>input_sequence_39374
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-----ATGTTCAACAACATAGTATCCACATGGAACAAGAGGAGGAGAAGCAAATCGCTTGACCAGTTGAATCCTTGTGAG
TGCAGTCC-----TCTGTTTCCGTCTCACTC---TGTTGTCGGCAGAGTCATTTTTCACTGTATGCTTATC--TGTTTCT
TCAGTGCAATATTTAAGGTTTGCCATGAGGAATTTGA-----TCATCTGATTTCTGCTTCTGCAGGGGTGTACAAGACAG
CCGAGCTGTGGCAGGTGAAGGAGCAAGGCGCGCCGCTGCCGCTGCCCCCGCCGAAGAAGCGCAGCTGCTCCATGGTGTTC
ACCCTCAAGGAGATGGAGGAGGCCACCGGCATGTTCAGCGACAAGAACCTCATCGGCAAGGGCGGCTTCGGCCGGGTTTA
CAGGGGCGTGCTCAAAGACGGGCAGGTAAGTTCAGTTTCCACACGAAATACGTACGGCTCTTACTTTCAGATTCAGAAGA
TGGTGTTGTTTTTGTCACCTAGCTACAGTTTTCGGAATTCAGGTTACTGAATGTATGGGCAGGGTCTGAATATTTCCAAA
GAT--------------TTTCAGAAGATTGTGGTGTTTT-GTCATTTAGCTTTTTACATGTGTTTTTCAGATTATATTAG
TATTTAGCACCAATGATTCTGTTGGGAAGAGAACTTCCTCTTTGGTTCTATGCATTTGTCAGTAGG--------------
---ACACACGCGCCTGACCTGAACGTGATAATCACGTCCGGCAGACAGCCCAGATCAGAGTGGTGTGACATTTGCTCCTG
GCATCCATGTCAAGAAAAGCATCTGCCAACCACCAGTCAAATACGATCAAACACCAATAAATTCCAATGATGTTTTATTC
CCCCTTCCAGTTTGACTAGCATAGATACACCAATAAATACCTTTGATCAAGGAGTATGTCATTAGTAGTACTGAATGCGA
TGTTTTATTCCCCCTTCCAGTTTGTAAATCTGTCAGCACCTACCTCGGTA--CCTGGTTTCAGTCCAACTAATGT---CT
TGTTGTTGTGAATGGATGAAGATTGTGGCCATCAAGAAGATGGACCTGCCGACGGCGAAGCAGGCGGACGGCGAGCGGGA
GTTCCGGGTGGAGATCGACATCCTGAGCAGGCTGGACCACCCCAACCTGGTGACGCTGATCGGCTACTGCGCCGACGGGA
AGCACCGGTTCGTGGTCTACGAGTTCATGCCCAAGGGCAACCTGCAGGACGTCCTCAACGGCATCCACGGCGAGGTGAGG
ATGGGGTGGGGGCAACGGCTGCGGATCGCGCTGGGCGCCGCCAGGGGGCTCGCGTACCTGCACTCCACCACCGCCGTCGG
CGTCCCCGTCGTCCACCGGGACTTCAAGTCGAGCAACATCCTCCTCTCGGACCACTTCGAGGCCAAGATCTCGGACTTCG
GGCTGGCCAAGCTGATGCCGCAGGACCTGGACCTGTACGCCACCACCAGGGTGCTGGGCACCTTCGGCTACTTCGATCCT
GAGTACGCGCTGGTAATGGCCACGGCCCTCGCACCATTTCTGCAGAATCCGCCGTGCTGGTCGGGTTCTTGGTTGCACTA
ATGAGTAATGAGGATTCCATCTCGCATGCAGACGGGGAAGCTGACGCTGCAGAGCGACGTGTACGCGTTCGGCGTCGTCC
TCCTGGAGCTGCTCACCGGCCGCCGCGCCATCGATCTCAGCCAGGGGCCTCAGGACCAGAACCTCATCGTCAAGGTACTT
CCTCTCTCCCTCTCA--------------GCCGGCTGCCGCACCGGCATCGTCCGGCACTCCCCGGCGTCCCC-ACTCTG
CTGACCCTCGGCTGATTCTGTCTGCCCGGCTCGTGCTCTGCAGATACACCAGATGGTGGGCGACCGGAAGAAGCTGCGCA
AGGTGGTGGACCGGGACATGGGGAAGGGGTCGTACACGTTGGAGTCGGTGTCCATGTTCGCGGGTCTCGCCGCGCGCTGC
GTCTGCTTCGAGAGCGCCGGCCGGCCGGCCATGCAGGACTGCGTCAAGGAGCTCCAGCTCATCATGTACGCCAACATGAA
GATATGA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------
>chr5B_1_TraesCS5B01G196600
AGAGAGAAAGCTTCTTTGACAACGGCTACATCGCAACCACCGCCACCTCTACCACCGCTCGCTCCTCCTCAGTCCCTGGT
CGCCATCAGGCCCTTCCGATTCTTCGTCCCCGATGTCCCAATCACTCACCATCCCTCCAAGTTCTGCTCAACCATTTCCT
CTTTGCAATGCACCAACCATT-AACCAATGAACCCTCCTTCCAATCCACCAAACTGCAAGAAACAACTGACACCCAGCTC
