Multiple sequence alignment - TraesCS5B01G201800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G201800 chr5B 100.000 3508 0 0 1 3508 366014096 366010589 0.000000e+00 6479.0
1 TraesCS5B01G201800 chr5B 86.905 84 10 1 543 625 94277679 94277596 3.730000e-15 93.5
2 TraesCS5B01G201800 chr5B 82.243 107 14 5 524 625 639683975 639684081 1.730000e-13 87.9
3 TraesCS5B01G201800 chr5B 83.000 100 11 6 532 628 706720576 706720480 6.240000e-13 86.1
4 TraesCS5B01G201800 chr5D 87.321 1680 137 27 1 1638 316251137 316249492 0.000000e+00 1853.0
5 TraesCS5B01G201800 chr5D 93.450 626 34 7 2117 2737 316249236 316248613 0.000000e+00 922.0
6 TraesCS5B01G201800 chr5D 85.366 656 46 15 2854 3508 316247144 316246538 4.940000e-178 634.0
7 TraesCS5B01G201800 chr5D 85.897 156 11 7 1887 2042 316249390 316249246 4.690000e-34 156.0
8 TraesCS5B01G201800 chr5D 79.556 225 39 6 61 281 202847910 202848131 1.690000e-33 154.0
9 TraesCS5B01G201800 chr5A 93.995 766 46 0 873 1638 410807237 410806472 0.000000e+00 1160.0
10 TraesCS5B01G201800 chr5A 91.833 502 29 7 2117 2610 410806158 410805661 0.000000e+00 689.0
11 TraesCS5B01G201800 chr5A 86.053 337 25 7 3085 3421 410804748 410804434 3.350000e-90 342.0
12 TraesCS5B01G201800 chr5A 87.778 90 3 1 3419 3508 410804321 410804240 8.010000e-17 99.0
13 TraesCS5B01G201800 chr5A 90.566 53 1 4 2600 2648 410805280 410805228 2.260000e-07 67.6
14 TraesCS5B01G201800 chr7D 76.372 419 70 16 61 457 134524895 134524484 7.680000e-47 198.0
15 TraesCS5B01G201800 chr7D 80.088 226 38 6 61 281 139868899 139869122 1.010000e-35 161.0
16 TraesCS5B01G201800 chr7D 85.714 91 11 2 536 625 86891517 86891606 1.040000e-15 95.3
17 TraesCS5B01G201800 chr7D 96.000 50 2 0 2070 2119 634072835 634072884 8.070000e-12 82.4
18 TraesCS5B01G201800 chr7D 92.453 53 4 0 2067 2119 55371433 55371485 3.750000e-10 76.8
19 TraesCS5B01G201800 chr2B 83.019 212 31 5 61 269 26562855 26563064 1.660000e-43 187.0
20 TraesCS5B01G201800 chr2B 80.913 241 32 11 61 294 39783575 39783808 1.000000e-40 178.0
21 TraesCS5B01G201800 chr2B 86.747 83 9 2 543 624 642971364 642971445 1.340000e-14 91.6
22 TraesCS5B01G201800 chr2B 94.340 53 3 0 2067 2119 58986988 58987040 8.070000e-12 82.4
23 TraesCS5B01G201800 chr2B 92.453 53 4 0 2067 2119 148404593 148404541 3.750000e-10 76.8
24 TraesCS5B01G201800 chr2B 91.837 49 2 2 1 49 6194627 6194581 2.260000e-07 67.6
25 TraesCS5B01G201800 chr3B 81.690 213 30 7 61 268 494400466 494400258 6.020000e-38 169.0
26 TraesCS5B01G201800 chr3B 81.043 211 36 4 61 269 792179537 792179329 7.790000e-37 165.0
27 TraesCS5B01G201800 chr3B 80.734 218 29 8 419 623 186756045 186755828 1.300000e-34 158.0
28 TraesCS5B01G201800 chr3B 89.394 66 5 2 1 65 684455803 684455739 8.070000e-12 82.4
29 TraesCS5B01G201800 chr6B 79.916 239 33 10 61 294 297291405 297291633 1.010000e-35 161.0
30 TraesCS5B01G201800 chr3A 80.180 222 39 3 66 283 738948257 738948477 1.010000e-35 161.0
31 TraesCS5B01G201800 chr7A 82.090 134 17 6 503 632 24476277 24476147 1.330000e-19 108.0
32 TraesCS5B01G201800 chr2D 85.185 108 11 4 520 623 16500338 16500444 4.790000e-19 106.0
33 TraesCS5B01G201800 chr2D 81.481 81 9 5 443 519 470135049 470134971 1.050000e-05 62.1
34 TraesCS5B01G201800 chr4A 82.114 123 19 3 289 408 511238544 511238422 6.190000e-18 102.0
35 TraesCS5B01G201800 chr1A 94.340 53 3 0 2067 2119 62352699 62352751 8.070000e-12 82.4
36 TraesCS5B01G201800 chr1A 92.683 41 3 0 335 375 165195175 165195135 3.780000e-05 60.2
37 TraesCS5B01G201800 chr1D 92.593 54 4 0 2066 2119 106368673 106368620 1.040000e-10 78.7
38 TraesCS5B01G201800 chr1D 87.097 62 4 4 463 523 40242660 40242718 2.260000e-07 67.6
39 TraesCS5B01G201800 chr7B 92.453 53 4 0 2067 2119 21200139 21200087 3.750000e-10 76.8
40 TraesCS5B01G201800 chr7B 81.707 82 13 2 786 867 467073405 467073484 2.260000e-07 67.6
41 TraesCS5B01G201800 chr7B 87.273 55 4 2 485 539 595784399 595784450 3.780000e-05 60.2
42 TraesCS5B01G201800 chr4D 92.453 53 4 0 2067 2119 45923796 45923848 3.750000e-10 76.8
43 TraesCS5B01G201800 chr3D 80.180 111 15 4 420 523 1520179 1520069 3.750000e-10 76.8
44 TraesCS5B01G201800 chr1B 92.453 53 4 0 2067 2119 226316794 226316846 3.750000e-10 76.8
45 TraesCS5B01G201800 chrUn 85.455 55 5 3 485 539 41541260 41541311 2.000000e-03 54.7
46 TraesCS5B01G201800 chrUn 85.455 55 5 3 485 539 41544540 41544591 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G201800 chr5B 366010589 366014096 3507 True 6479.00 6479 100.0000 1 3508 1 chr5B.!!$R2 3507
1 TraesCS5B01G201800 chr5D 316246538 316251137 4599 True 891.25 1853 88.0085 1 3508 4 chr5D.!!$R1 3507
2 TraesCS5B01G201800 chr5A 410804240 410807237 2997 True 471.52 1160 90.0450 873 3508 5 chr5A.!!$R1 2635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.034896 GTGCCTCTCACGGAAGGAAA 59.965 55.0 0.0 0.0 35.76 3.13 F
1099 1140 0.041238 TCCTCCCACTCATCTTCCGT 59.959 55.0 0.0 0.0 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2069 2211 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.0 13.64 0.0 46.06 2.59 R
2888 5031 0.029059 AGGGGGCATAGGGTATGTGT 60.029 55.0 0.00 0.0 38.43 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.038033 GCGTCGAGATCTTCAAAACTAGAT 58.962 41.667 0.00 0.00 0.00 1.98
25 26 6.491394 CGTCGAGATCTTCAAAACTAGATCT 58.509 40.000 12.93 12.93 46.88 2.75
26 27 7.631822 CGTCGAGATCTTCAAAACTAGATCTA 58.368 38.462 13.02 1.69 45.01 1.98
76 77 1.270625 ACGAAAAATCCGTGCCTCTCA 60.271 47.619 0.00 0.00 38.97 3.27
77 78 1.128692 CGAAAAATCCGTGCCTCTCAC 59.871 52.381 0.00 0.00 42.23 3.51
86 87 0.034896 GTGCCTCTCACGGAAGGAAA 59.965 55.000 0.00 0.00 35.76 3.13
146 147 2.741092 GTGCCTCTCACGGAACCA 59.259 61.111 0.00 0.00 35.76 3.67
147 148 1.070786 GTGCCTCTCACGGAACCAA 59.929 57.895 0.00 0.00 35.76 3.67
148 149 0.534203 GTGCCTCTCACGGAACCAAA 60.534 55.000 0.00 0.00 35.76 3.28
149 150 0.181587 TGCCTCTCACGGAACCAAAA 59.818 50.000 0.00 0.00 0.00 2.44
150 151 1.202879 TGCCTCTCACGGAACCAAAAT 60.203 47.619 0.00 0.00 0.00 1.82
151 152 2.039216 TGCCTCTCACGGAACCAAAATA 59.961 45.455 0.00 0.00 0.00 1.40
152 153 2.678336 GCCTCTCACGGAACCAAAATAG 59.322 50.000 0.00 0.00 0.00 1.73
153 154 3.868754 GCCTCTCACGGAACCAAAATAGT 60.869 47.826 0.00 0.00 0.00 2.12
154 155 3.684788 CCTCTCACGGAACCAAAATAGTG 59.315 47.826 0.00 0.00 0.00 2.74
155 156 4.315803 CTCTCACGGAACCAAAATAGTGT 58.684 43.478 0.00 0.00 0.00 3.55
156 157 4.312443 TCTCACGGAACCAAAATAGTGTC 58.688 43.478 0.00 0.00 0.00 3.67
157 158 4.039973 TCTCACGGAACCAAAATAGTGTCT 59.960 41.667 0.00 0.00 0.00 3.41
158 159 4.312443 TCACGGAACCAAAATAGTGTCTC 58.688 43.478 0.00 0.00 0.00 3.36
159 160 4.039973 TCACGGAACCAAAATAGTGTCTCT 59.960 41.667 0.00 0.00 0.00 3.10
160 161 4.389077 CACGGAACCAAAATAGTGTCTCTC 59.611 45.833 0.00 0.00 0.00 3.20
161 162 3.612860 CGGAACCAAAATAGTGTCTCTCG 59.387 47.826 0.00 0.00 0.00 4.04
162 163 3.371285 GGAACCAAAATAGTGTCTCTCGC 59.629 47.826 0.00 0.00 0.00 5.03
163 164 3.678056 ACCAAAATAGTGTCTCTCGCA 57.322 42.857 0.00 0.00 0.00 5.10
173 174 1.867233 TGTCTCTCGCAGAAGCAAAAC 59.133 47.619 0.00 0.00 42.27 2.43
178 179 2.010817 CGCAGAAGCAAAACCGTGC 61.011 57.895 0.00 0.00 45.28 5.34
236 240 3.370840 TCATTTCTAAGTGGCATGGCT 57.629 42.857 21.08 2.50 0.00 4.75
309 327 3.963383 TTTTTCGTTTCTGAGAGCCAC 57.037 42.857 0.00 0.00 0.00 5.01
349 367 1.593196 CAAAACCTTGCCTCTCACGA 58.407 50.000 0.00 0.00 0.00 4.35
360 378 1.946768 CCTCTCACGAAAGCAAAACCA 59.053 47.619 0.00 0.00 0.00 3.67
365 383 3.482436 TCACGAAAGCAAAACCATACCT 58.518 40.909 0.00 0.00 0.00 3.08
448 470 1.803289 GGGAGCAAAATCGTGCCTC 59.197 57.895 0.00 0.00 46.14 4.70
453 475 0.874390 GCAAAATCGTGCCTCTCACA 59.126 50.000 0.00 0.00 45.92 3.58
454 476 1.266718 GCAAAATCGTGCCTCTCACAA 59.733 47.619 0.00 0.00 45.92 3.33
464 486 3.132111 GTGCCTCTCACAAAAGGGAAAAA 59.868 43.478 0.00 0.00 44.98 1.94
474 496 7.390027 TCACAAAAGGGAAAAAGAAAACATGA 58.610 30.769 0.00 0.00 0.00 3.07
476 498 9.323985 CACAAAAGGGAAAAAGAAAACATGATA 57.676 29.630 0.00 0.00 0.00 2.15
482 504 9.423061 AGGGAAAAAGAAAACATGATATTTTCG 57.577 29.630 0.00 0.00 46.23 3.46
483 505 8.168626 GGGAAAAAGAAAACATGATATTTTCGC 58.831 33.333 0.00 11.16 46.23 4.70
484 506 8.925700 GGAAAAAGAAAACATGATATTTTCGCT 58.074 29.630 0.00 0.00 46.23 4.93
487 509 9.474920 AAAAGAAAACATGATATTTTCGCTTCA 57.525 25.926 0.00 0.00 46.23 3.02
488 510 8.452989 AAGAAAACATGATATTTTCGCTTCAC 57.547 30.769 0.00 0.00 46.23 3.18
498 520 3.175240 CGCTTCACGAGAGGCACG 61.175 66.667 16.46 0.00 46.32 5.34
499 521 2.811317 GCTTCACGAGAGGCACGG 60.811 66.667 11.92 0.00 45.40 4.94
554 579 3.664025 TTCCTGAGATGCACGGCCG 62.664 63.158 26.86 26.86 0.00 6.13
586 611 3.455685 GCAAAAGCATGCACTCGC 58.544 55.556 21.98 13.22 45.70 5.03
