Multiple sequence alignment - TraesCS5B01G192700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G192700 chr5B 100.000 2462 0 0 1 2462 347927168 347929629 0.000000e+00 4547
1 TraesCS5B01G192700 chr5B 85.075 402 45 11 1061 1462 347677612 347677998 1.770000e-106 396
2 TraesCS5B01G192700 chr5D 90.994 2043 124 28 452 2462 302895065 302897079 0.000000e+00 2699
3 TraesCS5B01G192700 chr5D 88.089 403 40 7 1061 1462 302876684 302877079 2.870000e-129 472
4 TraesCS5B01G192700 chr5A 93.802 1194 37 11 452 1617 395002014 395000830 0.000000e+00 1760
5 TraesCS5B01G192700 chr5A 89.097 853 65 19 1617 2461 394998564 394997732 0.000000e+00 1035
6 TraesCS5B01G192700 chr5A 89.250 400 35 8 1064 1462 395063005 395062613 6.120000e-136 494
7 TraesCS5B01G192700 chr7B 95.918 196 8 0 264 459 625697883 625698078 3.950000e-83 318
8 TraesCS5B01G192700 chr7B 95.263 190 9 0 267 456 99684462 99684273 3.980000e-78 302
9 TraesCS5B01G192700 chr7B 95.263 190 9 0 267 456 129963822 129963633 3.980000e-78 302
10 TraesCS5B01G192700 chr1B 95.812 191 8 0 266 456 17801543 17801733 2.380000e-80 309
11 TraesCS5B01G192700 chr3B 95.213 188 9 0 268 455 641780323 641780136 5.150000e-77 298
12 TraesCS5B01G192700 chr3B 93.846 195 12 0 266 460 765656640 765656446 6.660000e-76 294
13 TraesCS5B01G192700 chr4B 94.737 190 10 0 267 456 660752616 660752805 1.850000e-76 296
14 TraesCS5B01G192700 chr4A 94.737 190 10 0 265 454 663267777 663267966 1.850000e-76 296
15 TraesCS5B01G192700 chr4A 93.878 196 11 1 265 459 710670477 710670672 6.660000e-76 294


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G192700 chr5B 347927168 347929629 2461 False 4547.0 4547 100.0000 1 2462 1 chr5B.!!$F2 2461
1 TraesCS5B01G192700 chr5D 302895065 302897079 2014 False 2699.0 2699 90.9940 452 2462 1 chr5D.!!$F2 2010
2 TraesCS5B01G192700 chr5A 394997732 395002014 4282 True 1397.5 1760 91.4495 452 2461 2 chr5A.!!$R2 2009

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 121 0.033366 GTGGAATGTTGGTTGGCCAC 59.967 55.0 3.88 0.0 46.01 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1477 1526 0.883153 TTGCAGCGCTCAAACATCAT 59.117 45.0 7.13 0.0 0.0 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.173321 GGTTAAATTAGTTGCATGTGTCATTC 57.827 34.615 0.00 0.00 0.00 2.67
26 27 7.008266 GGTTAAATTAGTTGCATGTGTCATTCG 59.992 37.037 0.00 0.00 0.00 3.34
27 28 5.627499 AATTAGTTGCATGTGTCATTCGT 57.373 34.783 0.00 0.00 0.00 3.85
28 29 5.627499 ATTAGTTGCATGTGTCATTCGTT 57.373 34.783 0.00 0.00 0.00 3.85
29 30 3.542712 AGTTGCATGTGTCATTCGTTC 57.457 42.857 0.00 0.00 0.00 3.95
30 31 2.096268 AGTTGCATGTGTCATTCGTTCG 60.096 45.455 0.00 0.00 0.00 3.95
31 32 1.789506 TGCATGTGTCATTCGTTCGA 58.210 45.000 0.00 0.00 0.00 3.71
32 33 2.345876 TGCATGTGTCATTCGTTCGAT 58.654 42.857 0.00 0.00 0.00 3.59
33 34 2.741517 TGCATGTGTCATTCGTTCGATT 59.258 40.909 0.00 0.00 0.00 3.34
34 35 3.929610 TGCATGTGTCATTCGTTCGATTA 59.070 39.130 0.00 0.00 0.00 1.75
35 36 4.032786 TGCATGTGTCATTCGTTCGATTAG 59.967 41.667 0.00 0.00 0.00 1.73
36 37 4.508971 CATGTGTCATTCGTTCGATTAGC 58.491 43.478 0.00 0.00 0.00 3.09
37 38 3.845178 TGTGTCATTCGTTCGATTAGCT 58.155 40.909 0.00 0.00 0.00 3.32
38 39 3.612423 TGTGTCATTCGTTCGATTAGCTG 59.388 43.478 0.00 0.00 0.00 4.24
39 40 2.603110 TGTCATTCGTTCGATTAGCTGC 59.397 45.455 0.00 0.00 0.00 5.25
40 41 2.603110 GTCATTCGTTCGATTAGCTGCA 59.397 45.455 1.02 0.00 0.00 4.41
41 42 3.246226 GTCATTCGTTCGATTAGCTGCAT 59.754 43.478 1.02 0.00 0.00 3.96
42 43 4.444388 GTCATTCGTTCGATTAGCTGCATA 59.556 41.667 1.02 0.00 0.00 3.14
43 44 5.119279 GTCATTCGTTCGATTAGCTGCATAT 59.881 40.000 1.02 0.00 0.00 1.78
44 45 4.972286 TTCGTTCGATTAGCTGCATATG 57.028 40.909 1.02 0.00 0.00 1.78
45 46 3.977427 TCGTTCGATTAGCTGCATATGT 58.023 40.909 4.29 0.00 0.00 2.29
46 47 3.981416 TCGTTCGATTAGCTGCATATGTC 59.019 43.478 4.29 0.00 0.00 3.06
47 48 3.121944 CGTTCGATTAGCTGCATATGTCC 59.878 47.826 4.29 0.00 0.00 4.02
48 49 4.058124 GTTCGATTAGCTGCATATGTCCA 58.942 43.478 4.29 0.00 0.00 4.02
49 50 4.541973 TCGATTAGCTGCATATGTCCAT 57.458 40.909 4.29 0.00 0.00 3.41
50 51 4.248058 TCGATTAGCTGCATATGTCCATG 58.752 43.478 4.29 0.00 0.00 3.66
58 59 2.494059 GCATATGTCCATGCCGTTAGT 58.506 47.619 4.29 0.00 44.55 2.24
59 60 2.878406 GCATATGTCCATGCCGTTAGTT 59.122 45.455 4.29 0.00 44.55 2.24
60 61 3.315191 GCATATGTCCATGCCGTTAGTTT 59.685 43.478 4.29 0.00 44.55 2.66
61 62 4.513692 GCATATGTCCATGCCGTTAGTTTA 59.486 41.667 4.29 0.00 44.55 2.01
62 63 5.181245 GCATATGTCCATGCCGTTAGTTTAT 59.819 40.000 4.29 0.00 44.55 1.40
63 64 6.293955 GCATATGTCCATGCCGTTAGTTTATT 60.294 38.462 4.29 0.00 44.55 1.40
64 65 7.648142 CATATGTCCATGCCGTTAGTTTATTT 58.352 34.615 0.00 0.00 0.00 1.40
65 66 5.303747 TGTCCATGCCGTTAGTTTATTTG 57.696 39.130 0.00 0.00 0.00 2.32
66 67 5.004448 TGTCCATGCCGTTAGTTTATTTGA 58.996 37.500 0.00 0.00 0.00 2.69
67 68 5.473846 TGTCCATGCCGTTAGTTTATTTGAA 59.526 36.000 0.00 0.00 0.00 2.69
68 69 6.016192 TGTCCATGCCGTTAGTTTATTTGAAA 60.016 34.615 0.00 0.00 0.00 2.69
69 70 7.033185 GTCCATGCCGTTAGTTTATTTGAAAT 58.967 34.615 0.00 0.00 0.00 2.17
70 71 7.009174 GTCCATGCCGTTAGTTTATTTGAAATG 59.991 37.037 0.00 0.00 0.00 2.32
71 72 7.032580 CCATGCCGTTAGTTTATTTGAAATGA 58.967 34.615 0.00 0.00 0.00 2.57
72 73 7.009174 CCATGCCGTTAGTTTATTTGAAATGAC 59.991 37.037 0.00 0.00 0.00 3.06
73 74 6.971602 TGCCGTTAGTTTATTTGAAATGACA 58.028 32.000 0.00 0.00 0.00 3.58
74 75 7.598278 TGCCGTTAGTTTATTTGAAATGACAT 58.402 30.769 0.00 0.00 0.00 3.06
75 76 8.085296 TGCCGTTAGTTTATTTGAAATGACATT 58.915 29.630 0.00 0.00 0.00 2.71
76 77 8.583765 GCCGTTAGTTTATTTGAAATGACATTC 58.416 33.333 0.05 0.00 0.00 2.67
77 78 9.619316 CCGTTAGTTTATTTGAAATGACATTCA 57.381 29.630 0.05 0.00 37.53 2.57
89 90 9.642327 TTGAAATGACATTCATAACATTTGAGG 57.358 29.630 0.05 0.00 41.11 3.86
90 91 9.022884 TGAAATGACATTCATAACATTTGAGGA 57.977 29.630 0.05 0.00 41.11 3.71
92 93 9.811995 AAATGACATTCATAACATTTGAGGATG 57.188 29.630 0.05 0.00 40.07 3.51
93 94 7.943079 TGACATTCATAACATTTGAGGATGT 57.057 32.000 0.00 0.00 41.83 3.06
95 96 8.805175 TGACATTCATAACATTTGAGGATGTTT 58.195 29.630 8.35 0.00 45.38 2.83
96 97 9.643693 GACATTCATAACATTTGAGGATGTTTT 57.356 29.630 8.35 0.00 45.38 2.43
97 98 9.426837 ACATTCATAACATTTGAGGATGTTTTG 57.573 29.630 8.35 10.49 45.38 2.44
98 99 9.426837 CATTCATAACATTTGAGGATGTTTTGT 57.573 29.630 15.59 2.03 45.38 2.83