TCCCTCCCTCCC----CGGCTTTCGCCTTCGCCGGCAAAGTTGATCGCAATCTCACACTACTGATCGGCCAGTGATCACT
GATGCACACGCTGCTGCTGCTGCTGCTGCTGCATCAACACATCATCCATTTGGATTCGGGCATTTCTTGGCACATAAGCA
CCCTCCTCCTCCACACGCTTTGCTAGTCCAAGCATGCTTGCTGCCTATTCCTTTACTTCTTTGCCAACGCTAGTAGGAGC
CTTTAGGTGGCGCGTCTCCTCCTAGCTACGTAGCTCCCAAGAGATCAGCCCATC-----CCCTAGCTTCTTATCTCTGAA
TCC--------CGCCTGT-----ACTGCACGCATTCCTTAGTCTTGTCCTCTCACCCTTCTGTCCTCTTCATCTCTTCCG
TA--------CCGTCCGACGAAGCCTCGCCGCTCCACCGCGCAGTGCATTCTCGTTTCTCAGCCGGTTCAGGTTCAGCCT
TGTCCCCAGTGTTTTGC-TTGTCCTGTTCATCATGTGCTTTGCTTTTAGGTGGCGCTGGGATTGATTTGTCTGAC-TGGT
TCTGGATTTCTGATACTTGCAGTGGCAGCCATTCTTCCAGCACATGCGCCTTTTGTTACAAAGGAGGTGCAGGGGAGACT
GTGTGCCTTGGGCTGACTGGAGCAAGGAATATCTTTGAACCT-TTGATCAAGGAAAGGTATATTGGAATTAGATACTTTT
GATTACAAGGAAAAAAGTTGTGACGACAACGACGAAGGCGCAGACCGCAGAAAGCCTCGGACAGTAATCTCAA-------
----GATGTTCAACAACATAGTATCCACATGGAACAAGAGGAGGAGAAGCAAATCGCTTGACCAGTTGAATCCTTGTGAG
TGCAGTCC-----TCTGTTTCCGTCTCACTC---TGTTGTCGGCAGAGTCATTTTTCACTGTATGCTTATC--TGTTTCT
TCAGTGCAATATTTAAGGTTTGCCATGAGGAATTTGA-----TCATCTGATTTCTGCTTCTGCAGGGGTGTACAAGACAG
CCGAGCTGTGGCAGGTGAAGGAGCAAGGCGCGCCGCTGCCGCTGCCCCCGCCGAAGAAGCGCAGCTGCTCCATGGTGTTC
ACCCTCAAGGAGATGGAGGAGGCCACCGGCATGTTCAGCGACAAGAACCTCATCGGCAAGGGCGGCTTCGGCCGGGTTTA
CAGGGGCGTGCTCAAAGACGGGCAGGTAAGTTCAGTTTCCACACGAAATACGTACGGCTCTTACTTTCAGATTCAGAAGA
TGGTGTTGTTTTTGTCACCTAGCTACAGTTTTCGGAATTCAGGTTACTGAATGTATGGGCAGGGTCTGAATATTTCCAAA
GAT--------------TTTCAGAAGATTGTGGTGTTTT-GTCATTTAGCTTTTTACATGTGTTTTTCAGATTATATTAG
TATTTAGCACCAATGATTCTGTTGGGAAGAGAACTTCCTCTTTGGTTCTATGCATTTGTCAGTAGG--------------
---ACACACGCGCCTGACCTGAACGTGATAATCACGTCCGGCAGACAGCCCAGATCAGAGTGGTGTGACATTTGCTCCTG
GCATCCATGTCAAGAAAAGCATCTGCCAACCACCAGTCAAATACGATCAAACACCAATAAATTCCAATGATGTTTTATTC
CCCCTTCCAGTTTGACTAGCATAGATACACCAATAAATACCTTTGATCAAGGAGTATGTCATTAGTAGTACTGAATGCGA
TGTTTTATTCCCCCTTCCAGTTTGTAAATCTGTCAGCACCTACCTCGGTA--CCTGGTTTCAGTCCAACTAATGT---CT
TGTTGTTGTGAATGGATGAAGATTGTGGCCATCAAGAAGATGGACCTGCCGACGGCGAAGCAGGCGGACGGCGAGCGGGA
GTTCCGGGTGGAGATCGACATCCTGAGCAGGCTGGACCACCCCAACCTGGTGACGCTGATCGGCTACTGCGCCGACGGGA
AGCACCGGTTCGTGGTCTACGAGTTCATGCCCAAGGGCAACCTGCAGGACGTCCTCAACGGCATCCACGGCGAGGTGAGG
ATGGGGTGGGGGCAACGGCTGCGGATCGCGCTGGGCGCCGCCAGGGGGCTCGCGTACCTGCACTCCACCACCGCCGTCGG
CGTCCCCGTCGTCCACCGGGACTTCAAGTCGAGCAACATCCTCCTCTCGGACCACTTCGAGGCCAAGATCTCGGACTTCG
GGCTGGCCAAGCTGATGCCGCAGGACCTGGACCTGTACGCCACCACCAGGGTGCTGGGCACCTTCGGCTACTTCGATCCT
GAGTACGCGCTGGTAATGGCCACGGCCCTCGCACCATTTCTGCAGAATCCGCCGTGCTGGTCGGGTTCTTGGTTGCACTA