597 622 0.863144 TGCACTCGCGGAAGTAAAAC 59.137 50.000 6.13 0.00 42.97 2.43
658 693 8.506168 TTCTCAAAGAAAAGCTAAGAAAGACA 57.494 30.769 0.00 0.00 29.99 3.41
660 695 7.987458 TCTCAAAGAAAAGCTAAGAAAGACAGA 59.013 33.333 0.00 0.00 0.00 3.41
663 698 8.562892 CAAAGAAAAGCTAAGAAAGACAGATGA 58.437 33.333 0.00 0.00 0.00 2.92
667 702 9.905171 GAAAAGCTAAGAAAGACAGATGAAAAT 57.095 29.630 0.00 0.00 0.00 1.82
718 758 3.688673 TCTAAAAACCCGAAAACACGTGT 59.311 39.130 17.22 17.22 0.00 4.49
761 801 6.830873 AAAATCCAGAGAAAATGTCCAGAG 57.169 37.500 0.00 0.00 0.00 3.35
763 803 2.005451 CCAGAGAAAATGTCCAGAGCG 58.995 52.381 0.00 0.00 0.00 5.03
773 813 2.190841 TCCAGAGCGTGACACGTGA 61.191 57.895 27.32 14.10 44.73 4.35
779 819 4.967730 CGTGACACGTGACGGCGA 62.968 66.667 25.01 0.00 36.57 5.54
780 820 2.430244 GTGACACGTGACGGCGAT 60.430 61.111 25.01 0.00 35.59 4.58
784 824 1.076533 GACACGTGACGGCGATTGAT 61.077 55.000 25.01 0.00 35.59 2.57
788 828 1.846648 GTGACGGCGATTGATAGCG 59.153 57.895 16.62 0.00 35.98 4.26
798 838 1.457303 GATTGATAGCGCGCTAAGTGG 59.543 52.381 40.90 0.00 31.73 4.00
809 849 2.196295 GCTAAGTGGCGTACTCTCAG 57.804 55.000 0.00 0.00 39.18 3.35
817 857 2.722201 CGTACTCTCAGCCCACCCC 61.722 68.421 0.00 0.00 0.00 4.95
826 866 2.124695 GCCCACCCCGAAGTGATC 60.125 66.667 6.38 0.00 40.34 2.92
838 878 0.250513 AAGTGATCGTTGGGAGGCTC 59.749 55.000 5.78 5.78 0.00 4.70
840 880 2.107141 GATCGTTGGGAGGCTCCG 59.893 66.667 26.54 15.31 37.43 4.63
1099 1140 0.041238 TCCTCCCACTCATCTTCCGT 59.959 55.000 0.00 0.00 0.00 4.69
1119 1160 4.095400 AGGAGGATGCTCCCCCGT 62.095 66.667 28.05 8.31 44.37 5.28
1142 1183 0.530744 TACTCTGCGGCTTCGTCAAT 59.469 50.000 0.00 0.00 36.07 2.57
1148 1189 2.398554 CGGCTTCGTCAATGGTGGG 61.399 63.158 0.00 0.00 0.00 4.61
1154 1195 2.283101 GTCAATGGTGGGCAGCCA 60.283 61.111 15.19 1.79 40.68 4.75
1158 1199 3.150903 AATGGTGGGCAGCCACTGT 62.151 57.895 15.19 0.50 39.03 3.55
1198 1239 4.736896 GACACGCCCCGGTGAGAC 62.737 72.222 0.00 0.00 40.38 3.36
1260 1301 3.164977 TGGCGTGGACAAGGGACA 61.165 61.111 0.00 0.00 0.00 4.02
1572 1613 3.119495 GCCGTCCTTGTTATTTCAGCAAT 60.119 43.478 0.00 0.00 0.00 3.56
1635 1676 4.817987 CGTCTAACGTTTCATCACGATT 57.182 40.909 5.91 0.00 43.15 3.34
1636 1677 4.555801 CGTCTAACGTTTCATCACGATTG 58.444 43.478 5.91 0.00 43.15 2.67
1637 1678 4.323751 GTCTAACGTTTCATCACGATTGC 58.676 43.478 5.91 0.00 43.15 3.56
1638 1679 2.611974 AACGTTTCATCACGATTGCC 57.388 45.000 0.00 0.00 43.15 4.52
1639 1680 1.518325 ACGTTTCATCACGATTGCCA 58.482 45.000 0.00 0.00 43.15 4.92
1640 1681 1.876799 ACGTTTCATCACGATTGCCAA 59.123 42.857 0.00 0.00 43.15 4.52
1641 1682 2.095768 ACGTTTCATCACGATTGCCAAG 60.096 45.455 0.00 0.00 43.15 3.61
1642 1683 2.253603 GTTTCATCACGATTGCCAAGC 58.746 47.619 0.00 0.00 0.00 4.01
1643 1684 0.810648 TTCATCACGATTGCCAAGCC 59.189 50.000 0.00 0.00 0.00 4.35
1644 1685 1.031571 TCATCACGATTGCCAAGCCC 61.032 55.000 0.00 0.00 0.00 5.19
1645 1686 1.754234 ATCACGATTGCCAAGCCCC 60.754 57.895 0.00 0.00 0.00 5.80
1646 1687 2.497792 ATCACGATTGCCAAGCCCCA 62.498 55.000 0.00 0.00 0.00 4.96
1647 1688 2.676471 ACGATTGCCAAGCCCCAC 60.676 61.111 0.00 0.00 0.00 4.61
1648 1689 2.361610 CGATTGCCAAGCCCCACT 60.362 61.111 0.00 0.00 0.00 4.00
1649 1690 2.409870 CGATTGCCAAGCCCCACTC 61.410 63.158 0.00 0.00 0.00 3.51
1650 1691 1.000396 GATTGCCAAGCCCCACTCT 60.000 57.895 0.00 0.00 0.00 3.24
1660 1701 1.871126 GCCCCACTCTTCTTGCTTGC 61.871 60.000 0.00 0.00 0.00 4.01
1661 1702 1.580845 CCCCACTCTTCTTGCTTGCG 61.581 60.000 0.00 0.00 0.00 4.85
1663 1704 1.446907 CCACTCTTCTTGCTTGCGAT 58.553 50.000 0.00 0.00 0.00 4.58
1676 1717 2.406357 GCTTGCGATGCTTCTTGTTTTC 59.594 45.455 0.00 0.00 0.00 2.29
1677 1718 3.631144 CTTGCGATGCTTCTTGTTTTCA 58.369 40.909 0.00 0.00 0.00 2.69
1679 1720 1.981533 GCGATGCTTCTTGTTTTCAGC 59.018 47.619 0.00 0.00 0.00 4.26
1680 1721 2.589014 CGATGCTTCTTGTTTTCAGCC 58.411 47.619 0.00 0.00 0.00 4.85
1681 1722 2.227388 CGATGCTTCTTGTTTTCAGCCT 59.773 45.455 0.00 0.00 0.00 4.58
1683 1771 2.378038 TGCTTCTTGTTTTCAGCCTGT 58.622 42.857 0.00 0.00 0.00 4.00
1686 1774 3.699067 CTTCTTGTTTTCAGCCTGTGTG 58.301 45.455 0.00 0.00 0.00 3.82
1691 1779 1.610522 GTTTTCAGCCTGTGTGCATCT 59.389 47.619 0.00 0.00 0.00 2.90
1693 1781 1.527034 TTCAGCCTGTGTGCATCTTC 58.473 50.000 0.00 0.00 0.00 2.87
1699 1787 2.611292 GCCTGTGTGCATCTTCAGTATC 59.389 50.000 0.00 0.00 0.00 2.24
1700 1788 3.201290 CCTGTGTGCATCTTCAGTATCC 58.799 50.000 0.00 0.00 0.00 2.59
1702 1790 3.599343 TGTGTGCATCTTCAGTATCCAC 58.401 45.455 0.00 0.00 0.00 4.02
1703 1791 3.261643 TGTGTGCATCTTCAGTATCCACT 59.738 43.478 0.00 0.00 34.42 4.00
1706 1794 4.711846 TGTGCATCTTCAGTATCCACTACT 59.288 41.667 0.00 0.00 41.53 2.57
1707 1795 5.891551 TGTGCATCTTCAGTATCCACTACTA 59.108 40.000 0.00 0.00 38.68 1.82
1709 1797 6.039941 GTGCATCTTCAGTATCCACTACTACT 59.960 42.308 0.00 0.00 38.68 2.57
1710 1798 6.607600 TGCATCTTCAGTATCCACTACTACTT 59.392 38.462 0.00 0.00 38.68 2.24
1711 1799 7.142680 GCATCTTCAGTATCCACTACTACTTC 58.857 42.308 0.00 0.00 38.68 3.01
1712 1800 7.653647 CATCTTCAGTATCCACTACTACTTCC 58.346 42.308 0.00 0.00 38.68 3.46
1713 1801 6.971340 TCTTCAGTATCCACTACTACTTCCT 58.029 40.000 0.00 0.00 38.68 3.36
1714 1802 7.055378 TCTTCAGTATCCACTACTACTTCCTC 58.945 42.308 0.00 0.00 38.68 3.71
1715 1803 6.578313 TCAGTATCCACTACTACTTCCTCT 57.422 41.667 0.00 0.00 38.68 3.69
1716 1804 6.358178 TCAGTATCCACTACTACTTCCTCTG 58.642 44.000 0.00 0.00 38.68 3.35
1717 1805 5.533154 CAGTATCCACTACTACTTCCTCTGG 59.467 48.000 0.00 0.00 38.68 3.86
1718 1806 4.611564 ATCCACTACTACTTCCTCTGGT 57.388 45.455 0.00 0.00 0.00 4.00
1719 1807 3.698289 TCCACTACTACTTCCTCTGGTG 58.302 50.000 0.00 0.00 0.00 4.17
1720 1808 3.075582 TCCACTACTACTTCCTCTGGTGT 59.924 47.826 0.00 0.00 0.00 4.16
1721 1809 3.193691 CCACTACTACTTCCTCTGGTGTG 59.806 52.174 0.00 0.00 0.00 3.82
1722 1810 3.193691 CACTACTACTTCCTCTGGTGTGG 59.806 52.174 0.00 0.00 0.00 4.17
1723 1811 0.977395 ACTACTTCCTCTGGTGTGGC 59.023 55.000 0.00 0.00 0.00 5.01
1724 1812 0.976641 CTACTTCCTCTGGTGTGGCA 59.023 55.000 0.00 0.00 0.00 4.92
1725 1813 0.685097 TACTTCCTCTGGTGTGGCAC 59.315 55.000 11.55 11.55 0.00 5.01
1726 1814 1.056700 ACTTCCTCTGGTGTGGCACT 61.057 55.000 19.83 0.00 34.40 4.40
1727 1815 0.976641 CTTCCTCTGGTGTGGCACTA 59.023 55.000 19.83 2.23 34.40 2.74
1728 1816 1.556911 CTTCCTCTGGTGTGGCACTAT 59.443 52.381 19.83 0.00 34.40 2.12
1729 1817 1.656587 TCCTCTGGTGTGGCACTATT 58.343 50.000 19.83 0.00 34.40 1.73
1730 1818 1.985159 TCCTCTGGTGTGGCACTATTT 59.015 47.619 19.83 0.00 34.40 1.40
1731 1819 2.027192 TCCTCTGGTGTGGCACTATTTC 60.027 50.000 19.83 4.47 34.40 2.17
1732 1820 2.002586 CTCTGGTGTGGCACTATTTCG 58.997 52.381 19.83 2.80 34.40 3.46
1733 1821 1.346395 TCTGGTGTGGCACTATTTCGT 59.654 47.619 19.83 0.00 34.40 3.85
1734 1822 2.563620 TCTGGTGTGGCACTATTTCGTA 59.436 45.455 19.83 0.00 34.40 3.43
1735 1823 2.671396 CTGGTGTGGCACTATTTCGTAC 59.329 50.000 19.83 5.56 34.40 3.67
1736 1824 2.300723 TGGTGTGGCACTATTTCGTACT 59.699 45.455 19.83 0.00 34.40 2.73
1737 1825 3.510753 TGGTGTGGCACTATTTCGTACTA 59.489 43.478 19.83 0.62 34.40 1.82
1738 1826 4.110482 GGTGTGGCACTATTTCGTACTAG 58.890 47.826 19.83 0.00 34.40 2.57
1739 1827 4.381292 GGTGTGGCACTATTTCGTACTAGT 60.381 45.833 19.83 0.00 34.40 2.57
1740 1828 5.163622 GGTGTGGCACTATTTCGTACTAGTA 60.164 44.000 19.83 0.00 34.40 1.82
1741 1829 6.460676 GGTGTGGCACTATTTCGTACTAGTAT 60.461 42.308 19.83 0.00 34.40 2.12
1742 1830 6.976925 GTGTGGCACTATTTCGTACTAGTATT 59.023 38.462 19.83 0.00 0.00 1.89
1743 1831 7.490402 GTGTGGCACTATTTCGTACTAGTATTT 59.510 37.037 19.83 0.00 0.00 1.40
1744 1832 8.685427 TGTGGCACTATTTCGTACTAGTATTTA 58.315 33.333 19.83 0.00 0.00 1.40
1745 1833 8.962111 GTGGCACTATTTCGTACTAGTATTTAC 58.038 37.037 11.13 0.00 0.00 2.01
1746 1834 8.906867 TGGCACTATTTCGTACTAGTATTTACT 58.093 33.333 5.75 0.00 40.24 2.24
1747 1835 9.392021 GGCACTATTTCGTACTAGTATTTACTC 57.608 37.037 5.75 0.00 37.73 2.59
1748 1836 9.941664 GCACTATTTCGTACTAGTATTTACTCA 57.058 33.333 5.75 0.00 37.73 3.41
1756 1844 9.941664 TCGTACTAGTATTTACTCACATAAAGC 57.058 33.333 5.75 0.00 37.73 3.51
1757 1845 9.178427 CGTACTAGTATTTACTCACATAAAGCC 57.822 37.037 5.75 0.00 37.73 4.35
1758 1846 9.473640 GTACTAGTATTTACTCACATAAAGCCC 57.526 37.037 5.75 0.00 37.73 5.19
1759 1847 8.320338 ACTAGTATTTACTCACATAAAGCCCT 57.680 34.615 0.00 0.00 37.73 5.19
1760 1848 8.204836 ACTAGTATTTACTCACATAAAGCCCTG 58.795 37.037 0.00 0.00 37.73 4.45
1761 1849 7.195374 AGTATTTACTCACATAAAGCCCTGA 57.805 36.000 0.00 0.00 0.00 3.86
1762 1850 7.630082 AGTATTTACTCACATAAAGCCCTGAA 58.370 34.615 0.00 0.00 0.00 3.02
1763 1851 8.107095 AGTATTTACTCACATAAAGCCCTGAAA 58.893 33.333 0.00 0.00 0.00 2.69
