Multiple sequence alignment - TraesCS5B01G196600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G196600 | chr5B | 100.000 | 4015 | 0 | 0 | 1 | 4015 | 354242512 | 354238498 | 0.000000e+00 | 7415.0 |
1 | TraesCS5B01G196600 | chr5D | 93.183 | 1599 | 70 | 11 | 1876 | 3470 | 309005667 | 309004104 | 0.000000e+00 | 2313.0 |
2 | TraesCS5B01G196600 | chr5D | 89.460 | 1518 | 79 | 36 | 356 | 1819 | 309007151 | 309005661 | 0.000000e+00 | 1842.0 |
3 | TraesCS5B01G196600 | chr5D | 93.375 | 317 | 9 | 3 | 1 | 317 | 309007459 | 309007155 | 3.660000e-125 | 459.0 |
4 | TraesCS5B01G196600 | chr5D | 84.282 | 439 | 65 | 4 | 3468 | 3905 | 309004052 | 309003617 | 3.710000e-115 | 425.0 |
5 | TraesCS5B01G196600 | chr5A | 90.447 | 1612 | 96 | 18 | 1876 | 3470 | 389071521 | 389073091 | 0.000000e+00 | 2071.0 |
6 | TraesCS5B01G196600 | chr5A | 89.377 | 1092 | 57 | 27 | 355 | 1414 | 389070073 | 389071137 | 0.000000e+00 | 1319.0 |
7 | TraesCS5B01G196600 | chr5A | 85.009 | 547 | 63 | 8 | 3470 | 4015 | 389073244 | 389073772 | 4.570000e-149 | 538.0 |
8 | TraesCS5B01G196600 | chr5A | 92.722 | 316 | 13 | 4 | 2 | 316 | 389069763 | 389070069 | 7.920000e-122 | 448.0 |
9 | TraesCS5B01G196600 | chr5A | 89.456 | 294 | 12 | 9 | 1544 | 1819 | 389071235 | 389071527 | 1.780000e-93 | 353.0 |
10 | TraesCS5B01G196600 | chr6B | 91.165 | 249 | 12 | 2 | 1166 | 1414 | 255097119 | 255096881 | 2.990000e-86 | 329.0 |
11 | TraesCS5B01G196600 | chr6B | 85.000 | 140 | 18 | 2 | 1037 | 1173 | 255097282 | 255097143 | 5.410000e-29 | 139.0 |
12 | TraesCS5B01G196600 | chr6B | 88.000 | 75 | 5 | 4 | 2568 | 2640 | 460209798 | 460209870 | 7.150000e-13 | 86.1 |
13 | TraesCS5B01G196600 | chr4A | 91.165 | 249 | 12 | 2 | 1166 | 1414 | 198002173 | 198001935 | 2.990000e-86 | 329.0 |
14 | TraesCS5B01G196600 | chr4A | 88.889 | 72 | 8 | 0 | 1036 | 1107 | 198002371 | 198002300 | 5.530000e-14 | 89.8 |
15 | TraesCS5B01G196600 | chr2D | 91.165 | 249 | 12 | 2 | 1166 | 1414 | 118801130 | 118800892 | 2.990000e-86 | 329.0 |
16 | TraesCS5B01G196600 | chr7B | 90.196 | 255 | 15 | 2 | 1160 | 1414 | 374717236 | 374717480 | 1.390000e-84 | 324.0 |
17 | TraesCS5B01G196600 | chr7B | 90.361 | 249 | 14 | 2 | 1166 | 1414 | 705711814 | 705711576 | 6.480000e-83 | 318.0 |
18 | TraesCS5B01G196600 | chr7B | 87.778 | 180 | 11 | 3 | 1160 | 1338 | 244641594 | 244641763 | 2.450000e-47 | 200.0 |
19 | TraesCS5B01G196600 | chr7B | 85.135 | 148 | 18 | 3 | 1036 | 1180 | 705711977 | 705711831 | 8.990000e-32 | 148.0 |
20 | TraesCS5B01G196600 | chr7B | 85.106 | 141 | 18 | 2 | 1036 | 1173 | 244641435 | 244641575 | 1.500000e-29 | 141.0 |
21 | TraesCS5B01G196600 | chr3B | 90.234 | 256 | 14 | 3 | 1160 | 1414 | 169825949 | 169826194 | 1.390000e-84 | 324.0 |
22 | TraesCS5B01G196600 | chr3B | 84.397 | 141 | 19 | 2 | 1036 | 1173 | 169825791 | 169825931 | 7.000000e-28 | 135.0 |
23 | TraesCS5B01G196600 | chr2B | 85.106 | 141 | 18 | 2 | 1036 | 1173 | 178772511 | 178772371 | 1.500000e-29 | 141.0 |
24 | TraesCS5B01G196600 | chr7A | 88.889 | 72 | 8 | 0 | 1036 | 1107 | 133316885 | 133316956 | 5.530000e-14 | 89.8 |
25 | TraesCS5B01G196600 | chr6D | 88.000 | 75 | 5 | 4 | 2568 | 2640 | 296824533 | 296824461 | 7.150000e-13 | 86.1 |
26 | TraesCS5B01G196600 | chr6A | 88.000 | 75 | 5 | 4 | 2568 | 2640 | 423533558 | 423533486 | 7.150000e-13 | 86.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G196600 | chr5B | 354238498 | 354242512 | 4014 | True | 7415.00 | 7415 | 100.0000 | 1 | 4015 | 1 | chr5B.!!$R1 | 4014 |
1 | TraesCS5B01G196600 | chr5D | 309003617 | 309007459 | 3842 | True | 1259.75 | 2313 | 90.0750 | 1 | 3905 | 4 | chr5D.!!$R1 | 3904 |
2 | TraesCS5B01G196600 | chr5A | 389069763 | 389073772 | 4009 | False | 945.80 | 2071 | 89.4022 | 2 | 4015 | 5 | chr5A.!!$F1 | 4013 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
326 | 332 | 0.037046 | TGATCACTGATGCACACGCT | 60.037 | 50.0 | 0.0 | 0.0 | 39.64 | 5.07 | F |
1092 | 1143 | 0.034059 | AGTGCAGTCCTCTGTTTCCG | 59.966 | 55.0 | 0.0 | 0.0 | 43.05 | 4.30 | F |
2459 | 2557 | 0.179108 | GCACCTTCGGCTACTTCGAT | 60.179 | 55.0 | 0.0 | 0.0 | 36.49 | 3.59 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1827 | 1920 | 1.340114 | GCTAGTCAAACTGGAAGGGGG | 60.340 | 57.143 | 0.00 | 0.0 | 39.3 | 5.40 | R |
2462 | 2560 | 0.179121 | CCATTACCAGCGCGTACTCA | 60.179 | 55.000 | 8.43 | 0.0 | 0.0 | 3.41 | R |
3916 | 4188 | 0.038166 | TTCCCCTGCACCAGTGATTC | 59.962 | 55.000 | 0.99 | 0.0 | 0.0 | 2.52 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
59 | 60 | 2.893398 | CCACCTCTACCACCGCTC | 59.107 | 66.667 | 0.00 | 0.00 | 0.00 | 5.03 |
60 | 61 | 2.490217 | CACCTCTACCACCGCTCG | 59.510 | 66.667 | 0.00 | 0.00 | 0.00 | 5.03 |
61 | 62 | 3.450115 | ACCTCTACCACCGCTCGC | 61.450 | 66.667 | 0.00 | 0.00 | 0.00 | 5.03 |
62 | 63 | 3.141488 | CCTCTACCACCGCTCGCT | 61.141 | 66.667 | 0.00 | 0.00 | 0.00 | 4.93 |
63 | 64 | 2.409651 | CTCTACCACCGCTCGCTC | 59.590 | 66.667 | 0.00 | 0.00 | 0.00 | 5.03 |
64 | 65 | 3.127352 | CTCTACCACCGCTCGCTCC | 62.127 | 68.421 | 0.00 | 0.00 | 0.00 | 4.70 |
65 | 66 | 3.141488 | CTACCACCGCTCGCTCCT | 61.141 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
105 | 106 | 0.811616 | CAGGCCCTTCCGATTCTTCG | 60.812 | 60.000 | 0.00 | 0.00 | 45.08 | 3.79 |
159 | 160 | 3.515602 | AGTTCTGCTCAACCATTTCCT | 57.484 | 42.857 | 0.00 | 0.00 | 0.00 | 3.36 |
241 | 243 | 0.321122 | CAACTGACACCCAGCTCTCC | 60.321 | 60.000 | 0.00 | 0.00 | 46.81 | 3.71 |
242 | 244 | 1.484444 | AACTGACACCCAGCTCTCCC | 61.484 | 60.000 | 0.00 | 0.00 | 46.81 | 4.30 |
243 | 245 | 1.611851 | CTGACACCCAGCTCTCCCT | 60.612 | 63.158 | 0.00 | 0.00 | 35.89 | 4.20 |
244 | 246 | 1.610673 | TGACACCCAGCTCTCCCTC | 60.611 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
245 | 247 | 2.284995 | ACACCCAGCTCTCCCTCC | 60.285 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
