>input_sequence_86213
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-------------------------ATGGAGGGGAGGAGGCTGCAGGAGCAGGAGCAGGAGCAGGAGCAGCGGGAGGTGC
TGCTCATCCACAGCCAGGTGCGGAGGATCAAGCGGGAGGACGAGGAGACCCGGAGGCACCTCCTCAAGCTGCAGCTGCTG
GAGACGAGGCCGGCCGCCGGGCA------------GGAGGCCTCGCCGCCGGCCTCCCGCTCGCTGTCGCCGCTGCGGCG
TGCCGGGAGCGCCATACCGGTCGGCGACTGGGCCTAG-------------------------------------------
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>chr5B_1_TraesCS5B01G203000
AGTAGTTAATGAAGAGAGATGTTTGTGGTACCGTAACATAACGTTTTCTAAGAGAAGATGCGTCTGCTAGCTAATAAATA
AAATCATGTATAACACTATTACTATGATATTTTGCAGTATAAAGGTACTAATCGCTTAAACCAGCGTCATATGCATGACT
TGTTTAATTTACTCCCCATTATGACCAGCCTAAAAAAAACCTGAAGAAGTCTATG-GAAATGTCTTTCTTGTAGAATCTG
CAAATATCAAACGATGGTTCGACAGATG-TAATCACCCATTCTGCTCTGAAATTCAAGAAATTGTAAACTTCATCGAAGC
GGGGTTCACTCGACCGTGTTGCATAGGTACCTTACGGAAATAAAAACTCCGAAATTAACGGGGAAACGTCGGTTTTGGTT
CAGGAGCACTTTGG-----TTATTGTTCTTGTTCTAGTTTGAGGTTGTCTCAGACGGCACGCGTTAATCGTGGATTGAGT
TGATCAGTAACCCAATCAGATAGCTCCCGACCAGATAATA--GATAGAGAATGTGACCGCGCATAGGTGATCAGCCTCT-
CTTTGTGTCCCTGACATTTGTCCACGACCACCATATCCGTTCGCGGAGTCAGTGACCACTCCACACGTTTTCTTTTCTT-
---------CTCCCAGCA----------GAAGGGAGGCTGGCAAGCGAAAGCAAAATGGCG------CGCACGATTAATC
CATGTGTCGAAACAAAAGGAGCAGCCGTGGCGTGGCTTTCTAAAGCAGTTGAAACGGCGACCGCGCTCCGCTCGGAAGCC
ACCCCACGTCTC-----CGGCCCGCCGCCGTCGCTCTCCCACGAAAATCGACCCGCAAGCAAACCCAGACCCGACAACC-
------ACCTCCTC------------CATACCTACCGCTATATAAATCGCGGTCGACACGCCAACAGACTGCGGGCTTCA
CCGATCACCAATACGTTCGGTGCAGGTGCAGCAGATTAACAATTCAGTTCGTTCGTGCGTGCGTGCGTGCT-----CCAT
GGTGAGGTCGCTTCCGTCTGTTTCGATGGAGGGGAGGAGGCTGCAGGAGCAGGAGCAGGAGCAGGAGCAGCGGGAGGTGC
TGCTCATCCACAGCCAGGTGCGGAGGATCAAGCGGGAGGACGAGGAGACCCGGAGGCACCTCCTCAAGCTGCAGCTGCTG
GAGACGAGGCCGGCCGCCGGGCA------------GGAGGCCTCGCCGCCGGCCTCCCGCTCGCTGTCGCCGCTGCGGCG
TGCCGGGAGCGCCATACCGGTCGGCGACTGGGCCTAGTCACCTCGCCTGCCCGGCCAGGCAGCGTATACAGTCGTATAGA
TATAGGAGAGCGAGCGAGCTATATATTTGAGAGCCTTAGTACGGTCGATCGATGCCTGTCCATGCTCTCTGCGTGCATGG
AACCAGAGCTTA--TAGTTGATCGATC----TAGCTGCTTTACATGCTCTGTTTCAGTCGACTTTTCTTCTTCTTGTTGT
AAATATACCGAAGTTCACCTCGTGCTTCTACGTACTGCATCCAAGTTCTTCCATGCTAGTTC-CTTCAGGATTGATTCGA
TTCTTCGTTTGATTCGGAATGGAAATCCGCAGAAAACGCCGGCAAATCGGGCATGTCATTCCCACTCCCGGAGGACGCGC
CT----CAAGGCAACGGCCAGCGGATGAGATGAGAGGCACAGATCGACTGAGGTAGCCAACGTTGACTCGGAAG-----T
AGCATAGGTCGCATCCCGGCATCCGCATGTGTATCTTCTCAGAATAAAGACGAGATACGCATCTGTCAGGCAGGGCAAAT
TTGACAAATTTAACCTATAGATGAAATCAAATCACAGAATGAACTATCCGTAAAACTATTTCACGCGGCTGACCTTTTTG
TGTGACGCCCGACACGAAGGCGCCACACTACACTGTGCAACGCCTCACAGATAGGCGCTACACCGCCAGCGTCGCACACG
TGTGATCAGAAAATTACTAAGTCGTGTGCAGCGCCTGAGAGCTAGACGCCACACTATACAGTGTAGCGCCTAGCTCCTAG
GCGTTGCACTAGTGCAGCGCCTAGCTCCTAGGTGTTGCACTAGTGCAGCGTCTGAGAGCTAGGCGCCACGGATCAGCCGC
GTGAAATAGTTTTACGGATAGTTCATTTTATGATTTGATTTTGTTCATAGGTTAAATTTGTCAATTTTGCCGTCAGGCAG
GCTAGGCACGTGGTTGAAGGCCGGAGCGTAGCGTAGACACGCAGGAGGAGCACTCGAAGCAACAGCGGCGCTGCAGCAAT