ATGAGTAATGAGGATTCCATCTCGCATGCAGACGGGGAAGCTGACGCTGCAGAGCGACGTGTACGCGTTCGGCGTCGTCC
TCCTGGAGCTGCTCACCGGCCGCCGCGCCATCGATCTCAGCCAGGGGCCTCAGGACCAGAACCTCATCGTCAAGGTACTT
CCTCTCTCCCTCTCA--------------GCCGGCTGCCGCACCGGCATCGTCCGGCACTCCCCGGCGTCCCC-ACTCTG
CTGACCCTCGGCTGATTCTGTCTGCCCGGCTCGTGCTCTGCAGATACACCAGATGGTGGGCGACCGGAAGAAGCTGCGCA
AGGTGGTGGACCGGGACATGGGGAAGGGGTCGTACACGTTGGAGTCGGTGTCCATGTTCGCGGGTCTCGCCGCGCGCTGC
GTCTGCTTCGAGAGCGCCGGCCGGCCGGCCATGCAGGACTGCGTCAAGGAGCTCCAGCTCATCATGTACGCCAACATGAA
GATATGAGCACGTTTTGAGAACGGCCGCGGATCTTTGCTTGGTTCAGTCTTGGAATTGTTATTCGAG---GAAGAGGAAG
AGGATGGCGAAACTTGTACAGAATTTTAGTACCCCGTTCCATCCATATTAATTGCGGCTGATCTAGTACAACTTTATACT
ATATCAGCGACAATTAATACGGATCGAAAAGAGTAACTTCTCATCGCGCCGTACGTTCTTGT-GATGGTGGTAGGATTGT
TTCAAAGTCTTGAAATGAGAGGGCTTGGTTTGTGATGTCCAAG--AAATGGTGTCTCAAGAAGAGATCTGCCCTGTCGTC
AACGATCGATGGAGGGAGCAAGTGATTTTTTTTTTCTTTTGGATTTGTACAGATGGTTAGAATCCCTGACTTTTGTATTA
TTGTGATGCACATTGCCACTTATATTAATTATTAAATAAAATATAAAATAAAGTCAATCACGGCG---------------
--------------------------------------------------------------------------------
---------------------------------------------------------AA-CAACACTTTCAAGAAGAGAT
AAATGTCTTAGTGCTATCGTTGTCATAGTCTGGACAAAGGTTCTCATCCTAGTTGTCGAGACTAGCAACGAATATCGACA
CAATAGCAAGTAGACACTGTTTTCAACAAGGTAACAACGCAAATTCGTCGCGGTTGAGTCCGACCAATAAAGGTCAATAT
AAGAGTTTCCGTCCGAACTTGAAGCGTGTTCTAATCAATATATCAATGACAGATCATTCGATTGTCACATCCGCTAGCAC
TCCATGCCAAAACAGAAGGGTACAAACAGATTGGTGGGACATCTTTCCACCTTAGACCATTGCCACTGGCTTTAGGGGTT
CATTCATGTCTCGGTGTAAAACTGACCACTGCCATTCCACACCGGCACGGGTCATATTGCATCATTCACCATATTATTAG
AACCGCTACAATGCTAGAGCCTGCGGGGAATCACTGGTGCAGGGGAATCACTGGTGCACCCCTTACTCATCAATGTCGTA
TGTTGCTGCTAGCACCACGAACACCTTCTTACTATGACCGTTCCCC
>chr5D_1
AGAGAGAAAGCTTCTTTGGCAACGGCTACATCGCAACCACCGCCACCTCTACCACCGCT-------CCTCAGTCCCTGGT
CGCCATCAGGCCCT-CCGTTTCTTCCTCCCCAATGTCCCAATCACTCACCATCCCTCCAAGTTCTGCTCAACCATTTCCC
CTTTGCAATGCACCAACCATT-AACCAATAAACCCTCCTTCCAATCCACCAAACTGCAAGAAACAACTGACACCCAGCTC
TCG----CTCCC----CGGCTTCCGCCTTCGCCGGCAAAGTTGATCGCAATCTCACACTACTGATCGCCCAGTGATCACT
GACCA-----------------------------------ATCGTCCATTTGGATTCGGGCATTTCTTGGCACATAAGCA
CCCTCCTCCTCCACACGCTTTGCTACTCGAAGCATGCTTGCTGCCTATTCCTTTACTTCTTTGCCAACGCTAGTAGGGGC
CTTTAGGTGGCGCGTCTCCTCCTAGGTACGTAGCTCCCAAGAGATCAGCCCGTT-----TCCTAGGTTCTTATCTCTGAA
TCCTTCGCACACGCCTGT-----ACTGCACGCACTCCTTGCTCCTGTCCTCTCCG----------------TCTCTTCCG
TG--------CCGTCCGGCGAATCCTCGCCGCGCC--------GTGCATTCAGGTCCCACGATCGGTTCAGGCGCAGCCT
TGTCTCCAGTGTTTTGC-TTGTCCTGTTCATCATGTGCTTTGCTTTTAGGTGGCGCTGGGATTGATTTGTCTGTCTC-GT
