>input_sequence_79529
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--------ATGAACGCCACGGTCAGTGTTAGCGGCGGTGCCATCTTTGGCCGGAGGAGCCACCGCACTGTCAAGGCGGCG
GCGGCTGCGAGCGCTGGCGTCCGCCGCCCGGCGGGCAGGACCACGGACTACTACAAGGTGCTGTCGCTGGAGCACTCGGC
GGGCGTGGGCGAGGAGGAGGTCAAGCGCGCGTACCGGCGGCTGGCGCTGCAGTACCACCCCGACGTGTGCCCGACGTCGC
GCAGGGCCGAGTCCACGGAGCTCTTCGTCGAGCTCCGCCGCGCCTACGAGACGCTGTCCGACCCGGCTACGAGGGTCCGG
TACGACGCTGAGCTGAGGACGGGCCGGGCTGAGGCGAGGCTGGCGGCGGATGGGTTCGCGAGGGACGTGTGGGAGGCGCA
GCTGTGCGTGCTGCGGGCGCGGTCCGAGCGGCGCCAGAAGGCGAGCGGGTACAGCGGCCGCCGGTTCTAG----------
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>chr5B_1_TraesCS5B01G192700
GGTTAAATTAGTTGCATGTGTCATTCGTTCGATTAGCTGCATATGTCCATGCCGTTAGTTTATTTGAAATGACATTCATA
ACATTTGAGGATGTTTTGTTGGTGGAATGTTGGTTGGCCACTTGGTCGGGCGAACCATCCATGGTTGGATACCATGGAAA
CTGCACTGGAGCTCCACCGCCTCCCTCGTGGCATCAAGGCCAGGAGGAAAGTATGGGCATAGCCGCATAGCGCATGGCTT
GAGCACGGAGCGAAGCCCAGTGAAACTTAGGTGGTGTTTGTTTCTCTAGTCTTATGACTTTTTCTAGTCCCTGAGACTTT
TTGAAAAAGACTCTTAAGGAGGTGCTTCTAAAGACTTTTAGCAAAAAGTCTTAAAAAAGTCCCATCCTGTTTGGTTTGCT
AGGGACTTTTTCTAGTCCCTACACCAAAAAGTCCCTGAAAACAAACACCCCCTTAGCTATGCGCTTACGCACATCAGGTA
TTGATAATATTAGCCACGACACCAAAGACAATGCTCCGAGAGAAACAAGGAATAGCGCGTGAACTATTCCCATTGCCGGA
GCGGATTAATTAACCAAGTAATCAGAGCTGTCGCTCACCTGGATTTTTAAT-----------TTCTTGCACGTACGGGTC
TGTGAGGAGGAGAATCCTCCCC---CATAAACTATGATCTCCTGTGACAGCCACACGGTCAAACCTCAGACGGCGGAAAC
AGGCGAATCTACGTGCGG----GTCGACCGCCACGCGCACGCT--------TCTTTGTCTCCGTCCAAATGGCGCATCCG
TATACGGTA-TACCTTCACCACCAATTTACCCAAACCTAAAACGCGTTGCAGCACCGGCCGCGCGCGTCCGCACCGCACC
TCCTTACTATTTGTCTCGTCCTCCGGCGCGCCGTTCCGGTCCGGCCTATATATACATGGTTCG-----TACATTTTGTTC
TTCGTCACCGCCAGTG--------CGCACCTCGCCCTACACCACCTGCAAAGACTTCTGTCTTGGTCCGATCGAT-----
---CAGCCATGAACGCCACGGTCAGTGTTAGCGGCGGTGCCATCTTTGGCCGGAGGAGCCACCGCACTGTCAAGGCGGCG
GCGGCTGCGAGCGCTGGCGTCCGCCGCCCGGCGGGCAGGACCACGGACTACTACAAGGTGCTGTCGCTGGAGCACTCGGC
GGGCGTGGGCGAGGAGGAGGTCAAGCGCGCGTACCGGCGGCTGGCGCTGCAGTACCACCCCGACGTGTGCCCGACGTCGC
GCAGGGCCGAGTCCACGGAGCTCTTCGTCGAGCTCCGCCGCGCCTACGAGACGCTGTCCGACCCGGCTACGAGGGTCCGG
TACGACGCTGAGCTGAGGACGGGCCGGGCTGAGGCGAGGCTGGCGGCGGATGGGTTCGCGAGGGACGTGTGGGAGGCGCA
GCTGTGCGTGCTGCGGGCGCGGTCCGAGCGGCGCCAGAAGGCGAGCGGGTACAGCGGCCGCCGGTTCTAGGCGATGGATG
ACGGTATGATGTTTGAGCGCTGCAAGCTCAAGTTTGTTCCTTGTGTTGACCTTGTTGATTCTTTCATTTGACCGTACCCG
TACACACAGAGTGATGACTCGTGGCATCTGTTTTTATTTGGGTGTTTGAGTTGTGTAAGGCGTA----------------
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----------ATATCATGACAAAAATAACTGATTTTTCAATGAAGTTTTTTT-TTCAAAGTTTTGCATGTTTATGAGTAA