324 | 330 | 1.718396 | AGTGATCACTGATGCACACG | 58.282 | 50.000 | 27.37 | 0.00 | 40.75 | 4.49 |
325 | 331 | 0.095935 | GTGATCACTGATGCACACGC | 59.904 | 55.000 | 18.83 | 0.00 | 39.24 | 5.34 |
326 | 332 | 0.037046 | TGATCACTGATGCACACGCT | 60.037 | 50.000 | 0.00 | 0.00 | 39.64 | 5.07 |
327 | 333 | 0.372679 | GATCACTGATGCACACGCTG | 59.627 | 55.000 | 0.00 | 0.00 | 39.64 | 5.18 |
336 | 342 | 4.385093 | CACACGCTGCTGCTGCTG | 62.385 | 66.667 | 25.43 | 22.59 | 40.48 | 4.41 |
358 | 364 | 0.524414 | GCTGCTGCATCAACACATCA | 59.476 | 50.000 | 11.11 | 0.00 | 39.41 | 3.07 |
420 | 426 | 0.037326 | TCCTCCACACGCTTTGCTAG | 60.037 | 55.000 | 0.00 | 0.00 | 0.00 | 3.42 |
526 | 532 | 1.630126 | GCTCCCAAGAGATCAGCCCA | 61.630 | 60.000 | 0.00 | 0.00 | 43.39 | 5.36 |
528 | 534 | 1.072015 | CTCCCAAGAGATCAGCCCATC | 59.928 | 57.143 | 0.00 | 0.00 | 43.39 | 3.51 |
535 | 546 | 0.839853 | AGATCAGCCCATCCCCTAGC | 60.840 | 60.000 | 0.00 | 0.00 | 0.00 | 3.42 |
570 | 594 | 2.815211 | CGCCTGTACTGCACGCAT | 60.815 | 61.111 | 8.36 | 0.00 | 0.00 | 4.73 |
576 | 600 | 2.616960 | CTGTACTGCACGCATTCCTTA | 58.383 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
590 | 614 | 4.081420 | GCATTCCTTAGTCTTGTCCTCTCA | 60.081 | 45.833 | 0.00 | 0.00 | 0.00 | 3.27 |
591 | 615 | 5.415221 | CATTCCTTAGTCTTGTCCTCTCAC | 58.585 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
592 | 616 | 3.432378 | TCCTTAGTCTTGTCCTCTCACC | 58.568 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
593 | 617 | 2.498078 | CCTTAGTCTTGTCCTCTCACCC | 59.502 | 54.545 | 0.00 | 0.00 | 0.00 | 4.61 |
594 | 618 | 3.436243 | CTTAGTCTTGTCCTCTCACCCT | 58.564 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
595 | 619 | 2.407340 | AGTCTTGTCCTCTCACCCTT | 57.593 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
596 | 620 | 2.252714 | AGTCTTGTCCTCTCACCCTTC | 58.747 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
597 | 621 | 2.158234 | AGTCTTGTCCTCTCACCCTTCT | 60.158 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
598 | 622 | 2.028567 | GTCTTGTCCTCTCACCCTTCTG | 60.029 | 54.545 | 0.00 | 0.00 | 0.00 | 3.02 |
599 | 623 | 1.974236 | CTTGTCCTCTCACCCTTCTGT | 59.026 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
600 | 624 | 1.633774 | TGTCCTCTCACCCTTCTGTC | 58.366 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
601 | 625 | 0.899019 | GTCCTCTCACCCTTCTGTCC | 59.101 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
602 | 626 | 0.787084 | TCCTCTCACCCTTCTGTCCT | 59.213 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
603 | 627 | 1.190643 | CCTCTCACCCTTCTGTCCTC | 58.809 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
604 | 628 | 1.272985 | CCTCTCACCCTTCTGTCCTCT | 60.273 | 57.143 | 0.00 | 0.00 | 0.00 | 3.69 |
605 | 629 | 2.534990 | CTCTCACCCTTCTGTCCTCTT | 58.465 | 52.381 | 0.00 | 0.00 | 0.00 | 2.85 |
606 | 630 | 2.495669 | CTCTCACCCTTCTGTCCTCTTC | 59.504 | 54.545 | 0.00 | 0.00 | 0.00 | 2.87 |
607 | 631 | 2.158310 | TCTCACCCTTCTGTCCTCTTCA | 60.158 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
618 | 642 | 3.948473 | CTGTCCTCTTCATCTCTTCCGTA | 59.052 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
626 | 658 | 0.107508 | ATCTCTTCCGTACCGTCCGA | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 4.55 |
660 | 692 | 3.425713 | CACCGCGCAGTGCATTCT | 61.426 | 61.111 | 16.83 | 0.00 | 46.97 | 2.40 |
661 | 693 | 3.121030 | ACCGCGCAGTGCATTCTC | 61.121 | 61.111 | 16.83 | 0.00 | 46.97 | 2.87 |
664 | 696 | 2.863153 | GCGCAGTGCATTCTCGTT | 59.137 | 55.556 | 16.83 | 0.00 | 45.45 | 3.85 |
667 | 699 | 0.792640 | CGCAGTGCATTCTCGTTTCT | 59.207 | 50.000 | 16.83 | 0.00 | 0.00 | 2.52 |
669 | 701 | 1.800586 | GCAGTGCATTCTCGTTTCTCA | 59.199 | 47.619 | 11.09 | 0.00 | 0.00 | 3.27 |
670 | 702 | 2.159734 | GCAGTGCATTCTCGTTTCTCAG | 60.160 | 50.000 | 11.09 | 0.00 | 0.00 | 3.35 |
671 | 703 | 2.072298 | AGTGCATTCTCGTTTCTCAGC | 58.928 | 47.619 | 0.00 | 0.00 | 0.00 | 4.26 |
682 | 714 | 0.472471 | TTTCTCAGCCGGTTCAGGTT | 59.528 | 50.000 | 1.90 | 0.00 | 0.00 | 3.50 |
761 | 794 | 2.358957 | CGCTGGGATTGATTTGTCTGA | 58.641 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
771 | 805 | 3.743521 | TGATTTGTCTGACTGGTTCTGG | 58.256 | 45.455 | 9.51 | 0.00 | 0.00 | 3.86 |
1080 | 1126 | 2.880890 | GTTGAATCCTTGTGAGTGCAGT | 59.119 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
1092 | 1143 | 0.034059 | AGTGCAGTCCTCTGTTTCCG | 59.966 | 55.000 | 0.00 | 0.00 | 43.05 | 4.30 |
1095 | 1146 | 0.318762 | GCAGTCCTCTGTTTCCGTCT | 59.681 | 55.000 | 0.00 | 0.00 | 43.05 | 4.18 |
1100 | 1151 | 1.887198 | TCCTCTGTTTCCGTCTCACTC | 59.113 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
1121 | 1175 | 2.549754 | CTGTTGTCGGCAGAGTCATTTT | 59.450 | 45.455 | 0.00 | 0.00 | 36.12 | 1.82 |
1132 | 1186 | 5.091431 | GCAGAGTCATTTTTCACTGTATGC | 58.909 | 41.667 | 0.00 | 0.00 | 0.00 | 3.14 |
1134 | 1188 | 6.569226 | GCAGAGTCATTTTTCACTGTATGCTT | 60.569 | 38.462 | 0.00 | 0.00 | 0.00 | 3.91 |
1153 | 1209 | 4.821260 | TGCTTATCTGTTTCTTCAGTGCAA | 59.179 | 37.500 | 0.00 | 0.00 | 36.85 | 4.08 |
1154 | 1210 | 5.474532 | TGCTTATCTGTTTCTTCAGTGCAAT | 59.525 | 36.000 | 0.00 | 0.00 | 36.85 | 3.56 |
1163 | 1219 | 8.177119 | TGTTTCTTCAGTGCAATATTTAAGGT | 57.823 | 30.769 | 0.00 | 0.00 | 0.00 | 3.50 |
1218 | 1279 | 0.396435 | CTGCAGGGGTGTACAAGACA | 59.604 | 55.000 | 5.57 | 0.00 | 34.94 | 3.41 |
1244 | 1305 | 2.401699 | CTGTGGCAGGTGAAGGAGCA | 62.402 | 60.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1245 | 1306 | 1.228245 | GTGGCAGGTGAAGGAGCAA | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 3.91 |
1246 | 1307 | 1.073722 | TGGCAGGTGAAGGAGCAAG | 59.926 | 57.895 | 0.00 | 0.00 | 0.00 | 4.01 |
1247 | 1308 | 1.676967 | GGCAGGTGAAGGAGCAAGG | 60.677 | 63.158 | 0.00 | 0.00 | 0.00 | 3.61 |