TCTGAATTTCTGATACTTGCAGTGGCAGCCATTCTTCCAGCACATGCGCCTTTTGTTACAAAGGAGGTGCAGGGGAGACT
GTGTGCCTTGGGCTGACTAGAGCAAGGAATATCTTTGAGTCCATTGATCAAGGAAAGGTATATTGGAATTAGATACTTCT
GATTACTAGGAAAAAAGTTGTGCCGACAACGACGAAGGCGCAGACCGCAGAAAGCTTCGGGCAGTAATCTCAACAGGCAA
AGAAGATGTTCAACAACATAGTCTCCACATGGAACAAGAGGAGGAGAAGCAAATCGCTTGACCAGTTGAATCCTTGTAAG
TGCATCCCCTTGTTTTGTTTCCTTCCCACTT---TGTTGTCGGC--AGTCATTTGTCACTGTATGATCATC--TGTTTCT
TCAGTGCAGCATTTAAGGCTTGCCATGAGGAATTTGA-----TCATCTGATTTCTGCTTCTGCAGGGGTGTACAAGACGG
CCGAGCTGTGGCAGGTGAAGGAGCCGCT---GCCGCTGCCGCCGCCGGCGCCGAAGAAGCGCAACTGCTCCATGGTGTTC
ACCCTCAAGGAGATGGAGGAGGCCACCGGCATATTCAGCGACAAGAACCTCATCGGCAAGGGCGGCTTCGGCCGGGTTTA
CAGGGGCGTGCTCAAAGACGGGCAGGTAACTTCAGTTTCCACACGAAATACGTACGGCTCTTACTTCCAGATTCAGAAGA
TGGTGTTGTTTTTGTCACTTAGCTACAGTTTTCGGAATTCAGGTTACTGAATGTATGGGCAGGGTCTGAATATTTCCAAA
GCAGATACGTCCCTTAATTTCAGAAGATTGTGGTGTTTTTGTCATTTAGCTTTATGTGTGTGTTTTTCAGATTATATTAG
TG-TTAGCACCAATGATTCTGTTGGGAAGAGAACTTCCTCTTTGGTTCTATGCATTTGTCCCATTGATTAAGTGCTGTAG
GACACACACACCCCTGACCTGAACGTGATAATCACGTCCGGCAGGCAGCCAAGATCAGAGTGGTGTGACATTTGCTCTTG
GCATCCTTGTCAAGAAAAGCATCGGCCAACCACCAGTCAAATACGATCAAACACCAATTAATTCCAATGA----------
------------------------------------------------------TATGTCATTAGTAGCACTGAATGCGA
TGTTTCATTCTCCCTTCCAGTTTGTAAATCTGTCAGCACCTAC--------------TTTCAGTCCAACTAATGTGTTCT
TGTTGCTGTGAATCGATGAAGATCGTGGCCATCAAGAAGATGGACCTGCCGACGGCGAAGCAGGCCGACGGCGAGCGGGA
GTTCCGGGTGGAGATCGACATCCTGAGCAGGCTGGACCACCCCAACCTGGTGACGCTGATCGGCTACTGCGCCGACGGGA
AGCACCGGTTCGTGGTCTACGAGTTCATGCCCAAGGGCAACCTGCAGGACGTCCTCAACGGCATCCACGGCGAGGTGAGG
ATGGGGTGGGGGCAGCGGCTGCGGATCGCGCTGGGCGCCGCCAGGGGGCTCACGTACCTGCACTCCACCACCGCTGTCGG
CGTCCCCGTCGTCCACCGGGACTTCAAGTCCAGCAACATCCTCCTCTCGGACCACTTCGAGGCCAAGATCTCGGACTTCG
GGCTGGCCAAGCTGATGCCGCAGGACCTGGACCTGTACGCCACCACCAGGGTGCTCGGCACCTTCGGCTACTTCGACCCC
GAGTACGCGCTGGTAATGGCCACGACCCT-GCACCATTTTTGCAGAACTCGCCGTGCTGATCGGGTTCCTGGCTGCACTA
ATGAGGATTC----TTCCATCTCGCATGCAGACGGGGAAGCTGACGCTGCAGAGCGACGTGTACGCGTTCGGCGTCGTCC
TCCTGGAGCTGCTCACCGGCCGCCGCGCCATCGATCTCAGCCAGGGGCCTCAGGACCAGAACCTCATTGTCAAGGTACT-
---------CTCTCT--------------GCCTGCTGCCACGCCTGCATCGTCCGGCGCTCCCCGGCGTCCCC-GCGCTG
CTGACCCTCGGCTGATTCTATCTGTCCGGCTCGTGCTCTGCAGATACACCAGATGGTGGGGGACCGGAAGAAGCTGCGCA
AGGTGGTGGACCGGGACATGGGCAAGGGGTCGTACACGCTGGAGTCGGTGTCCATGTTCGCCGGCCTCGCCGCGCGCTGC
GTCTGCTTCGAGAGCGCCGGCCGGCCGGCCATGCAGGACTGCGTCAAGGAGCTCCAGCTCATCATGTACGCCAACATGAA
GATATGAGCACGTTTTGAGAACGGCCGCGGGTCTTTGCTTGGTTCAGTCTTGGGATTTTTACTCGAG---GAAGAGGAAG
AAGATGGCGATACAT------AATTTTAGTACCCCGTTCCATTCATATTAATTGTGGCTGATCTAGTACAACTTTATACT