1764 1852 7.961326 ATTTACTCACATAAAGCCCTGAAAT 57.039 32.000 0.00 0.00 0.00 2.17
1765 1853 7.775053 TTTACTCACATAAAGCCCTGAAATT 57.225 32.000 0.00 0.00 0.00 1.82
1766 1854 5.904362 ACTCACATAAAGCCCTGAAATTC 57.096 39.130 0.00 0.00 0.00 2.17
1767 1855 5.574188 ACTCACATAAAGCCCTGAAATTCT 58.426 37.500 0.00 0.00 0.00 2.40
1768 1856 5.649831 ACTCACATAAAGCCCTGAAATTCTC 59.350 40.000 0.00 0.00 0.00 2.87
1769 1857 5.569355 TCACATAAAGCCCTGAAATTCTCA 58.431 37.500 0.00 0.00 0.00 3.27
1770 1858 6.189859 TCACATAAAGCCCTGAAATTCTCAT 58.810 36.000 0.00 0.00 32.14 2.90
1771 1859 7.345691 TCACATAAAGCCCTGAAATTCTCATA 58.654 34.615 0.00 0.00 32.14 2.15
1772 1860 7.833682 TCACATAAAGCCCTGAAATTCTCATAA 59.166 33.333 0.00 0.00 32.14 1.90
1773 1861 8.469200 CACATAAAGCCCTGAAATTCTCATAAA 58.531 33.333 0.00 0.00 32.14 1.40
1774 1862 9.034800 ACATAAAGCCCTGAAATTCTCATAAAA 57.965 29.630 0.00 0.00 32.14 1.52
1775 1863 9.874205 CATAAAGCCCTGAAATTCTCATAAAAA 57.126 29.630 0.00 0.00 32.14 1.94
1778 1866 6.799512 AGCCCTGAAATTCTCATAAAAATCG 58.200 36.000 0.00 0.00 32.14 3.34
1779 1867 5.979517 GCCCTGAAATTCTCATAAAAATCGG 59.020 40.000 0.00 0.00 32.14 4.18
1780 1868 5.979517 CCCTGAAATTCTCATAAAAATCGGC 59.020 40.000 0.00 0.00 32.14 5.54
1781 1869 6.405731 CCCTGAAATTCTCATAAAAATCGGCA 60.406 38.462 0.00 0.00 32.14 5.69
1782 1870 6.694411 CCTGAAATTCTCATAAAAATCGGCAG 59.306 38.462 0.00 0.00 32.14 4.85
1783 1871 6.035843 TGAAATTCTCATAAAAATCGGCAGC 58.964 36.000 0.00 0.00 0.00 5.25
1784 1872 5.581126 AATTCTCATAAAAATCGGCAGCA 57.419 34.783 0.00 0.00 0.00 4.41
1785 1873 5.779529 ATTCTCATAAAAATCGGCAGCAT 57.220 34.783 0.00 0.00 0.00 3.79
1786 1874 4.818534 TCTCATAAAAATCGGCAGCATC 57.181 40.909 0.00 0.00 0.00 3.91
1787 1875 4.198530 TCTCATAAAAATCGGCAGCATCA 58.801 39.130 0.00 0.00 0.00 3.07
1788 1876 4.274214 TCTCATAAAAATCGGCAGCATCAG 59.726 41.667 0.00 0.00 0.00 2.90
1789 1877 2.849880 TAAAAATCGGCAGCATCAGC 57.150 45.000 0.00 0.00 42.56 4.26
1800 1888 3.238232 GCATCAGCTCTGGTTCACA 57.762 52.632 0.00 0.00 37.91 3.58
1801 1889 1.527034 GCATCAGCTCTGGTTCACAA 58.473 50.000 0.00 0.00 37.91 3.33
1802 1890 2.089980 GCATCAGCTCTGGTTCACAAT 58.910 47.619 0.00 0.00 37.91 2.71
1803 1891 3.273434 GCATCAGCTCTGGTTCACAATA 58.727 45.455 0.00 0.00 37.91 1.90
1804 1892 3.311871 GCATCAGCTCTGGTTCACAATAG 59.688 47.826 0.00 0.00 37.91 1.73
1805 1893 4.763073 CATCAGCTCTGGTTCACAATAGA 58.237 43.478 0.00 0.00 0.00 1.98
1806 1894 4.890158 TCAGCTCTGGTTCACAATAGAA 57.110 40.909 0.00 0.00 0.00 2.10
1807 1895 4.569943 TCAGCTCTGGTTCACAATAGAAC 58.430 43.478 0.00 0.00 45.50 3.01
1808 1896 3.369147 CAGCTCTGGTTCACAATAGAACG 59.631 47.826 0.00 0.00 46.81 3.95
1809 1897 2.673368 GCTCTGGTTCACAATAGAACGG 59.327 50.000 0.00 0.00 46.81 4.44
1810 1898 3.864921 GCTCTGGTTCACAATAGAACGGT 60.865 47.826 0.00 0.00 46.81 4.83
1811 1899 4.619863 GCTCTGGTTCACAATAGAACGGTA 60.620 45.833 0.00 0.00 46.81 4.02
1812 1900 5.068234 TCTGGTTCACAATAGAACGGTAG 57.932 43.478 0.00 0.00 46.81 3.18
1813 1901 4.525487 TCTGGTTCACAATAGAACGGTAGT 59.475 41.667 0.00 0.00 46.81 2.73
1814 1902 5.711506 TCTGGTTCACAATAGAACGGTAGTA 59.288 40.000 0.00 0.00 46.81 1.82
1815 1903 5.957798 TGGTTCACAATAGAACGGTAGTAG 58.042 41.667 0.00 0.00 46.81 2.57
1816 1904 5.105635 TGGTTCACAATAGAACGGTAGTAGG 60.106 44.000 0.00 0.00 46.81 3.18
1817 1905 5.126061 GGTTCACAATAGAACGGTAGTAGGA 59.874 44.000 0.00 0.00 46.81 2.94
1818 1906 6.264088 GTTCACAATAGAACGGTAGTAGGAG 58.736 44.000 0.00 0.00 38.58 3.69
1819 1907 5.503927 TCACAATAGAACGGTAGTAGGAGT 58.496 41.667 0.00 0.00 0.00 3.85
1820 1908 6.653020 TCACAATAGAACGGTAGTAGGAGTA 58.347 40.000 0.00 0.00 0.00 2.59
1821 1909 7.112122 TCACAATAGAACGGTAGTAGGAGTAA 58.888 38.462 0.00 0.00 0.00 2.24
1822 1910 7.776969 TCACAATAGAACGGTAGTAGGAGTAAT 59.223 37.037 0.00 0.00 0.00 1.89
1823 1911 9.060347 CACAATAGAACGGTAGTAGGAGTAATA 57.940 37.037 0.00 0.00 0.00 0.98
1824 1912 9.632638 ACAATAGAACGGTAGTAGGAGTAATAA 57.367 33.333 0.00 0.00 0.00 1.40
1826 1914 9.859152 AATAGAACGGTAGTAGGAGTAATAAGT 57.141 33.333 0.00 0.00 0.00 2.24
1829 1917 9.282569 AGAACGGTAGTAGGAGTAATAAGTATG 57.717 37.037 0.00 0.00 0.00 2.39
1830 1918 7.446001 ACGGTAGTAGGAGTAATAAGTATGC 57.554 40.000 0.00 0.00 0.00 3.14
1831 1919 7.000472 ACGGTAGTAGGAGTAATAAGTATGCA 59.000 38.462 0.00 0.00 0.00 3.96
1832 1920 7.174599 ACGGTAGTAGGAGTAATAAGTATGCAG 59.825 40.741 0.00 0.00 0.00 4.41
1833 1921 7.174599 CGGTAGTAGGAGTAATAAGTATGCAGT 59.825 40.741 0.00 0.00 0.00 4.40
1834 1922 9.512588 GGTAGTAGGAGTAATAAGTATGCAGTA 57.487 37.037 0.00 0.00 0.00 2.74
1837 1925 9.643735 AGTAGGAGTAATAAGTATGCAGTAAGT 57.356 33.333 0.00 0.00 0.00 2.24
1840 1928 9.643735 AGGAGTAATAAGTATGCAGTAAGTACT 57.356 33.333 0.00 0.00 36.90 2.73
1847 1935 9.894783 ATAAGTATGCAGTAAGTACTTATGACG 57.105 33.333 20.92 8.46 44.09 4.35
1848 1936 7.563888 AGTATGCAGTAAGTACTTATGACGA 57.436 36.000 18.03 3.26 33.46 4.20
1849 1937 8.167605 AGTATGCAGTAAGTACTTATGACGAT 57.832 34.615 18.03 9.57 33.46 3.73
1850 1938 8.630917 AGTATGCAGTAAGTACTTATGACGATT 58.369 33.333 18.03 4.24 33.46 3.34
1851 1939 9.245962 GTATGCAGTAAGTACTTATGACGATTT 57.754 33.333 18.03 2.96 33.46 2.17
1852 1940 7.751047 TGCAGTAAGTACTTATGACGATTTC 57.249 36.000 18.03 2.73 33.46 2.17
1853 1941 7.317390 TGCAGTAAGTACTTATGACGATTTCA 58.683 34.615 18.03 6.82 34.52 2.69
1854 1942 7.488150 TGCAGTAAGTACTTATGACGATTTCAG 59.512 37.037 18.03 1.27 33.83 3.02
1855 1943 7.515371 GCAGTAAGTACTTATGACGATTTCAGC 60.515 40.741 18.03 7.07 33.83 4.26
1856 1944 7.702772 CAGTAAGTACTTATGACGATTTCAGCT 59.297 37.037 18.03 3.59 33.83 4.24
1857 1945 6.893958 AAGTACTTATGACGATTTCAGCTG 57.106 37.500 7.63 7.63 37.77 4.24
1858 1946 6.208988 AGTACTTATGACGATTTCAGCTGA 57.791 37.500 13.74 13.74 37.77 4.26
1859 1947 6.631016 AGTACTTATGACGATTTCAGCTGAA 58.369 36.000 25.16 25.16 37.77 3.02
1860 1948 6.754209 AGTACTTATGACGATTTCAGCTGAAG 59.246 38.462 27.02 18.87 37.77 3.02
1861 1949 4.331168 ACTTATGACGATTTCAGCTGAAGC 59.669 41.667 27.02 21.37 37.77 3.86
1873 1961 2.428888 GCTGAAGCTCCCAAAACTTG 57.571 50.000 0.00 0.00 38.21 3.16
1874 1962 1.956477 GCTGAAGCTCCCAAAACTTGA 59.044 47.619 0.00 0.00 38.21 3.02
1875 1963 2.287849 GCTGAAGCTCCCAAAACTTGAC 60.288 50.000 0.00 0.00 38.21 3.18
1876 1964 1.946768 TGAAGCTCCCAAAACTTGACG 59.053 47.619 0.00 0.00 0.00 4.35
1877 1965 0.668535 AAGCTCCCAAAACTTGACGC 59.331 50.000 0.00 0.00 0.00 5.19
1878 1966 0.465460 AGCTCCCAAAACTTGACGCA 60.465 50.000 0.00 0.00 0.00 5.24
1879 1967 0.383949 GCTCCCAAAACTTGACGCAA 59.616 50.000 0.00 0.00 0.00 4.85
1880 1968 1.202359 GCTCCCAAAACTTGACGCAAA 60.202 47.619 0.00 0.00 0.00 3.68
1881 1969 2.737039 GCTCCCAAAACTTGACGCAAAA 60.737 45.455 0.00 0.00 0.00 2.44
1882 1970 3.115554 CTCCCAAAACTTGACGCAAAAG 58.884 45.455 0.00 0.00 0.00 2.27
1883 1971 1.592543 CCCAAAACTTGACGCAAAAGC 59.407 47.619 0.00 0.00 0.00 3.51
1884 1972 2.539476 CCAAAACTTGACGCAAAAGCT 58.461 42.857 0.00 0.00 0.00 3.74
1885 1973 2.282290 CCAAAACTTGACGCAAAAGCTG 59.718 45.455 0.00 0.00 0.00 4.24
1896 1984 5.123661 TGACGCAAAAGCTGATCAATATTCA 59.876 36.000 0.00 0.00 0.00 2.57
1905 1993 9.905713 AAAGCTGATCAATATTCAGTAGGTTAA 57.094 29.630 0.00 0.00 42.12 2.01
1906 1994 9.553064 AAGCTGATCAATATTCAGTAGGTTAAG 57.447 33.333 0.00 0.00 42.12 1.85
1907 1995 7.659390 AGCTGATCAATATTCAGTAGGTTAAGC 59.341 37.037 0.00 0.00 42.12 3.09
1908 1996 7.659390 GCTGATCAATATTCAGTAGGTTAAGCT 59.341 37.037 12.54 12.54 42.12 3.74
1909 1997 8.893219 TGATCAATATTCAGTAGGTTAAGCTG 57.107 34.615 17.34 1.78 0.00 4.24
1910 1998 7.933577 TGATCAATATTCAGTAGGTTAAGCTGG 59.066 37.037 17.34 6.92 0.00 4.85
1911 1999 7.195374 TCAATATTCAGTAGGTTAAGCTGGT 57.805 36.000 17.34 1.19 0.00 4.00
1912 2000 8.313944 TCAATATTCAGTAGGTTAAGCTGGTA 57.686 34.615 17.34 1.67 0.00 3.25
1913 2001 8.202137 TCAATATTCAGTAGGTTAAGCTGGTAC 58.798 37.037 17.34 7.63 0.00 3.34
1945 2087 2.223456 CGTGCTGTCATTTGGTTGTTCA 60.223 45.455 0.00 0.00 0.00 3.18
1953 2095 4.917415 GTCATTTGGTTGTTCATTCCGAAG 59.083 41.667 0.00 0.00 33.09 3.79
1954 2096 4.824537 TCATTTGGTTGTTCATTCCGAAGA 59.175 37.500 0.00 0.00 33.09 2.87
1955 2097 5.476599 TCATTTGGTTGTTCATTCCGAAGAT 59.523 36.000 0.00 0.00 33.09 2.40
1960 2102 5.943416 TGGTTGTTCATTCCGAAGATGTAAT 59.057 36.000 0.00 0.00 33.09 1.89
1961 2103 6.093495 TGGTTGTTCATTCCGAAGATGTAATC 59.907 38.462 0.00 0.00 46.04 1.75
1994 2136 8.352942 AGATGTTCACCTTCAAAAATGAAGTAC 58.647 33.333 15.25 9.31 42.63 2.73
2043 2185 2.730094 GCAACAGGCACCAGGTTG 59.270 61.111 15.80 15.80 43.53 3.77
2044 2186 2.127232 GCAACAGGCACCAGGTTGT 61.127 57.895 19.16 0.00 42.84 3.32
2045 2187 1.675720 GCAACAGGCACCAGGTTGTT 61.676 55.000 19.16 2.66 42.84 2.83