1248 | 1309 | 2.338785 | GCAGGTGAAGGAGCAAGGC | 61.339 | 63.158 | 0.00 | 0.00 | 0.00 | 4.35 |
1249 | 1310 | 2.037136 | CAGGTGAAGGAGCAAGGCG | 61.037 | 63.158 | 0.00 | 0.00 | 0.00 | 5.52 |
1250 | 1311 | 3.435186 | GGTGAAGGAGCAAGGCGC | 61.435 | 66.667 | 0.00 | 0.00 | 42.91 | 6.53 |
1446 | 1507 | 4.795278 | CGAAATACGTACGGCTCTTACTTT | 59.205 | 41.667 | 21.06 | 6.75 | 37.22 | 2.66 |
1541 | 1602 | 4.949856 | GCAGGGTCTGAATATTTCCAAAGA | 59.050 | 41.667 | 0.00 | 0.00 | 32.44 | 2.52 |
1542 | 1603 | 5.595952 | GCAGGGTCTGAATATTTCCAAAGAT | 59.404 | 40.000 | 0.00 | 0.00 | 32.44 | 2.40 |
1581 | 1657 | 8.325282 | GTGGTGTTTTGTCATTTAGCTTTTTAC | 58.675 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
1582 | 1658 | 8.035394 | TGGTGTTTTGTCATTTAGCTTTTTACA | 58.965 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
1665 | 1741 | 5.183713 | CCTCTTTGGTTCTATGCATTTGTCA | 59.816 | 40.000 | 3.54 | 0.00 | 0.00 | 3.58 |
1666 | 1742 | 6.258230 | TCTTTGGTTCTATGCATTTGTCAG | 57.742 | 37.500 | 3.54 | 0.00 | 0.00 | 3.51 |
1667 | 1743 | 5.769662 | TCTTTGGTTCTATGCATTTGTCAGT | 59.230 | 36.000 | 3.54 | 0.00 | 0.00 | 3.41 |
1668 | 1744 | 6.939730 | TCTTTGGTTCTATGCATTTGTCAGTA | 59.060 | 34.615 | 3.54 | 0.00 | 0.00 | 2.74 |
1669 | 1745 | 6.741992 | TTGGTTCTATGCATTTGTCAGTAG | 57.258 | 37.500 | 3.54 | 0.00 | 0.00 | 2.57 |
1679 | 1772 | 4.148230 | GTCAGTAGGACACACGCG | 57.852 | 61.111 | 3.53 | 3.53 | 46.19 | 6.01 |
1745 | 1838 | 1.537202 | GAGTGGTGTGACATTTGCTCC | 59.463 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
1818 | 1911 | 9.603921 | GATCAAACACCAATAAATTCCAATGAT | 57.396 | 29.630 | 0.00 | 0.00 | 0.00 | 2.45 |
1819 | 1912 | 8.774890 | TCAAACACCAATAAATTCCAATGATG | 57.225 | 30.769 | 0.00 | 0.00 | 0.00 | 3.07 |
1820 | 1913 | 8.373981 | TCAAACACCAATAAATTCCAATGATGT | 58.626 | 29.630 | 0.00 | 0.00 | 0.00 | 3.06 |
1821 | 1914 | 9.001542 | CAAACACCAATAAATTCCAATGATGTT | 57.998 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
1822 | 1915 | 9.571816 | AAACACCAATAAATTCCAATGATGTTT | 57.428 | 25.926 | 0.00 | 0.00 | 0.00 | 2.83 |
1823 | 1916 | 9.571816 | AACACCAATAAATTCCAATGATGTTTT | 57.428 | 25.926 | 0.00 | 0.00 | 0.00 | 2.43 |
1831 | 1924 | 5.948742 | TTCCAATGATGTTTTATTCCCCC | 57.051 | 39.130 | 0.00 | 0.00 | 0.00 | 5.40 |
1832 | 1925 | 5.219468 | TCCAATGATGTTTTATTCCCCCT | 57.781 | 39.130 | 0.00 | 0.00 | 0.00 | 4.79 |
1833 | 1926 | 5.598754 | TCCAATGATGTTTTATTCCCCCTT | 58.401 | 37.500 | 0.00 | 0.00 | 0.00 | 3.95 |
1834 | 1927 | 5.660864 | TCCAATGATGTTTTATTCCCCCTTC | 59.339 | 40.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1835 | 1928 | 5.163311 | CCAATGATGTTTTATTCCCCCTTCC | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1836 | 1929 | 4.683766 | TGATGTTTTATTCCCCCTTCCA | 57.316 | 40.909 | 0.00 | 0.00 | 0.00 | 3.53 |
1837 | 1930 | 4.609301 | TGATGTTTTATTCCCCCTTCCAG | 58.391 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
1838 | 1931 | 4.045334 | TGATGTTTTATTCCCCCTTCCAGT | 59.955 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
1839 | 1932 | 4.479156 | TGTTTTATTCCCCCTTCCAGTT | 57.521 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
1840 | 1933 | 4.821940 | TGTTTTATTCCCCCTTCCAGTTT | 58.178 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
1841 | 1934 | 4.591072 | TGTTTTATTCCCCCTTCCAGTTTG | 59.409 | 41.667 | 0.00 | 0.00 | 0.00 | 2.93 |
1842 | 1935 | 4.750833 | TTTATTCCCCCTTCCAGTTTGA | 57.249 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
1843 | 1936 | 2.604912 | ATTCCCCCTTCCAGTTTGAC | 57.395 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1844 | 1937 | 1.529744 | TTCCCCCTTCCAGTTTGACT | 58.470 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1845 | 1938 | 2.426431 | TCCCCCTTCCAGTTTGACTA | 57.574 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1846 | 1939 | 2.266279 | TCCCCCTTCCAGTTTGACTAG | 58.734 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
1847 | 1940 | 1.340114 | CCCCCTTCCAGTTTGACTAGC | 60.340 | 57.143 | 0.00 | 0.00 | 0.00 | 3.42 |
1848 | 1941 | 1.351017 | CCCCTTCCAGTTTGACTAGCA | 59.649 | 52.381 | 0.00 | 0.00 | 0.00 | 3.49 |
1849 | 1942 | 2.025887 | CCCCTTCCAGTTTGACTAGCAT | 60.026 | 50.000 | 0.00 | 0.00 | 0.00 | 3.79 |
1850 | 1943 | 3.199946 | CCCCTTCCAGTTTGACTAGCATA | 59.800 | 47.826 | 0.00 | 0.00 | 0.00 | 3.14 |
1851 | 1944 | 4.446371 | CCCTTCCAGTTTGACTAGCATAG | 58.554 | 47.826 | 0.00 | 0.00 | 46.50 | 2.23 |
1852 | 1945 | 4.162320 | CCCTTCCAGTTTGACTAGCATAGA | 59.838 | 45.833 | 0.00 | 0.00 | 42.77 | 1.98 |
1853 | 1946 | 5.163258 | CCCTTCCAGTTTGACTAGCATAGAT | 60.163 | 44.000 | 0.00 | 0.00 | 42.77 | 1.98 |
1854 | 1947 | 6.042093 | CCCTTCCAGTTTGACTAGCATAGATA | 59.958 | 42.308 | 0.00 | 0.00 | 42.77 | 1.98 |
1855 | 1948 | 6.926272 | CCTTCCAGTTTGACTAGCATAGATAC | 59.074 | 42.308 | 0.00 | 0.00 | 42.77 | 2.24 |
1856 | 1949 | 7.417911 | CCTTCCAGTTTGACTAGCATAGATACA | 60.418 | 40.741 | 0.00 | 0.00 | 42.77 | 2.29 |
1857 | 1950 | 6.806751 | TCCAGTTTGACTAGCATAGATACAC | 58.193 | 40.000 | 0.00 | 0.00 | 42.77 | 2.90 |
1858 | 1951 | 5.986135 | CCAGTTTGACTAGCATAGATACACC | 59.014 | 44.000 | 0.00 | 0.00 | 42.77 | 4.16 |
1859 | 1952 | 6.406961 | CCAGTTTGACTAGCATAGATACACCA | 60.407 | 42.308 | 0.00 | 0.00 | 42.77 | 4.17 |
1860 | 1953 | 7.041721 | CAGTTTGACTAGCATAGATACACCAA | 58.958 | 38.462 | 0.00 | 0.00 | 42.77 | 3.67 |
1861 | 1954 | 7.712639 | CAGTTTGACTAGCATAGATACACCAAT | 59.287 | 37.037 | 0.00 | 0.00 | 42.77 | 3.16 |
1862 | 1955 | 8.924303 | AGTTTGACTAGCATAGATACACCAATA | 58.076 | 33.333 | 0.00 | 0.00 | 42.77 | 1.90 |
1863 | 1956 | 9.542462 | GTTTGACTAGCATAGATACACCAATAA | 57.458 | 33.333 | 0.00 | 0.00 | 42.77 | 1.40 |
1896 | 1989 | 8.768501 | TGATCAAGGAGTATGTCATTAGTAGT | 57.231 | 34.615 | 0.00 | 0.00 | 0.00 | 2.73 |
1913 | 2006 | 8.604035 | CATTAGTAGTACTGAATGCGATGTTTT | 58.396 | 33.333 | 13.29 | 0.00 | 0.00 | 2.43 |