ATATCAACGGCAATTAATATGGATTGAAGGGAGTAACTTTTCGTTGCGCCAGACGTTCTTGTGGATGGTGGTAGGATTGT
TTCAAAGTCTTGAAATGAGAGGGCTTAGTTTGCGATGTCCAAA--AAATGGTGTCTCGAGAAGAAATCTGCCCTGTCGTC
AACGATCGATGGAGGGAGCAAGTGG-TTTTTCTTTCTTTTGGATTTGTACAGATGGTTAAAATCCCTGACTTTTGTATTA
TTGTGTTGCACATTGCCACTTATATTAATTATTAAATAAAATATAAAATAAAGTCAATCATGGCGGACCATTATAAGATA
--------------------------------------------------------------------------------
------------------TATGAAATTAACAAATATAAATAAATTTACTTCTTCCGCAA-CAACACTTTCAAGAAGAGAT
AAACGTCTAAGCGCTATAGTTGTGACAGTCTGGACAAAGATTTTTATCCTAGTTGTCGAGACTAGCAACGAATATCAACA
CAACAGTAAGTAGACAACGTCTTCAACAATGTAACAATGCAATTTCATCACGGCTGAGCCCGACCAATAAATGTTAGGAC
AGTAGTTTCACTCGCAT-TTGAAGCGTGTTCTAATCAACATATTGATGACAGATCATTCGATAGTCGCATCCGCTAGCAC
TCTATGCCAAAACTAAAGGGTATGAG-AGATTGGTGGGACATCTTTTCACCTTAGACCATTGCCACTGCCTTCAGGGGTC
TGTCCATGTCTCGGCGTGGATCCGACCACTGCCATTCCACACCAGCGCGAGTCACATTGTAGCATTCACCATAGTATTGG
AGCCGCTAGAGTGCTA----------------------------------------------------------------
----------------------------------------------
>chr5A_2
GAGA--AAAGCTTCTTTGGCAACGGCTACATCGCAACCACCGCCACCTCTACCACCGCT-------CCTCAGTCCATGGT
CGCCATCAGGCCCT-CCGTTTCTTCCTCCCCGACGTCCCAATCACTCACCATCCCTCCAAGTTCCGCTCAACCATTTCCC
CTTTGCAATGCACCAACCATTTAACCAATGAGCCCTCCTTCCAATCCACCAAACTGCAAGGAACAACTGACACCCAGCTC
TCG----CTCCCTCCCCGGCTTCCGCCTTCGCCGGCAAAGCTGATCGCAATCTCACACTGCTGATCGGCCAGTGATCACT
GGCCC-----------------------------------ATCGTCCGTTTGGATCCGGGCATTTCTTGGCACATAAGCA
CCCTCCTCCTCCACACGCTTTGCTACTCCAAGCATGCTTGCTGCCCATTCCTTTACTTCTTTGCCAACGCTAGTAGGAGC
CTCTAGGTGGCGCGTCTCCTCCTAGCTACGTAGCTCCCAAGAGATCAACCATCTTATCGCCCTAGGTTCTTATCTCTGAA
TCCTTCGCACACGCCTGTGCTGCACTGCACGCACCCCTTTGTCTCGTCCTCTCCT----------------CCTCCTGTC
CTCTTCATCTCCGTCCGGTGAAGCCTCGCCGCGCC--------GTGCATTCAGGTCTCACGATCGGTTCAGGTGCAGCCT
TGTCTCGTGTGTTCTGCTTTGTCCTGTTCATCGTGCGCTTTGCTTTTAGGTGGCGCTGGGATTGATTTCTCTGCCATGGT
TCTGAATTTCTGATACTTGCAGTGGCAGCCATTCTTCCGGCACATGCGCCTTTTGTTACAAAGGAGGTGCAGGGGAGACT
GTGTGCCTTGGGCTGACTGGAGCAAGGAATATCTTTGAACCT-TTGATCAAGGAAAGGTATATTGGAATTGGATACTTCT
GGTTACAAGCAAAAAAGTTGTGACGACAACGACGAAGGCGCAGACCGCAGAAAGCCTTGGACAGTAATCTCAA-------
----GATGTTCAACAACATAGTCTCGACGTGGAACAAGAGGAGGAGAAGCAAATCGCTTGACCAGTTGAATCCTTGTGAG
TGCAGCCC-----TCTGTTTCCTTCACACTTTGTTGTTGTCGGCAGAGTCATTTGTCACTGTATATGATCATATGTTTCT
TCAGTGCAGCATCTAAGGCTTGGCATGAGGAATTTGATCATCTCATCTGATTTCTGCTTCTGCAGGGGTGTACAAGACGG
CCGAGCTGTGGCAGGTGAAGGAGCCTCT---GCCGCTGCCG------GCGCCGAGGAAGCGCAACTGCTCCATGGTGTTC
ACCCTCAAGGAGATGGAGGAGGCCACCGGCATGTTCAGCGACAAGAACCTCATCGGCAAGGGCGGCTTCGGCCGGGTTTA