2046 2188 0.385390 CAACAGGCACCAGGTTGTTC 59.615 55.000 5.30 0.00 37.66 3.18
2048 2190 0.185901 ACAGGCACCAGGTTGTTCAT 59.814 50.000 0.00 0.00 0.00 2.57
2051 2193 2.228822 CAGGCACCAGGTTGTTCATAAC 59.771 50.000 0.00 0.00 0.00 1.89
2052 2194 2.108250 AGGCACCAGGTTGTTCATAACT 59.892 45.455 0.00 0.00 0.00 2.24
2053 2195 3.329520 AGGCACCAGGTTGTTCATAACTA 59.670 43.478 0.00 0.00 0.00 2.24
2054 2196 3.439129 GGCACCAGGTTGTTCATAACTAC 59.561 47.826 0.00 0.00 36.58 2.73
2055 2197 4.324267 GCACCAGGTTGTTCATAACTACT 58.676 43.478 0.00 0.00 37.31 2.57
2056 2198 5.484715 GCACCAGGTTGTTCATAACTACTA 58.515 41.667 0.00 0.00 37.31 1.82
2057 2199 5.350640 GCACCAGGTTGTTCATAACTACTAC 59.649 44.000 0.00 0.00 37.31 2.73
2058 2200 6.698380 CACCAGGTTGTTCATAACTACTACT 58.302 40.000 0.00 0.00 37.31 2.57
2059 2201 7.578189 GCACCAGGTTGTTCATAACTACTACTA 60.578 40.741 0.00 0.00 37.31 1.82
2060 2202 8.475639 CACCAGGTTGTTCATAACTACTACTAT 58.524 37.037 0.00 0.00 37.31 2.12
2061 2203 9.043548 ACCAGGTTGTTCATAACTACTACTATT 57.956 33.333 0.00 0.00 37.31 1.73
2078 2220 8.709272 ACTACTATTATGAAAGTACTCCCTCC 57.291 38.462 0.00 0.00 0.00 4.30
2079 2221 6.651975 ACTATTATGAAAGTACTCCCTCCG 57.348 41.667 0.00 0.00 0.00 4.63
2080 2222 6.134754 ACTATTATGAAAGTACTCCCTCCGT 58.865 40.000 0.00 0.00 0.00 4.69
2081 2223 4.996788 TTATGAAAGTACTCCCTCCGTC 57.003 45.455 0.00 0.00 0.00 4.79
2082 2224 1.553706 TGAAAGTACTCCCTCCGTCC 58.446 55.000 0.00 0.00 0.00 4.79
2083 2225 0.455005 GAAAGTACTCCCTCCGTCCG 59.545 60.000 0.00 0.00 0.00 4.79
2084 2226 0.969409 AAAGTACTCCCTCCGTCCGG 60.969 60.000 0.00 0.00 0.00 5.14
2085 2227 1.856539 AAGTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
2086 2228 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
2087 2229 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
2088 2230 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2089 2231 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2090 2232 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2091 2233 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2092 2234 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2093 2235 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2094 2236 1.287425 CTCCGTCCGGAAATACTTGC 58.713 55.000 5.23 0.00 44.66 4.01
2095 2237 0.108041 TCCGTCCGGAAATACTTGCC 60.108 55.000 5.23 0.00 42.05 4.52
2096 2238 0.107848 CCGTCCGGAAATACTTGCCT 60.108 55.000 5.23 0.00 37.50 4.75
2097 2239 1.677820 CCGTCCGGAAATACTTGCCTT 60.678 52.381 5.23 0.00 37.50 4.35
2098 2240 1.664151 CGTCCGGAAATACTTGCCTTC 59.336 52.381 5.23 0.00 0.00 3.46
2099 2241 1.664151 GTCCGGAAATACTTGCCTTCG 59.336 52.381 5.23 0.00 0.00 3.79
2100 2242 1.551430 TCCGGAAATACTTGCCTTCGA 59.449 47.619 0.00 0.00 0.00 3.71
2101 2243 2.027929 TCCGGAAATACTTGCCTTCGAA 60.028 45.455 0.00 0.00 0.00 3.71
2102 2244 2.745281 CCGGAAATACTTGCCTTCGAAA 59.255 45.455 0.00 0.00 0.00 3.46
2103 2245 3.377172 CCGGAAATACTTGCCTTCGAAAT 59.623 43.478 0.00 0.00 0.00 2.17
2104 2246 4.342772 CGGAAATACTTGCCTTCGAAATG 58.657 43.478 0.00 0.00 0.00 2.32
2105 2247 4.094294 CGGAAATACTTGCCTTCGAAATGA 59.906 41.667 0.00 0.00 0.00 2.57
2106 2248 5.220854 CGGAAATACTTGCCTTCGAAATGAT 60.221 40.000 0.00 0.00 0.00 2.45
2107 2249 6.564328 GGAAATACTTGCCTTCGAAATGATT 58.436 36.000 0.00 0.00 0.00 2.57
2108 2250 6.473455 GGAAATACTTGCCTTCGAAATGATTG 59.527 38.462 0.00 0.00 0.00 2.67
2109 2251 6.515272 AATACTTGCCTTCGAAATGATTGT 57.485 33.333 0.00 0.00 0.00 2.71
2110 2252 7.624360 AATACTTGCCTTCGAAATGATTGTA 57.376 32.000 0.00 0.00 0.00 2.41
2111 2253 7.807977 ATACTTGCCTTCGAAATGATTGTAT 57.192 32.000 0.00 2.02 0.00 2.29
2112 2254 6.124088 ACTTGCCTTCGAAATGATTGTATC 57.876 37.500 0.00 0.00 0.00 2.24
2113 2255 5.882557 ACTTGCCTTCGAAATGATTGTATCT 59.117 36.000 0.00 0.00 0.00 1.98
2114 2256 7.047891 ACTTGCCTTCGAAATGATTGTATCTA 58.952 34.615 0.00 0.00 0.00 1.98
2115 2257 7.225538 ACTTGCCTTCGAAATGATTGTATCTAG 59.774 37.037 0.00 0.00 0.00 2.43
2150 2292 5.239525 GGTAGGCATGAATATGGTTCTTCAC 59.760 44.000 0.00 0.00 34.43 3.18
2164 2306 4.878397 GGTTCTTCACATAGGAACATGAGG 59.122 45.833 0.00 0.00 40.48 3.86
2173 2315 5.131142 ACATAGGAACATGAGGAAAGGGTAG 59.869 44.000 0.00 0.00 0.00 3.18
2227 2372 6.868339 CCGCAGATTTTTCTTTTTAGATGGTT 59.132 34.615 0.00 0.00 0.00 3.67
2252 2397 2.447244 ACTGAAACCAGAGCTCTTCG 57.553 50.000 15.27 9.86 35.67 3.79
2281 2426 9.979270 CATATTTTGCTTATTATCGATGACCTC 57.021 33.333 8.54 0.00 0.00 3.85
2300 2445 2.068519 TCGAAACATGTGCACAGCTAG 58.931 47.619 25.84 16.34 0.00 3.42
2301 2446 1.464687 CGAAACATGTGCACAGCTAGC 60.465 52.381 25.84 6.62 0.00 3.42
2315 2460 3.790091 CAGCTAGCTGCAGAATGTTAGA 58.210 45.455 30.62 0.00 45.94 2.10
2316 2461 4.378774 CAGCTAGCTGCAGAATGTTAGAT 58.621 43.478 30.62 6.27 45.94 1.98
2317 2462 4.815308 CAGCTAGCTGCAGAATGTTAGATT 59.185 41.667 30.62 0.00 45.94 2.40
2319 2464 6.481313 CAGCTAGCTGCAGAATGTTAGATTAA 59.519 38.462 30.62 0.00 45.94 1.40
2340 2485 9.695526 GATTAACATATTATTTGCAGCAATCCA 57.304 29.630 9.12 0.00 0.00 3.41
2406 2551 6.549364 TGGATTCTTTGGTTTTCTGCTAAGAA 59.451 34.615 0.00 0.00 40.76 2.52
2491 2636 8.537858 TCTACGGCTGTCTGTATAAGATAGATA 58.462 37.037 0.00 0.00 44.74 1.98
2525 2670 4.025040 TGATGAGAACCATGTGAAGCTT 57.975 40.909 0.00 0.00 35.17 3.74
2587 2738 0.537188 ACAACAGCGTAGATCAGGGG 59.463 55.000 0.00 0.00 0.00 4.79
2592 2743 1.115467 AGCGTAGATCAGGGGTTCAG 58.885 55.000 0.00 0.00 0.00 3.02
2631 3174 6.926272 TGGCATATGGTTTTGTTGTTAGTTTC 59.074 34.615 4.56 0.00 0.00 2.78
2632 3175 6.926272 GGCATATGGTTTTGTTGTTAGTTTCA 59.074 34.615 4.56 0.00 0.00 2.69
2633 3176 7.116233 GGCATATGGTTTTGTTGTTAGTTTCAG 59.884 37.037 4.56 0.00 0.00 3.02
2634 3177 7.651704 GCATATGGTTTTGTTGTTAGTTTCAGT 59.348 33.333 4.56 0.00 0.00 3.41
2635 3178 9.180678 CATATGGTTTTGTTGTTAGTTTCAGTC 57.819 33.333 0.00 0.00 0.00 3.51
2636 3179 6.576662 TGGTTTTGTTGTTAGTTTCAGTCA 57.423 33.333 0.00 0.00 0.00 3.41
2660 3205 3.633986 GACCCAAATCTTGCTTCATAGGG 59.366 47.826 0.00 0.00 39.66 3.53
2667 3212 0.107703 TTGCTTCATAGGGTCGCCTG 60.108 55.000 0.00 0.00 0.00 4.85
2668 3213 1.889573 GCTTCATAGGGTCGCCTGC 60.890 63.158 0.00 0.00 0.00 4.85
2669 3214 1.227674 CTTCATAGGGTCGCCTGCC 60.228 63.158 0.00 0.00 0.00 4.85
2716 3476 4.989168 CCACTAAGGCGGAGTATATTCAAC 59.011 45.833 0.00 0.00 0.00 3.18
2717 3477 5.452776 CCACTAAGGCGGAGTATATTCAACA 60.453 44.000 0.00 0.00 0.00 3.33
2737 3497 4.781934 ACATGAGCTCTTTTATGGTACCC 58.218 43.478 16.19 0.00 0.00 3.69
2739 3499 2.508300 TGAGCTCTTTTATGGTACCCCC 59.492 50.000 16.19 0.00 0.00 5.40
2740 3500 2.778270 GAGCTCTTTTATGGTACCCCCT 59.222 50.000 10.07 0.00 0.00 4.79
2746 3506 1.247600 TTATGGTACCCCCTCCCCCT 61.248 60.000 10.07 0.00 0.00 4.79
2747 3507 1.681994 TATGGTACCCCCTCCCCCTC 61.682 65.000 10.07 0.00 0.00 4.30
2749 3509 4.511137 GTACCCCCTCCCCCTCCC 62.511 77.778 0.00 0.00 0.00 4.30
2779 3541 3.948004 TTGGGGGCGCATGGGTAAC 62.948 63.158 10.83 2.46 0.00 2.50
2803 3565 7.676947 ACATGTCACACCAAAAGTATACTACT 58.323 34.615 5.65 0.00 41.73 2.57
2805 3567 6.460781 TGTCACACCAAAAGTATACTACTGG 58.539 40.000 22.85 22.85 39.39 4.00
2806 3568 6.268158 TGTCACACCAAAAGTATACTACTGGA 59.732 38.462 27.94 11.75 39.39 3.86
2807 3569 7.038587 TGTCACACCAAAAGTATACTACTGGAT 60.039 37.037 27.94 17.69 39.39 3.41
2808 3570 7.822822 GTCACACCAAAAGTATACTACTGGATT 59.177 37.037 27.94 16.68 39.39 3.01
2809 3571 8.038944 TCACACCAAAAGTATACTACTGGATTC 58.961 37.037 27.94 0.00 39.39 2.52
2810 3572 7.822334 CACACCAAAAGTATACTACTGGATTCA 59.178 37.037 27.94 0.00 39.39 2.57
2811 3573 8.548877 ACACCAAAAGTATACTACTGGATTCAT 58.451 33.333 27.94 11.48 39.39 2.57
2888 5031 1.557099 AGTCAGATTGCCGACCTACA 58.443 50.000 0.00 0.00 32.33 2.74
2899 5042 2.658285 CCGACCTACACACATACCCTA 58.342 52.381 0.00 0.00 0.00 3.53
2900 5043 3.228453 CCGACCTACACACATACCCTAT 58.772 50.000 0.00 0.00 0.00 2.57
2901 5044 3.005472 CCGACCTACACACATACCCTATG 59.995 52.174 0.00 0.00 41.88 2.23
2902 5045 3.552273 CGACCTACACACATACCCTATGC 60.552 52.174 0.00 0.00 39.79 3.14
2903 5046 2.704065 ACCTACACACATACCCTATGCC 59.296 50.000 0.00 0.00 39.79 4.40
2904 5047 2.038557 CCTACACACATACCCTATGCCC 59.961 54.545 0.00 0.00 39.79 5.36
2905 5048 0.843984 ACACACATACCCTATGCCCC 59.156 55.000 0.00 0.00 39.79 5.80
2906 5049 0.110486 CACACATACCCTATGCCCCC 59.890 60.000 0.00 0.00 39.79 5.40
2907 5050 0.029059 ACACATACCCTATGCCCCCT 60.029 55.000 0.00 0.00 39.79 4.79
2908 5051 0.693049 CACATACCCTATGCCCCCTC 59.307 60.000 0.00 0.00 39.79 4.30
2909 5052 0.475828 ACATACCCTATGCCCCCTCC 60.476 60.000 0.00 0.00 39.79 4.30
2910 5053 1.229529 ATACCCTATGCCCCCTCCG 60.230 63.158 0.00 0.00 0.00 4.63
2911 5054 2.765705 ATACCCTATGCCCCCTCCGG 62.766 65.000 0.00 0.00 0.00 5.14