CGTTACTAATGTTTTCACTGAACTCCACGTGTATTATTTTGCACGTCGTTTGTCACCTGAAAATAAACTGAAGTCAGTCA
GTTAGATTCTAAATCCCATTTTCATATAATTTGAATTAGATGCAAAATATTCCAGTTACCAT------ACATAGGAGTAG
TATGTTTGGATGCATGTCAAACGGAAGTAAAAGTTAATCATTCTACTTCCTCCGACCCAAT---TAACTGACGCACCTTT
AGTATAAAACTGCAGTGTTATTTTTTGTGCTTTCAATTTAATATCGTTGTTACACATAAAATATTGCTCAAAATCAGTTG
AAATTTGGCTAATGTTGTTCGGCCAGGGATCCAACTGTAAAAGTAAATCCACGTCCAAATTTTCATAGAACTTTGGTATT
TAAAAGTTCAACCTTGTGTTCACGCTATAAAGTTTCCACGAAATTAATTCAA-TTTTTGATGGGCATT-TCTACGCACCG
AGGAGCAACTTGAGCTTATTGC-AGATCGACTCGTACAAGTGGGTCCCATGTAATTGTATGTAGTACATTTATGGTTTCA
ATTCTTGTGCTCATATTTGTGGAATTCAATTTCGGTTCTCGGAGTATGGACTCAATTCGTGGGAGCAGGGCAAGGTTTTA
ATTGGATTTGTCATTTCTAAAGCTAAAAAAAATCTTG-TTGAAAATTGACCAAGTTGCATATGTATGCATAG-ATTTAGA
TCTAGATTCATCATTTCATATTTTCTTTAGAAATACGGTATAGACGCAGACACTCACAACAAGCATGTGTA
>chr5D_452
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---------------------------------------------------CTTCGCTATGCGCTTACGCACATGATGTA
TTGATAATATTTGCCATGACACCCAAGACAATGCTCCGAGAGAAACAAGGAATAGCGCGTGAACTATTCCCATTGCCGGA
GCGGATTAATTAACCAACTAATCAGAGCTGTCGCTCACCTGGATTTTTAAT-----------TT--TGCACGTACGGGTC
TGTGAGGAGGAGAATCTTCCCTCGTCATAAACTAACATCTCCTGTGACAGC-ACACGGTCAAACCTCAGACGGCGGTAAC
AGGCGAATCTACGTGCGGGCCG---------CACGCGCAGGCT--------TCTTTGTCTCCGTCCAAATGGCGCATCCG
CATACGGTATTACCTTCACCACCAATTTACCCAAACCTAAAACGCGTTACCGTACCGGCCGAGCG---------CGCACC
TCCTTACTGTTTGTCTCGTCCTCCGGCGCGCCGCTCCGGTCCGGCCTATATATACATGCTCCGTACTATACATTTTGATC
TTCGTCACCGCCAGTAGCCAAGTACGCACCTCGCTCTACACCGCCTGCAAAGACTTCTTTCTTTCTTGGAACGTTCGACC
AGCCAGCCATGAACGCCACGGTCAGTGTTAGCGGCGGTGCCGTCTTTGGCCGGAGGAGCCGCCGCACTGTGAAGGCGGCG
GCGGCTGCGAGCGCTGGCGTCCGCCGCCCGGCGGGCAGGACCACGGACTACTACAAGGTGCTGTCGCTGGAGCACTCGGC
GGGCGTGGGCGAGGAGGAGGTCAAGCGCGCGTACCGGCGGCTGGCGCTGCAGTACCACCCCGACGTGTGCCCGCCGTCGC
GCAGGGCCGAGTCCACGGAGCTCTTTGTCGAGCTCCGCCGCGCCTACGAGACGCTGTCCGACCCGGCCACGAGGGTGCGG
TACGACGCCGAGCTGAGGACGGGCCGGGCTGAGGCGAGGCCGCCGGCGGATGGGTTCGCGAGGGACGTGTGGGAGGCGCA
GCTGTGCGTGCTGCGGGCGCGGTCCGAGCGTCGGCAGAAGGCGAGCGGGTACAGCGGCCGCCGGTTCTAGGCGATGGACG
ATGGTCTGATGCTTGAGCGCTGCAAGCTCAAATTTGTTCCTTATGTTGACCTGGTTGATTCTTTCATTTGACGGTATCCG
TACACACAGAGTGATGACTCGTGGCATCTGTTTTTATTTGGGTGTTTGAGTTGTGTAAGGTGTA----------------
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----------ATATCATGACAAAAATAACTGATTTTA-AATGAAGTTTTTTAATTCAAAGTTTTGAATGTTTTTGAGTGA
CGTTACTAATGTTTTCACTGAACTCCACGTATATTGTTTTGCACGTCGTTTGTCACCCCAAAATAAACTGAACTCATTCA
GTTAGATTCTAAATCCCATTCTCATATAATTTGAATTAGAAGCAAAATATTTCAGTTACCAT------ACATA----TAG
TATGTTTGG----ATGTCAAACGGAAGTAAAAGTTAATCATTCTACTTCCTCCGATCCAAATTATAATTGACGCACCTTT