100 101 8.815141 TCATAACATTTGAGGATGTTTTGTTG 57.185 30.769 15.59 7.89 45.38 3.33
101 102 7.871973 TCATAACATTTGAGGATGTTTTGTTGG 59.128 33.333 15.59 0.00 45.38 3.77
102 103 5.612725 ACATTTGAGGATGTTTTGTTGGT 57.387 34.783 0.00 0.00 36.92 3.67
103 104 5.358922 ACATTTGAGGATGTTTTGTTGGTG 58.641 37.500 0.00 0.00 36.92 4.17
104 105 4.399004 TTTGAGGATGTTTTGTTGGTGG 57.601 40.909 0.00 0.00 0.00 4.61
105 106 3.304911 TGAGGATGTTTTGTTGGTGGA 57.695 42.857 0.00 0.00 0.00 4.02
106 107 3.636679 TGAGGATGTTTTGTTGGTGGAA 58.363 40.909 0.00 0.00 0.00 3.53
107 108 4.222336 TGAGGATGTTTTGTTGGTGGAAT 58.778 39.130 0.00 0.00 0.00 3.01
108 109 4.039004 TGAGGATGTTTTGTTGGTGGAATG 59.961 41.667 0.00 0.00 0.00 2.67
109 110 3.966665 AGGATGTTTTGTTGGTGGAATGT 59.033 39.130 0.00 0.00 0.00 2.71
110 111 4.408596 AGGATGTTTTGTTGGTGGAATGTT 59.591 37.500 0.00 0.00 0.00 2.71
111 112 4.511082 GGATGTTTTGTTGGTGGAATGTTG 59.489 41.667 0.00 0.00 0.00 3.33
112 113 3.866651 TGTTTTGTTGGTGGAATGTTGG 58.133 40.909 0.00 0.00 0.00 3.77
113 114 3.261897 TGTTTTGTTGGTGGAATGTTGGT 59.738 39.130 0.00 0.00 0.00 3.67
114 115 4.257731 GTTTTGTTGGTGGAATGTTGGTT 58.742 39.130 0.00 0.00 0.00 3.67
115 116 3.533606 TTGTTGGTGGAATGTTGGTTG 57.466 42.857 0.00 0.00 0.00 3.77
116 117 1.759445 TGTTGGTGGAATGTTGGTTGG 59.241 47.619 0.00 0.00 0.00 3.77
117 118 0.755686 TTGGTGGAATGTTGGTTGGC 59.244 50.000 0.00 0.00 0.00 4.52
118 119 1.118356 TGGTGGAATGTTGGTTGGCC 61.118 55.000 0.00 0.00 0.00 5.36
119 120 1.118356 GGTGGAATGTTGGTTGGCCA 61.118 55.000 0.00 0.00 44.38 5.36
120 121 0.033366 GTGGAATGTTGGTTGGCCAC 59.967 55.000 3.88 0.00 46.01 5.01
121 122 0.105760 TGGAATGTTGGTTGGCCACT 60.106 50.000 3.88 0.00 46.01 4.00
122 123 1.047801 GGAATGTTGGTTGGCCACTT 58.952 50.000 3.88 0.00 46.01 3.16
123 124 1.270252 GGAATGTTGGTTGGCCACTTG 60.270 52.381 3.88 0.00 46.01 3.16
124 125 0.758123 AATGTTGGTTGGCCACTTGG 59.242 50.000 3.88 0.00 46.01 3.61
125 126 0.398381 ATGTTGGTTGGCCACTTGGT 60.398 50.000 3.88 0.00 46.01 3.67
126 127 1.040339 TGTTGGTTGGCCACTTGGTC 61.040 55.000 3.88 0.00 46.01 4.02
127 128 1.826054 TTGGTTGGCCACTTGGTCG 60.826 57.895 3.88 0.00 46.01 4.79
128 129 2.983592 GGTTGGCCACTTGGTCGG 60.984 66.667 3.88 0.00 44.44 4.79
129 130 2.983592 GTTGGCCACTTGGTCGGG 60.984 66.667 3.88 0.00 44.44 5.14
130 131 4.966787 TTGGCCACTTGGTCGGGC 62.967 66.667 3.88 0.00 44.44 6.13
134 135 3.047877 CCACTTGGTCGGGCGAAC 61.048 66.667 0.00 0.00 0.00 3.95
135 136 3.047877 CACTTGGTCGGGCGAACC 61.048 66.667 0.00 0.25 0.00 3.62
136 137 3.552384 ACTTGGTCGGGCGAACCA 61.552 61.111 5.58 5.58 40.22 3.67
137 138 2.046314 CTTGGTCGGGCGAACCAT 60.046 61.111 10.03 0.00 40.22 3.55
138 139 2.046700 TTGGTCGGGCGAACCATC 60.047 61.111 10.03 0.00 40.22 3.51
139 140 3.615509 TTGGTCGGGCGAACCATCC 62.616 63.158 10.03 0.00 40.22 3.51
140 141 4.090588 GGTCGGGCGAACCATCCA 62.091 66.667 2.33 0.00 40.22 3.41
141 142 2.189521 GTCGGGCGAACCATCCAT 59.810 61.111 0.00 0.00 40.22 3.41
142 143 2.180204 GTCGGGCGAACCATCCATG 61.180 63.158 0.00 0.00 40.22 3.66
163 164 2.427095 GGTTGGATACCATGGAAACTGC 59.573 50.000 21.47 5.50 46.92 4.40
164 165 3.088532 GTTGGATACCATGGAAACTGCA 58.911 45.455 21.47 8.16 31.53 4.41
165 166 2.722094 TGGATACCATGGAAACTGCAC 58.278 47.619 21.47 0.54 0.00 4.57
166 167 2.308570 TGGATACCATGGAAACTGCACT 59.691 45.455 21.47 0.00 0.00 4.40
167 168 2.684881 GGATACCATGGAAACTGCACTG 59.315 50.000 21.47 0.00 0.00 3.66
168 169 2.198827 TACCATGGAAACTGCACTGG 57.801 50.000 21.47 0.00 0.00 4.00
169 170 0.478072 ACCATGGAAACTGCACTGGA 59.522 50.000 21.47 0.00 0.00 3.86
170 171 1.171308 CCATGGAAACTGCACTGGAG 58.829 55.000 5.56 0.00 0.00 3.86
171 172 0.524862 CATGGAAACTGCACTGGAGC 59.475 55.000 0.00 0.00 0.00 4.70
172 173 0.403271 ATGGAAACTGCACTGGAGCT 59.597 50.000 0.00 0.00 34.99 4.09
173 174 0.250467 TGGAAACTGCACTGGAGCTC 60.250 55.000 4.71 4.71 34.99 4.09
174 175 0.957888 GGAAACTGCACTGGAGCTCC 60.958 60.000 26.78 26.78 34.99 4.70
175 176 0.250467 GAAACTGCACTGGAGCTCCA 60.250 55.000 33.04 33.04 45.30 3.86
176 177 0.536006 AAACTGCACTGGAGCTCCAC 60.536 55.000 32.00 21.93 42.01 4.02
177 178 2.046507 CTGCACTGGAGCTCCACC 60.047 66.667 32.00 21.36 42.01 4.61
178 179 3.947132 CTGCACTGGAGCTCCACCG 62.947 68.421 32.00 24.32 42.01 4.94
180 181 4.767255 CACTGGAGCTCCACCGCC 62.767 72.222 32.00 5.52 42.01 6.13
182 183 4.154347 CTGGAGCTCCACCGCCTC 62.154 72.222 32.00 3.14 42.01 4.70
194 195 4.899239 CGCCTCCCTCGTGGCATC 62.899 72.222 0.00 0.00 46.97 3.91
195 196 3.785859 GCCTCCCTCGTGGCATCA 61.786 66.667 0.00 0.00 46.07 3.07
196 197 2.989639 CCTCCCTCGTGGCATCAA 59.010 61.111 0.00 0.00 0.00 2.57
197 198 1.153289 CCTCCCTCGTGGCATCAAG 60.153 63.158 0.00 0.00 0.00 3.02
198 199 1.153289 CTCCCTCGTGGCATCAAGG 60.153 63.158 0.00 0.00 0.00 3.61
199 200 2.825836 CCCTCGTGGCATCAAGGC 60.826 66.667 0.00 0.00 44.50 4.35
207 208 3.001514 GCATCAAGGCCAGGAGGA 58.998 61.111 5.01 0.00 36.89 3.71
208 209 1.304282 GCATCAAGGCCAGGAGGAA 59.696 57.895 5.01 0.00 36.89 3.36
209 210 0.323725 GCATCAAGGCCAGGAGGAAA 60.324 55.000 5.01 0.00 36.89 3.13
210 211 1.760192 CATCAAGGCCAGGAGGAAAG 58.240 55.000 5.01 0.00 36.89 2.62
211 212 1.005215 CATCAAGGCCAGGAGGAAAGT 59.995 52.381 5.01 0.00 36.89 2.66
212 213 2.038863 TCAAGGCCAGGAGGAAAGTA 57.961 50.000 5.01 0.00 36.89 2.24
213 214 2.562296 TCAAGGCCAGGAGGAAAGTAT 58.438 47.619 5.01 0.00 36.89 2.12
214 215 2.239654 TCAAGGCCAGGAGGAAAGTATG 59.760 50.000 5.01 0.00 36.89 2.39
215 216 1.216990 AGGCCAGGAGGAAAGTATGG 58.783 55.000 5.01 0.00 36.89 2.74
216 217 0.183731 GGCCAGGAGGAAAGTATGGG 59.816 60.000 0.00 0.00 36.89 4.00
217 218 0.466372 GCCAGGAGGAAAGTATGGGC 60.466 60.000 0.00 0.00 36.89 5.36
218 219 0.918983 CCAGGAGGAAAGTATGGGCA 59.081 55.000 0.00 0.00 36.89 5.36
219 220 1.496429 CCAGGAGGAAAGTATGGGCAT 59.504 52.381 0.00 0.00 36.89 4.40
220 221 2.711009 CCAGGAGGAAAGTATGGGCATA 59.289 50.000 0.00 0.00 36.89 3.14
221 222 3.244700 CCAGGAGGAAAGTATGGGCATAG 60.245 52.174 0.00 0.00 36.89 2.23
222 223 2.373502 AGGAGGAAAGTATGGGCATAGC 59.626 50.000 0.00 0.00 0.00 2.97
247 248 4.170062 CGCATGGCTTGAGCACGG 62.170 66.667 4.32 0.00 44.36 4.94
248 249 2.747460 GCATGGCTTGAGCACGGA 60.747 61.111 4.32 0.00 44.36 4.69
249 250 2.758089 GCATGGCTTGAGCACGGAG 61.758 63.158 4.32 0.00 44.36 4.63
250 251 2.437359 ATGGCTTGAGCACGGAGC 60.437 61.111 5.24 1.57 44.36 4.70
280 281 4.976224 GTGAAACTTAGGTGGTGTTTGT 57.024 40.909 0.00 0.00 34.55 2.83