1918 | 2011 | 7.016361 | AGTACTGAATGCGATGTTTTATTCC | 57.984 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1988 | 2086 | 5.680619 | TCAGTCCAACTAATGTCTTGTTGT | 58.319 | 37.500 | 0.00 | 0.00 | 39.30 | 3.32 |
2006 | 2104 | 6.653526 | TGTTGTTGTGAATGGATGAAGATT | 57.346 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
2333 | 2431 | 1.374252 | CCACCGGGACTTCAAGTCG | 60.374 | 63.158 | 11.52 | 1.49 | 45.96 | 4.18 |
2459 | 2557 | 0.179108 | GCACCTTCGGCTACTTCGAT | 60.179 | 55.000 | 0.00 | 0.00 | 36.49 | 3.59 |
2462 | 2560 | 1.033574 | CCTTCGGCTACTTCGATCCT | 58.966 | 55.000 | 0.00 | 0.00 | 36.49 | 3.24 |
2487 | 2585 | 3.202001 | CGCTGGTAATGGCCACGG | 61.202 | 66.667 | 8.16 | 0.34 | 34.36 | 4.94 |
2502 | 2600 | 3.508840 | CGGCCCTCGCACCATTTC | 61.509 | 66.667 | 0.00 | 0.00 | 36.38 | 2.17 |
2510 | 2608 | 1.741706 | CTCGCACCATTTCTGCAGAAT | 59.258 | 47.619 | 28.89 | 16.19 | 34.00 | 2.40 |
2511 | 2609 | 1.739466 | TCGCACCATTTCTGCAGAATC | 59.261 | 47.619 | 28.89 | 12.91 | 34.00 | 2.52 |
2531 | 2629 | 4.003788 | CCGTGCTGGTCGGGTTCT | 62.004 | 66.667 | 0.00 | 0.00 | 43.68 | 3.01 |
2535 | 2633 | 2.430367 | GCTGGTCGGGTTCTTGGT | 59.570 | 61.111 | 0.00 | 0.00 | 0.00 | 3.67 |
2548 | 2646 | 3.821033 | GGTTCTTGGTTGCACTAATGAGT | 59.179 | 43.478 | 0.00 | 0.00 | 35.80 | 3.41 |
2550 | 2648 | 5.472137 | GGTTCTTGGTTGCACTAATGAGTAA | 59.528 | 40.000 | 0.00 | 0.00 | 33.32 | 2.24 |
2552 | 2650 | 6.741992 | TCTTGGTTGCACTAATGAGTAATG | 57.258 | 37.500 | 0.00 | 0.00 | 33.32 | 1.90 |
2553 | 2651 | 6.472016 | TCTTGGTTGCACTAATGAGTAATGA | 58.528 | 36.000 | 0.00 | 0.00 | 33.32 | 2.57 |
2554 | 2652 | 6.595326 | TCTTGGTTGCACTAATGAGTAATGAG | 59.405 | 38.462 | 0.00 | 0.00 | 33.32 | 2.90 |
2555 | 2653 | 5.185454 | TGGTTGCACTAATGAGTAATGAGG | 58.815 | 41.667 | 0.00 | 0.00 | 33.32 | 3.86 |
2556 | 2654 | 5.045942 | TGGTTGCACTAATGAGTAATGAGGA | 60.046 | 40.000 | 0.00 | 0.00 | 33.32 | 3.71 |
2717 | 2815 | 2.242708 | GGTACTTCCTCTCTCCCTCTCA | 59.757 | 54.545 | 0.00 | 0.00 | 0.00 | 3.27 |
2870 | 2983 | 4.109675 | GTGGACCGGGACATGGGG | 62.110 | 72.222 | 6.32 | 0.00 | 0.00 | 4.96 |
2886 | 2999 | 2.278330 | GGGAAGGGGTCGTACACGT | 61.278 | 63.158 | 1.19 | 0.00 | 40.80 | 4.49 |
2912 | 3025 | 2.358247 | GTGTCCATGTTCGCGGGT | 60.358 | 61.111 | 6.13 | 0.00 | 0.00 | 5.28 |
3038 | 3151 | 3.811118 | TTTTGAGAACGGCCGCGGA | 62.811 | 57.895 | 33.48 | 0.69 | 0.00 | 5.54 |
3065 | 3178 | 3.318839 | TGCTTGGTTCAGTCTTGGAATTG | 59.681 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
3069 | 3182 | 6.294731 | GCTTGGTTCAGTCTTGGAATTGTTAT | 60.295 | 38.462 | 0.00 | 0.00 | 0.00 | 1.89 |
3086 | 3202 | 5.584253 | TGTTATTCGAGGAAGAGGAAGAG | 57.416 | 43.478 | 0.00 | 0.00 | 0.00 | 2.85 |
3139 | 3255 | 4.082245 | CCCCGTTCCATCCATATTAATTGC | 60.082 | 45.833 | 0.00 | 0.00 | 0.00 | 3.56 |
3189 | 3305 | 7.757097 | ATATCAGCGACAATTAATACGGATC | 57.243 | 36.000 | 10.14 | 0.00 | 0.00 | 3.36 |
3193 | 3309 | 5.045215 | AGCGACAATTAATACGGATCGAAA | 58.955 | 37.500 | 0.00 | 0.00 | 0.00 | 3.46 |
3194 | 3310 | 5.521010 | AGCGACAATTAATACGGATCGAAAA | 59.479 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3204 | 3320 | 7.752557 | AATACGGATCGAAAAGAGTAACTTC | 57.247 | 36.000 | 0.00 | 0.00 | 37.93 | 3.01 |
3207 | 3323 | 5.048224 | ACGGATCGAAAAGAGTAACTTCTCA | 60.048 | 40.000 | 0.00 | 0.00 | 37.93 | 3.27 |
3209 | 3325 | 6.197468 | CGGATCGAAAAGAGTAACTTCTCATC | 59.803 | 42.308 | 0.00 | 0.00 | 37.93 | 2.92 |
3215 | 3331 | 0.525668 | AGTAACTTCTCATCGCGCCG | 60.526 | 55.000 | 0.00 | 0.00 | 0.00 | 6.46 |
3216 | 3332 | 0.801067 | GTAACTTCTCATCGCGCCGT | 60.801 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
3270 | 3387 | 3.683802 | AGTCTTGAAATGAGAGGGCTTG | 58.316 | 45.455 | 0.00 | 0.00 | 0.00 | 4.01 |
3306 | 3425 | 5.180868 | CCAAGAAATGGTGTCTCAAGAAGAG | 59.819 | 44.000 | 0.00 | 0.00 | 44.85 | 2.85 |
3346 | 3465 | 0.614697 | TCGATGGAGGGAGCAAGTGA | 60.615 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3514 | 3786 | 5.324784 | TGTCTTAGTGCTATCGTTGTCAT | 57.675 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
3531 | 3803 | 4.894784 | TGTCATAGTCTGGACAAAGGTTC | 58.105 | 43.478 | 6.69 | 0.00 | 40.80 | 3.62 |
3586 | 3858 | 4.217767 | TCGACACAATAGCAAGTAGACACT | 59.782 | 41.667 | 0.00 | 0.00 | 36.19 | 3.55 |
3589 | 3861 | 5.611374 | ACACAATAGCAAGTAGACACTGTT | 58.389 | 37.500 | 0.00 | 0.00 | 34.36 | 3.16 |
3618 | 3890 | 2.096614 | AGGTAACAACGCAAATTCGTCG | 60.097 | 45.455 | 0.00 | 0.00 | 42.46 | 5.12 |
3627 | 3899 | 0.511221 | CAAATTCGTCGCGGTTGAGT | 59.489 | 50.000 | 6.13 | 0.00 | 0.00 | 3.41 |
3687 | 3959 | 6.560253 | AACTTGAAGCGTGTTCTAATCAAT | 57.440 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
3693 | 3965 | 9.541143 | TTGAAGCGTGTTCTAATCAATATATCA | 57.459 | 29.630 | 2.04 | 0.00 | 0.00 | 2.15 |
3755 | 4027 | 3.131400 | TGCCAAAACAGAAGGGTACAAAC | 59.869 | 43.478 | 0.00 | 0.00 | 0.00 | 2.93 |
3808 | 4080 | 1.076727 | GCCACTGGCTTTAGGGGTT | 59.923 | 57.895 | 13.28 | 0.00 | 46.69 | 4.11 |
3809 | 4081 | 0.965866 | GCCACTGGCTTTAGGGGTTC | 60.966 | 60.000 | 13.28 | 0.00 | 46.69 | 3.62 |
3810 | 4082 | 0.404040 | CCACTGGCTTTAGGGGTTCA | 59.596 | 55.000 | 0.00 | 0.00 | 36.46 | 3.18 |
3812 | 4084 | 2.557452 | CCACTGGCTTTAGGGGTTCATT | 60.557 | 50.000 | 0.00 | 0.00 | 36.46 | 2.57 |
3826 | 4098 | 3.369052 | GGGTTCATTCATGTCTCGGTGTA | 60.369 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
3827 | 4099 | 4.250464 | GGTTCATTCATGTCTCGGTGTAA | 58.750 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
3831 | 4103 | 5.547465 | TCATTCATGTCTCGGTGTAAAACT | 58.453 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
3870 | 4142 | 2.719376 | GGCACGGGTCATATTGCAT | 58.281 | 52.632 | 0.00 | 0.00 | 36.66 | 3.96 |
3897 | 4169 | 8.656849 | CATTCACCATATTATTAGAACCGCTAC | 58.343 | 37.037 | 0.00 | 0.00 | 0.00 | 3.58 |