AGTATAATGAGGGAGTATTACTTTTTGTGCTTTGAATGTAATATCGTTTTCACACATAAAATATTGCTCAAAATTAGTTG
AAATTTGGCTAATGTTGTTTGGAGGGGGAACCAACTGTAAAAGTAAATCGACGTCCAAATTTTCGTAGAACTTTGGTATT
TAAAAGTTCAACCTTGTGTTCGCGCTATAAAGTTTCCATGAAATTATTTCAA-ATTTCGATGGGCATTGTCTACGCACCG
AGGAGCAACTTGATCTTATTGCCAGGTCGCCTCGTGCAAGTA-GGCCAATGAAATTGTATATGGTATATTCATGGTTTCA
ATTCTTGTGCTCATATTTGTGGAATACAATTTCAATTAATGGAGTATGAACTCAATTCGTGGGAGCCGGACAAGGTTTTA
ATTGGATTTGTCATTTCTAAAGCCAC-AAAAATGTTG-TTAAAAATTAACGAAGTTGCATATGTATGCATAATATTTAGA
TCTAGATTCATCATTTCATATTTTCTTTAGAAACACCGTATAGACGCAAACATTCATAACAAGCACGTGTA
>chr5A_452
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---------------------------------------------------CTTAGCTATGCGCTTACGCACATCAGGTA
TTGATAATATTTGCCATGACACCCAAGACAATGCTCCGAGAGAAACAAGGAATAGCGCGTGAACTATTCCCATTGCCGGA
GCGGATTAATTAACCAACTAATCAGAGCTGTCGCTCGCCTGGATTTTTAATTTCTTGCACCATT--TGCACGTACGGGTC
TGTGAGGAGGAGAATCTTCCATCATCATAAACTATGATCTCCTGTAACAGCCACACGGTCAAACCTCAGACGGCGGAAAC
AGGCGAATCTACGTGCGGCCGGGTCGACCGCCACCTTCCGCACGCGCACTCTCTTTGTCTCCGTCCAAATGGCGCATCCG
TATACGGTAT-ACCTTCACCACCAATTTACCCAAACCTAAAACGCGTTACCGCACCGGCCGACCG---------CGCACC
TCCTTACTATTTGTCTCGTCCTCCGGCGCGCCGCTCCGGTCCGGCCTATATATACATGGTCCG-----TACATTTTGTTC
TTCGTCACCGCC--------AGTACGCACCTCGCTCTACACCGCCTGCAAGGACTTCTTTCTTTCTTGGAACGTTCGAC-
---CAGCCATGAACGCCACGGTCAGTGTTAGCGGCGGTGCCGTCTTTGGCCGGAGGAGCCGCCGCACTGTCAAGGCGGCC
GCGGCTGCGAGCGCTGGCGTCCGCCGCCCGGCGGGCAGGGCCACGGACTACTACAAGGTGCTGTCGCTGGAGCACTCGGC
GGGCGTGGGCGAGGAGGAGGTCAAGCGCGCGTACCGGCGGCTGGCGCTGCAGTACCACCCCGACGTGTGCCCGCCGTCGC
GCAGGGCCGAGTCCACGGAGCTCTTCGTCGAGCTCCGCCGCGCCTACGAGACGCTGTCCGACCCGGCTACGAGGGTGCGG
TACGACGCTGAGCTGAGGACGGGCCGGGCTGAGGCGAGGCCGCCGGCGGATGGGTTCGCGAGGGACGTGTGGGAGGCGCA
GCTGTGCGTGCTGCGGGCGCGGTCCGAGCGGCGGCAGAAGGCGAGCGGGTACAGCGGCCGCCGGTTCTAGGCGATGGACG
ACGGTCTGATGCTTGAGCGCTGCAAGCTCAAGTTTGTTCCTTGTGTTGACCTGGTTGATTCTTTCATTTGACCGTACCCG
TACACACAGAGTGATGACTCGTGGCATCTGTTTTTATTTGGGTGTTTGAGTTGTGTAAGGTGTAACTAGGTAATTGCCCG
TGCGTTGCAACGGGATAAATATTTTATATTTAATCATTGTGATTTATTTAGCATGGTTTTCGCATTGTGCTACAGAACCG
AAATAAAAGATGCGAGCTCATAATTTGTCAAATGAGTACACAACAACTATCATTTCCCCTTTTTTTCAGCTATGACACAA
AGCAGCGTCCAATCTTTCAATTCCTATTTCAACTATCTTGGCAATATAGCTATATTTCTAGTGGTTATAATACCAACAGT
GCACTAAAGTGCACCATAGAGTCATGCCACACCATACGCATCAATTCACAAGCAACTGATTTGAAGATGTGAAAGTAAAA
AAGGAAAATCTAGTATACCTTTGGCACCCGCAAAAGAATCAGTAGAACTTTGGATGAAGAAAGTACATCGGAAGGTCTTG
TTAGTTGCAACTCTGGCACAAGAGTACTCCTGCAAACAAAAATATTTTGGCAGTGTGTATTTATCTATAATAGATCAAGG
GCAAGCAAAAGCAATCGTTCCCAGATGCCCTGAATCTTCCCCGGCAAAGACCTTGCATTACAAGTTGTTACAGCAGAGAA