281 282 5.319140 GTGAAACTTAGGTGGTGTTTGTT 57.681 39.130 0.00 0.00 34.55 2.83
282 283 5.716094 GTGAAACTTAGGTGGTGTTTGTTT 58.284 37.500 0.00 0.00 34.55 2.83
283 284 5.803461 GTGAAACTTAGGTGGTGTTTGTTTC 59.197 40.000 0.00 0.00 40.89 2.78
284 285 5.712917 TGAAACTTAGGTGGTGTTTGTTTCT 59.287 36.000 14.04 0.00 41.02 2.52
285 286 5.830000 AACTTAGGTGGTGTTTGTTTCTC 57.170 39.130 0.00 0.00 0.00 2.87
286 287 5.112129 ACTTAGGTGGTGTTTGTTTCTCT 57.888 39.130 0.00 0.00 0.00 3.10
287 288 6.243216 ACTTAGGTGGTGTTTGTTTCTCTA 57.757 37.500 0.00 0.00 0.00 2.43
288 289 6.289064 ACTTAGGTGGTGTTTGTTTCTCTAG 58.711 40.000 0.00 0.00 0.00 2.43
289 290 4.772886 AGGTGGTGTTTGTTTCTCTAGT 57.227 40.909 0.00 0.00 0.00 2.57
290 291 4.704965 AGGTGGTGTTTGTTTCTCTAGTC 58.295 43.478 0.00 0.00 0.00 2.59
291 292 4.409247 AGGTGGTGTTTGTTTCTCTAGTCT 59.591 41.667 0.00 0.00 0.00 3.24
292 293 5.104485 AGGTGGTGTTTGTTTCTCTAGTCTT 60.104 40.000 0.00 0.00 0.00 3.01
293 294 6.099269 AGGTGGTGTTTGTTTCTCTAGTCTTA 59.901 38.462 0.00 0.00 0.00 2.10
294 295 6.935208 GGTGGTGTTTGTTTCTCTAGTCTTAT 59.065 38.462 0.00 0.00 0.00 1.73
295 296 7.095187 GGTGGTGTTTGTTTCTCTAGTCTTATG 60.095 40.741 0.00 0.00 0.00 1.90
296 297 7.656137 GTGGTGTTTGTTTCTCTAGTCTTATGA 59.344 37.037 0.00 0.00 0.00 2.15
297 298 7.656137 TGGTGTTTGTTTCTCTAGTCTTATGAC 59.344 37.037 0.50 0.50 43.22 3.06
312 313 7.835634 GTCTTATGACTTTTTCTAGTCCCTG 57.164 40.000 1.60 0.00 43.11 4.45
313 314 7.612677 GTCTTATGACTTTTTCTAGTCCCTGA 58.387 38.462 1.60 0.00 43.11 3.86
314 315 7.762159 GTCTTATGACTTTTTCTAGTCCCTGAG 59.238 40.741 1.60 0.00 43.11 3.35
315 316 7.674348 TCTTATGACTTTTTCTAGTCCCTGAGA 59.326 37.037 0.00 0.00 43.11 3.27
316 317 5.470047 TGACTTTTTCTAGTCCCTGAGAC 57.530 43.478 0.00 0.00 43.11 3.36
329 330 6.451064 GTCCCTGAGACTTTTTGAAAAAGA 57.549 37.500 30.55 12.07 42.69 2.52
330 331 6.266323 GTCCCTGAGACTTTTTGAAAAAGAC 58.734 40.000 30.55 25.08 42.69 3.01
331 332 6.095580 GTCCCTGAGACTTTTTGAAAAAGACT 59.904 38.462 30.55 28.53 42.69 3.24
332 333 6.318900 TCCCTGAGACTTTTTGAAAAAGACTC 59.681 38.462 34.41 34.41 43.90 3.36
333 334 6.319911 CCCTGAGACTTTTTGAAAAAGACTCT 59.680 38.462 37.03 28.72 43.94 3.24
334 335 7.148000 CCCTGAGACTTTTTGAAAAAGACTCTT 60.148 37.037 37.03 20.40 43.94 2.85
335 336 8.893727 CCTGAGACTTTTTGAAAAAGACTCTTA 58.106 33.333 37.03 26.95 43.94 2.10
338 339 9.723447 GAGACTTTTTGAAAAAGACTCTTAAGG 57.277 33.333 34.08 13.40 41.98 2.69
339 340 9.462606 AGACTTTTTGAAAAAGACTCTTAAGGA 57.537 29.630 30.55 0.00 28.91 3.36
340 341 9.723447 GACTTTTTGAAAAAGACTCTTAAGGAG 57.277 33.333 30.55 6.52 46.87 3.69
341 342 8.687242 ACTTTTTGAAAAAGACTCTTAAGGAGG 58.313 33.333 30.55 6.26 45.83 4.30
342 343 8.589701 TTTTTGAAAAAGACTCTTAAGGAGGT 57.410 30.769 1.85 0.00 45.83 3.85
343 344 7.568199 TTTGAAAAAGACTCTTAAGGAGGTG 57.432 36.000 1.85 0.00 45.83 4.00
344 345 5.063880 TGAAAAAGACTCTTAAGGAGGTGC 58.936 41.667 1.85 0.00 45.83 5.01
345 346 4.984146 AAAAGACTCTTAAGGAGGTGCT 57.016 40.909 1.85 0.00 45.83 4.40
346 347 4.984146 AAAGACTCTTAAGGAGGTGCTT 57.016 40.909 1.85 2.98 45.83 3.91
347 348 4.545208 AAGACTCTTAAGGAGGTGCTTC 57.455 45.455 1.85 0.00 45.83 3.86
348 349 3.785364 AGACTCTTAAGGAGGTGCTTCT 58.215 45.455 1.85 0.00 45.83 2.85
349 350 4.936802 AGACTCTTAAGGAGGTGCTTCTA 58.063 43.478 1.85 0.00 45.83 2.10
350 351 5.334421 AGACTCTTAAGGAGGTGCTTCTAA 58.666 41.667 1.85 0.00 45.83 2.10
351 352 5.780793 AGACTCTTAAGGAGGTGCTTCTAAA 59.219 40.000 1.85 0.00 45.83 1.85
352 353 6.043854 ACTCTTAAGGAGGTGCTTCTAAAG 57.956 41.667 1.85 0.00 45.83 1.85
353 354 5.780793 ACTCTTAAGGAGGTGCTTCTAAAGA 59.219 40.000 1.85 0.00 45.83 2.52
354 355 6.038997 TCTTAAGGAGGTGCTTCTAAAGAC 57.961 41.667 1.85 0.00 0.00 3.01
355 356 5.780793 TCTTAAGGAGGTGCTTCTAAAGACT 59.219 40.000 1.85 0.00 0.00 3.24
356 357 4.984146 AAGGAGGTGCTTCTAAAGACTT 57.016 40.909 0.00 0.00 0.00 3.01
357 358 4.984146 AGGAGGTGCTTCTAAAGACTTT 57.016 40.909 5.62 5.62 0.00 2.66
358 359 5.311844 AGGAGGTGCTTCTAAAGACTTTT 57.688 39.130 5.61 0.00 0.00 2.27
359 360 6.435292 AGGAGGTGCTTCTAAAGACTTTTA 57.565 37.500 5.61 0.00 0.00 1.52
360 361 6.468543 AGGAGGTGCTTCTAAAGACTTTTAG 58.531 40.000 5.61 3.33 44.64 1.85
361 362 5.122554 GGAGGTGCTTCTAAAGACTTTTAGC 59.877 44.000 5.61 12.66 43.52 3.09
362 363 5.621193 AGGTGCTTCTAAAGACTTTTAGCA 58.379 37.500 19.63 19.63 43.52 3.49
363 364 6.062095 AGGTGCTTCTAAAGACTTTTAGCAA 58.938 36.000 22.72 11.82 43.52 3.91
364 365 6.546034 AGGTGCTTCTAAAGACTTTTAGCAAA 59.454 34.615 22.72 8.44 43.52 3.68
365 366 7.068226 AGGTGCTTCTAAAGACTTTTAGCAAAA 59.932 33.333 22.72 7.95 43.52 2.44
366 367 7.704899 GGTGCTTCTAAAGACTTTTAGCAAAAA 59.295 33.333 22.72 7.71 43.52 1.94
394 395 3.328535 AAAAGTCCCATCCTGTTTGGT 57.671 42.857 0.00 0.00 37.07 3.67
395 396 3.328535 AAAGTCCCATCCTGTTTGGTT 57.671 42.857 0.00 0.00 37.07 3.67
396 397 3.328535 AAGTCCCATCCTGTTTGGTTT 57.671 42.857 0.00 0.00 37.07 3.27
397 398 2.597455 AGTCCCATCCTGTTTGGTTTG 58.403 47.619 0.00 0.00 37.07 2.93
398 399 1.000843 GTCCCATCCTGTTTGGTTTGC 59.999 52.381 0.00 0.00 37.07 3.68
399 400 1.133199 TCCCATCCTGTTTGGTTTGCT 60.133 47.619 0.00 0.00 37.07 3.91
400 401 2.109128 TCCCATCCTGTTTGGTTTGCTA 59.891 45.455 0.00 0.00 37.07 3.49
401 402 2.493278 CCCATCCTGTTTGGTTTGCTAG 59.507 50.000 0.00 0.00 37.07 3.42
402 403 2.493278 CCATCCTGTTTGGTTTGCTAGG 59.507 50.000 0.00 0.00 37.07 3.02
403 404 2.286365 TCCTGTTTGGTTTGCTAGGG 57.714 50.000 0.00 0.00 37.07 3.53
404 405 1.777878 TCCTGTTTGGTTTGCTAGGGA 59.222 47.619 0.00 0.00 37.07 4.20
405 406 1.886542 CCTGTTTGGTTTGCTAGGGAC 59.113 52.381 0.00 0.00 0.00 4.46
406 407 2.489073 CCTGTTTGGTTTGCTAGGGACT 60.489 50.000 0.00 0.00 46.37 3.85
407 408 3.222603 CTGTTTGGTTTGCTAGGGACTT 58.777 45.455 0.00 0.00 41.75 3.01
408 409 3.636764 CTGTTTGGTTTGCTAGGGACTTT 59.363 43.478 0.00 0.00 41.75 2.66
409 410 4.027437 TGTTTGGTTTGCTAGGGACTTTT 58.973 39.130 0.00 0.00 41.75 2.27
410 411 4.468153 TGTTTGGTTTGCTAGGGACTTTTT 59.532 37.500 0.00 0.00 41.75 1.94
411 412 4.929819 TTGGTTTGCTAGGGACTTTTTC 57.070 40.909 0.00 0.00 41.75 2.29
412 413 4.178956 TGGTTTGCTAGGGACTTTTTCT 57.821 40.909 0.00 0.00 41.75 2.52
413 414 5.313280 TGGTTTGCTAGGGACTTTTTCTA 57.687 39.130 0.00 0.00 41.75 2.10
414 415 5.313712 TGGTTTGCTAGGGACTTTTTCTAG 58.686 41.667 0.00 0.00 41.75 2.43
415 416 5.163131 TGGTTTGCTAGGGACTTTTTCTAGT 60.163 40.000 0.00 0.00 41.75 2.57