AATTCAACCCAGT
>chr5D_158
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-----------------------------------------------------------------------------ACT
AGTTTAATTTCCTTCCCACTATGATAAGCCTAACAAAT--CTAAAGAAGTCTACAAGAAATGTCTTCGGC--AGAATCTG
CAAATATCAGATGATGTTTCGACAGATTTTAGTCACCCATTCTGCTCCGAAATTCGAGACATGGAAACTTTGGTAGAAGC
GACGCCCACTCGACGGTGTTGCCTAGGCACCTTGCGGAAAAATATCTTCA-AAATCACCAGGGAAACGTGGGTTTTGGTT
CAGGAGCACTTCGCTTCGATTATTGTTCTTGTTTTAGCTCCAGGTTGTTTGAGACGGCACGCGTTAATCGTGGATTGAGT
TGATCAGTAACCCAATCAGGTAGCGCCCAACCAGATAATAGTGATAGAGAACGTGACCGCGCATAGGTGATAAGCCTCT-
CTTTGTGTCCCTGACATTGGTCCACCATCATCATATCAGTTCCCCGAGTCAGTGACCACTCCACACGTTTTCTTTTCTTT
TCTTTTCTTCTCCCAGCA----------GAACGGAGGCTGGCAAGCGAAAGCAAAATGGCG------CGCACGATTAATC
CATGTGTCGAAACAAAAGGAGCAGCCGTGGCGTGCCTTTCCAAAGCAATTGAAACGGCGAC--CGCTCCGCTCGGAAGCC
ACCCCACGTCTCGTCTCCGGCCCGCCGCCGTCGCTCTCCCGCGAAAATCGACCCGCAAGCAAACCCAGACCCGACAACC-
------ACCTCCTC------------CACACCTACCGCTATATAAACCGCGGTCGACACGCCAAGAGACTGCGGGCTTCA
CCGATCACCAATACGT--GGTGCAGGTGCAGCAGATTAACAATTCAGC----TCGTGCGTGCGTGCGTGCT-----CCAT
GGTGAGATCGCTTCCGTCTGTTTCAATGGAGGGGAGGAGGCTGGAGGAGGAG------------GAGCAGCGGGAGGTGC
TGCTCATCCACAGCCAGGTGCGGAGGATCAAGCGGGAGGACGAGGAGACCCGGAGGCACCTCCTGAAGCTGCAGCTGCTG
GAGACGAGGCCGGCCGCCGGGCAA------GGGCAGGAGGCCTCGCCGCCGGCCTCCCGCTCGCTGTCACCGCTCCGGCG
CGCCGGGAGCGCCATACCGGTCGGCGACTGGGCCTAGTCACCTCGCGTGGCCGGCCAGGCAGCGTAGACA----TATAGA
TATAGGAGAGCGAGCGAGCTATATATGTGAGAGCCATAGTACGATCGA----TGCCTGTCCATGCTCTCTGGGTGCATGG
AACCAGAGCTTAGTTGATCGATCGATC----TAGCTGCTTTA----CTCTGTTTCAGTCGACTTTTCTTCTTCT-GTTGT
AAATATACCGAAGTTCACCTCGTGCTTCTACGTACTGCATCCAAGTTCTTCCACGCTAGTTC-CTTCAGAATTGTTTCCA
TTCTTCGTGAGACTCGGCATGGAAATCCGCAGAAAACACCGGCAAATCGGGCATGTCATTGCCAGACCCGGAGGATGCGC
CTCGGGCAAGGCAACGGCCAGCGGATGAGACGGGAGGCACAGATCGACTCAGGAAGCCAACGTTGACTCGGAAGTAGCAT
AGCATAGGTCGCATCCCGGCATCCGCATGTGTATCTTCTCAGAATGAAGACGAGATCCGCATCTGTCA------------
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>chr5A_512
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--------------------------------------TA--GATAGAGAATGTGGCCGCGGAAAGGTGATCAACCTCTT
CTTTTTATCACTGACAGTGGGCCACCACCACCATATCCGTCCGCCGAGTCAGTGACCACTCCACACGTTTTCTTTTCTTT
TCTTTTCTTTTTTTGTCCCAGGAGAAAGGAAAGGAGGCTGGCAAACGAAAGCAAAATGGCGCGCACTCGCACGATTAATC
CATGTGTCGAAAGAAAAGGAGCCGCCGTGGCGTGCCTTTCCAAAACAGTTGAAACGGCGAC-GCGCTCCGCTCGGAAGCC
ACCCCACGTCTC-----CGGCCCGCCGCCGTCGCTCTCCCGCCAAAATCGATCCGCAAGCAAACCCAGACCCGACAACCT
TGGCTGACCTCCTCTGCCACCACCCGCATACCTACCGCTATATAAACCGCGGTCGCCGCGCCAAGAGACTGCAG------
-------CCAATACGTGCAGTGCAGGTGCAGCAGATTAACAATTCAGC----TCGTGCGTGCGTGCTCATCCACGGCCAT
GGTGAGATCGCTTCCGTCTGTCTCGATGGAGGGGAGGAGGCTGGAGGAGGAGGAG---GAGCAGGAGCAGCGGGAGGTGC
TGCTCATCCACAGCCAGGTGCGGAGGATCAAGCGGGAGGACGAGGAGACCCGGAGGCAGCTCCTCAAGCTGCAGCTGCTG
GAGACGAGGCCGGCCGCCGGGCACGGGCACGGGCAGGAGGCCTCGCCGCTGGCCTCCCGCTCTCTGTCGCCGCTGCGGCG