2930 5073 2.626743 CGGAGGTAGTACCCTGTAATGG 59.373 54.545 16.05 0.00 39.75 3.16
2931 5074 3.689280 CGGAGGTAGTACCCTGTAATGGA 60.689 52.174 16.05 0.00 39.75 3.41
2937 5080 8.896722 AGGTAGTACCCTGTAATGGATATAAG 57.103 38.462 16.05 0.00 39.75 1.73
2938 5081 8.685311 AGGTAGTACCCTGTAATGGATATAAGA 58.315 37.037 16.05 0.00 39.75 2.10
2939 5082 9.490083 GGTAGTACCCTGTAATGGATATAAGAT 57.510 37.037 8.27 0.00 30.04 2.40
2987 5131 2.555227 GCCAGGGTCTCCAAATCTTCAA 60.555 50.000 0.00 0.00 34.83 2.69
2998 5142 6.662234 TCTCCAAATCTTCAATCTCAAAGCAT 59.338 34.615 0.00 0.00 0.00 3.79
3000 5144 8.529424 TCCAAATCTTCAATCTCAAAGCATAT 57.471 30.769 0.00 0.00 0.00 1.78
3027 5171 1.542767 CGATGAGATGGCTCCAGCAAT 60.543 52.381 6.95 0.00 44.36 3.56
3031 5175 0.841961 AGATGGCTCCAGCAATAGCA 59.158 50.000 6.95 0.00 45.49 3.49
3061 5205 6.813293 TGATCCTGAGAAAACATGGATAGA 57.187 37.500 0.00 0.00 37.62 1.98
3072 5216 3.034635 ACATGGATAGACCTCACACTCC 58.965 50.000 0.00 0.00 39.86 3.85
3076 5220 2.168728 GGATAGACCTCACACTCCCAAC 59.831 54.545 0.00 0.00 35.41 3.77
3077 5221 2.696526 TAGACCTCACACTCCCAACT 57.303 50.000 0.00 0.00 0.00 3.16
3078 5222 1.051812 AGACCTCACACTCCCAACTG 58.948 55.000 0.00 0.00 0.00 3.16
3079 5223 1.048601 GACCTCACACTCCCAACTGA 58.951 55.000 0.00 0.00 0.00 3.41
3081 5225 1.141053 ACCTCACACTCCCAACTGAAC 59.859 52.381 0.00 0.00 0.00 3.18
3082 5226 1.140852 CCTCACACTCCCAACTGAACA 59.859 52.381 0.00 0.00 0.00 3.18
3084 5228 3.480470 CTCACACTCCCAACTGAACATT 58.520 45.455 0.00 0.00 0.00 2.71
3085 5229 3.213506 TCACACTCCCAACTGAACATTG 58.786 45.455 0.00 0.00 0.00 2.82
3087 5231 2.951642 ACACTCCCAACTGAACATTGTG 59.048 45.455 0.00 0.00 0.00 3.33
3097 5241 4.925068 ACTGAACATTGTGCAAACTCTTC 58.075 39.130 0.00 0.00 0.00 2.87
3100 5244 3.360249 ACATTGTGCAAACTCTTCTGC 57.640 42.857 0.00 0.00 39.09 4.26
3108 5252 2.348591 GCAAACTCTTCTGCGTGTGTAC 60.349 50.000 0.00 0.00 0.00 2.90
3123 5267 1.918800 GTACCCTCCACAGCCCACT 60.919 63.158 0.00 0.00 0.00 4.00
3126 5270 2.528818 CCCTCCACAGCCCACTTCA 61.529 63.158 0.00 0.00 0.00 3.02
3155 5299 3.255149 ACCACGTTCTCTCGATAGTGTTT 59.745 43.478 0.00 0.00 37.40 2.83
3156 5300 4.235360 CCACGTTCTCTCGATAGTGTTTT 58.765 43.478 0.00 0.00 37.40 2.43
3157 5301 4.684703 CCACGTTCTCTCGATAGTGTTTTT 59.315 41.667 0.00 0.00 37.40 1.94
3190 5334 5.741011 TCGATAGTATCAAGGCAAACCTTT 58.259 37.500 10.71 0.00 46.47 3.11
3192 5336 6.351881 TCGATAGTATCAAGGCAAACCTTTCT 60.352 38.462 10.71 0.00 46.47 2.52
3231 5375 1.035139 ACAACTGACGGTCGTAGGTT 58.965 50.000 3.34 2.31 0.00 3.50
3253 5397 0.451783 CATTGCGTTAGCCAAGGGAC 59.548 55.000 0.00 0.00 44.33 4.46
3257 5401 2.818274 GTTAGCCAAGGGACGCGG 60.818 66.667 12.47 0.00 0.00 6.46
3277 5421 3.100671 GGCGAGATATCCAGGGTCTAAT 58.899 50.000 0.00 0.00 0.00 1.73
3299 5443 2.333938 CAGCAGTGCAACACCAGC 59.666 61.111 19.20 5.02 41.43 4.85
3300 5444 2.124193 AGCAGTGCAACACCAGCA 60.124 55.556 19.20 0.00 41.43 4.41
3301 5445 1.753848 AGCAGTGCAACACCAGCAA 60.754 52.632 19.20 0.00 44.64 3.91
3302 5446 1.111116 AGCAGTGCAACACCAGCAAT 61.111 50.000 19.20 0.00 44.64 3.56
3303 5447 0.665369 GCAGTGCAACACCAGCAATC 60.665 55.000 11.09 0.00 44.64 2.67
3413 5562 8.506168 TCACATATACCAGGTCTGAAATTTTC 57.494 34.615 0.00 2.05 0.00 2.29
3416 5565 9.125026 ACATATACCAGGTCTGAAATTTTCATC 57.875 33.333 12.04 8.59 39.30 2.92
3486 5750 3.136626 GCATATGAAACACCTACCCCTCT 59.863 47.826 6.97 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 0.034896 TTTCCTTCCGTGAGAGGCAC 59.965 55.000 0.00 0.00 44.21 5.01
140 141 3.371285 GCGAGAGACACTATTTTGGTTCC 59.629 47.826 0.00 0.00 0.00 3.62
141 142 3.994392 TGCGAGAGACACTATTTTGGTTC 59.006 43.478 0.00 0.00 0.00 3.62
142 143 3.997021 CTGCGAGAGACACTATTTTGGTT 59.003 43.478 0.00 0.00 0.00 3.67
143 144 3.258372 TCTGCGAGAGACACTATTTTGGT 59.742 43.478 0.00 0.00 0.00 3.67
144 145 3.849911 TCTGCGAGAGACACTATTTTGG 58.150 45.455 0.00 0.00 0.00 3.28
145 146 4.201666 GCTTCTGCGAGAGACACTATTTTG 60.202 45.833 0.00 0.00 0.00 2.44
146 147 3.929610 GCTTCTGCGAGAGACACTATTTT 59.070 43.478 0.00 0.00 0.00 1.82
147 148 3.056536 TGCTTCTGCGAGAGACACTATTT 60.057 43.478 0.00 0.00 43.34 1.40
148 149 2.493675 TGCTTCTGCGAGAGACACTATT 59.506 45.455 0.00 0.00 43.34 1.73
149 150 2.095461 TGCTTCTGCGAGAGACACTAT 58.905 47.619 0.00 0.00 43.34 2.12
150 151 1.534729 TGCTTCTGCGAGAGACACTA 58.465 50.000 0.00 0.00 43.34 2.74
151 152 0.676184 TTGCTTCTGCGAGAGACACT 59.324 50.000 0.00 0.00 43.34 3.55
152 153 1.502231 TTTGCTTCTGCGAGAGACAC 58.498 50.000 0.00 0.00 43.34 3.67
153 154 1.867233 GTTTTGCTTCTGCGAGAGACA 59.133 47.619 0.00 0.00 43.34 3.41
154 155 1.195674 GGTTTTGCTTCTGCGAGAGAC 59.804 52.381 0.00 0.00 43.34 3.36
155 156 1.512926 GGTTTTGCTTCTGCGAGAGA 58.487 50.000 0.00 0.00 43.34 3.10
156 157 0.164647 CGGTTTTGCTTCTGCGAGAG 59.835 55.000 0.00 0.00 43.34 3.20
157 158 0.531974 ACGGTTTTGCTTCTGCGAGA 60.532 50.000 0.00 0.00 43.34 4.04
158 159 0.384725 CACGGTTTTGCTTCTGCGAG 60.385 55.000 0.00 0.00 43.34 5.03
159 160 1.646540 CACGGTTTTGCTTCTGCGA 59.353 52.632 0.00 0.00 43.34 5.10
160 161 2.010817 GCACGGTTTTGCTTCTGCG 61.011 57.895 0.00 0.00 43.34 5.18
161 162 1.661509 GGCACGGTTTTGCTTCTGC 60.662 57.895 0.00 0.00 42.56 4.26
162 163 0.040067 GAGGCACGGTTTTGCTTCTG 60.040 55.000 1.28 0.00 43.46 3.02
163 164 2.331265 GAGGCACGGTTTTGCTTCT 58.669 52.632 1.28 0.00 43.46 2.85
218 222 3.091633 ACAGCCATGCCACTTAGAAAT 57.908 42.857 0.00 0.00 0.00 2.17
223 227 1.209504 GAGGTACAGCCATGCCACTTA 59.790 52.381 0.00 0.00 40.61 2.24
232 236 3.449227 CCGCGAGAGGTACAGCCA 61.449 66.667 8.23 0.00 40.61 4.75
236 240 1.529152 TTGCTTCCGCGAGAGGTACA 61.529 55.000 8.23 0.00 39.65 2.90
258 262 3.576078 TTCCTTCTGTGAGAGGCAAAA 57.424 42.857 0.00 0.00 0.00 2.44
259 263 3.576078 TTTCCTTCTGTGAGAGGCAAA 57.424 42.857 0.00 0.00 0.00 3.68
295 313 2.035442 GGCCGTGGCTCTCAGAAAC 61.035 63.158 11.25 0.00 41.60 2.78
349 367 3.502211 CGTGAGAGGTATGGTTTTGCTTT 59.498 43.478 0.00 0.00 0.00 3.51
400 422 1.003928 ACACCCATACCTTTCGGGAAC 59.996 52.381 0.00 0.00 43.21 3.62
403 425 1.029947 GCACACCCATACCTTTCGGG 61.030 60.000 0.00 0.00 46.22 5.14
414 436 4.641645 CCGCAAGAGGCACACCCA 62.642 66.667 0.00 0.00 45.17 4.51
417 439 2.743928 CTCCCGCAAGAGGCACAC 60.744 66.667 0.00 0.00 45.17 3.82
418 440 4.704833 GCTCCCGCAAGAGGCACA 62.705 66.667 2.44 0.00 45.17 4.57
448 470 7.548780 TCATGTTTTCTTTTTCCCTTTTGTGAG 59.451 33.333 0.00 0.00 0.00 3.51
464 486 6.742718 CGTGAAGCGAAAATATCATGTTTTCT 59.257 34.615 15.32 0.06 44.77 2.52
482 504 2.811317 CCGTGCCTCTCGTGAAGC 60.811 66.667 1.13 1.13 0.00 3.86
483 505 2.811317 GCCGTGCCTCTCGTGAAG 60.811 66.667 0.00 0.00 0.00 3.02
484 506 4.373116 GGCCGTGCCTCTCGTGAA 62.373 66.667 7.58 0.00 46.69 3.18
499 521 4.143333 TTCCGCTAGAGGCACGGC 62.143 66.667 7.80 0.00 46.49 5.68
536 558 2.268920 GGCCGTGCATCTCAGGAA 59.731 61.111 0.00 0.00 32.56 3.36
538 560 4.457496 ACGGCCGTGCATCTCAGG 62.457 66.667 33.75 0.00 0.00 3.86
539 561 3.190849 CACGGCCGTGCATCTCAG 61.191 66.667 42.21 19.27 39.39 3.35
575 600 1.358725 TTACTTCCGCGAGTGCATGC 61.359 55.000 11.82 11.82 42.97 4.06
581 606 2.818350 CGGTTTTACTTCCGCGAGT 58.182 52.632 8.23 6.70 40.28 4.18
641 666 9.905171 ATTTTCATCTGTCTTTCTTAGCTTTTC 57.095 29.630 0.00 0.00 0.00 2.29
704 744 3.948196 TTTTCTACACGTGTTTTCGGG 57.052 42.857 28.55 10.29 40.33 5.14
705 745 7.895582 TTTATTTTTCTACACGTGTTTTCGG 57.104 32.000 28.55 11.99 34.94 4.30
743 783 2.005451 CGCTCTGGACATTTTCTCTGG 58.995 52.381 0.00 0.00 0.00 3.86
745 785 2.300152 TCACGCTCTGGACATTTTCTCT 59.700 45.455 0.00 0.00 0.00 3.10
753 793 2.335011 CGTGTCACGCTCTGGACA 59.665 61.111 13.22 0.00 41.44 4.02
763 803 2.019951 AATCGCCGTCACGTGTCAC 61.020 57.895 16.51 6.37 0.00 3.67
779 819 1.502231 CCACTTAGCGCGCTATCAAT 58.498 50.000 38.51 22.03 0.00 2.57
780 820 1.151777 GCCACTTAGCGCGCTATCAA 61.152 55.000 38.51 25.89 0.00 2.57
792 832 0.815734 GGCTGAGAGTACGCCACTTA 59.184 55.000 4.07 0.00 43.25 2.24
798 838 2.184579 GGTGGGCTGAGAGTACGC 59.815 66.667 0.00 0.00 0.00 4.42
809 849 2.124695 GATCACTTCGGGGTGGGC 60.125 66.667 8.36 0.00 37.75 5.36
826 866 2.125512 CTTCGGAGCCTCCCAACG 60.126 66.667 4.85 0.00 31.13 4.10
838 878 0.721718 GTCAACGATTGCTCCTTCGG 59.278 55.000 0.00 0.00 39.61 4.30
840 880 3.851098 ACTAGTCAACGATTGCTCCTTC 58.149 45.455 0.00 0.00 0.00 3.46
844 884 3.375911 GCAACTAGTCAACGATTGCTC 57.624 47.619 0.00 0.00 41.88 4.26
848 888 4.521130 TGAGAGCAACTAGTCAACGATT 57.479 40.909 0.00 0.00 0.00 3.34
1184 1225 4.082523 CATGTCTCACCGGGGCGT 62.083 66.667 6.32 0.00 0.00 5.68
1188 1229 2.268920 CCACCATGTCTCACCGGG 59.731 66.667 6.32 0.00 0.00 5.73
1453 1494 2.415491 GGACATGACGATCGAAGTGACA 60.415 50.000 24.34 11.43 0.00 3.58
1632 1673 0.613012 AAGAGTGGGGCTTGGCAATC 60.613 55.000 0.00 0.00 0.00 2.67