416 417 5.411977 GGTTTGCTAGGGACTTTTTCTAGTC 59.588 44.000 0.00 0.00 43.05 2.59
425 426 5.479124 GACTTTTTCTAGTCCCTACACCA 57.521 43.478 0.00 0.00 38.88 4.17
426 427 5.861727 GACTTTTTCTAGTCCCTACACCAA 58.138 41.667 0.00 0.00 38.88 3.67
427 428 6.256643 ACTTTTTCTAGTCCCTACACCAAA 57.743 37.500 0.00 0.00 0.00 3.28
428 429 6.665695 ACTTTTTCTAGTCCCTACACCAAAA 58.334 36.000 0.00 0.00 0.00 2.44
429 430 7.120716 ACTTTTTCTAGTCCCTACACCAAAAA 58.879 34.615 0.00 0.00 0.00 1.94
430 431 7.284716 ACTTTTTCTAGTCCCTACACCAAAAAG 59.715 37.037 13.11 13.11 39.45 2.27
431 432 5.899631 TTCTAGTCCCTACACCAAAAAGT 57.100 39.130 0.00 0.00 0.00 2.66
432 433 5.479124 TCTAGTCCCTACACCAAAAAGTC 57.521 43.478 0.00 0.00 0.00 3.01
433 434 3.503800 AGTCCCTACACCAAAAAGTCC 57.496 47.619 0.00 0.00 0.00 3.85
434 435 2.107726 AGTCCCTACACCAAAAAGTCCC 59.892 50.000 0.00 0.00 0.00 4.46
435 436 2.107726 GTCCCTACACCAAAAAGTCCCT 59.892 50.000 0.00 0.00 0.00 4.20
436 437 2.107552 TCCCTACACCAAAAAGTCCCTG 59.892 50.000 0.00 0.00 0.00 4.45
437 438 2.107552 CCCTACACCAAAAAGTCCCTGA 59.892 50.000 0.00 0.00 0.00 3.86
438 439 3.435890 CCCTACACCAAAAAGTCCCTGAA 60.436 47.826 0.00 0.00 0.00 3.02
439 440 4.211920 CCTACACCAAAAAGTCCCTGAAA 58.788 43.478 0.00 0.00 0.00 2.69
440 441 4.647399 CCTACACCAAAAAGTCCCTGAAAA 59.353 41.667 0.00 0.00 0.00 2.29
441 442 4.465632 ACACCAAAAAGTCCCTGAAAAC 57.534 40.909 0.00 0.00 0.00 2.43
442 443 3.835395 ACACCAAAAAGTCCCTGAAAACA 59.165 39.130 0.00 0.00 0.00 2.83
443 444 4.284746 ACACCAAAAAGTCCCTGAAAACAA 59.715 37.500 0.00 0.00 0.00 2.83
444 445 5.221742 ACACCAAAAAGTCCCTGAAAACAAA 60.222 36.000 0.00 0.00 0.00 2.83
445 446 5.121611 CACCAAAAAGTCCCTGAAAACAAAC 59.878 40.000 0.00 0.00 0.00 2.93
446 447 5.221742 ACCAAAAAGTCCCTGAAAACAAACA 60.222 36.000 0.00 0.00 0.00 2.83
447 448 5.121611 CCAAAAAGTCCCTGAAAACAAACAC 59.878 40.000 0.00 0.00 0.00 3.32
448 449 4.465632 AAAGTCCCTGAAAACAAACACC 57.534 40.909 0.00 0.00 0.00 4.16
449 450 2.384828 AGTCCCTGAAAACAAACACCC 58.615 47.619 0.00 0.00 0.00 4.61
450 451 1.411246 GTCCCTGAAAACAAACACCCC 59.589 52.381 0.00 0.00 0.00 4.95
496 497 9.672673 ACATCAGGTATTGATAATATTAGCCAC 57.327 33.333 8.20 4.03 44.76 5.01
503 504 5.538849 TGATAATATTAGCCACGACACCA 57.461 39.130 8.20 0.00 0.00 4.17
577 578 4.468095 CGGAGCGGATTAATTAACCAAG 57.532 45.455 0.00 0.00 0.00 3.61
613 625 5.800438 GTCGCTCACCTGGATTTTTAATTTC 59.200 40.000 0.00 0.00 0.00 2.17
614 626 5.710099 TCGCTCACCTGGATTTTTAATTTCT 59.290 36.000 0.00 0.00 0.00 2.52
821 849 1.065851 ACCCAAACCTAAAACGCGTTG 59.934 47.619 27.34 15.43 0.00 4.10
823 851 1.534175 CCAAACCTAAAACGCGTTGCA 60.534 47.619 27.34 15.16 0.00 4.08
913 941 4.407945 GGTCCGGCCTATATATACATGGTT 59.592 45.833 0.00 0.00 0.00 3.67
962 1003 3.702048 GCACCTCGCCCTACACCA 61.702 66.667 0.00 0.00 32.94 4.17
978 1019 1.605710 CACCACCTGCAAAGACTTCTG 59.394 52.381 0.00 0.00 0.00 3.02
993 1034 1.472878 CTTCTGTCTTGGTCCGATCGA 59.527 52.381 18.66 0.00 0.00 3.59
1470 1519 2.050269 CCGGTTCTAGGCGATGGAT 58.950 57.895 0.00 0.00 0.00 3.41
1477 1526 1.202842 TCTAGGCGATGGATGACGGTA 60.203 52.381 0.00 0.00 0.00 4.02
1483 1532 2.610479 GCGATGGATGACGGTATGATGT 60.610 50.000 0.00 0.00 0.00 3.06
1524 1573 4.086457 AGTTTGTTCCTTGTGTTGACCTT 58.914 39.130 0.00 0.00 0.00 3.50
1612 1661 2.034179 GGGTGTTTGAGTTGTGTAAGGC 59.966 50.000 0.00 0.00 0.00 4.35
1683 3999 9.809096 TTTCAAAGTTTTGCATGTTTATGAGTA 57.191 25.926 0.00 0.00 38.05 2.59
1715 4031 2.675844 TGTTTTCACTGAACTCCACGTG 59.324 45.455 9.08 9.08 0.00 4.49
1720 4036 5.456548 TTCACTGAACTCCACGTGTATTA 57.543 39.130 15.65 0.00 0.00 0.98
1742 4058 0.741574 TTGCACGTCGTTTGTCACCT 60.742 50.000 0.00 0.00 0.00 4.00
1743 4059 1.275657 GCACGTCGTTTGTCACCTG 59.724 57.895 0.00 0.00 0.00 4.00
1757 4073 7.165812 CGTTTGTCACCTGAAAATAAACTGAAG 59.834 37.037 0.00 0.00 0.00 3.02
1785 4101 9.401058 CAGTCAGTTAGATTCTAAATCCCATTT 57.599 33.333 7.70 0.00 36.29 2.32
1850 4172 9.645059 CATACATAGGAGTAGTATGTTTGGATG 57.355 37.037 1.34 0.00 40.72 3.51
1851 4173 6.525629 ACATAGGAGTAGTATGTTTGGATGC 58.474 40.000 0.00 0.00 37.77 3.91
1894 4216 6.807789 AGTTAATCATTCTACTTCCTCCGAC 58.192 40.000 0.00 0.00 0.00 4.79
1903 4228 3.345508 ACTTCCTCCGACCCAATTAAC 57.654 47.619 0.00 0.00 0.00 2.01
1923 4248 9.439500 AATTAACTGACGCACCTTTAGTATAAA 57.561 29.630 0.00 0.00 0.00 1.40
1924 4249 8.830201 TTAACTGACGCACCTTTAGTATAAAA 57.170 30.769 0.00 0.00 0.00 1.52
1925 4250 6.716898 ACTGACGCACCTTTAGTATAAAAC 57.283 37.500 0.00 0.00 0.00 2.43
1926 4251 6.461640 ACTGACGCACCTTTAGTATAAAACT 58.538 36.000 0.00 0.00 42.62 2.66
1928 4253 5.121142 TGACGCACCTTTAGTATAAAACTGC 59.879 40.000 0.00 0.00 39.39 4.40
1932 4257 6.314784 GCACCTTTAGTATAAAACTGCAGTG 58.685 40.000 22.49 5.23 39.39 3.66
1966 4291 9.469807 TTGTGCTTTCAATTTAATATCGTTGTT 57.530 25.926 0.00 0.00 0.00 2.83
2018 4343 2.715737 TTTGGCTAATGTTGTTCGGC 57.284 45.000 0.00 0.00 0.00 5.54
2019 4344 0.885196 TTGGCTAATGTTGTTCGGCC 59.115 50.000 0.00 0.00 39.93 6.13
2020 4345 0.250945 TGGCTAATGTTGTTCGGCCA 60.251 50.000 2.24 0.00 45.81 5.36
2045 4370 6.890268 AGGGATCCAACTGTAAAAGTAAATCC 59.110 38.462 15.23 0.00 38.56 3.01
2060 4385 6.642707 AGTAAATCCACGTCCAAATTTTCA 57.357 33.333 0.00 0.00 0.00 2.69
2114 4439 5.049954 TGTGTTCACGCTATAAAGTTTCCAC 60.050 40.000 0.00 0.00 0.00 4.02
2188 4516 3.315470 AGCTTATTGCAGATCGACTCGTA 59.685 43.478 0.00 0.00 45.94 3.43
2219 4547 6.932960 GGGTCCCATGTAATTGTATGTAGTAC 59.067 42.308 1.78 0.00 0.00 2.73
2258 4586 6.839124 TCTTGTGCTCATATTTGTGGAATT 57.161 33.333 0.00 0.00 0.00 2.17
2266 4594 7.488792 TGCTCATATTTGTGGAATTCAATTTCG 59.511 33.333 7.93 0.00 0.00 3.46
2272 4600 5.371115 TGTGGAATTCAATTTCGGTTCTC 57.629 39.130 7.93 0.00 0.00 2.87
2299 4627 0.036388 GGACTCAATTCGTGGGAGCA 60.036 55.000 0.00 0.00 31.88 4.26
2302 4630 0.745845 CTCAATTCGTGGGAGCAGGG 60.746 60.000 0.00 0.00 0.00 4.45
2439 4769 7.358066 TCTTTAGAAATACGGTATAGACGCAG 58.642 38.462 0.22 0.00 34.00 5.18
2456 4786 1.605710 GCAGACACTCACAACAAGCAT 59.394 47.619 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.008266 CGAATGACACATGCAACTAATTTAACC 59.992 37.037 0.00 0.00 0.00 2.85
1 2 7.537306 ACGAATGACACATGCAACTAATTTAAC 59.463 33.333 0.00 0.00 0.00 2.01
2 3 7.589395 ACGAATGACACATGCAACTAATTTAA 58.411 30.769 0.00 0.00 0.00 1.52
3 4 7.139896 ACGAATGACACATGCAACTAATTTA 57.860 32.000 0.00 0.00 0.00 1.40
4 5 6.012658 ACGAATGACACATGCAACTAATTT 57.987 33.333 0.00 0.00 0.00 1.82