3899 | 4171 | 7.728148 | TCACCATATTATTAGAACCGCTACAA | 58.272 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
3907 | 4179 | 3.444703 | AGAACCGCTACAATGCTAGAG | 57.555 | 47.619 | 0.00 | 0.00 | 0.00 | 2.43 |
3908 | 4180 | 1.861575 | GAACCGCTACAATGCTAGAGC | 59.138 | 52.381 | 0.00 | 0.00 | 42.50 | 4.09 |
3910 | 4182 | 0.390860 | CCGCTACAATGCTAGAGCCT | 59.609 | 55.000 | 0.00 | 0.00 | 41.18 | 4.58 |
3911 | 4183 | 1.495878 | CGCTACAATGCTAGAGCCTG | 58.504 | 55.000 | 0.00 | 0.00 | 41.18 | 4.85 |
3912 | 4184 | 1.224965 | GCTACAATGCTAGAGCCTGC | 58.775 | 55.000 | 0.00 | 0.00 | 41.18 | 4.85 |
3913 | 4185 | 1.495878 | CTACAATGCTAGAGCCTGCG | 58.504 | 55.000 | 0.00 | 0.00 | 41.18 | 5.18 |
3915 | 4187 | 1.890979 | CAATGCTAGAGCCTGCGGG | 60.891 | 63.158 | 7.41 | 7.41 | 41.18 | 6.13 |
3916 | 4188 | 3.112205 | AATGCTAGAGCCTGCGGGG | 62.112 | 63.158 | 15.02 | 1.86 | 41.18 | 5.73 |
3917 | 4189 | 4.777854 | TGCTAGAGCCTGCGGGGA | 62.778 | 66.667 | 15.02 | 0.00 | 41.18 | 4.81 |
3919 | 4191 | 2.812619 | GCTAGAGCCTGCGGGGAAT | 61.813 | 63.158 | 15.02 | 0.00 | 37.23 | 3.01 |
3921 | 4193 | 1.382557 | TAGAGCCTGCGGGGAATCA | 60.383 | 57.895 | 15.02 | 0.00 | 37.23 | 2.57 |
3922 | 4194 | 1.686325 | TAGAGCCTGCGGGGAATCAC | 61.686 | 60.000 | 15.02 | 0.00 | 37.23 | 3.06 |
3923 | 4195 | 3.011517 | AGCCTGCGGGGAATCACT | 61.012 | 61.111 | 15.02 | 0.00 | 37.23 | 3.41 |
3924 | 4196 | 2.825836 | GCCTGCGGGGAATCACTG | 60.826 | 66.667 | 15.02 | 0.00 | 37.23 | 3.66 |
3925 | 4197 | 2.124570 | CCTGCGGGGAATCACTGG | 60.125 | 66.667 | 2.57 | 0.00 | 37.23 | 4.00 |
3926 | 4198 | 2.671070 | CTGCGGGGAATCACTGGT | 59.329 | 61.111 | 0.00 | 0.00 | 0.00 | 4.00 |
3927 | 4199 | 1.746615 | CTGCGGGGAATCACTGGTG | 60.747 | 63.158 | 0.00 | 0.00 | 0.00 | 4.17 |
3928 | 4200 | 3.134127 | GCGGGGAATCACTGGTGC | 61.134 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
3929 | 4201 | 2.350895 | CGGGGAATCACTGGTGCA | 59.649 | 61.111 | 0.00 | 0.00 | 0.00 | 4.57 |
3930 | 4202 | 1.746615 | CGGGGAATCACTGGTGCAG | 60.747 | 63.158 | 0.00 | 0.00 | 37.52 | 4.41 |
3931 | 4203 | 1.379044 | GGGGAATCACTGGTGCAGG | 60.379 | 63.158 | 0.00 | 0.00 | 35.51 | 4.85 |
3932 | 4204 | 1.379044 | GGGAATCACTGGTGCAGGG | 60.379 | 63.158 | 0.00 | 0.00 | 36.00 | 4.45 |
3933 | 4205 | 1.379044 | GGAATCACTGGTGCAGGGG | 60.379 | 63.158 | 0.00 | 0.00 | 35.28 | 4.79 |
3934 | 4206 | 1.685224 | GAATCACTGGTGCAGGGGA | 59.315 | 57.895 | 0.00 | 0.00 | 35.28 | 4.81 |
3935 | 4207 | 0.038166 | GAATCACTGGTGCAGGGGAA | 59.962 | 55.000 | 0.00 | 0.00 | 35.28 | 3.97 |
3936 | 4208 | 0.706433 | AATCACTGGTGCAGGGGAAT | 59.294 | 50.000 | 0.00 | 0.00 | 35.28 | 3.01 |
3945 | 4217 | 2.048603 | GCAGGGGAATCACTGGTGC | 61.049 | 63.158 | 6.38 | 0.00 | 35.30 | 5.01 |
3966 | 4238 | 3.198068 | CACCCCTTACTCATCAATGTCG | 58.802 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
3969 | 4241 | 4.654262 | ACCCCTTACTCATCAATGTCGTAT | 59.346 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
3971 | 4243 | 5.453339 | CCCCTTACTCATCAATGTCGTATGT | 60.453 | 44.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3976 | 4248 | 4.330894 | ACTCATCAATGTCGTATGTTGCTG | 59.669 | 41.667 | 0.00 | 0.00 | 0.00 | 4.41 |
3994 | 4266 | 1.004918 | GCTAGCACCACGAACACCT | 60.005 | 57.895 | 10.63 | 0.00 | 0.00 | 4.00 |
3999 | 4271 | 1.414919 | AGCACCACGAACACCTTCTTA | 59.585 | 47.619 | 0.00 | 0.00 | 0.00 | 2.10 |
4005 | 4277 | 4.525487 | ACCACGAACACCTTCTTACTATGA | 59.475 | 41.667 | 0.00 | 0.00 | 0.00 | 2.15 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
18 | 19 | 1.296056 | GGTTGCGATGTAGCCGTTGT | 61.296 | 55.000 | 0.00 | 0.00 | 36.02 | 3.32 |
59 | 60 | 2.043450 | AGGGACTGAGGAGGAGCG | 60.043 | 66.667 | 0.00 | 0.00 | 37.18 | 5.03 |
105 | 106 | 0.463833 | GTGATTGGGACATCGGGGAC | 60.464 | 60.000 | 0.00 | 0.00 | 39.30 | 4.46 |
159 | 160 | 1.117994 | TGGTTGGTGCATTGCAAAGA | 58.882 | 45.000 | 13.94 | 0.00 | 41.47 | 2.52 |
241 | 243 | 3.798511 | GAAAGCCGGGGAGGGAGG | 61.799 | 72.222 | 2.18 | 0.00 | 41.48 | 4.30 |
242 | 244 | 4.162690 | CGAAAGCCGGGGAGGGAG | 62.163 | 72.222 | 2.18 | 0.00 | 41.48 | 4.30 |
339 | 345 | 0.524414 | TGATGTGTTGATGCAGCAGC | 59.476 | 50.000 | 12.24 | 12.24 | 42.57 | 5.25 |
340 | 346 | 2.223502 | GGATGATGTGTTGATGCAGCAG | 60.224 | 50.000 | 4.20 | 0.00 | 34.42 | 4.24 |
341 | 347 | 1.746787 | GGATGATGTGTTGATGCAGCA | 59.253 | 47.619 | 0.00 | 0.00 | 35.43 | 4.41 |
342 | 348 | 1.746787 | TGGATGATGTGTTGATGCAGC | 59.253 | 47.619 | 0.00 | 0.00 | 0.00 | 5.25 |
343 | 349 | 4.649088 | AATGGATGATGTGTTGATGCAG | 57.351 | 40.909 | 0.00 | 0.00 | 0.00 | 4.41 |
344 | 350 | 4.382147 | CCAAATGGATGATGTGTTGATGCA | 60.382 | 41.667 | 0.00 | 0.00 | 37.39 | 3.96 |
345 | 351 | 4.116961 | CCAAATGGATGATGTGTTGATGC | 58.883 | 43.478 | 0.00 | 0.00 | 37.39 | 3.91 |
346 | 352 | 5.585820 | TCCAAATGGATGATGTGTTGATG | 57.414 | 39.130 | 0.00 | 0.00 | 39.78 | 3.07 |
526 | 532 | 5.346782 | TCAGAGATAAGAAGCTAGGGGAT | 57.653 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
528 | 534 | 5.046663 | GGATTCAGAGATAAGAAGCTAGGGG | 60.047 | 48.000 | 0.00 | 0.00 | 31.29 | 4.79 |
535 | 546 | 3.323403 | AGGCGGGATTCAGAGATAAGAAG | 59.677 | 47.826 | 0.00 | 0.00 | 0.00 | 2.85 |
570 | 594 | 3.833070 | GGTGAGAGGACAAGACTAAGGAA | 59.167 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
576 | 600 | 2.158234 | AGAAGGGTGAGAGGACAAGACT | 60.158 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
590 | 614 | 3.103742 | GAGATGAAGAGGACAGAAGGGT | 58.896 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
591 | 615 | 3.373830 | AGAGATGAAGAGGACAGAAGGG | 58.626 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
592 | 616 | 4.141959 | GGAAGAGATGAAGAGGACAGAAGG | 60.142 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
593 | 617 | 4.439974 | CGGAAGAGATGAAGAGGACAGAAG | 60.440 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