1633 1674 0.613012 GAAGAGTGGGGCTTGGCAAT 60.613 55.000 0.00 0.00 0.00 3.56
1634 1675 1.228552 GAAGAGTGGGGCTTGGCAA 60.229 57.895 0.00 0.00 0.00 4.52
1635 1676 1.719063 AAGAAGAGTGGGGCTTGGCA 61.719 55.000 0.00 0.00 0.00 4.92
1636 1677 1.075659 AAGAAGAGTGGGGCTTGGC 59.924 57.895 0.00 0.00 0.00 4.52
1637 1678 1.246737 GCAAGAAGAGTGGGGCTTGG 61.247 60.000 0.00 0.00 38.46 3.61
1638 1679 0.251077 AGCAAGAAGAGTGGGGCTTG 60.251 55.000 0.00 0.00 40.40 4.01
1639 1680 0.480252 AAGCAAGAAGAGTGGGGCTT 59.520 50.000 0.00 0.00 36.82 4.35
1640 1681 0.251077 CAAGCAAGAAGAGTGGGGCT 60.251 55.000 0.00 0.00 0.00 5.19
1641 1682 1.871126 GCAAGCAAGAAGAGTGGGGC 61.871 60.000 0.00 0.00 0.00 5.80
1642 1683 1.580845 CGCAAGCAAGAAGAGTGGGG 61.581 60.000 0.00 0.00 0.00 4.96
1643 1684 0.603707 TCGCAAGCAAGAAGAGTGGG 60.604 55.000 0.00 0.00 37.18 4.61
1644 1685 1.129998 CATCGCAAGCAAGAAGAGTGG 59.870 52.381 0.00 0.00 37.18 4.00
1645 1686 1.465354 GCATCGCAAGCAAGAAGAGTG 60.465 52.381 0.00 0.00 37.18 3.51
1646 1687 0.801251 GCATCGCAAGCAAGAAGAGT 59.199 50.000 0.00 0.00 37.18 3.24
1647 1688 1.085091 AGCATCGCAAGCAAGAAGAG 58.915 50.000 0.00 0.00 37.18 2.85
1648 1689 1.466167 GAAGCATCGCAAGCAAGAAGA 59.534 47.619 0.00 0.00 37.18 2.87
1649 1690 1.467734 AGAAGCATCGCAAGCAAGAAG 59.532 47.619 0.00 0.00 37.18 2.85
1650 1691 1.527034 AGAAGCATCGCAAGCAAGAA 58.473 45.000 0.00 0.00 37.18 2.52
1660 1701 2.227388 AGGCTGAAAACAAGAAGCATCG 59.773 45.455 0.00 0.00 37.40 3.84
1661 1702 3.005155 ACAGGCTGAAAACAAGAAGCATC 59.995 43.478 23.66 0.00 37.40 3.91
1663 1704 2.099592 CACAGGCTGAAAACAAGAAGCA 59.900 45.455 23.66 0.00 37.40 3.91
1676 1717 0.803117 CTGAAGATGCACACAGGCTG 59.197 55.000 14.16 14.16 34.04 4.85
1677 1718 0.399454 ACTGAAGATGCACACAGGCT 59.601 50.000 13.16 0.00 35.08 4.58
1679 1720 3.201290 GGATACTGAAGATGCACACAGG 58.799 50.000 13.16 0.00 35.08 4.00
1680 1721 3.620374 GTGGATACTGAAGATGCACACAG 59.380 47.826 0.00 0.00 43.09 3.66
1681 1722 3.261643 AGTGGATACTGAAGATGCACACA 59.738 43.478 9.47 0.00 45.23 3.72
1683 1771 4.711846 AGTAGTGGATACTGAAGATGCACA 59.288 41.667 9.47 0.00 45.23 4.57
1686 1774 6.642707 AGTAGTAGTGGATACTGAAGATGC 57.357 41.667 0.00 0.00 44.69 3.91
1691 1779 6.829298 CAGAGGAAGTAGTAGTGGATACTGAA 59.171 42.308 0.00 0.00 44.69 3.02
1693 1781 5.533154 CCAGAGGAAGTAGTAGTGGATACTG 59.467 48.000 0.00 0.00 44.69 2.74
1699 1787 3.193691 CACACCAGAGGAAGTAGTAGTGG 59.806 52.174 0.00 0.00 0.00 4.00
1700 1788 3.193691 CCACACCAGAGGAAGTAGTAGTG 59.806 52.174 0.00 0.00 0.00 2.74
1702 1790 2.166664 GCCACACCAGAGGAAGTAGTAG 59.833 54.545 0.00 0.00 0.00 2.57
1703 1791 2.176889 GCCACACCAGAGGAAGTAGTA 58.823 52.381 0.00 0.00 0.00 1.82
1706 1794 0.685097 GTGCCACACCAGAGGAAGTA 59.315 55.000 0.00 0.00 0.00 2.24
1707 1795 1.056700 AGTGCCACACCAGAGGAAGT 61.057 55.000 0.00 0.00 34.49 3.01
1709 1797 1.656587 ATAGTGCCACACCAGAGGAA 58.343 50.000 0.00 0.00 34.49 3.36
1710 1798 1.656587 AATAGTGCCACACCAGAGGA 58.343 50.000 0.00 0.00 34.49 3.71
1711 1799 2.359900 GAAATAGTGCCACACCAGAGG 58.640 52.381 0.00 0.00 34.49 3.69
1712 1800 2.002586 CGAAATAGTGCCACACCAGAG 58.997 52.381 0.00 0.00 34.49 3.35
1713 1801 1.346395 ACGAAATAGTGCCACACCAGA 59.654 47.619 0.00 0.00 34.49 3.86
1714 1802 1.808411 ACGAAATAGTGCCACACCAG 58.192 50.000 0.00 0.00 34.49 4.00
1715 1803 2.300723 AGTACGAAATAGTGCCACACCA 59.699 45.455 0.00 0.00 34.49 4.17
1716 1804 2.968675 AGTACGAAATAGTGCCACACC 58.031 47.619 0.00 0.00 34.49 4.16
1717 1805 4.741342 ACTAGTACGAAATAGTGCCACAC 58.259 43.478 0.00 0.00 31.09 3.82
1718 1806 6.704289 ATACTAGTACGAAATAGTGCCACA 57.296 37.500 4.31 0.00 34.21 4.17
1719 1807 7.998753 AAATACTAGTACGAAATAGTGCCAC 57.001 36.000 4.31 0.00 34.21 5.01
1720 1808 8.906867 AGTAAATACTAGTACGAAATAGTGCCA 58.093 33.333 4.31 0.00 34.13 4.92
1721 1809 9.392021 GAGTAAATACTAGTACGAAATAGTGCC 57.608 37.037 4.31 0.00 36.50 5.01
1722 1810 9.941664 TGAGTAAATACTAGTACGAAATAGTGC 57.058 33.333 4.31 0.00 36.50 4.40
1730 1818 9.941664 GCTTTATGTGAGTAAATACTAGTACGA 57.058 33.333 4.31 0.00 36.50 3.43
1731 1819 9.178427 GGCTTTATGTGAGTAAATACTAGTACG 57.822 37.037 4.31 0.00 36.50 3.67
1732 1820 9.473640 GGGCTTTATGTGAGTAAATACTAGTAC 57.526 37.037 4.31 0.00 36.50 2.73
1733 1821 9.430399 AGGGCTTTATGTGAGTAAATACTAGTA 57.570 33.333 4.77 4.77 36.50 1.82
1734 1822 8.204836 CAGGGCTTTATGTGAGTAAATACTAGT 58.795 37.037 0.00 0.00 36.50 2.57
1735 1823 8.421784 TCAGGGCTTTATGTGAGTAAATACTAG 58.578 37.037 0.00 0.00 36.50 2.57
1736 1824 8.313944 TCAGGGCTTTATGTGAGTAAATACTA 57.686 34.615 0.00 0.00 36.50 1.82
1737 1825 7.195374 TCAGGGCTTTATGTGAGTAAATACT 57.805 36.000 0.00 0.00 39.71 2.12
1738 1826 7.859325 TTCAGGGCTTTATGTGAGTAAATAC 57.141 36.000 0.00 0.00 0.00 1.89
1739 1827 9.474313 AATTTCAGGGCTTTATGTGAGTAAATA 57.526 29.630 0.00 0.00 0.00 1.40
1740 1828 7.961326 ATTTCAGGGCTTTATGTGAGTAAAT 57.039 32.000 0.00 0.00 0.00 1.40
1741 1829 7.669722 AGAATTTCAGGGCTTTATGTGAGTAAA 59.330 33.333 0.00 0.00 0.00 2.01
1742 1830 7.175104 AGAATTTCAGGGCTTTATGTGAGTAA 58.825 34.615 0.00 0.00 0.00 2.24
1743 1831 6.721318 AGAATTTCAGGGCTTTATGTGAGTA 58.279 36.000 0.00 0.00 0.00 2.59
1744 1832 5.574188 AGAATTTCAGGGCTTTATGTGAGT 58.426 37.500 0.00 0.00 0.00 3.41
1745 1833 5.649395 TGAGAATTTCAGGGCTTTATGTGAG 59.351 40.000 0.00 0.00 0.00 3.51
1746 1834 5.569355 TGAGAATTTCAGGGCTTTATGTGA 58.431 37.500 0.00 0.00 0.00 3.58
1747 1835 5.902613 TGAGAATTTCAGGGCTTTATGTG 57.097 39.130 0.00 0.00 0.00 3.21
1748 1836 8.593945 TTTATGAGAATTTCAGGGCTTTATGT 57.406 30.769 0.00 0.00 39.68 2.29
1749 1837 9.874205 TTTTTATGAGAATTTCAGGGCTTTATG 57.126 29.630 0.00 0.00 39.68 1.90
1752 1840 7.761249 CGATTTTTATGAGAATTTCAGGGCTTT 59.239 33.333 0.00 0.00 39.68 3.51
1753 1841 7.260603 CGATTTTTATGAGAATTTCAGGGCTT 58.739 34.615 0.00 0.00 39.68 4.35
1754 1842 6.183360 CCGATTTTTATGAGAATTTCAGGGCT 60.183 38.462 0.00 0.00 39.68 5.19
1755 1843 5.979517 CCGATTTTTATGAGAATTTCAGGGC 59.020 40.000 0.00 0.00 39.68 5.19
1756 1844 5.979517 GCCGATTTTTATGAGAATTTCAGGG 59.020 40.000 0.00 0.00 39.68 4.45
1757 1845 6.563422 TGCCGATTTTTATGAGAATTTCAGG 58.437 36.000 0.00 0.00 39.68 3.86
1758 1846 6.197842 GCTGCCGATTTTTATGAGAATTTCAG 59.802 38.462 0.00 0.00 39.68 3.02
1759 1847 6.035843 GCTGCCGATTTTTATGAGAATTTCA 58.964 36.000 0.00 0.00 40.85 2.69
1760 1848 6.035843 TGCTGCCGATTTTTATGAGAATTTC 58.964 36.000 0.00 0.00 0.00 2.17
1761 1849 5.964758 TGCTGCCGATTTTTATGAGAATTT 58.035 33.333 0.00 0.00 0.00 1.82
1762 1850 5.581126 TGCTGCCGATTTTTATGAGAATT 57.419 34.783 0.00 0.00 0.00 2.17
1763 1851 5.300034 TGATGCTGCCGATTTTTATGAGAAT 59.700 36.000 0.00 0.00 0.00 2.40
1764 1852 4.639755 TGATGCTGCCGATTTTTATGAGAA 59.360 37.500 0.00 0.00 0.00 2.87
1765 1853 4.198530 TGATGCTGCCGATTTTTATGAGA 58.801 39.130 0.00 0.00 0.00 3.27
1766 1854 4.534168 CTGATGCTGCCGATTTTTATGAG 58.466 43.478 0.00 0.00 0.00 2.90
1767 1855 3.243168 GCTGATGCTGCCGATTTTTATGA 60.243 43.478 0.00 0.00 36.03 2.15
1768 1856 3.047796 GCTGATGCTGCCGATTTTTATG 58.952 45.455 0.00 0.00 36.03 1.90
1769 1857 3.360249 GCTGATGCTGCCGATTTTTAT 57.640 42.857 0.00 0.00 36.03 1.40
1770 1858 2.849880 GCTGATGCTGCCGATTTTTA 57.150 45.000 0.00 0.00 36.03 1.52
1771 1859 3.727419 GCTGATGCTGCCGATTTTT 57.273 47.368 0.00 0.00 36.03 1.94
1782 1870 1.527034 TTGTGAACCAGAGCTGATGC 58.473 50.000 0.00 0.00 40.05 3.91
1783 1871 4.763073 TCTATTGTGAACCAGAGCTGATG 58.237 43.478 0.00 0.00 0.00 3.07
1784 1872 5.181748 GTTCTATTGTGAACCAGAGCTGAT 58.818 41.667 0.00 0.00 40.10 2.90
1785 1873 4.569943 GTTCTATTGTGAACCAGAGCTGA 58.430 43.478 0.00 0.00 40.10 4.26
1786 1874 3.369147 CGTTCTATTGTGAACCAGAGCTG 59.631 47.826 0.00 0.00 42.22 4.24
1787 1875 3.589988 CGTTCTATTGTGAACCAGAGCT 58.410 45.455 0.00 0.00 42.22 4.09
1788 1876 2.673368 CCGTTCTATTGTGAACCAGAGC 59.327 50.000 0.00 0.00 42.22 4.09
1789 1877 3.926616 ACCGTTCTATTGTGAACCAGAG 58.073 45.455 0.00 0.00 42.22 3.35
1790 1878 4.525487 ACTACCGTTCTATTGTGAACCAGA 59.475 41.667 0.00 0.00 42.22 3.86
1791 1879 4.817517 ACTACCGTTCTATTGTGAACCAG 58.182 43.478 0.00 0.00 42.22 4.00
1792 1880 4.877378 ACTACCGTTCTATTGTGAACCA 57.123 40.909 0.00 0.00 42.22 3.67
1793 1881 5.126061 TCCTACTACCGTTCTATTGTGAACC 59.874 44.000 0.00 0.00 42.22 3.62
1794 1882 6.127786 ACTCCTACTACCGTTCTATTGTGAAC 60.128 42.308 0.00 0.00 41.91 3.18
1795 1883 5.948162 ACTCCTACTACCGTTCTATTGTGAA 59.052 40.000 0.00 0.00 0.00 3.18
1796 1884 5.503927 ACTCCTACTACCGTTCTATTGTGA 58.496 41.667 0.00 0.00 0.00 3.58
1797 1885 5.831702 ACTCCTACTACCGTTCTATTGTG 57.168 43.478 0.00 0.00 0.00 3.33
1798 1886 9.632638 TTATTACTCCTACTACCGTTCTATTGT 57.367 33.333 0.00 0.00 0.00 2.71
1800 1888 9.859152 ACTTATTACTCCTACTACCGTTCTATT 57.141 33.333 0.00 0.00 0.00 1.73