5 6 5.627499 ACGAATGACACATGCAACTAATT 57.373 34.783 0.00 0.00 0.00 1.40
6 7 5.627499 AACGAATGACACATGCAACTAAT 57.373 34.783 0.00 0.00 0.00 1.73
7 8 4.376920 CGAACGAATGACACATGCAACTAA 60.377 41.667 0.00 0.00 0.00 2.24
8 9 3.122780 CGAACGAATGACACATGCAACTA 59.877 43.478 0.00 0.00 0.00 2.24
9 10 2.096268 CGAACGAATGACACATGCAACT 60.096 45.455 0.00 0.00 0.00 3.16
10 11 2.096466 TCGAACGAATGACACATGCAAC 60.096 45.455 0.00 0.00 0.00 4.17
11 12 2.139118 TCGAACGAATGACACATGCAA 58.861 42.857 0.00 0.00 0.00 4.08
12 13 1.789506 TCGAACGAATGACACATGCA 58.210 45.000 0.00 0.00 0.00 3.96
13 14 3.389687 AATCGAACGAATGACACATGC 57.610 42.857 0.12 0.00 0.00 4.06
14 15 4.268644 AGCTAATCGAACGAATGACACATG 59.731 41.667 0.12 0.00 0.00 3.21
15 16 4.268644 CAGCTAATCGAACGAATGACACAT 59.731 41.667 0.12 0.00 0.00 3.21
16 17 3.612423 CAGCTAATCGAACGAATGACACA 59.388 43.478 0.12 0.00 0.00 3.72
17 18 3.542291 GCAGCTAATCGAACGAATGACAC 60.542 47.826 0.12 0.00 0.00 3.67
18 19 2.603110 GCAGCTAATCGAACGAATGACA 59.397 45.455 0.12 0.00 0.00 3.58
19 20 2.603110 TGCAGCTAATCGAACGAATGAC 59.397 45.455 0.12 0.00 0.00 3.06
20 21 2.887337 TGCAGCTAATCGAACGAATGA 58.113 42.857 0.12 0.00 0.00 2.57
21 22 3.867055 ATGCAGCTAATCGAACGAATG 57.133 42.857 0.12 0.00 0.00 2.67
22 23 4.991056 ACATATGCAGCTAATCGAACGAAT 59.009 37.500 1.58 0.00 0.00 3.34
23 24 4.368315 ACATATGCAGCTAATCGAACGAA 58.632 39.130 1.58 0.00 0.00 3.85
24 25 3.977427 ACATATGCAGCTAATCGAACGA 58.023 40.909 1.58 0.00 0.00 3.85
25 26 3.121944 GGACATATGCAGCTAATCGAACG 59.878 47.826 1.58 0.00 0.00 3.95
26 27 4.058124 TGGACATATGCAGCTAATCGAAC 58.942 43.478 1.58 0.00 0.00 3.95
27 28 4.335400 TGGACATATGCAGCTAATCGAA 57.665 40.909 1.58 0.00 0.00 3.71
28 29 4.248058 CATGGACATATGCAGCTAATCGA 58.752 43.478 1.58 0.00 0.00 3.59
29 30 4.595198 CATGGACATATGCAGCTAATCG 57.405 45.455 1.58 0.00 0.00 3.34
39 40 6.801539 ATAAACTAACGGCATGGACATATG 57.198 37.500 0.00 0.00 0.00 1.78
40 41 7.500892 TCAAATAAACTAACGGCATGGACATAT 59.499 33.333 0.00 0.00 0.00 1.78
41 42 6.824196 TCAAATAAACTAACGGCATGGACATA 59.176 34.615 0.00 0.00 0.00 2.29
42 43 5.650266 TCAAATAAACTAACGGCATGGACAT 59.350 36.000 0.00 0.00 0.00 3.06
43 44 5.004448 TCAAATAAACTAACGGCATGGACA 58.996 37.500 0.00 0.00 0.00 4.02
44 45 5.554822 TCAAATAAACTAACGGCATGGAC 57.445 39.130 0.00 0.00 0.00 4.02
45 46 6.576662 TTTCAAATAAACTAACGGCATGGA 57.423 33.333 0.00 0.00 0.00 3.41
46 47 7.009174 GTCATTTCAAATAAACTAACGGCATGG 59.991 37.037 0.00 0.00 0.00 3.66
47 48 7.540400 TGTCATTTCAAATAAACTAACGGCATG 59.460 33.333 0.00 0.00 0.00 4.06
48 49 7.598278 TGTCATTTCAAATAAACTAACGGCAT 58.402 30.769 0.00 0.00 0.00 4.40
49 50 6.971602 TGTCATTTCAAATAAACTAACGGCA 58.028 32.000 0.00 0.00 0.00 5.69
50 51 8.460831 AATGTCATTTCAAATAAACTAACGGC 57.539 30.769 0.00 0.00 0.00 5.68
51 52 9.619316 TGAATGTCATTTCAAATAAACTAACGG 57.381 29.630 0.00 0.00 32.82 4.44
63 64 9.642327 CCTCAAATGTTATGAATGTCATTTCAA 57.358 29.630 0.00 0.00 38.98 2.69
64 65 9.022884 TCCTCAAATGTTATGAATGTCATTTCA 57.977 29.630 0.00 0.38 38.26 2.69
66 67 9.811995 CATCCTCAAATGTTATGAATGTCATTT 57.188 29.630 0.00 0.00 38.26 2.32
67 68 8.974238 ACATCCTCAAATGTTATGAATGTCATT 58.026 29.630 0.00 0.00 36.47 2.57
68 69 8.529424 ACATCCTCAAATGTTATGAATGTCAT 57.471 30.769 0.00 0.00 36.47 3.06
69 70 7.943079 ACATCCTCAAATGTTATGAATGTCA 57.057 32.000 0.00 0.00 36.47 3.58
70 71 9.643693 AAAACATCCTCAAATGTTATGAATGTC 57.356 29.630 2.94 0.00 46.49 3.06
71 72 9.426837 CAAAACATCCTCAAATGTTATGAATGT 57.573 29.630 2.94 0.00 46.49 2.71
72 73 9.426837 ACAAAACATCCTCAAATGTTATGAATG 57.573 29.630 2.94 2.03 46.49 2.67
74 75 9.258826 CAACAAAACATCCTCAAATGTTATGAA 57.741 29.630 2.94 0.00 46.49 2.57
75 76 7.871973 CCAACAAAACATCCTCAAATGTTATGA 59.128 33.333 2.94 0.00 46.49 2.15
76 77 7.656948 ACCAACAAAACATCCTCAAATGTTATG 59.343 33.333 2.94 1.90 46.49 1.90
77 78 7.656948 CACCAACAAAACATCCTCAAATGTTAT 59.343 33.333 2.94 0.00 46.49 1.89
78 79 6.983307 CACCAACAAAACATCCTCAAATGTTA 59.017 34.615 2.94 0.00 46.49 2.41
80 81 5.358922 CACCAACAAAACATCCTCAAATGT 58.641 37.500 0.00 0.00 41.60 2.71
81 82 4.751098 CCACCAACAAAACATCCTCAAATG 59.249 41.667 0.00 0.00 0.00 2.32
82 83 4.653341 TCCACCAACAAAACATCCTCAAAT 59.347 37.500 0.00 0.00 0.00 2.32
83 84 4.026744 TCCACCAACAAAACATCCTCAAA 58.973 39.130 0.00 0.00 0.00 2.69
84 85 3.636679 TCCACCAACAAAACATCCTCAA 58.363 40.909 0.00 0.00 0.00 3.02
85 86 3.304911 TCCACCAACAAAACATCCTCA 57.695 42.857 0.00 0.00 0.00 3.86
86 87 4.039124 ACATTCCACCAACAAAACATCCTC 59.961 41.667 0.00 0.00 0.00 3.71
87 88 3.966665 ACATTCCACCAACAAAACATCCT 59.033 39.130 0.00 0.00 0.00 3.24
88 89 4.335400 ACATTCCACCAACAAAACATCC 57.665 40.909 0.00 0.00 0.00 3.51
89 90 4.511082 CCAACATTCCACCAACAAAACATC 59.489 41.667 0.00 0.00 0.00 3.06
90 91 4.080638 ACCAACATTCCACCAACAAAACAT 60.081 37.500 0.00 0.00 0.00 2.71
91 92 3.261897 ACCAACATTCCACCAACAAAACA 59.738 39.130 0.00 0.00 0.00 2.83
92 93 3.867857 ACCAACATTCCACCAACAAAAC 58.132 40.909 0.00 0.00 0.00 2.43
93 94 4.256920 CAACCAACATTCCACCAACAAAA 58.743 39.130 0.00 0.00 0.00 2.44
94 95 3.369892 CCAACCAACATTCCACCAACAAA 60.370 43.478 0.00 0.00 0.00 2.83
95 96 2.169352 CCAACCAACATTCCACCAACAA 59.831 45.455 0.00 0.00 0.00 2.83
96 97 1.759445 CCAACCAACATTCCACCAACA 59.241 47.619 0.00 0.00 0.00 3.33
97 98 1.540146 GCCAACCAACATTCCACCAAC 60.540 52.381 0.00 0.00 0.00 3.77
98 99 0.755686 GCCAACCAACATTCCACCAA 59.244 50.000 0.00 0.00 0.00 3.67
99 100 1.118356 GGCCAACCAACATTCCACCA 61.118 55.000 0.00 0.00 35.26 4.17
100 101 1.118356 TGGCCAACCAACATTCCACC 61.118 55.000 0.61 0.00 45.37 4.61
101 102 2.435418 TGGCCAACCAACATTCCAC 58.565 52.632 0.61 0.00 45.37 4.02
110 111 2.203280 CGACCAAGTGGCCAACCA 60.203 61.111 7.24 0.00 46.51 3.67
111 112 2.983592 CCGACCAAGTGGCCAACC 60.984 66.667 7.24 0.00 39.32 3.77
112 113 2.983592 CCCGACCAAGTGGCCAAC 60.984 66.667 7.24 1.26 39.32 3.77
113 114 4.966787 GCCCGACCAAGTGGCCAA 62.967 66.667 7.24 0.00 39.30 4.52
117 118 3.047877 GTTCGCCCGACCAAGTGG 61.048 66.667 0.00 0.00 42.17 4.00
118 119 3.047877 GGTTCGCCCGACCAAGTG 61.048 66.667 0.00 0.00 0.00 3.16
119 120 2.798148 GATGGTTCGCCCGACCAAGT 62.798 60.000 13.18 2.30 37.07 3.16
120 121 2.046314 ATGGTTCGCCCGACCAAG 60.046 61.111 13.18 0.00 37.07 3.61
121 122 2.046700 GATGGTTCGCCCGACCAA 60.047 61.111 13.18 0.00 37.07 3.67
122 123 4.090588 GGATGGTTCGCCCGACCA 62.091 66.667 12.09 12.09 37.99 4.02