CAGGGGCGTGCTCAAAGACGGGCAGGTAAGTTCAAC-----------------------------------TTCAGATGA
TGTTGTTGTTTTGTCT--CTTGGTACAGTTTTCAGATTACTGA---------GTATGGGCAGAGTCTGAACACTTTGAAA
GCAGATACGTCCCTCAATTTCAGAAGATTGTGGTGTTTTTGTCATTTAGCTTTTTATGTGTGTTCTTCAGATTACATTAG
TG-TTAGCACCAATGATTCTGTTGGGAAGAGAACTTCCTCTTTGGTTCGACGCATTTGTCCCATTGATTAAGTGCTGTAG
GACACACACACCCCTGACCTGAACGTGATAATCACGTCCGGCAGACAGCCAAGATCAGAGTGGTGTGACATTTGCTCTCG
GCATCCATGTCAAGAAAAGCATCTGCCAACCACCAGTCAAATACGATCAAACACCAATAAATTCCAATGA----------
------------------------------------------------------TATGTCATTAGTAGCACCGAATGCGA
TGTTTCATTCTCCCTCCCAGTTTGTAAATCTGTCACCACCTACCTCGGTATGCCTGGTTTCGGTCCAACTAATGCGTTCT
TGCTGCTGTGAATGGATGAAGATCGTGGCCATCAAGAAGATGGACCTGCCGACGGCGAAGCAGGCGGACGGCGAGCGGGA
GTTCCGGGTGGAGATCGACATCCTGAGCCGGCTGGACCACCCCAACCTGGTGACGCTGATCGGTTACTGCGCCGACGGGA
AGCACCGGTTCGTGGTCTACGAGTTCATGCCCAAGGGCAACCTGCAGGACGTGCTCAACGGCATCCGCGGCGAGGTGCGG
ATGGGGTGGGGGCAGCGGCTGCGGATCGCGCTGGGCGCCGCCAGGGGGCTCGCGTACCTGCACTCCACCACCGCCGTCGG
CGTCCCCGTCGTCCACCGGGACTTCAAGTCCAGCAACATCCTCCTCTCCGACCACTTCGAGGCCAAGATCTCCGACTTCG
GGCTCGCCAAGCTCATGCCGCAGGACCTGGACCTGTACGCCACCACCAGGGTGCTCGGCACCTTCGGCTACTTCGACCCC
GAGTACGCGCTGGTAATGCC-----------CACCATTTTTGCAGAACTCGCCGTGCTGGTCGGGTTCCTGGCGACACTA
ATGGGGATTC----TTCCATCTCGCGTGCAGACGGGGAAGCTGACGCTGCAGAGCGACGTGTACGCGTTCGGCGTCGTCC
TCCTGGAGCTGCTCACCGGCCGCCGCGCCATTGATCTCAGCCAGGGGCCTCAAGACCAGAACCTCATCGTCAAGGTACT-
---------CTCTCTCTCTCTCCCTCTCTGCCGGCTGCCCCACCTGCATCGTCCGGCGCTCGCCGGCGTCCCCGGCGCTG
CCGGCCCTCGGCTGATTCTGACTGTCCGGCTCGTGCTCTGCAGATACACCAGATGGTGGGCGACCGGAAGAAGCTGCGCA
AGGTGGTGGACAGGGACATGGGCAAGGGGTCGTACACGCTGGAGTCGGTGTCCATGTTCGCGGGCCTCGCCGCGCGCTGC
GTGTGCTTCGAGAGCGCCGGCCGGCCGGCCATGCAGGACTGCGTCAAGGAGCTCCAGCTCATCATGTACGCCAACATGAA
GATATGAGGACGTTTTGAGA----------------------TTCAGTCTTGGAATTTTTACTCGAAGAAGAAGAGGAAG
AAGATGGCGAAACTTGTACAGAATTTTAGTACTCTTCCG-ATCCATATTAATCGTGGCTGGTCTAGTACAACTATATACT
AGATCAGCGACAATTAATATGAATTGATGGGAGTAACTTTTCGTTGCGCCCGATGTTCATGTGCATAGTGGTGGGATTGT
TTCAAAGTCCTGAAACGAGAGGGCTTAATTTGTGATGTCCAAAGAAAATGGTGTCCCAAGGAGAAATCTGCCCTGTCGTC
AACGATTGATGGAGGGAACAAGTGGTTTTCTTATTCTTTTGAATTTGTACAGATGGTTAGAATCC-TGACTTTTGTATTA
TTGTGATGCACATTGCCACTTATATTAATTATTAAATAATATACAAAATAAAGTCAATCGCGGCGAACCATTATAAGATA
CTCCCTTGCTTCCGTCGCAGTCGTCCATATTGGTTAAATTTATTGATTAAACTTAAATATTAAAAACACGGGTGCACTAC
ATTATGAAATAAAGGGAGTATGAAATTAACAAATGTAACTAAATCTACTTCTTCCGCAACCAACACTTTCAAGAAGATAT
AAACGTCCTGGCACTATCATTATCACAGTCTAGACAAAGATTTTCATCCTAGTTGTAGAGACTAGCAATGAATATCGACA