1803 1891 9.282569 CATACTTATTACTCCTACTACCGTTCT 57.717 37.037 0.00 0.00 0.00 3.01
1804 1892 8.020244 GCATACTTATTACTCCTACTACCGTTC 58.980 40.741 0.00 0.00 0.00 3.95
1805 1893 7.503566 TGCATACTTATTACTCCTACTACCGTT 59.496 37.037 0.00 0.00 0.00 4.44
1806 1894 7.000472 TGCATACTTATTACTCCTACTACCGT 59.000 38.462 0.00 0.00 0.00 4.83
1807 1895 7.174599 ACTGCATACTTATTACTCCTACTACCG 59.825 40.741 0.00 0.00 0.00 4.02
1808 1896 8.406730 ACTGCATACTTATTACTCCTACTACC 57.593 38.462 0.00 0.00 0.00 3.18
1811 1899 9.643735 ACTTACTGCATACTTATTACTCCTACT 57.356 33.333 0.00 0.00 0.00 2.57
1814 1902 9.643735 AGTACTTACTGCATACTTATTACTCCT 57.356 33.333 0.00 0.00 34.72 3.69
1821 1909 9.894783 CGTCATAAGTACTTACTGCATACTTAT 57.105 33.333 17.45 17.91 46.07 1.73
1822 1910 9.112725 TCGTCATAAGTACTTACTGCATACTTA 57.887 33.333 17.45 15.63 42.57 2.24
1823 1911 7.993101 TCGTCATAAGTACTTACTGCATACTT 58.007 34.615 17.45 12.84 41.07 2.24
1824 1912 7.563888 TCGTCATAAGTACTTACTGCATACT 57.436 36.000 17.45 0.00 36.50 2.12
1825 1913 8.798748 AATCGTCATAAGTACTTACTGCATAC 57.201 34.615 17.45 9.97 36.50 2.39
1826 1914 9.459640 GAAATCGTCATAAGTACTTACTGCATA 57.540 33.333 17.45 3.15 36.50 3.14
1827 1915 7.979537 TGAAATCGTCATAAGTACTTACTGCAT 59.020 33.333 17.45 0.00 36.50 3.96
1828 1916 7.317390 TGAAATCGTCATAAGTACTTACTGCA 58.683 34.615 17.45 0.00 36.50 4.41
1829 1917 7.515371 GCTGAAATCGTCATAAGTACTTACTGC 60.515 40.741 17.45 12.23 34.25 4.40
1830 1918 7.702772 AGCTGAAATCGTCATAAGTACTTACTG 59.297 37.037 17.45 15.42 34.25 2.74
1831 1919 7.702772 CAGCTGAAATCGTCATAAGTACTTACT 59.297 37.037 17.45 4.85 35.07 2.24
1832 1920 7.701078 TCAGCTGAAATCGTCATAAGTACTTAC 59.299 37.037 15.67 7.18 35.07 2.34
1833 1921 7.768240 TCAGCTGAAATCGTCATAAGTACTTA 58.232 34.615 15.67 17.41 35.07 2.24
1834 1922 6.631016 TCAGCTGAAATCGTCATAAGTACTT 58.369 36.000 15.67 13.68 35.07 2.24
1835 1923 6.208988 TCAGCTGAAATCGTCATAAGTACT 57.791 37.500 15.67 0.00 35.07 2.73
1836 1924 6.508721 GCTTCAGCTGAAATCGTCATAAGTAC 60.509 42.308 28.16 0.00 35.07 2.73
1837 1925 5.520288 GCTTCAGCTGAAATCGTCATAAGTA 59.480 40.000 28.16 2.78 35.07 2.24
1838 1926 4.331168 GCTTCAGCTGAAATCGTCATAAGT 59.669 41.667 28.16 0.00 35.07 2.24
1839 1927 4.830912 GCTTCAGCTGAAATCGTCATAAG 58.169 43.478 28.16 14.39 35.07 1.73
1840 1928 4.864916 GCTTCAGCTGAAATCGTCATAA 57.135 40.909 28.16 3.96 35.07 1.90
1854 1942 1.956477 TCAAGTTTTGGGAGCTTCAGC 59.044 47.619 0.00 0.00 42.49 4.26
1855 1943 2.031682 CGTCAAGTTTTGGGAGCTTCAG 60.032 50.000 0.00 0.00 0.00 3.02
1856 1944 1.946768 CGTCAAGTTTTGGGAGCTTCA 59.053 47.619 0.00 0.00 0.00 3.02
1857 1945 1.335051 GCGTCAAGTTTTGGGAGCTTC 60.335 52.381 0.00 0.00 0.00 3.86
1858 1946 0.668535 GCGTCAAGTTTTGGGAGCTT 59.331 50.000 0.00 0.00 0.00 3.74
1859 1947 0.465460 TGCGTCAAGTTTTGGGAGCT 60.465 50.000 0.00 0.00 0.00 4.09
1860 1948 0.383949 TTGCGTCAAGTTTTGGGAGC 59.616 50.000 0.00 0.00 0.00 4.70
1861 1949 2.861462 TTTGCGTCAAGTTTTGGGAG 57.139 45.000 0.00 0.00 0.00 4.30
1862 1950 2.737039 GCTTTTGCGTCAAGTTTTGGGA 60.737 45.455 0.00 0.00 34.86 4.37
1863 1951 1.592543 GCTTTTGCGTCAAGTTTTGGG 59.407 47.619 0.00 0.00 34.86 4.12
1864 1952 2.996691 GCTTTTGCGTCAAGTTTTGG 57.003 45.000 0.00 0.00 34.86 3.28
1876 1964 7.137426 CCTACTGAATATTGATCAGCTTTTGC 58.863 38.462 0.00 0.00 46.56 3.68
1877 1965 8.218338 ACCTACTGAATATTGATCAGCTTTTG 57.782 34.615 0.00 0.00 46.56 2.44
1878 1966 8.814038 AACCTACTGAATATTGATCAGCTTTT 57.186 30.769 0.00 0.00 46.56 2.27
1879 1967 9.905713 TTAACCTACTGAATATTGATCAGCTTT 57.094 29.630 0.00 0.00 46.56 3.51
1880 1968 9.553064 CTTAACCTACTGAATATTGATCAGCTT 57.447 33.333 0.00 0.00 46.56 3.74
1881 1969 7.659390 GCTTAACCTACTGAATATTGATCAGCT 59.341 37.037 0.00 0.00 46.56 4.24
1882 1970 7.659390 AGCTTAACCTACTGAATATTGATCAGC 59.341 37.037 0.00 0.00 46.56 4.26
1884 1972 7.933577 CCAGCTTAACCTACTGAATATTGATCA 59.066 37.037 0.00 0.00 33.10 2.92
1885 1973 7.934120 ACCAGCTTAACCTACTGAATATTGATC 59.066 37.037 0.00 0.00 33.10 2.92
1896 1984 3.105283 CCAGGTACCAGCTTAACCTACT 58.895 50.000 15.94 0.00 41.75 2.57
1905 1993 1.001633 CGTTGTTACCAGGTACCAGCT 59.998 52.381 15.94 0.00 0.00 4.24
1906 1994 1.270465 ACGTTGTTACCAGGTACCAGC 60.270 52.381 15.94 0.00 0.00 4.85
1907 1995 2.409975 CACGTTGTTACCAGGTACCAG 58.590 52.381 15.94 5.89 0.00 4.00
1908 1996 1.540797 GCACGTTGTTACCAGGTACCA 60.541 52.381 15.94 0.00 0.00 3.25
1909 1997 1.150827 GCACGTTGTTACCAGGTACC 58.849 55.000 2.73 2.73 0.00 3.34
1910 1998 1.796459 CAGCACGTTGTTACCAGGTAC 59.204 52.381 0.00 0.00 0.00 3.34
1911 1999 1.413445 ACAGCACGTTGTTACCAGGTA 59.587 47.619 0.00 0.00 0.00 3.08
1912 2000 0.179468 ACAGCACGTTGTTACCAGGT 59.821 50.000 0.00 0.00 0.00 4.00
1913 2001 0.865769 GACAGCACGTTGTTACCAGG 59.134 55.000 0.00 0.00 0.00 4.45
1928 2070 4.023279 TCGGAATGAACAACCAAATGACAG 60.023 41.667 0.00 0.00 0.00 3.51
1945 2087 7.730084 TCTGAATCTGATTACATCTTCGGAAT 58.270 34.615 2.28 0.00 33.19 3.01
1953 2095 7.714377 AGGTGAACATCTGAATCTGATTACATC 59.286 37.037 2.28 2.61 0.00 3.06
1954 2096 7.571919 AGGTGAACATCTGAATCTGATTACAT 58.428 34.615 2.28 0.00 0.00 2.29
1955 2097 6.950842 AGGTGAACATCTGAATCTGATTACA 58.049 36.000 2.28 3.13 0.00 2.41
1960 2102 5.488262 TGAAGGTGAACATCTGAATCTGA 57.512 39.130 0.00 0.00 0.00 3.27
1961 2103 6.564709 TTTGAAGGTGAACATCTGAATCTG 57.435 37.500 0.00 0.00 0.00 2.90
1962 2104 7.587037 TTTTTGAAGGTGAACATCTGAATCT 57.413 32.000 0.00 0.00 0.00 2.40
1963 2105 8.084073 TCATTTTTGAAGGTGAACATCTGAATC 58.916 33.333 0.00 0.00 0.00 2.52
1964 2106 7.954835 TCATTTTTGAAGGTGAACATCTGAAT 58.045 30.769 0.00 0.00 0.00 2.57
1965 2107 7.345422 TCATTTTTGAAGGTGAACATCTGAA 57.655 32.000 0.00 0.00 0.00 3.02
2004 2146 6.326375 TGCTAACGTGTTTTTCAGACAAATT 58.674 32.000 0.00 0.00 0.00 1.82
2005 2147 5.885881 TGCTAACGTGTTTTTCAGACAAAT 58.114 33.333 0.00 0.00 0.00 2.32
2006 2148 5.298197 TGCTAACGTGTTTTTCAGACAAA 57.702 34.783 0.00 0.00 0.00 2.83
2052 2194 9.804977 GGAGGGAGTACTTTCATAATAGTAGTA 57.195 37.037 0.00 0.00 32.18 1.82
2053 2195 7.447853 CGGAGGGAGTACTTTCATAATAGTAGT 59.552 40.741 0.00 0.00 34.15 2.73
2054 2196 7.447853 ACGGAGGGAGTACTTTCATAATAGTAG 59.552 40.741 0.00 0.00 0.00 2.57
2055 2197 7.293073 ACGGAGGGAGTACTTTCATAATAGTA 58.707 38.462 0.00 0.00 0.00 1.82
2056 2198 6.134754 ACGGAGGGAGTACTTTCATAATAGT 58.865 40.000 0.00 0.00 0.00 2.12
2057 2199 6.294620 GGACGGAGGGAGTACTTTCATAATAG 60.295 46.154 0.00 0.00 0.00 1.73
2058 2200 5.537674 GGACGGAGGGAGTACTTTCATAATA 59.462 44.000 0.00 0.00 0.00 0.98
2059 2201 4.344390 GGACGGAGGGAGTACTTTCATAAT 59.656 45.833 0.00 0.00 0.00 1.28
2060 2202 3.703052 GGACGGAGGGAGTACTTTCATAA 59.297 47.826 0.00 0.00 0.00 1.90
2061 2203 3.294214 GGACGGAGGGAGTACTTTCATA 58.706 50.000 0.00 0.00 0.00 2.15
2062 2204 2.108970 GGACGGAGGGAGTACTTTCAT 58.891 52.381 0.00 0.00 0.00 2.57
2063 2205 1.553706 GGACGGAGGGAGTACTTTCA 58.446 55.000 0.00 0.00 0.00 2.69
2064 2206 0.455005 CGGACGGAGGGAGTACTTTC 59.545 60.000 0.00 0.00 0.00 2.62
2065 2207 0.969409 CCGGACGGAGGGAGTACTTT 60.969 60.000 4.40 0.00 37.50 2.66
2066 2208 1.379576 CCGGACGGAGGGAGTACTT 60.380 63.158 4.40 0.00 37.50 2.24
2067 2209 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
2068 2210 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
2069 2211 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2070 2212 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2071 2213 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2072 2214 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2073 2215 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2074 2216 1.935933 CAAGTATTTCCGGACGGAGG 58.064 55.000 13.64 0.00 46.06 4.30
2075 2217 1.287425 GCAAGTATTTCCGGACGGAG 58.713 55.000 13.64 1.75 46.06 4.63
2076 2218 0.108041 GGCAAGTATTTCCGGACGGA 60.108 55.000 1.83 9.76 43.52 4.69
2077 2219 0.107848 AGGCAAGTATTTCCGGACGG 60.108 55.000 1.83 3.96 0.00 4.79
2078 2220 1.664151 GAAGGCAAGTATTTCCGGACG 59.336 52.381 1.83 0.00 0.00 4.79
2079 2221 1.664151 CGAAGGCAAGTATTTCCGGAC 59.336 52.381 1.83 0.00 0.00 4.79
2080 2222 1.551430 TCGAAGGCAAGTATTTCCGGA 59.449 47.619 0.00 0.00 0.00 5.14
2081 2223 2.018542 TCGAAGGCAAGTATTTCCGG 57.981 50.000 0.00 0.00 0.00 5.14
2082 2224 4.094294 TCATTTCGAAGGCAAGTATTTCCG 59.906 41.667 0.00 0.00 0.00 4.30
2083 2225 5.560966 TCATTTCGAAGGCAAGTATTTCC 57.439 39.130 0.00 0.00 0.00 3.13
2084 2226 7.029563 ACAATCATTTCGAAGGCAAGTATTTC 58.970 34.615 0.00 0.00 0.00 2.17
2085 2227 6.924111 ACAATCATTTCGAAGGCAAGTATTT 58.076 32.000 0.00 0.00 0.00 1.40
2086 2228 6.515272 ACAATCATTTCGAAGGCAAGTATT 57.485 33.333 0.00 0.00 0.00 1.89
2087 2229 7.716998 AGATACAATCATTTCGAAGGCAAGTAT 59.283 33.333 0.00 4.69 0.00 2.12
2088 2230 7.047891 AGATACAATCATTTCGAAGGCAAGTA 58.952 34.615 0.00 0.00 0.00 2.24