123 124 3.400599 ATGGATGGTTCGCCCGACC 62.401 63.158 0.00 0.00 36.08 4.79
124 125 2.180204 CATGGATGGTTCGCCCGAC 61.180 63.158 0.00 0.00 36.08 4.79
125 126 2.189257 CATGGATGGTTCGCCCGA 59.811 61.111 0.00 0.00 36.08 5.14
126 127 2.901840 CCATGGATGGTTCGCCCG 60.902 66.667 5.56 0.00 43.05 6.13
143 144 3.088532 TGCAGTTTCCATGGTATCCAAC 58.911 45.455 12.58 8.27 36.95 3.77
144 145 3.088532 GTGCAGTTTCCATGGTATCCAA 58.911 45.455 12.58 0.00 36.95 3.53
145 146 2.308570 AGTGCAGTTTCCATGGTATCCA 59.691 45.455 12.58 0.20 38.19 3.41
146 147 2.684881 CAGTGCAGTTTCCATGGTATCC 59.315 50.000 12.58 0.00 0.00 2.59
147 148 2.684881 CCAGTGCAGTTTCCATGGTATC 59.315 50.000 12.58 0.99 0.00 2.24
148 149 2.308570 TCCAGTGCAGTTTCCATGGTAT 59.691 45.455 12.58 0.00 0.00 2.73
149 150 1.702401 TCCAGTGCAGTTTCCATGGTA 59.298 47.619 12.58 0.00 0.00 3.25
150 151 0.478072 TCCAGTGCAGTTTCCATGGT 59.522 50.000 12.58 0.00 0.00 3.55
151 152 1.171308 CTCCAGTGCAGTTTCCATGG 58.829 55.000 4.97 4.97 0.00 3.66
152 153 0.524862 GCTCCAGTGCAGTTTCCATG 59.475 55.000 0.00 0.00 0.00 3.66
153 154 0.403271 AGCTCCAGTGCAGTTTCCAT 59.597 50.000 0.00 0.00 34.99 3.41
154 155 0.250467 GAGCTCCAGTGCAGTTTCCA 60.250 55.000 0.87 0.00 34.99 3.53
155 156 0.957888 GGAGCTCCAGTGCAGTTTCC 60.958 60.000 28.43 0.00 35.64 3.13
156 157 0.250467 TGGAGCTCCAGTGCAGTTTC 60.250 55.000 32.00 0.96 42.01 2.78
157 158 1.839191 TGGAGCTCCAGTGCAGTTT 59.161 52.632 32.00 0.00 42.01 2.66
158 159 3.567308 TGGAGCTCCAGTGCAGTT 58.433 55.556 32.00 0.00 42.01 3.16
179 180 1.153289 CTTGATGCCACGAGGGAGG 60.153 63.158 0.00 0.00 39.29 4.30
180 181 1.153289 CCTTGATGCCACGAGGGAG 60.153 63.158 0.00 0.00 39.29 4.30
181 182 2.989639 CCTTGATGCCACGAGGGA 59.010 61.111 0.00 0.00 40.01 4.20
182 183 2.825836 GCCTTGATGCCACGAGGG 60.826 66.667 13.23 0.00 40.70 4.30
190 191 0.323725 TTTCCTCCTGGCCTTGATGC 60.324 55.000 3.32 0.00 0.00 3.91
191 192 1.005215 ACTTTCCTCCTGGCCTTGATG 59.995 52.381 3.32 0.00 0.00 3.07
192 193 1.376649 ACTTTCCTCCTGGCCTTGAT 58.623 50.000 3.32 0.00 0.00 2.57
193 194 2.038863 TACTTTCCTCCTGGCCTTGA 57.961 50.000 3.32 0.00 0.00 3.02
194 195 2.648059 CATACTTTCCTCCTGGCCTTG 58.352 52.381 3.32 0.00 0.00 3.61
195 196 1.566231 CCATACTTTCCTCCTGGCCTT 59.434 52.381 3.32 0.00 0.00 4.35
196 197 1.216990 CCATACTTTCCTCCTGGCCT 58.783 55.000 3.32 0.00 0.00 5.19
197 198 0.183731 CCCATACTTTCCTCCTGGCC 59.816 60.000 0.00 0.00 0.00 5.36
198 199 0.466372 GCCCATACTTTCCTCCTGGC 60.466 60.000 0.00 0.00 0.00 4.85
199 200 0.918983 TGCCCATACTTTCCTCCTGG 59.081 55.000 0.00 0.00 0.00 4.45
200 201 3.808618 GCTATGCCCATACTTTCCTCCTG 60.809 52.174 0.00 0.00 0.00 3.86
201 202 2.373502 GCTATGCCCATACTTTCCTCCT 59.626 50.000 0.00 0.00 0.00 3.69
202 203 2.553247 GGCTATGCCCATACTTTCCTCC 60.553 54.545 0.00 0.00 44.06 4.30
203 204 2.784347 GGCTATGCCCATACTTTCCTC 58.216 52.381 0.00 0.00 44.06 3.71
204 205 2.959465 GGCTATGCCCATACTTTCCT 57.041 50.000 0.00 0.00 44.06 3.36
229 230 4.824166 CGTGCTCAAGCCATGCGC 62.824 66.667 0.00 0.00 40.23 6.09
230 231 4.170062 CCGTGCTCAAGCCATGCG 62.170 66.667 0.00 0.00 41.18 4.73
231 232 2.747460 TCCGTGCTCAAGCCATGC 60.747 61.111 0.00 0.00 41.18 4.06
232 233 2.758089 GCTCCGTGCTCAAGCCATG 61.758 63.158 0.00 0.00 41.18 3.66
233 234 2.437359 GCTCCGTGCTCAAGCCAT 60.437 61.111 0.00 0.00 41.18 4.40
235 236 4.742201 TCGCTCCGTGCTCAAGCC 62.742 66.667 0.00 0.00 41.18 4.35
236 237 2.734673 CTTCGCTCCGTGCTCAAGC 61.735 63.158 0.00 0.00 40.11 4.01
237 238 2.734673 GCTTCGCTCCGTGCTCAAG 61.735 63.158 0.00 0.00 40.11 3.02
238 239 2.738521 GCTTCGCTCCGTGCTCAA 60.739 61.111 0.00 0.00 40.11 3.02
239 240 4.742201 GGCTTCGCTCCGTGCTCA 62.742 66.667 0.00 0.00 40.11 4.26
243 244 4.379243 ACTGGGCTTCGCTCCGTG 62.379 66.667 0.00 0.00 0.00 4.94
244 245 4.379243 CACTGGGCTTCGCTCCGT 62.379 66.667 0.00 0.00 0.00 4.69
245 246 3.589654 TTCACTGGGCTTCGCTCCG 62.590 63.158 0.00 0.00 0.00 4.63
246 247 1.302511 TTTCACTGGGCTTCGCTCC 60.303 57.895 0.00 0.00 0.00 4.70
247 248 0.603975 AGTTTCACTGGGCTTCGCTC 60.604 55.000 0.00 0.00 0.00 5.03
248 249 0.179018 AAGTTTCACTGGGCTTCGCT 60.179 50.000 0.00 0.00 0.00 4.93
249 250 1.464997 CTAAGTTTCACTGGGCTTCGC 59.535 52.381 0.00 0.00 0.00 4.70
250 251 2.076863 CCTAAGTTTCACTGGGCTTCG 58.923 52.381 0.00 0.00 0.00 3.79
251 252 2.814336 CACCTAAGTTTCACTGGGCTTC 59.186 50.000 0.00 0.00 0.00 3.86
252 253 2.489073 CCACCTAAGTTTCACTGGGCTT 60.489 50.000 0.00 0.00 0.00 4.35
253 254 1.073923 CCACCTAAGTTTCACTGGGCT 59.926 52.381 0.00 0.00 0.00 5.19
254 255 1.202891 ACCACCTAAGTTTCACTGGGC 60.203 52.381 0.00 0.00 0.00 5.36
255 256 2.158667 ACACCACCTAAGTTTCACTGGG 60.159 50.000 0.00 0.00 0.00 4.45
256 257 3.208747 ACACCACCTAAGTTTCACTGG 57.791 47.619 0.00 0.00 0.00 4.00
257 258 4.398044 ACAAACACCACCTAAGTTTCACTG 59.602 41.667 0.00 0.00 33.54 3.66
258 259 4.595986 ACAAACACCACCTAAGTTTCACT 58.404 39.130 0.00 0.00 33.54 3.41
259 260 4.976224 ACAAACACCACCTAAGTTTCAC 57.024 40.909 0.00 0.00 33.54 3.18
260 261 5.712917 AGAAACAAACACCACCTAAGTTTCA 59.287 36.000 14.92 0.00 43.30 2.69
261 262 6.095021 AGAGAAACAAACACCACCTAAGTTTC 59.905 38.462 0.00 0.00 41.99 2.78
262 263 5.949952 AGAGAAACAAACACCACCTAAGTTT 59.050 36.000 0.00 0.00 36.00 2.66
263 264 5.506708 AGAGAAACAAACACCACCTAAGTT 58.493 37.500 0.00 0.00 0.00 2.66
264 265 5.112129 AGAGAAACAAACACCACCTAAGT 57.888 39.130 0.00 0.00 0.00 2.24
265 266 6.289064 ACTAGAGAAACAAACACCACCTAAG 58.711 40.000 0.00 0.00 0.00 2.18
266 267 6.099269 AGACTAGAGAAACAAACACCACCTAA 59.901 38.462 0.00 0.00 0.00 2.69
267 268 5.601313 AGACTAGAGAAACAAACACCACCTA 59.399 40.000 0.00 0.00 0.00 3.08
268 269 4.409247 AGACTAGAGAAACAAACACCACCT 59.591 41.667 0.00 0.00 0.00 4.00
269 270 4.704965 AGACTAGAGAAACAAACACCACC 58.295 43.478 0.00 0.00 0.00 4.61
270 271 7.656137 TCATAAGACTAGAGAAACAAACACCAC 59.344 37.037 0.00 0.00 0.00 4.16
271 272 7.656137 GTCATAAGACTAGAGAAACAAACACCA 59.344 37.037 0.00 0.00 41.64 4.17
272 273 8.019769 GTCATAAGACTAGAGAAACAAACACC 57.980 38.462 0.00 0.00 41.64 4.16
288 289 7.612677 TCAGGGACTAGAAAAAGTCATAAGAC 58.387 38.462 0.00 0.00 46.40 3.01
289 290 7.674348 TCTCAGGGACTAGAAAAAGTCATAAGA 59.326 37.037 0.00 1.45 46.40 2.10
290 291 7.762159 GTCTCAGGGACTAGAAAAAGTCATAAG 59.238 40.741 0.00 0.00 46.40 1.73
291 292 7.612677 GTCTCAGGGACTAGAAAAAGTCATAA 58.387 38.462 0.00 0.00 46.40 1.90
292 293 7.171630 GTCTCAGGGACTAGAAAAAGTCATA 57.828 40.000 0.00 0.00 46.40 2.15