TCACCATGTATGCTGCCGCCTACACGACCTGCAGCAGCAAATAATGCACACCGGCTCAATATAGGGAGTTGCAGAGAGTA
AGCGAGCTGCCGCTCCACACGAGTTGCCGCTGTACTGACATCCAGTAATAAGTATGTTCTTTTCAAGTAGAAGGGATGAG
ATTAATTAGATTTTTCACTTTTGTATATTGGCACCTTGAATTCCAGTAGTGCTTGCACTTAGTTTTGGCCGGGCTGCACT
ATCATGTTCACAATGGAACACAACGTCAATACCTTTACATAAAAATTTATAGGGGAATATGAGCTGCCAACCAGCATTCA
TGTACACTTTGATCTGAGAACCTGCTGTAGGCAAGTGAAAACTGTTTCTGAATTTCAGAAAGGAAATGGAAAAGAGGGTA
TGTGTTATATACCTTCAGAGTTTGTCTTCATCGAAAACCTTTCCAAGCGAACAACTATGAATTAAGAAACTGTATTTATA
ATGCACAAACATTCTCTTCGTAAAATCCATGCATTAACCATCGGGGAGCTCTTCCATATATATCCTTGAAAAAATAGTGT
GGCAGGCTTATGTTAGCGACAACTGAAGAGCACACGGATATTTAACATAGCATCCCAGTAGCAAGGATAAATATTAAGAA
ACAATATGCACTATAACACAACTAATTAATCGGAGCAATTCACTTCCTGTAACTGGAGATAGGCATTCAATCACACTACA
ATCACAACTGCATATGCATCTTGAATGCCACAATTTGAGCATCATGCACGCCTAGCCAACAAATTGATTGTAGTTGGATA
AAACTGAAGCAGGTCCCCTTGGAGTAACACCTTTGCAAGGCATGGTTTTCTGAGAAATGACGATTCAGACTACAGCCAAA
GGAATAGAAGTACCAAACTGTCACAGATCGCATTGTGTGCTATGGGAGCTTGCCGAGGGTAGGGTTGTCCTTGTAGGAAA
GGAACAAAATTAAAGAAAAAGCAAACACACCTGACATTAGACCTGATCACATGGGCAGTCAAGCTGCTCCTTTAGGAAAC
CTTGGGCGTATAGGAGCCAGAGAGGCTGTCCGCTACCCCATCTGTGGTTGCCGGTGTTGCGACCCTTCTTGCTGCAAGGG
GGGATTAAGGAGTTGTCGCCGCTGCTGGAAGGTCCATGGTGGAGGACATGGGAGAAGATGATGATATGGAGAGGAGACTC
TTCCTGGCCCTGCCTCCATTGGTCTTGTTCCCTGGAGAGCGGGACAAGAGTAGGTGACTACTGATCGTTCGAGGCCTCTC
TCAATTGGCTCTCGCACAGCGAGCCGCCATCGCCACTTGTTCCCTGGTGACACCATCGCCAATGGTCGCAGAAAGGGAGA
AGAGATGACTGGGCGTACGTCAAGAGAGAGTTGAGAAGAGGTGCTGACCTGCAAGAGCTCGTTGTCATCTGCATCATGGA
TTGCCACTGCCGCCGCCGCCGCCCCGAGAGAGATGATGAGATGTGTTTCGGGAGGAAAATAGGGTTAGTGGAGAAAAAGC
TGAGGGGGTTGAGGGAGGGGTCGAACCGGTTGAGTGGACACATTGACGAAAAAACCAGGGAAGGGTAAACGAAAAAAATC
GGTGGAGGAGGGACGTGCGGGAGGAGGGCAGACGAAGGACAACGACGTAAGAGGGGAAACAGAACGCTCCGTTTCTTTTA
GGTAATAGAGATATCATGACAAAAATAACTGATTTTTACATGAAGTTTTTTAATTCAAAGTTTTGCATGTTTTTGAGTGA
CGTTACTAATGTTTTCACTGAACTCCACGTATATTTGTTTGCACGTCGTTTGTCACCCCAAAATGAACTGAACTCATTCA
GTTAGATTCTAAATCCCATTCTCATATCATTTGAATTAGATGCAAAATATTTCAGTTACCATTCCCATACATA----TAG
TATGTTTGG----ATGTCAAACGGAAGTAAAAGTTAATCAATCTACTTCCTCCCATCCAATTAATTAGC-----------
----TAACGAGGGAGTATTATTTTTTGTGCTTTGAATTTAATATCGTTTTCACACATAAAATATTGCTCAAAATCAGTTG
AAATTTGGCTAATGTTGTTCGGATGGGGATCCAACTGTAAAAGTAAATCGACATCCAAATTTTCGTAGAACTTTGGTATT
TAAAAGTTCAAGGTTGTGTTCATGCTATAAAGTTTCCATGAAAATAATTCAAAATTTTGATGGGCATTGTCTACGCACCG
AGGAGCAACTTGAGCTTATTCCTAGATCAACTCGTGCAAGTGGGTCCCATGTAATTGTATGTAGTAAATTTATGGTTTCA
ATTCTTGTGCTCAAATTTGTGGAATGCATTTCA-GTTCTTGGAGTATGGACTCAATTCATGGGAGCCGGACAAGGTTTTA
ATTGGATTTGTCATTTCTAAAGCCAC-AAAAATCTTGCTTAAAAATTGAACAAGTTGCATATGTATGCATAGTATTTAGA