CAATAGCAAGTAGACACC-TCTTCAACAAGGTAACAACGCAAATTCGTCACGGCTGAGCCCGACCTATAAAGGTCAAGAT
AAGAGTTTTCACCCGAACTTGAAGCGTGTTCTAATCAACACACCGATGACAGATTGTTCGATAGTCGCATCCGCTGGCAT
TCCATGTCAAAACAAAAGGGTACAAATAGATTGGTGGGACATCTTTCCACCTTAGACCATTGCCACTGGCTTTAGGGGTC
TGTCCATGTCTCGGTGTGGAACCGACCACTACCATTCCACACCGGCACGAGTCATATTGCAACATTCACCATATTGTTGG
AGACACTAAAGTGCTAGATGCCAGCGAAGAAC----------------CACTGGTGGACCCCTTACTCATCAATGTCATA
CGCTGCTACTAGCACCACGAACACCCTCTTGCTATGGCCGTTCCCC
>SNPs
------------------S----------------------------------------SSSSSSS--------------
--------------S---S------S-----------------------------------------------------S
--------------------------------------------------------------------------------
--SSSSS---------------S---------------------------------------------------------
--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------------------------------------
-------------------------S------------------------------------------------------
---------------------------------------------------S-S-----------S--------------
---------------------------------S-----S-------------SSSSSSSSSSSSSSSSSS---------
-S---------------S--------------S--SSSSSSSS--------SS--S--S-SSS----------S------
----S--------------------------------------------------------------------S------
----S---------------------------------------------------------------------------
------------------------------------------------------------------------------S-
--------------------------------------------------------------------------------
----------------------S---------------------------------------------------------
-----S----------------S--S----S-----------------------S----------S-S------------
--------SS--------S-----------------------------------------------------------S-
------------------------SSSSSSS-----------S---SS---------------S----------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
-SS-----------------------------------------------------SS----------------------
-SS---------------------------------------------------------SSSSS---------------
---------S-S--------------------------------------S--------------------------S--
----------------------------------------------------------------------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S-----------
-----S----S---------------------------------------------------------------------
-----S-----------------S--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
------------------------------S-------------------------------------------------