293 294 6.043854 GTCTCAGGGACTAGAAAAAGTCAT 57.956 41.667 0.00 0.00 46.40 3.06
294 295 5.470047 GTCTCAGGGACTAGAAAAAGTCA 57.530 43.478 0.00 0.00 46.40 3.41
306 307 6.095580 AGTCTTTTTCAAAAAGTCTCAGGGAC 59.904 38.462 19.82 9.96 44.80 4.46
307 308 6.187682 AGTCTTTTTCAAAAAGTCTCAGGGA 58.812 36.000 19.82 0.00 0.00 4.20
308 309 6.319911 AGAGTCTTTTTCAAAAAGTCTCAGGG 59.680 38.462 32.92 9.30 41.54 4.45
309 310 7.326968 AGAGTCTTTTTCAAAAAGTCTCAGG 57.673 36.000 32.92 9.88 41.54 3.86
312 313 9.723447 CCTTAAGAGTCTTTTTCAAAAAGTCTC 57.277 33.333 28.45 28.45 40.35 3.36
313 314 9.462606 TCCTTAAGAGTCTTTTTCAAAAAGTCT 57.537 29.630 18.64 18.64 0.00 3.24
314 315 9.723447 CTCCTTAAGAGTCTTTTTCAAAAAGTC 57.277 33.333 19.82 15.25 37.87 3.01
315 316 8.687242 CCTCCTTAAGAGTCTTTTTCAAAAAGT 58.313 33.333 19.82 4.20 41.47 2.66
316 317 8.687242 ACCTCCTTAAGAGTCTTTTTCAAAAAG 58.313 33.333 15.46 15.46 41.47 2.27
317 318 8.466798 CACCTCCTTAAGAGTCTTTTTCAAAAA 58.533 33.333 11.40 0.00 41.47 1.94
318 319 7.416326 GCACCTCCTTAAGAGTCTTTTTCAAAA 60.416 37.037 11.40 0.00 41.47 2.44
319 320 6.039382 GCACCTCCTTAAGAGTCTTTTTCAAA 59.961 38.462 11.40 0.00 41.47 2.69
320 321 5.531287 GCACCTCCTTAAGAGTCTTTTTCAA 59.469 40.000 11.40 0.00 41.47 2.69
321 322 5.063880 GCACCTCCTTAAGAGTCTTTTTCA 58.936 41.667 11.40 0.00 41.47 2.69
322 323 5.309638 AGCACCTCCTTAAGAGTCTTTTTC 58.690 41.667 11.40 0.00 41.47 2.29
323 324 5.311844 AGCACCTCCTTAAGAGTCTTTTT 57.688 39.130 11.40 0.00 41.47 1.94
324 325 4.984146 AGCACCTCCTTAAGAGTCTTTT 57.016 40.909 11.40 0.00 41.47 2.27
325 326 4.595350 AGAAGCACCTCCTTAAGAGTCTTT 59.405 41.667 11.40 0.00 41.47 2.52
326 327 4.164204 AGAAGCACCTCCTTAAGAGTCTT 58.836 43.478 10.87 10.87 41.47 3.01
327 328 3.785364 AGAAGCACCTCCTTAAGAGTCT 58.215 45.455 3.36 0.00 41.47 3.24
328 329 5.662674 TTAGAAGCACCTCCTTAAGAGTC 57.337 43.478 3.36 0.00 41.47 3.36
329 330 5.780793 TCTTTAGAAGCACCTCCTTAAGAGT 59.219 40.000 3.36 0.00 41.47 3.24
330 331 6.071051 AGTCTTTAGAAGCACCTCCTTAAGAG 60.071 42.308 3.36 0.00 42.83 2.85
331 332 5.780793 AGTCTTTAGAAGCACCTCCTTAAGA 59.219 40.000 3.36 0.00 0.00 2.10
332 333 6.043854 AGTCTTTAGAAGCACCTCCTTAAG 57.956 41.667 0.00 0.00 0.00 1.85
333 334 6.435292 AAGTCTTTAGAAGCACCTCCTTAA 57.565 37.500 0.00 0.00 0.00 1.85
334 335 6.435292 AAAGTCTTTAGAAGCACCTCCTTA 57.565 37.500 0.00 0.00 0.00 2.69
335 336 4.984146 AAGTCTTTAGAAGCACCTCCTT 57.016 40.909 0.00 0.00 0.00 3.36
336 337 4.984146 AAAGTCTTTAGAAGCACCTCCT 57.016 40.909 0.00 0.00 0.00 3.69
337 338 5.122554 GCTAAAAGTCTTTAGAAGCACCTCC 59.877 44.000 16.55 0.00 44.70 4.30
338 339 5.701290 TGCTAAAAGTCTTTAGAAGCACCTC 59.299 40.000 18.74 0.83 44.70 3.85
339 340 5.621193 TGCTAAAAGTCTTTAGAAGCACCT 58.379 37.500 18.74 0.00 44.70 4.00
340 341 5.941948 TGCTAAAAGTCTTTAGAAGCACC 57.058 39.130 18.74 1.33 44.70 5.01
341 342 8.628882 TTTTTGCTAAAAGTCTTTAGAAGCAC 57.371 30.769 20.88 2.24 44.70 4.40
342 343 8.856490 CTTTTTGCTAAAAGTCTTTAGAAGCA 57.144 30.769 20.79 18.74 44.70 3.91
373 374 3.653164 ACCAAACAGGATGGGACTTTTT 58.347 40.909 0.00 0.00 43.62 1.94
374 375 3.328535 ACCAAACAGGATGGGACTTTT 57.671 42.857 0.00 0.00 43.62 2.27
375 376 3.328535 AACCAAACAGGATGGGACTTT 57.671 42.857 0.00 0.00 43.62 2.66
376 377 2.965147 CAAACCAAACAGGATGGGACTT 59.035 45.455 0.00 0.00 43.62 3.01
377 378 2.597455 CAAACCAAACAGGATGGGACT 58.403 47.619 0.00 0.00 43.62 3.85
378 379 1.000843 GCAAACCAAACAGGATGGGAC 59.999 52.381 0.00 0.00 43.62 4.46
379 380 1.133199 AGCAAACCAAACAGGATGGGA 60.133 47.619 0.00 0.00 43.62 4.37
380 381 1.341080 AGCAAACCAAACAGGATGGG 58.659 50.000 0.00 0.00 43.62 4.00
381 382 2.493278 CCTAGCAAACCAAACAGGATGG 59.507 50.000 0.00 0.00 43.62 3.51
382 383 2.493278 CCCTAGCAAACCAAACAGGATG 59.507 50.000 0.00 0.00 46.00 3.51
383 384 2.378547 TCCCTAGCAAACCAAACAGGAT 59.621 45.455 0.00 0.00 41.22 3.24
384 385 1.777878 TCCCTAGCAAACCAAACAGGA 59.222 47.619 0.00 0.00 41.22 3.86
385 386 1.886542 GTCCCTAGCAAACCAAACAGG 59.113 52.381 0.00 0.00 45.67 4.00
386 387 2.863809 AGTCCCTAGCAAACCAAACAG 58.136 47.619 0.00 0.00 0.00 3.16
387 388 3.306472 AAGTCCCTAGCAAACCAAACA 57.694 42.857 0.00 0.00 0.00 2.83
388 389 4.665833 AAAAGTCCCTAGCAAACCAAAC 57.334 40.909 0.00 0.00 0.00 2.93
389 390 4.959839 AGAAAAAGTCCCTAGCAAACCAAA 59.040 37.500 0.00 0.00 0.00 3.28
390 391 4.542697 AGAAAAAGTCCCTAGCAAACCAA 58.457 39.130 0.00 0.00 0.00 3.67
391 392 4.178956 AGAAAAAGTCCCTAGCAAACCA 57.821 40.909 0.00 0.00 0.00 3.67
392 393 5.314529 ACTAGAAAAAGTCCCTAGCAAACC 58.685 41.667 0.00 0.00 34.70 3.27
393 394 6.483385 GACTAGAAAAAGTCCCTAGCAAAC 57.517 41.667 0.00 0.00 40.06 2.93
403 404 5.479124 TGGTGTAGGGACTAGAAAAAGTC 57.521 43.478 0.00 0.00 44.14 3.01
404 405 5.899631 TTGGTGTAGGGACTAGAAAAAGT 57.100 39.130 0.00 0.00 44.14 2.66
405 406 7.284716 ACTTTTTGGTGTAGGGACTAGAAAAAG 59.715 37.037 0.00 0.00 44.14 2.27
406 407 7.120716 ACTTTTTGGTGTAGGGACTAGAAAAA 58.879 34.615 0.00 0.00 44.14 1.94
407 408 6.665695 ACTTTTTGGTGTAGGGACTAGAAAA 58.334 36.000 0.00 0.00 44.14 2.29
408 409 6.256643 ACTTTTTGGTGTAGGGACTAGAAA 57.743 37.500 0.00 0.00 44.14 2.52
409 410 5.221783 GGACTTTTTGGTGTAGGGACTAGAA 60.222 44.000 0.00 0.00 44.14 2.10
410 411 4.285260 GGACTTTTTGGTGTAGGGACTAGA 59.715 45.833 0.00 0.00 44.14 2.43
411 412 4.565028 GGGACTTTTTGGTGTAGGGACTAG 60.565 50.000 0.00 0.00 44.14 2.57
412 413 3.328637 GGGACTTTTTGGTGTAGGGACTA 59.671 47.826 0.00 0.00 41.75 2.59
413 414 2.107726 GGGACTTTTTGGTGTAGGGACT 59.892 50.000 0.00 0.00 46.37 3.85
414 415 2.107726 AGGGACTTTTTGGTGTAGGGAC 59.892 50.000 0.00 0.00 27.25 4.46
415 416 2.107552 CAGGGACTTTTTGGTGTAGGGA 59.892 50.000 0.00 0.00 34.60 4.20
416 417 2.107552 TCAGGGACTTTTTGGTGTAGGG 59.892 50.000 0.00 0.00 34.60 3.53
417 418 3.502123 TCAGGGACTTTTTGGTGTAGG 57.498 47.619 0.00 0.00 34.60 3.18
418 419 5.126384 TGTTTTCAGGGACTTTTTGGTGTAG 59.874 40.000 0.00 0.00 34.60 2.74
419 420 5.017490 TGTTTTCAGGGACTTTTTGGTGTA 58.983 37.500 0.00 0.00 34.60 2.90
420 421 3.835395 TGTTTTCAGGGACTTTTTGGTGT 59.165 39.130 0.00 0.00 34.60 4.16
421 422 4.464069 TGTTTTCAGGGACTTTTTGGTG 57.536 40.909 0.00 0.00 34.60 4.17
422 423 5.221742 TGTTTGTTTTCAGGGACTTTTTGGT 60.222 36.000 0.00 0.00 34.60 3.67
423 424 5.121611 GTGTTTGTTTTCAGGGACTTTTTGG 59.878 40.000 0.00 0.00 34.60 3.28
424 425 5.121611 GGTGTTTGTTTTCAGGGACTTTTTG 59.878 40.000 0.00 0.00 34.60 2.44
425 426 5.242434 GGTGTTTGTTTTCAGGGACTTTTT 58.758 37.500 0.00 0.00 34.60 1.94