TCTAGATTCATCATTTCATATTTCCTTTAGAAACACAGTATAGACGCA--CACTCACAACAAACACGTGT-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------
-----------S----S------S--------------------------------------------------------
-----------------S----------------------------------------------SS--------------
----------------S----S----------------------------------------------------------
---------------------------------------S----------------------------------------
------------------------------------------------S-S----------S---SSSSSSSSS------
---------------------------------S--------------------------S-------------------
---------------S------------------S-------S---------------S----SS-SS--S--S------
-----------------------------------------S------------------S-------------------
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----------------------------------------------------------------------------S---
----------------------------------------S-S-------------------------------------
---------------------------------S--------------------------------------------S-
-----S-----S----------------------------------------S---------------------------
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-------------------------------------S-------------S--------------------S-----S-
------------------------------S----S---------------------SS-------------S---S---
--------------------S------------------------------S---------------------SSSS---
---------SSSS------------------------------------------S-----------S------------
-------SSSS-S---S----------------S--------------S-S-----------------------------
----------------------SSS------------------------S--------------S---------------
--------------------------------------S--------------S--------------------------
-----------------------------------S------------------------------S-------------
-------------------------S-------S-----S--------------------------S--S----------
-----------------------S-SS-------------S---------------------------------------
---------------------------------S--S-----------S----------------S-----
>forward_121
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---------------------GTGGAATGTTGGTTGGCCAC---------------------------------------
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>reverse_1526
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-----ATGATGTTTGAGCGCTGCAA-------------------------------------------------------
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