594 | 618 | 3.445450 | CGGAAGAGATGAAGAGGACAGAA | 59.555 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
595 | 619 | 3.020274 | CGGAAGAGATGAAGAGGACAGA | 58.980 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
596 | 620 | 2.757868 | ACGGAAGAGATGAAGAGGACAG | 59.242 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
597 | 621 | 2.808919 | ACGGAAGAGATGAAGAGGACA | 58.191 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
598 | 622 | 3.067040 | GGTACGGAAGAGATGAAGAGGAC | 59.933 | 52.174 | 0.00 | 0.00 | 0.00 | 3.85 |
599 | 623 | 3.288964 | GGTACGGAAGAGATGAAGAGGA | 58.711 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
600 | 624 | 3.719173 | GGTACGGAAGAGATGAAGAGG | 57.281 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
618 | 642 | 3.745803 | GAGGCTTCGTCGGACGGT | 61.746 | 66.667 | 28.07 | 9.82 | 42.81 | 4.83 |
644 | 676 | 3.121030 | GAGAATGCACTGCGCGGT | 61.121 | 61.111 | 18.16 | 18.16 | 46.97 | 5.68 |
645 | 677 | 4.214383 | CGAGAATGCACTGCGCGG | 62.214 | 66.667 | 16.39 | 16.39 | 46.97 | 6.46 |
646 | 678 | 2.498761 | AAACGAGAATGCACTGCGCG | 62.499 | 55.000 | 0.00 | 0.00 | 46.97 | 6.86 |
647 | 679 | 0.790866 | GAAACGAGAATGCACTGCGC | 60.791 | 55.000 | 0.00 | 0.00 | 42.89 | 6.09 |
648 | 680 | 0.792640 | AGAAACGAGAATGCACTGCG | 59.207 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
649 | 681 | 1.800586 | TGAGAAACGAGAATGCACTGC | 59.199 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
650 | 682 | 2.159734 | GCTGAGAAACGAGAATGCACTG | 60.160 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
651 | 683 | 2.072298 | GCTGAGAAACGAGAATGCACT | 58.928 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
660 | 692 | 0.319555 | CTGAACCGGCTGAGAAACGA | 60.320 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
661 | 693 | 1.291877 | CCTGAACCGGCTGAGAAACG | 61.292 | 60.000 | 0.00 | 0.00 | 0.00 | 3.60 |
664 | 696 | 0.034896 | GAACCTGAACCGGCTGAGAA | 59.965 | 55.000 | 0.00 | 0.00 | 0.00 | 2.87 |
667 | 699 | 1.371183 | CTGAACCTGAACCGGCTGA | 59.629 | 57.895 | 0.00 | 0.00 | 0.00 | 4.26 |
669 | 701 | 2.032681 | GCTGAACCTGAACCGGCT | 59.967 | 61.111 | 0.00 | 0.00 | 0.00 | 5.52 |
670 | 702 | 3.056328 | GGCTGAACCTGAACCGGC | 61.056 | 66.667 | 0.00 | 0.00 | 34.51 | 6.13 |
682 | 714 | 1.352622 | AACACTGGGGACAAGGCTGA | 61.353 | 55.000 | 0.00 | 0.00 | 42.06 | 4.26 |
693 | 725 | 1.067516 | CAGGACAAGCAAAACACTGGG | 59.932 | 52.381 | 0.00 | 0.00 | 0.00 | 4.45 |
761 | 794 | 6.176183 | CAAGTATCAGAAATCCAGAACCAGT | 58.824 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1017 | 1063 | 2.240667 | CCTCCTCTTGTTCCATGTGGAT | 59.759 | 50.000 | 1.98 | 0.00 | 44.98 | 3.41 |
1080 | 1126 | 1.887198 | GAGTGAGACGGAAACAGAGGA | 59.113 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
1092 | 1143 | 0.032130 | TGCCGACAACAGAGTGAGAC | 59.968 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1095 | 1146 | 2.425562 | TCTGCCGACAACAGAGTGA | 58.574 | 52.632 | 0.00 | 0.00 | 39.21 | 3.41 |
1100 | 1151 | 1.800805 | AATGACTCTGCCGACAACAG | 58.199 | 50.000 | 0.00 | 0.00 | 36.44 | 3.16 |
1121 | 1175 | 7.877612 | TGAAGAAACAGATAAGCATACAGTGAA | 59.122 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
1153 | 1209 | 7.919385 | ATTCCTCATGGCAAACCTTAAATAT | 57.081 | 32.000 | 0.00 | 0.00 | 36.63 | 1.28 |
1154 | 1210 | 7.732222 | AATTCCTCATGGCAAACCTTAAATA | 57.268 | 32.000 | 0.00 | 0.00 | 36.63 | 1.40 |
1163 | 1219 | 5.659525 | AGATGATCAAATTCCTCATGGCAAA | 59.340 | 36.000 | 0.00 | 0.00 | 30.00 | 3.68 |
1283 | 1344 | 1.878775 | GTGAACACCATGGAGCAGC | 59.121 | 57.895 | 21.47 | 4.13 | 0.00 | 5.25 |
1446 | 1507 | 5.233083 | ACAACACCATCTTCTGAATCTGA | 57.767 | 39.130 | 0.00 | 0.00 | 0.00 | 3.27 |
1541 | 1602 | 7.330262 | ACAAAACACCACAATCTTCTGAAAAT | 58.670 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
1542 | 1603 | 6.696411 | ACAAAACACCACAATCTTCTGAAAA | 58.304 | 32.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1606 | 1682 | 5.105228 | CCCAACAGAATCATTGGTGCTAAAT | 60.105 | 40.000 | 13.15 | 0.00 | 43.36 | 1.40 |
1607 | 1683 | 4.220382 | CCCAACAGAATCATTGGTGCTAAA | 59.780 | 41.667 | 13.15 | 0.00 | 43.36 | 1.85 |
1665 | 1741 | 2.989824 | AGGCGCGTGTGTCCTACT | 60.990 | 61.111 | 8.43 | 0.00 | 0.00 | 2.57 |
1666 | 1742 | 2.809601 | CAGGCGCGTGTGTCCTAC | 60.810 | 66.667 | 21.45 | 0.00 | 0.00 | 3.18 |
1667 | 1743 | 2.986979 | TCAGGCGCGTGTGTCCTA | 60.987 | 61.111 | 27.39 | 6.40 | 0.00 | 2.94 |
1668 | 1744 | 4.664677 | GTCAGGCGCGTGTGTCCT | 62.665 | 66.667 | 27.39 | 1.30 | 0.00 | 3.85 |
1677 | 1770 | 3.414700 | CACGTTCAGGTCAGGCGC | 61.415 | 66.667 | 0.00 | 0.00 | 0.00 | 6.53 |
1679 | 1772 | 2.380084 | TTATCACGTTCAGGTCAGGC | 57.620 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1718 | 1811 | 3.606595 | ATGTCACACCACTCTGATCTG | 57.393 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
1745 | 1838 | 3.675228 | GCTTTTCTTGACATGGATGCCAG | 60.675 | 47.826 | 0.00 | 0.00 | 36.75 | 4.85 |
1818 | 1911 | 4.479156 | AACTGGAAGGGGGAATAAAACA | 57.521 | 40.909 | 0.00 | 0.00 | 39.30 | 2.83 |
1819 | 1912 | 4.836175 | TCAAACTGGAAGGGGGAATAAAAC | 59.164 | 41.667 | 0.00 | 0.00 | 39.30 | 2.43 |
1820 | 1913 | 4.836175 | GTCAAACTGGAAGGGGGAATAAAA | 59.164 | 41.667 | 0.00 | 0.00 | 39.30 | 1.52 |
1821 | 1914 | 4.107311 | AGTCAAACTGGAAGGGGGAATAAA | 59.893 | 41.667 | 0.00 | 0.00 | 39.30 | 1.40 |
1822 | 1915 | 3.660669 | AGTCAAACTGGAAGGGGGAATAA | 59.339 | 43.478 | 0.00 | 0.00 | 39.30 | 1.40 |
1823 | 1916 | 3.265489 | AGTCAAACTGGAAGGGGGAATA | 58.735 | 45.455 | 0.00 | 0.00 | 39.30 | 1.75 |
1824 | 1917 | 2.073776 | AGTCAAACTGGAAGGGGGAAT | 58.926 | 47.619 | 0.00 | 0.00 | 39.30 | 3.01 |
1825 | 1918 | 1.529744 | AGTCAAACTGGAAGGGGGAA | 58.470 | 50.000 | 0.00 | 0.00 | 39.30 | 3.97 |