-------------------------------------------------------S--------------------S--S
------------------------S----S---------S-------SS-------------------S---S-------
-----S-S-SSSSS------------------------------------------------------------------
-------------------------------------------------------------------------------S
SSSSSSSSS-----S------------------------S----S------------S----------------S-S---
------------------------S-------------------------------------------------------
----------------------S---------------S-------------------------S---------------
--------------------------------------------------------------------------------
------------------------------S--------------------------S---S------------------
-S----------------------------------------------------S-------------------------
-------------------S----S---SS---------S--S-S-----SS----------------------------
--------------------------S---------------S---------------------S---------------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S-------S-------------S-------------S--S-------------------------------------
-----------------S--S----------------------------S---S----S------------------S--
----------S---------------------------S-----S-----------------S---S-------------
--------------S-----------S----------------------------------------------------S
SS-S-------------SS---S--------------------------S-----------S----------------S-
-S------S-S-------SS-SSSS-SSS-S-SSSSSSSSSSSSSSSS--------S--------------------S--
S-S----S-----------------S----S-----S---------
>forward_332
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TGATCACT
GATGCACACGCT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------
>reverse_1920
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------C
CCCCTTCCAGTTTGACTAGC------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------
>forward_1143
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---AGTGCAGTCCTCTGTTTCCG---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>reverse_2560
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------T
GAGTACGCGCTGGTAATGG-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>forward_2557
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GCACCTTCGGCTACTTCGAT---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>reverse_4188
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------GAATCACTGGTGCAGGGGAA---------------------------------
----------------------------------------------