CGCCGGGGGCGCCATACCGGTCGGCGACTGGGCCTAGTCACCTCGCCTGGCCGGCCCGCCGGCGTAGACA----TATAGA
TATAGGAGAGCGAGCGAGCTATATATGTGAGAGCCATAGTACGATCGATCGATGCCTGTCCATGCTCTCTGCGTGCATGG
AACCAGAGCTTA--TGGTTGATCGATCGATGTAGCTGCTTTACATGCTCTGTTTCAGTCGACTTTTCTTCTTCT-GTTGT
AAATATACCGAAGTTCACATCGTGCTTCTACGTACCGCATCCAAGTTCTTCCATTGCTACCGTCTTCAGAATTGATCGAT
TCTTG-GTGAGATTGGGCACGAAAATCCGCAGAAAGCACCGGCAAATC----------------------GAGGATGCGC
CTCAGGCAAGGCAACGGCCAGCGGACGAGACGGGAGGCACAGATCGACTGAGGTAGCCAACGTTGACTCGGAAGTAGTAT
AGGTCGCGTTCGCATCCGAAG-------GTGTATCTTCTCAGAATGAAGACGAGATCCGCATCTGTCAGGTAGG------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
S---------S--S----S-----SS-------S---SSS--S----------SS-----------SSSSSS--------
---------S-S----S----------S---S---------------S-------S---S--S-S--SS--SS-S-----
-SS-SS--------S-------S----S-----S------S-S-SSS--SS----S-S-S---------S----------
-----------S-S-------------------S---S-SS-------S-S-----------------------------
-------------------S----S---S---------------------------------------------------
------------------S------S------------------S-----------------------------------
-------------------------------S------------------------------------------------
----------------------------------S-----S--------------------S------------------
----------------------------------------S---------------------------------------
----------------------------------------------S-----------------S---------------
----------------S------------------------------SSSSS----------------------------
------S------------------------------------S-----S-----SSS----------------------
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S------------------------------------------------S----------------S---SSSS------
--------------------------S--------S-------S------------------------------------
---------------S----------------------------------------------------------S-----
---------------------------------------------------------------------S--------S-
--------SS-------S-------------------S----------------------S---SS---------S----
------------------------------S-S-----------------------------------------------
---------------------------------------------S----------S-------------S---SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_325
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-----------------------------------------------------------------AAACTTCATCGAAGC
GGGGT---------------------------------------------------------------------------
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>reverse_1911
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----------------------------------------------------------------------GACCTTTTTG
TGTGACGCCC----------------------------------------------------------------------
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