1826 | 1919 | 2.266279 | CTAGTCAAACTGGAAGGGGGA | 58.734 | 52.381 | 0.00 | 0.00 | 39.30 | 4.81 |
1827 | 1920 | 1.340114 | GCTAGTCAAACTGGAAGGGGG | 60.340 | 57.143 | 0.00 | 0.00 | 39.30 | 5.40 |
1828 | 1921 | 1.351017 | TGCTAGTCAAACTGGAAGGGG | 59.649 | 52.381 | 0.00 | 0.00 | 39.30 | 4.79 |
1829 | 1922 | 2.859165 | TGCTAGTCAAACTGGAAGGG | 57.141 | 50.000 | 0.00 | 0.00 | 39.30 | 3.95 |
1830 | 1923 | 5.344743 | TCTATGCTAGTCAAACTGGAAGG | 57.655 | 43.478 | 0.00 | 0.00 | 39.30 | 3.46 |
1831 | 1924 | 7.436673 | GTGTATCTATGCTAGTCAAACTGGAAG | 59.563 | 40.741 | 0.00 | 0.00 | 42.29 | 3.46 |
1832 | 1925 | 7.265673 | GTGTATCTATGCTAGTCAAACTGGAA | 58.734 | 38.462 | 0.00 | 0.00 | 0.00 | 3.53 |
1833 | 1926 | 6.183360 | GGTGTATCTATGCTAGTCAAACTGGA | 60.183 | 42.308 | 0.00 | 0.00 | 0.00 | 3.86 |
1834 | 1927 | 5.986135 | GGTGTATCTATGCTAGTCAAACTGG | 59.014 | 44.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1835 | 1928 | 6.573434 | TGGTGTATCTATGCTAGTCAAACTG | 58.427 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1836 | 1929 | 6.791867 | TGGTGTATCTATGCTAGTCAAACT | 57.208 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
1837 | 1930 | 9.542462 | TTATTGGTGTATCTATGCTAGTCAAAC | 57.458 | 33.333 | 0.00 | 0.00 | 0.00 | 2.93 |
1868 | 1961 | 8.954950 | ACTAATGACATACTCCTTGATCAAAG | 57.045 | 34.615 | 9.88 | 7.57 | 35.47 | 2.77 |
1870 | 1963 | 9.201989 | ACTACTAATGACATACTCCTTGATCAA | 57.798 | 33.333 | 8.12 | 8.12 | 0.00 | 2.57 |
1871 | 1964 | 8.768501 | ACTACTAATGACATACTCCTTGATCA | 57.231 | 34.615 | 0.00 | 0.00 | 0.00 | 2.92 |
1873 | 1966 | 9.869667 | AGTACTACTAATGACATACTCCTTGAT | 57.130 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1874 | 1967 | 9.121658 | CAGTACTACTAATGACATACTCCTTGA | 57.878 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
1875 | 1968 | 9.121658 | TCAGTACTACTAATGACATACTCCTTG | 57.878 | 37.037 | 0.00 | 0.00 | 0.00 | 3.61 |
1876 | 1969 | 9.696572 | TTCAGTACTACTAATGACATACTCCTT | 57.303 | 33.333 | 0.00 | 0.00 | 26.69 | 3.36 |
1877 | 1970 | 9.869667 | ATTCAGTACTACTAATGACATACTCCT | 57.130 | 33.333 | 0.00 | 0.00 | 26.69 | 3.69 |
1878 | 1971 | 9.900710 | CATTCAGTACTACTAATGACATACTCC | 57.099 | 37.037 | 14.95 | 0.00 | 32.29 | 3.85 |
1879 | 1972 | 9.400638 | GCATTCAGTACTACTAATGACATACTC | 57.599 | 37.037 | 20.62 | 5.43 | 32.29 | 2.59 |
1880 | 1973 | 8.076781 | CGCATTCAGTACTACTAATGACATACT | 58.923 | 37.037 | 20.62 | 0.00 | 32.29 | 2.12 |
1881 | 1974 | 8.074370 | TCGCATTCAGTACTACTAATGACATAC | 58.926 | 37.037 | 20.62 | 8.16 | 32.29 | 2.39 |
1896 | 1989 | 5.298276 | GGGGAATAAAACATCGCATTCAGTA | 59.702 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1913 | 2006 | 5.602291 | TTTACAAACTGGAAGGGGGAATA | 57.398 | 39.130 | 0.00 | 0.00 | 39.30 | 1.75 |
1918 | 2011 | 4.407365 | ACAGATTTACAAACTGGAAGGGG | 58.593 | 43.478 | 0.00 | 0.00 | 39.30 | 4.79 |
1988 | 2086 | 4.082081 | GCCACAATCTTCATCCATTCACAA | 60.082 | 41.667 | 0.00 | 0.00 | 0.00 | 3.33 |
2333 | 2431 | 3.657956 | CGAGAGGAGGATGTTGCTC | 57.342 | 57.895 | 0.00 | 0.00 | 35.95 | 4.26 |
2459 | 2557 | 0.961857 | TTACCAGCGCGTACTCAGGA | 60.962 | 55.000 | 8.43 | 0.00 | 0.00 | 3.86 |
2462 | 2560 | 0.179121 | CCATTACCAGCGCGTACTCA | 60.179 | 55.000 | 8.43 | 0.00 | 0.00 | 3.41 |
2487 | 2585 | 3.056313 | GCAGAAATGGTGCGAGGGC | 62.056 | 63.158 | 0.00 | 0.00 | 40.52 | 5.19 |
2492 | 2590 | 1.202222 | GGATTCTGCAGAAATGGTGCG | 60.202 | 52.381 | 31.55 | 0.00 | 44.35 | 5.34 |
2502 | 2600 | 3.869272 | GCACGGCGGATTCTGCAG | 61.869 | 66.667 | 18.80 | 16.84 | 0.00 | 4.41 |
2531 | 2629 | 5.647658 | CCTCATTACTCATTAGTGCAACCAA | 59.352 | 40.000 | 0.00 | 0.00 | 37.80 | 3.67 |
2535 | 2633 | 6.767902 | GGAATCCTCATTACTCATTAGTGCAA | 59.232 | 38.462 | 0.00 | 0.00 | 36.36 | 4.08 |
2555 | 2653 | 1.530293 | GTCTGCATGCGAGATGGAATC | 59.470 | 52.381 | 14.09 | 1.10 | 46.04 | 2.52 |
2556 | 2654 | 1.590932 | GTCTGCATGCGAGATGGAAT | 58.409 | 50.000 | 14.09 | 0.00 | 0.00 | 3.01 |
2702 | 2800 | 1.618030 | GGCTGAGAGGGAGAGAGGA | 59.382 | 63.158 | 0.00 | 0.00 | 0.00 | 3.71 |
2703 | 2801 | 1.827789 | CGGCTGAGAGGGAGAGAGG | 60.828 | 68.421 | 0.00 | 0.00 | 0.00 | 3.69 |
2704 | 2802 | 1.827789 | CCGGCTGAGAGGGAGAGAG | 60.828 | 68.421 | 0.00 | 0.00 | 0.00 | 3.20 |
2705 | 2803 | 2.277072 | CCGGCTGAGAGGGAGAGA | 59.723 | 66.667 | 0.00 | 0.00 | 0.00 | 3.10 |
2706 | 2804 | 3.535962 | GCCGGCTGAGAGGGAGAG | 61.536 | 72.222 | 22.15 | 0.00 | 0.00 | 3.20 |
2707 | 2805 | 4.067512 | AGCCGGCTGAGAGGGAGA | 62.068 | 66.667 | 32.33 | 0.00 | 0.00 | 3.71 |
2708 | 2806 | 3.847602 | CAGCCGGCTGAGAGGGAG | 61.848 | 72.222 | 46.72 | 21.06 | 46.30 | 4.30 |
2762 | 2875 | 3.386237 | GCCGAGGGTCAGCAGAGT | 61.386 | 66.667 | 0.00 | 0.00 | 0.00 | 3.24 |
2764 | 2877 | 3.385384 | CAGCCGAGGGTCAGCAGA | 61.385 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
2870 | 2983 | 0.668401 | CCAACGTGTACGACCCCTTC | 60.668 | 60.000 | 11.79 | 0.00 | 43.02 | 3.46 |
2886 | 2999 | 0.762418 | AACATGGACACCGACTCCAA | 59.238 | 50.000 | 0.00 | 0.00 | 41.27 | 3.53 |
3038 | 3151 | 3.571401 | CCAAGACTGAACCAAGCAAAGAT | 59.429 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
3065 | 3178 | 4.645588 | TCCTCTTCCTCTTCCTCGAATAAC | 59.354 | 45.833 | 0.00 | 0.00 | 0.00 | 1.89 |
3069 | 3182 | 2.901338 | TCCTCTTCCTCTTCCTCGAA | 57.099 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
3086 | 3202 | 2.695359 | TCTGTACAAGTTTCGCCATCC | 58.305 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
3139 | 3255 | 7.649973 | AGTATAAAGTTGTACTAGATCAGCCG | 58.350 | 38.462 | 0.00 | 0.00 | 34.01 | 5.52 |
3184 | 3300 | 5.399858 | TGAGAAGTTACTCTTTTCGATCCG | 58.600 | 41.667 | 0.00 | 0.00 | 39.29 | 4.18 |
3189 | 3305 | 4.259056 | CGCGATGAGAAGTTACTCTTTTCG | 60.259 | 45.833 | 0.00 | 0.00 | 39.29 | 3.46 |
3193 | 3309 | 2.531206 | GCGCGATGAGAAGTTACTCTT | 58.469 | 47.619 | 12.10 | 0.00 | 39.32 | 2.85 |