2089 2231 5.882557 AGATACAATCATTTCGAAGGCAAGT 59.117 36.000 0.00 0.00 0.00 3.16
2090 2232 6.369059 AGATACAATCATTTCGAAGGCAAG 57.631 37.500 0.00 0.00 0.00 4.01
2091 2233 7.224753 GTCTAGATACAATCATTTCGAAGGCAA 59.775 37.037 0.00 0.00 0.00 4.52
2092 2234 6.701841 GTCTAGATACAATCATTTCGAAGGCA 59.298 38.462 0.00 0.00 0.00 4.75
2093 2235 6.926272 AGTCTAGATACAATCATTTCGAAGGC 59.074 38.462 0.00 0.00 0.00 4.35
2094 2236 7.383572 CCAGTCTAGATACAATCATTTCGAAGG 59.616 40.741 0.00 0.00 0.00 3.46
2095 2237 7.383572 CCCAGTCTAGATACAATCATTTCGAAG 59.616 40.741 0.00 0.00 0.00 3.79
2096 2238 7.069455 TCCCAGTCTAGATACAATCATTTCGAA 59.931 37.037 0.00 0.00 0.00 3.71
2097 2239 6.549736 TCCCAGTCTAGATACAATCATTTCGA 59.450 38.462 0.00 0.00 0.00 3.71
2098 2240 6.749139 TCCCAGTCTAGATACAATCATTTCG 58.251 40.000 0.00 0.00 0.00 3.46
2099 2241 8.153550 ACATCCCAGTCTAGATACAATCATTTC 58.846 37.037 0.00 0.00 0.00 2.17
2100 2242 7.935755 CACATCCCAGTCTAGATACAATCATTT 59.064 37.037 0.00 0.00 0.00 2.32
2101 2243 7.448420 CACATCCCAGTCTAGATACAATCATT 58.552 38.462 0.00 0.00 0.00 2.57
2102 2244 6.013898 CCACATCCCAGTCTAGATACAATCAT 60.014 42.308 0.00 0.00 0.00 2.45
2103 2245 5.305386 CCACATCCCAGTCTAGATACAATCA 59.695 44.000 0.00 0.00 0.00 2.57
2104 2246 5.305644 ACCACATCCCAGTCTAGATACAATC 59.694 44.000 0.00 0.00 0.00 2.67
2105 2247 5.219739 ACCACATCCCAGTCTAGATACAAT 58.780 41.667 0.00 0.00 0.00 2.71
2106 2248 4.620723 ACCACATCCCAGTCTAGATACAA 58.379 43.478 0.00 0.00 0.00 2.41
2107 2249 4.265856 ACCACATCCCAGTCTAGATACA 57.734 45.455 0.00 0.00 0.00 2.29
2108 2250 4.767928 CCTACCACATCCCAGTCTAGATAC 59.232 50.000 0.00 0.00 0.00 2.24
2109 2251 4.753217 GCCTACCACATCCCAGTCTAGATA 60.753 50.000 0.00 0.00 0.00 1.98
2110 2252 3.850752 CCTACCACATCCCAGTCTAGAT 58.149 50.000 0.00 0.00 0.00 1.98
2111 2253 2.690026 GCCTACCACATCCCAGTCTAGA 60.690 54.545 0.00 0.00 0.00 2.43
2112 2254 1.689273 GCCTACCACATCCCAGTCTAG 59.311 57.143 0.00 0.00 0.00 2.43
2113 2255 1.007842 TGCCTACCACATCCCAGTCTA 59.992 52.381 0.00 0.00 0.00 2.59
2114 2256 0.252696 TGCCTACCACATCCCAGTCT 60.253 55.000 0.00 0.00 0.00 3.24
2115 2257 0.839946 ATGCCTACCACATCCCAGTC 59.160 55.000 0.00 0.00 0.00 3.51
2150 2292 4.510167 ACCCTTTCCTCATGTTCCTATG 57.490 45.455 0.00 0.00 0.00 2.23
2164 2306 3.055891 TGTTAACGCCCTACTACCCTTTC 60.056 47.826 0.26 0.00 0.00 2.62
2173 2315 2.156310 CGAAACTGTGTTAACGCCCTAC 59.844 50.000 16.23 1.53 0.00 3.18
2227 2372 4.526970 AGAGCTCTGGTTTCAGTTCAAAA 58.473 39.130 17.42 0.00 41.59 2.44
2252 2397 9.760660 GTCATCGATAATAAGCAAAATATGTCC 57.239 33.333 0.00 0.00 0.00 4.02
2281 2426 1.464687 GCTAGCTGTGCACATGTTTCG 60.465 52.381 22.00 8.67 0.00 3.46
2314 2459 9.695526 TGGATTGCTGCAAATAATATGTTAATC 57.304 29.630 20.06 7.15 0.00 1.75
2316 2461 9.695526 GATGGATTGCTGCAAATAATATGTTAA 57.304 29.630 20.06 0.00 0.00 2.01
2317 2462 9.081204 AGATGGATTGCTGCAAATAATATGTTA 57.919 29.630 20.06 0.00 0.00 2.41
2319 2464 7.231925 TCAGATGGATTGCTGCAAATAATATGT 59.768 33.333 20.06 0.00 32.27 2.29
2340 2485 2.889045 GCAATGGTATGCATGGTCAGAT 59.111 45.455 10.16 0.00 45.70 2.90
2406 2551 1.117150 CTAAGCAAGGCCCATGCATT 58.883 50.000 27.42 20.54 46.22 3.56
2509 2654 1.251251 GCCAAGCTTCACATGGTTCT 58.749 50.000 0.00 0.00 36.57 3.01
2525 2670 3.500343 TCACATAGCTAGCTAGATGCCA 58.500 45.455 27.42 11.58 44.23 4.92
2592 2743 2.109425 ATGCCAGGACGAACTTTACC 57.891 50.000 0.00 0.00 0.00 2.85
2631 3174 3.087031 AGCAAGATTTGGGTCATGACTG 58.913 45.455 24.50 13.44 0.00 3.51
2632 3175 3.446442 AGCAAGATTTGGGTCATGACT 57.554 42.857 24.50 4.96 0.00 3.41
2633 3176 3.507233 TGAAGCAAGATTTGGGTCATGAC 59.493 43.478 17.91 17.91 0.00 3.06
2634 3177 3.765381 TGAAGCAAGATTTGGGTCATGA 58.235 40.909 0.00 0.00 0.00 3.07
2635 3178 4.730949 ATGAAGCAAGATTTGGGTCATG 57.269 40.909 0.00 0.00 0.00 3.07
2636 3179 4.891756 CCTATGAAGCAAGATTTGGGTCAT 59.108 41.667 0.00 0.00 0.00 3.06
2660 3205 3.512516 GCATTCAGGGCAGGCGAC 61.513 66.667 0.00 0.00 0.00 5.19
2667 3212 4.725790 AATAAGTTTCTGCATTCAGGGC 57.274 40.909 0.00 0.00 40.69 5.19
2765 3527 3.119193 CATGTTACCCATGCGCCC 58.881 61.111 4.18 0.00 44.21 6.13
2774 3536 4.911514 ACTTTTGGTGTGACATGTTACC 57.088 40.909 17.24 16.85 0.00 2.85
2856 4867 8.590204 TCGGCAATCTGACTAACCAAATATATA 58.410 33.333 0.00 0.00 0.00 0.86
2857 4868 7.387948 GTCGGCAATCTGACTAACCAAATATAT 59.612 37.037 0.00 0.00 43.60 0.86
2858 4869 6.704493 GTCGGCAATCTGACTAACCAAATATA 59.296 38.462 0.00 0.00 43.60 0.86
2888 5031 0.029059 AGGGGGCATAGGGTATGTGT 60.029 55.000 0.00 0.00 38.43 3.72
2906 5049 0.258194 ACAGGGTACTACCTCCGGAG 59.742 60.000 25.36 25.36 39.34 4.63
2907 5050 1.595311 TACAGGGTACTACCTCCGGA 58.405 55.000 2.93 2.93 39.34 5.14
2908 5051 2.442236 TTACAGGGTACTACCTCCGG 57.558 55.000 5.19 0.00 39.34 5.14
2909 5052 2.626743 CCATTACAGGGTACTACCTCCG 59.373 54.545 5.19 0.00 39.34 4.63
2910 5053 3.919834 TCCATTACAGGGTACTACCTCC 58.080 50.000 5.19 0.00 39.34 4.30
2911 5054 8.890410 TTATATCCATTACAGGGTACTACCTC 57.110 38.462 5.19 0.00 39.34 3.85
2937 5080 6.849151 ACCCAAAACCATAGGGATACTTATC 58.151 40.000 0.00 0.00 45.80 1.75
2938 5081 6.858792 ACCCAAAACCATAGGGATACTTAT 57.141 37.500 0.00 0.00 45.80 1.73
2939 5082 7.957929 ATACCCAAAACCATAGGGATACTTA 57.042 36.000 0.00 0.00 45.80 2.24
2940 5083 6.858792 ATACCCAAAACCATAGGGATACTT 57.141 37.500 0.00 0.00 45.80 2.24
2942 5085 6.602009 GCATATACCCAAAACCATAGGGATAC 59.398 42.308 0.00 0.00 45.80 2.24
2943 5086 6.297360 GGCATATACCCAAAACCATAGGGATA 60.297 42.308 0.00 0.00 45.80 2.59
2987 5131 7.436933 TCATCGTGAAGTATATGCTTTGAGAT 58.563 34.615 7.53 9.35 0.00 2.75
2998 5142 4.218635 GGAGCCATCTCATCGTGAAGTATA 59.781 45.833 0.00 0.00 41.13 1.47
3000 5144 2.362397 GGAGCCATCTCATCGTGAAGTA 59.638 50.000 0.00 0.00 41.13 2.24
3027 5171 5.682234 TTCTCAGGATCAACATTCTGCTA 57.318 39.130 0.00 0.00 35.71 3.49
3031 5175 6.152323 CCATGTTTTCTCAGGATCAACATTCT 59.848 38.462 3.33 0.00 35.40 2.40
3061 5205 1.141053 GTTCAGTTGGGAGTGTGAGGT 59.859 52.381 0.00 0.00 0.00 3.85
3072 5216 3.784338 AGTTTGCACAATGTTCAGTTGG 58.216 40.909 0.00 0.00 0.00 3.77
3076 5220 4.974275 CAGAAGAGTTTGCACAATGTTCAG 59.026 41.667 11.94 1.22 0.00 3.02
3077 5221 4.734402 GCAGAAGAGTTTGCACAATGTTCA 60.734 41.667 11.94 0.00 40.02 3.18
3078 5222 3.732721 GCAGAAGAGTTTGCACAATGTTC 59.267 43.478 2.31 2.31 40.02 3.18
3079 5223 3.709987 GCAGAAGAGTTTGCACAATGTT 58.290 40.909 0.00 0.00 40.02 2.71
3081 5225 2.287188 ACGCAGAAGAGTTTGCACAATG 60.287 45.455 0.00 0.00 40.28 2.82
3082 5226 1.949525 ACGCAGAAGAGTTTGCACAAT 59.050 42.857 0.00 0.00 40.28 2.71
3084 5228 0.657312 CACGCAGAAGAGTTTGCACA 59.343 50.000 0.00 0.00 40.28 4.57
3085 5229 0.657840 ACACGCAGAAGAGTTTGCAC 59.342 50.000 0.00 0.00 40.28 4.57
3087 5231 0.657840 ACACACGCAGAAGAGTTTGC 59.342 50.000 0.00 0.00 36.97 3.68
3097 5241 1.374252 GTGGAGGGTACACACGCAG 60.374 63.158 0.00 0.00 39.99 5.18
3100 5244 1.374252 GCTGTGGAGGGTACACACG 60.374 63.158 0.00 0.00 43.35 4.49
3108 5252 2.067932 TTGAAGTGGGCTGTGGAGGG 62.068 60.000 0.00 0.00 0.00 4.30
3123 5267 1.601903 GAGAACGTGGTGCACATTGAA 59.398 47.619 20.43 0.00 33.40 2.69
3126 5270 1.512926 GAGAGAACGTGGTGCACATT 58.487 50.000 20.43 6.88 33.40 2.71
3162 5306 4.179926 TGCCTTGATACTATCGAGCATC 57.820 45.455 7.58 0.00 39.10 3.91
3163 5307 4.607293 TTGCCTTGATACTATCGAGCAT 57.393 40.909 7.58 0.00 39.10 3.79
3164 5308 4.119862 GTTTGCCTTGATACTATCGAGCA 58.880 43.478 7.58 5.81 39.10 4.26
3165 5309 3.495001 GGTTTGCCTTGATACTATCGAGC 59.505 47.826 7.58 3.65 39.10 5.03
3166 5310 4.950050 AGGTTTGCCTTGATACTATCGAG 58.050 43.478 6.38 6.38 44.18 4.04
3190 5334 1.788067 TTTGTCGTCGAGGCGTCAGA 61.788 55.000 7.26 2.27 32.42 3.27
3192 5336 0.528033 TTTTTGTCGTCGAGGCGTCA 60.528 50.000 7.26 0.00 0.00 4.35
3224 5368 2.769376 CTAACGCAATGCAAACCTACG 58.231 47.619 5.91 0.00 0.00 3.51
3226 5370 1.470890 GGCTAACGCAATGCAAACCTA 59.529 47.619 5.91 0.00 38.10 3.08
3231 5375 0.243365 CCTTGGCTAACGCAATGCAA 59.757 50.000 5.91 0.00 38.10 4.08
3253 5397 2.126307 CCTGGATATCTCGCCGCG 60.126 66.667 6.39 6.39 0.00 6.46
3257 5401 4.951094 AGTATTAGACCCTGGATATCTCGC 59.049 45.833 2.05 0.00 0.00 5.03
3299 5443 2.416547 GTGTCGATGGTGTTCTGGATTG 59.583 50.000 0.00 0.00 0.00 2.67
3300 5444 2.699954 GTGTCGATGGTGTTCTGGATT 58.300 47.619 0.00 0.00 0.00 3.01
3301 5445 1.404181 CGTGTCGATGGTGTTCTGGAT 60.404 52.381 0.00 0.00 0.00 3.41
3302 5446 0.038618 CGTGTCGATGGTGTTCTGGA 60.039 55.000 0.00 0.00 0.00 3.86
3303 5447 0.319555 ACGTGTCGATGGTGTTCTGG 60.320 55.000 0.00 0.00 0.00 3.86
3413 5562 7.720442 TCTGGTACTGAATTCTGATACAGATG 58.280 38.462 18.13 8.38 35.30 2.90
3416 5565 6.097554 ACCTCTGGTACTGAATTCTGATACAG 59.902 42.308 18.13 18.49 35.46 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.