.667 0.82 0.00 0.00 4.75
2143 2237 3.901797 AACCACGTGCCTAGCCTGC 62.902 63.158 10.91 0.00 0.00 4.85
2144 2238 2.034879 CAACCACGTGCCTAGCCTG 61.035 63.158 10.91 0.00 0.00 4.85
2145 2239 1.764571 TTCAACCACGTGCCTAGCCT 61.765 55.000 10.91 0.00 0.00 4.58
2146 2240 1.298859 CTTCAACCACGTGCCTAGCC 61.299 60.000 10.91 0.00 0.00 3.93
2147 2241 1.298859 CCTTCAACCACGTGCCTAGC 61.299 60.000 10.91 0.00 0.00 3.42
2148 2242 1.298859 GCCTTCAACCACGTGCCTAG 61.299 60.000 10.91 0.00 0.00 3.02
2149 2243 1.302192 GCCTTCAACCACGTGCCTA 60.302 57.895 10.91 0.00 0.00 3.93
2150 2244 2.594592 GCCTTCAACCACGTGCCT 60.595 61.111 10.91 0.00 0.00 4.75
2151 2245 3.670377 GGCCTTCAACCACGTGCC 61.670 66.667 10.91 1.02 0.00 5.01
2152 2246 4.025401 CGGCCTTCAACCACGTGC 62.025 66.667 10.91 0.00 0.00 5.34
2153 2247 3.353836 CCGGCCTTCAACCACGTG 61.354 66.667 9.08 9.08 0.00 4.49
2154 2248 3.530910 CTCCGGCCTTCAACCACGT 62.531 63.158 0.00 0.00 0.00 4.49
2155 2249 2.742372 CTCCGGCCTTCAACCACG 60.742 66.667 0.00 0.00 0.00 4.94
2156 2250 3.056328 GCTCCGGCCTTCAACCAC 61.056 66.667 0.00 0.00 0.00 4.16
2157 2251 4.697756 CGCTCCGGCCTTCAACCA 62.698 66.667 0.00 0.00 34.44 3.67
2158 2252 3.305177 TACGCTCCGGCCTTCAACC 62.305 63.158 0.00 0.00 34.44 3.77
2159 2253 1.810030 CTACGCTCCGGCCTTCAAC 60.810 63.158 0.00 0.00 34.44 3.18
2160 2254 2.577059 CTACGCTCCGGCCTTCAA 59.423 61.111 0.00 0.00 34.44 2.69
2161 2255 4.143333 GCTACGCTCCGGCCTTCA 62.143 66.667 0.00 0.00 34.44 3.02
2165 2259 4.625781 CTACGCTACGCTCCGGCC 62.626 72.222 0.00 0.00 34.44 6.13
2166 2260 3.580193 TCTACGCTACGCTCCGGC 61.580 66.667 0.00 0.00 0.00 6.13
2167 2261 2.327244 GTCTACGCTACGCTCCGG 59.673 66.667 0.00 0.00 0.00 5.14
2168 2262 1.297451 GTGTCTACGCTACGCTCCG 60.297 63.158 0.00 0.00 0.00 4.63
2169 2263 1.297451 CGTGTCTACGCTACGCTCC 60.297 63.158 0.00 0.00 44.11 4.70
2170 2264 4.265355 CGTGTCTACGCTACGCTC 57.735 61.111 0.00 0.00 44.11 5.03
2179 2273 1.139947 GCTCCTCCTGCGTGTCTAC 59.860 63.158 0.00 0.00 0.00 2.59
2180 2274 1.304134 TGCTCCTCCTGCGTGTCTA 60.304 57.895 0.00 0.00 0.00 2.59
2181 2275 2.601666 TGCTCCTCCTGCGTGTCT 60.602 61.111 0.00 0.00 0.00 3.41
2182 2276 2.433318 GTGCTCCTCCTGCGTGTC 60.433 66.667 0.00 0.00 0.00 3.67
2183 2277 2.919856 AGTGCTCCTCCTGCGTGT 60.920 61.111 0.00 0.00 0.00 4.49
2184 2278 2.125753 GAGTGCTCCTCCTGCGTG 60.126 66.667 0.00 0.00 33.79 5.34
2185 2279 3.753434 CGAGTGCTCCTCCTGCGT 61.753 66.667 0.00 0.00 36.82 5.24
2186 2280 2.880719 CTTCGAGTGCTCCTCCTGCG 62.881 65.000 0.00 0.00 36.82 5.18
2187 2281 1.153667 CTTCGAGTGCTCCTCCTGC 60.154 63.158 0.00 0.00 36.82 4.85
2188 2282 1.153667 GCTTCGAGTGCTCCTCCTG 60.154 63.158 5.41 0.00 36.82 3.86
2189 2283 1.188219 TTGCTTCGAGTGCTCCTCCT 61.188 55.000 12.49 0.00 36.82 3.69
2190 2284 1.016653 GTTGCTTCGAGTGCTCCTCC 61.017 60.000 12.49 0.00 36.82 4.30
2191 2285 0.319900 TGTTGCTTCGAGTGCTCCTC 60.320 55.000 12.49 0.00 36.80 3.71
2192 2286 0.320247 CTGTTGCTTCGAGTGCTCCT 60.320 55.000 12.49 0.00 0.00 3.69
2193 2287 1.905922 GCTGTTGCTTCGAGTGCTCC 61.906 60.000 12.49 5.08 36.03 4.70
2194 2288 1.495069 GCTGTTGCTTCGAGTGCTC 59.505 57.895 12.49 7.36 36.03 4.26
2195 2289 2.313172 CGCTGTTGCTTCGAGTGCT 61.313 57.895 12.49 0.00 36.97 4.40
2196 2290 2.171940 CGCTGTTGCTTCGAGTGC 59.828 61.111 5.67 5.67 36.97 4.40
2197 2291 2.856032 CCGCTGTTGCTTCGAGTG 59.144 61.111 0.00 0.00 36.97 3.51
2198 2292 3.044305 GCCGCTGTTGCTTCGAGT 61.044 61.111 0.00 0.00 36.97 4.18
2199 2293 4.139420 CGCCGCTGTTGCTTCGAG 62.139 66.667 0.00 0.00 36.97 4.04
2211 2305 2.941964 AATTATTGCTGCAGCGCCGC 62.942 55.000 32.11 9.12 45.83 6.53
2212 2306 0.931662 GAATTATTGCTGCAGCGCCG 60.932 55.000 32.11 0.00 45.83 6.46
2213 2307 0.101040 TGAATTATTGCTGCAGCGCC 59.899 50.000 32.11 15.91 45.83 6.53
2214 2308 1.585214 GTTGAATTATTGCTGCAGCGC 59.415 47.619 32.11 12.85 45.83 5.92
2215 2309 2.187707 GGTTGAATTATTGCTGCAGCG 58.812 47.619 32.11 0.52 45.83 5.18
2216 2310 2.094078 TGGGTTGAATTATTGCTGCAGC 60.094 45.455 31.89 31.89 42.50 5.25
2217 2311 3.194116 ACTGGGTTGAATTATTGCTGCAG 59.806 43.478 10.11 10.11 0.00 4.41
2218 2312 3.164268 ACTGGGTTGAATTATTGCTGCA 58.836 40.909 0.00 0.00 0.00 4.41
2219 2313 3.874392 ACTGGGTTGAATTATTGCTGC 57.126 42.857 0.00 0.00 0.00 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.