3194 | 3310 | 1.202313 | GGCGCGATGAGAAGTTACTCT | 60.202 | 52.381 | 12.10 | 0.00 | 37.73 | 3.24 |
3204 | 3320 | 2.565394 | GAACGTACGGCGCGATGAG | 61.565 | 63.158 | 21.06 | 0.00 | 46.11 | 2.90 |
3207 | 3323 | 2.156446 | CAAGAACGTACGGCGCGAT | 61.156 | 57.895 | 21.06 | 0.00 | 46.11 | 4.58 |
3209 | 3325 | 3.101428 | ACAAGAACGTACGGCGCG | 61.101 | 61.111 | 21.06 | 0.00 | 46.11 | 6.86 |
3215 | 3331 | 2.762745 | ACCACCATCACAAGAACGTAC | 58.237 | 47.619 | 0.00 | 0.00 | 0.00 | 3.67 |
3216 | 3332 | 3.056393 | CCTACCACCATCACAAGAACGTA | 60.056 | 47.826 | 0.00 | 0.00 | 0.00 | 3.57 |
3306 | 3425 | 1.078759 | CGTTGACGACAGGGCAGATC | 61.079 | 60.000 | 0.00 | 0.00 | 43.02 | 2.75 |
3492 | 3764 | 4.776795 | TGACAACGATAGCACTAAGACA | 57.223 | 40.909 | 0.00 | 0.00 | 42.67 | 3.41 |
3500 | 3772 | 3.951680 | TCCAGACTATGACAACGATAGCA | 59.048 | 43.478 | 0.00 | 0.00 | 42.67 | 3.49 |
3514 | 3786 | 4.223032 | GGATGAGAACCTTTGTCCAGACTA | 59.777 | 45.833 | 0.00 | 0.00 | 0.00 | 2.59 |
3528 | 3800 | 4.396790 | AGTCTCGACAACTAGGATGAGAAC | 59.603 | 45.833 | 4.95 | 5.62 | 34.57 | 3.01 |
3531 | 3803 | 4.024387 | GCTAGTCTCGACAACTAGGATGAG | 60.024 | 50.000 | 22.55 | 7.70 | 44.17 | 2.90 |
3589 | 3861 | 4.436242 | TTGCGTTGTTACCTTGTTGAAA | 57.564 | 36.364 | 0.00 | 0.00 | 0.00 | 2.69 |
3622 | 3894 | 3.934068 | GACCTTTATTGGTCGGACTCAA | 58.066 | 45.455 | 8.23 | 10.69 | 45.69 | 3.02 |
3646 | 3918 | 5.183713 | TCAAGTTCGGACGGAAACTCTTATA | 59.816 | 40.000 | 0.00 | 0.00 | 36.14 | 0.98 |
3659 | 3931 | 0.935196 | AACACGCTTCAAGTTCGGAC | 59.065 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
3711 | 3983 | 0.173481 | GAGTGCTAGCGGATGTGACA | 59.827 | 55.000 | 10.77 | 0.00 | 0.00 | 3.58 |
3715 | 3987 | 0.105593 | CATGGAGTGCTAGCGGATGT | 59.894 | 55.000 | 10.77 | 0.00 | 0.00 | 3.06 |
3743 | 4015 | 3.506067 | CCACCAATCTGTTTGTACCCTTC | 59.494 | 47.826 | 0.00 | 0.00 | 33.15 | 3.46 |
3755 | 4027 | 3.019564 | GGAAAGATGTCCCACCAATCTG | 58.980 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3808 | 4080 | 5.408299 | CAGTTTTACACCGAGACATGAATGA | 59.592 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3809 | 4081 | 5.408299 | TCAGTTTTACACCGAGACATGAATG | 59.592 | 40.000 | 0.00 | 0.00 | 0.00 | 2.67 |
3810 | 4082 | 5.408604 | GTCAGTTTTACACCGAGACATGAAT | 59.591 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3812 | 4084 | 4.304110 | GTCAGTTTTACACCGAGACATGA | 58.696 | 43.478 | 0.00 | 0.00 | 0.00 | 3.07 |
3826 | 4098 | 1.963515 | GGAATGGCAGTGGTCAGTTTT | 59.036 | 47.619 | 0.00 | 0.00 | 28.09 | 2.43 |
3827 | 4099 | 1.133513 | TGGAATGGCAGTGGTCAGTTT | 60.134 | 47.619 | 0.00 | 0.00 | 28.09 | 2.66 |
3831 | 4103 | 0.537143 | GTGTGGAATGGCAGTGGTCA | 60.537 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3858 | 4130 | 5.717078 | ATGGTGAATGATGCAATATGACC | 57.283 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
3870 | 4142 | 7.450074 | AGCGGTTCTAATAATATGGTGAATGA | 58.550 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
3887 | 4159 | 2.482142 | GCTCTAGCATTGTAGCGGTTCT | 60.482 | 50.000 | 0.00 | 0.00 | 41.59 | 3.01 |
3890 | 4162 | 0.105039 | GGCTCTAGCATTGTAGCGGT | 59.895 | 55.000 | 4.07 | 0.00 | 44.36 | 5.68 |
3897 | 4169 | 3.728474 | CCGCAGGCTCTAGCATTG | 58.272 | 61.111 | 4.07 | 3.10 | 46.14 | 2.82 |
3910 | 4182 | 2.350895 | CACCAGTGATTCCCCGCA | 59.649 | 61.111 | 0.00 | 0.00 | 0.00 | 5.69 |
3911 | 4183 | 3.134127 | GCACCAGTGATTCCCCGC | 61.134 | 66.667 | 0.99 | 0.00 | 0.00 | 6.13 |
3912 | 4184 | 1.746615 | CTGCACCAGTGATTCCCCG | 60.747 | 63.158 | 0.99 | 0.00 | 0.00 | 5.73 |
3913 | 4185 | 1.379044 | CCTGCACCAGTGATTCCCC | 60.379 | 63.158 | 0.99 | 0.00 | 0.00 | 4.81 |
3915 | 4187 | 1.379044 | CCCCTGCACCAGTGATTCC | 60.379 | 63.158 | 0.99 | 0.00 | 0.00 | 3.01 |
3916 | 4188 | 0.038166 | TTCCCCTGCACCAGTGATTC | 59.962 | 55.000 | 0.99 | 0.00 | 0.00 | 2.52 |
3917 | 4189 | 0.706433 | ATTCCCCTGCACCAGTGATT | 59.294 | 50.000 | 0.99 | 0.00 | 0.00 | 2.57 |
3919 | 4191 | 1.133181 | TGATTCCCCTGCACCAGTGA | 61.133 | 55.000 | 0.99 | 0.00 | 0.00 | 3.41 |
3921 | 4193 | 1.136329 | AGTGATTCCCCTGCACCAGT | 61.136 | 55.000 | 0.00 | 0.00 | 33.14 | 4.00 |
3922 | 4194 | 0.679002 | CAGTGATTCCCCTGCACCAG | 60.679 | 60.000 | 0.00 | 0.00 | 33.14 | 4.00 |
3923 | 4195 | 1.379916 | CAGTGATTCCCCTGCACCA | 59.620 | 57.895 | 0.00 | 0.00 | 33.14 | 4.17 |
3924 | 4196 | 1.379044 | CCAGTGATTCCCCTGCACC | 60.379 | 63.158 | 0.00 | 0.00 | 33.14 | 5.01 |
3925 | 4197 | 0.962356 | CACCAGTGATTCCCCTGCAC | 60.962 | 60.000 | 0.00 | 0.00 | 0.00 | 4.57 |
3926 | 4198 | 1.379916 | CACCAGTGATTCCCCTGCA | 59.620 | 57.895 | 0.00 | 0.00 | 0.00 | 4.41 |
3927 | 4199 | 2.048603 | GCACCAGTGATTCCCCTGC | 61.049 | 63.158 | 0.99 | 0.00 | 0.00 | 4.85 |
3928 | 4200 | 0.962356 | GTGCACCAGTGATTCCCCTG | 60.962 | 60.000 | 5.22 | 0.00 | 0.00 | 4.45 |
3929 | 4201 | 1.380302 | GTGCACCAGTGATTCCCCT | 59.620 | 57.895 | 5.22 | 0.00 | 0.00 | 4.79 |
3930 | 4202 | 1.678970 | GGTGCACCAGTGATTCCCC | 60.679 | 63.158 | 31.23 | 0.00 | 35.64 | 4.81 |
3931 | 4203 | 1.678970 | GGGTGCACCAGTGATTCCC | 60.679 | 63.158 | 35.78 | 12.94 | 39.85 | 3.97 |
3932 | 4204 | 1.678970 | GGGGTGCACCAGTGATTCC | 60.679 | 63.158 | 35.78 | 22.10 | 42.91 | 3.01 |
3933 | 4205 | 0.251341 | AAGGGGTGCACCAGTGATTC | 60.251 | 55.000 | 35.78 | 17.15 | 42.91 | 2.52 |
3934 | 4206 | 1.072266 | TAAGGGGTGCACCAGTGATT | 58.928 | 50.000 | 35.78 | 22.64 | 42.91 | 2.57 |
3935 | 4207 | 0.328258 | GTAAGGGGTGCACCAGTGAT | 59.672 | 55.000 | 35.78 | 19.02 | 42.91 | 3.06 |
3936 | 4208 | 0.766674 | AGTAAGGGGTGCACCAGTGA | 60.767 | 55.000 | 35.78 | 16.30 | 42.91 | 3.41 |
3945 | 4217 | 3.198068 | CGACATTGATGAGTAAGGGGTG | 58.802 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
3976 | 4248 | 0.602905 | AAGGTGTTCGTGGTGCTAGC | 60.603 | 55.000 | 8.10 | 8.10 | 0.00 | 3.42 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.