426 427 4.323180 GGGTGTTTGTTTTCAGGGACTTTT 60.323 41.667 0.00 0.00 34.60 2.27
427 428 3.196901 GGGTGTTTGTTTTCAGGGACTTT 59.803 43.478 0.00 0.00 34.60 2.66
428 429 2.764010 GGGTGTTTGTTTTCAGGGACTT 59.236 45.455 0.00 0.00 34.60 3.01
429 430 2.384828 GGGTGTTTGTTTTCAGGGACT 58.615 47.619 0.00 0.00 43.88 3.85
430 431 1.411246 GGGGTGTTTGTTTTCAGGGAC 59.589 52.381 0.00 0.00 0.00 4.46
431 432 1.689892 GGGGGTGTTTGTTTTCAGGGA 60.690 52.381 0.00 0.00 0.00 4.20
432 433 0.756294 GGGGGTGTTTGTTTTCAGGG 59.244 55.000 0.00 0.00 0.00 4.45
433 434 1.788229 AGGGGGTGTTTGTTTTCAGG 58.212 50.000 0.00 0.00 0.00 3.86
434 435 3.243737 GCTAAGGGGGTGTTTGTTTTCAG 60.244 47.826 0.00 0.00 0.00 3.02
435 436 2.696187 GCTAAGGGGGTGTTTGTTTTCA 59.304 45.455 0.00 0.00 0.00 2.69
436 437 2.963101 AGCTAAGGGGGTGTTTGTTTTC 59.037 45.455 0.00 0.00 0.00 2.29
437 438 3.040655 AGCTAAGGGGGTGTTTGTTTT 57.959 42.857 0.00 0.00 0.00 2.43
438 439 2.767644 AGCTAAGGGGGTGTTTGTTT 57.232 45.000 0.00 0.00 0.00 2.83
439 440 3.697166 CATAGCTAAGGGGGTGTTTGTT 58.303 45.455 0.00 0.00 0.00 2.83
440 441 2.620627 GCATAGCTAAGGGGGTGTTTGT 60.621 50.000 0.00 0.00 0.00 2.83
441 442 2.024414 GCATAGCTAAGGGGGTGTTTG 58.976 52.381 0.00 0.00 0.00 2.93
442 443 1.408266 CGCATAGCTAAGGGGGTGTTT 60.408 52.381 0.00 0.00 0.00 2.83
443 444 0.180406 CGCATAGCTAAGGGGGTGTT 59.820 55.000 0.00 0.00 0.00 3.32
444 445 1.830145 CGCATAGCTAAGGGGGTGT 59.170 57.895 0.00 0.00 0.00 4.16
445 446 1.598130 GCGCATAGCTAAGGGGGTG 60.598 63.158 13.97 0.63 44.04 4.61
446 447 2.829592 GCGCATAGCTAAGGGGGT 59.170 61.111 13.97 0.00 44.04 4.95
491 492 0.107410 TTGTCTTTGGTGTCGTGGCT 60.107 50.000 0.00 0.00 0.00 4.75
496 497 1.197721 GGAGCATTGTCTTTGGTGTCG 59.802 52.381 0.00 0.00 0.00 4.35
503 504 3.685139 TTCTCTCGGAGCATTGTCTTT 57.315 42.857 0.00 0.00 0.00 2.52
613 625 1.006571 ACAGACCCGTACGTGCAAG 60.007 57.895 15.21 0.00 0.00 4.01
614 626 1.300311 CACAGACCCGTACGTGCAA 60.300 57.895 15.21 0.00 0.00 4.08
645 657 5.046014 CAGGAGATCATAGTTTATGGGGGAG 60.046 48.000 0.00 0.00 36.81 4.30
650 662 6.820335 TGTCACAGGAGATCATAGTTTATGG 58.180 40.000 0.00 0.00 36.81 2.74
741 760 0.319555 TGGACGGAGACAAAGAAGCG 60.320 55.000 0.00 0.00 0.00 4.68
841 869 4.077184 TAAGGAGGTGCGGTGCGG 62.077 66.667 0.00 0.00 0.00 5.69
842 870 1.940883 TAGTAAGGAGGTGCGGTGCG 61.941 60.000 0.00 0.00 0.00 5.34
843 871 0.464452 ATAGTAAGGAGGTGCGGTGC 59.536 55.000 0.00 0.00 0.00 5.01
844 872 2.936498 CAAATAGTAAGGAGGTGCGGTG 59.064 50.000 0.00 0.00 0.00 4.94
845 873 2.570302 ACAAATAGTAAGGAGGTGCGGT 59.430 45.455 0.00 0.00 0.00 5.68
846 874 3.118738 AGACAAATAGTAAGGAGGTGCGG 60.119 47.826 0.00 0.00 0.00 5.69
913 941 4.209703 GGTGACGAAGAACAAAATGTACGA 59.790 41.667 0.00 0.00 0.00 3.43
954 995 1.072331 AGTCTTTGCAGGTGGTGTAGG 59.928 52.381 0.00 0.00 0.00 3.18
978 1019 1.866063 GCTGATCGATCGGACCAAGAC 60.866 57.143 33.44 13.15 35.13 3.01
983 1024 0.668706 CATGGCTGATCGATCGGACC 60.669 60.000 32.44 29.49 40.62 4.46
984 1025 0.315251 TCATGGCTGATCGATCGGAC 59.685 55.000 33.44 31.72 41.74 4.79
986 1027 1.143305 GTTCATGGCTGATCGATCGG 58.857 55.000 26.79 26.79 36.26 4.18
987 1028 0.780596 CGTTCATGGCTGATCGATCG 59.219 55.000 20.03 9.36 43.89 3.69
990 1031 1.521457 GGCGTTCATGGCTGATCGA 60.521 57.895 16.25 0.00 43.89 3.59
993 1034 2.108514 CGTGGCGTTCATGGCTGAT 61.109 57.895 0.00 0.00 35.06 2.90
1033 1082 2.592308 GCTCCTCCGGCCAAAGAT 59.408 61.111 2.24 0.00 0.00 2.40
1308 1357 3.812019 AGCTCAGCGTCGTACCGG 61.812 66.667 0.00 0.00 0.00 5.28
1425 1474 3.458163 TACCCGCTCGCCTTCTGG 61.458 66.667 0.00 0.00 0.00 3.86
1470 1519 2.267426 CGCTCAAACATCATACCGTCA 58.733 47.619 0.00 0.00 0.00 4.35
1477 1526 0.883153 TTGCAGCGCTCAAACATCAT 59.117 45.000 7.13 0.00 0.00 2.45
1524 1573 5.766150 ACGGTCAAATGAAAGAATCAACA 57.234 34.783 0.00 0.00 42.54 3.33
1657 3972 8.715191 ACTCATAAACATGCAAAACTTTGAAA 57.285 26.923 6.37 0.00 40.55 2.69
1677 3993 9.485206 AGTGAAAACATTAGTAACGTTACTCAT 57.515 29.630 37.09 29.84 42.66 2.90
1683 3999 8.205131 AGTTCAGTGAAAACATTAGTAACGTT 57.795 30.769 7.25 5.88 0.00 3.99
1715 4031 5.846994 TGACAAACGACGTGCAAAATAATAC 59.153 36.000 0.00 0.00 0.00 1.89
1720 4036 2.446282 GTGACAAACGACGTGCAAAAT 58.554 42.857 0.00 0.00 0.00 1.82
1757 4073 7.556844 TGGGATTTAGAATCTAACTGACTGAC 58.443 38.462 1.61 0.00 0.00 3.51
1816 4132 8.740906 CATACTACTCCTATGTATGGTAACTGG 58.259 40.741 0.00 0.00 39.58 4.00
1832 4154 5.126067 ACATGCATCCAAACATACTACTCC 58.874 41.667 0.00 0.00 0.00 3.85
1833 4155 5.817296 TGACATGCATCCAAACATACTACTC 59.183 40.000 0.00 0.00 0.00 2.59
1834 4156 5.744171 TGACATGCATCCAAACATACTACT 58.256 37.500 0.00 0.00 0.00 2.57
1835 4157 6.435430 TTGACATGCATCCAAACATACTAC 57.565 37.500 0.00 0.00 0.00 2.73
1848 4170 5.009610 ACTTTTACTTCCGTTTGACATGCAT 59.990 36.000 0.00 0.00 0.00 3.96
1849 4171 4.336993 ACTTTTACTTCCGTTTGACATGCA 59.663 37.500 0.00 0.00 0.00 3.96
1850 4172 4.855531 ACTTTTACTTCCGTTTGACATGC 58.144 39.130 0.00 0.00 0.00 4.06
1851 4173 9.113876 GATTAACTTTTACTTCCGTTTGACATG 57.886 33.333 0.00 0.00 0.00 3.21
1894 4216 1.821216 AGGTGCGTCAGTTAATTGGG 58.179 50.000 0.00 0.00 0.00 4.12
1903 4228 6.672357 GCAGTTTTATACTAAAGGTGCGTCAG 60.672 42.308 0.00 0.00 34.56 3.51
2018 4343 4.034285 ACTTTTACAGTTGGATCCCTGG 57.966 45.455 18.81 5.78 32.90 4.45
2019 4344 7.148069 GGATTTACTTTTACAGTTGGATCCCTG 60.148 40.741 9.90 12.70 36.88 4.45
2020 4345 6.890268 GGATTTACTTTTACAGTTGGATCCCT 59.110 38.462 9.90 0.00 36.88 4.20
2045 4370 7.996002 CAAAGTTCTATGAAAATTTGGACGTG 58.004 34.615 0.00 0.00 39.35 4.49
2114 4439 8.449397 TGCCCATCAAAAATTGAATTAATTTCG 58.551 29.630 1.43 0.00 45.74 3.46
2128 4454 3.256879 TGCGTAGAAATGCCCATCAAAAA 59.743 39.130 0.00 0.00 36.76 1.94
2188 4516 3.181423 ACAATTACATGGGACCCACTTGT 60.181 43.478 17.78 19.75 35.80 3.16
2258 4586 4.430007 CATACTCCGAGAACCGAAATTGA 58.570 43.478 1.33 0.00 41.76 2.57
2299 4627 5.073008 ACAAATCCAATTAAAACCTTGCCCT 59.927 36.000 0.00 0.00 0.00 5.19
2302 4630 7.671495 ATGACAAATCCAATTAAAACCTTGC 57.329 32.000 0.00 0.00 0.00 4.01
2352 4681 8.810427 CATACATATGCAACTTGGTCAATTTTC 58.190 33.333 1.58 0.00 0.00 2.29
2424 4754 2.868583 GAGTGTCTGCGTCTATACCGTA 59.131 50.000 0.00 0.00 0.00 4.02
2427 4757 2.422479 TGTGAGTGTCTGCGTCTATACC 59.578 50.000 0.00 0.00 0.00 2.73
2439 4769 2.355756 ACACATGCTTGTTGTGAGTGTC 59.644 45.455 10.51 0.00 45.83 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.