Multiple sequence alignment - TraesCS5B01G191900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G191900 chr5B 100.000 2734 0 0 1 2734 345346655 345349388 0.000000e+00 5049.0
1 TraesCS5B01G191900 chr5B 88.119 202 22 2 257 457 64626276 64626076 3.520000e-59 239.0
2 TraesCS5B01G191900 chr5B 94.872 156 3 5 59 211 224325519 224325672 3.520000e-59 239.0
3 TraesCS5B01G191900 chr5A 90.516 1434 64 31 765 2135 395760591 395759167 0.000000e+00 1829.0
4 TraesCS5B01G191900 chr5A 94.922 256 12 1 207 462 395761129 395760875 1.530000e-107 399.0
5 TraesCS5B01G191900 chr5A 90.000 230 12 5 2219 2437 395759020 395758791 1.240000e-73 287.0
6 TraesCS5B01G191900 chr5A 93.836 146 7 2 62 206 708307641 708307785 4.580000e-53 219.0
7 TraesCS5B01G191900 chr5A 89.474 171 15 3 477 645 32670909 32670740 2.130000e-51 213.0
8 TraesCS5B01G191900 chr5D 91.637 1112 51 21 827 1915 302351996 302353088 0.000000e+00 1500.0
9 TraesCS5B01G191900 chr5D 88.125 320 18 9 2219 2518 302353112 302353431 2.000000e-96 363.0
10 TraesCS5B01G191900 chr3A 99.231 130 1 0 74 203 598561822 598561951 4.550000e-58 235.0
11 TraesCS5B01G191900 chr3A 93.836 146 7 2 62 206 405827972 405828116 4.580000e-53 219.0
12 TraesCS5B01G191900 chr3A 89.349 169 18 0 479 647 718246746 718246578 2.130000e-51 213.0
13 TraesCS5B01G191900 chr3A 94.030 67 3 1 2664 2729 729480111 729480177 1.730000e-17 100.0
14 TraesCS5B01G191900 chr1D 97.122 139 4 0 65 203 178459500 178459638 4.550000e-58 235.0
15 TraesCS5B01G191900 chr1D 89.080 174 19 0 476 649 206955533 206955706 1.650000e-52 217.0
16 TraesCS5B01G191900 chr1D 89.412 170 17 1 480 649 168043419 168043587 2.130000e-51 213.0
17 TraesCS5B01G191900 chr1D 92.647 68 3 2 2664 2729 13495808 13495741 2.240000e-16 97.1
18 TraesCS5B01G191900 chr1D 92.063 63 4 1 2664 2725 407811518 407811456 1.350000e-13 87.9
19 TraesCS5B01G191900 chr6B 97.778 135 2 1 71 205 18270501 18270634 5.890000e-57 231.0
20 TraesCS5B01G191900 chr6B 96.403 139 4 1 77 215 277700313 277700176 7.620000e-56 228.0
21 TraesCS5B01G191900 chr6B 85.507 207 28 2 257 462 183611867 183611662 5.930000e-52 215.0
22 TraesCS5B01G191900 chr1B 97.761 134 3 0 72 205 649332861 649332728 5.890000e-57 231.0
23 TraesCS5B01G191900 chr3D 89.385 179 18 1 480 657 608747707 608747885 9.850000e-55 224.0
24 TraesCS5B01G191900 chr3D 90.361 166 16 0 479 644 529133645 529133810 4.580000e-53 219.0
25 TraesCS5B01G191900 chr6D 93.289 149 9 1 65 213 2680582 2680729 4.580000e-53 219.0
26 TraesCS5B01G191900 chr6D 90.411 73 5 2 2664 2734 160237517 160237589 8.060000e-16 95.3
27 TraesCS5B01G191900 chr2B 86.207 203 26 2 258 459 676011298 676011499 4.580000e-53 219.0
28 TraesCS5B01G191900 chr2B 85.167 209 29 2 257 464 55824265 55824472 2.130000e-51 213.0
29 TraesCS5B01G191900 chr4B 85.854 205 27 2 261 464 213082466 213082669 1.650000e-52 217.0
30 TraesCS5B01G191900 chr4B 85.507 207 27 3 257 460 622110946 622110740 2.130000e-51 213.0
31 TraesCS5B01G191900 chr4A 88.268 179 21 0 466 644 148142543 148142721 5.930000e-52 215.0
32 TraesCS5B01G191900 chr4A 87.324 71 8 1 2664 2734 435627697 435627766 2.260000e-11 80.5
33 TraesCS5B01G191900 chr2A 89.759 166 17 0 480 645 378015912 378016077 2.130000e-51 213.0
34 TraesCS5B01G191900 chr2A 87.432 183 19 4 471 651 31878231 31878411 9.920000e-50 207.0
35 TraesCS5B01G191900 chr1A 85.507 207 27 3 257 462 256413183 256413387 2.130000e-51 213.0
36 TraesCS5B01G191900 chr3B 85.167 209 28 3 262 468 795599228 795599435 7.670000e-51 211.0
37 TraesCS5B01G191900 chr7A 92.857 70 4 1 2664 2732 20717885 20717816 1.730000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G191900 chr5B 345346655 345349388 2733 False 5049.000000 5049 100.000000 1 2734 1 chr5B.!!$F2 2733
1 TraesCS5B01G191900 chr5A 395758791 395761129 2338 True 838.333333 1829 91.812667 207 2437 3 chr5A.!!$R2 2230
2 TraesCS5B01G191900 chr5D 302351996 302353431 1435 False 931.500000 1500 89.881000 827 2518 2 chr5D.!!$F1 1691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
91 92 0.033796 AATGTACTCCCTCCGTCCGA 60.034 55.0 0.0 0.0 0.0 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 2218 1.003116 GTGCTATCAAATGAGCCGCTG 60.003 52.381 0.0 0.0 37.94 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.885494 AATTTCGGATTTTGAGAAACATTTCA 57.115 26.923 7.10 0.00 39.61 2.69
36 37 8.885494 ATTTCGGATTTTGAGAAACATTTCAA 57.115 26.923 7.10 0.00 39.61 2.69
37 38 8.709386 TTTCGGATTTTGAGAAACATTTCAAA 57.291 26.923 7.10 0.00 40.46 2.69
81 82 9.051679 TGTTATAATACATGTGCAATGTACTCC 57.948 33.333 18.00 8.55 37.33 3.85
82 83 8.504005 GTTATAATACATGTGCAATGTACTCCC 58.496 37.037 18.00 6.66 37.33 4.30
83 84 4.778213 ATACATGTGCAATGTACTCCCT 57.222 40.909 18.00 5.57 37.33 4.20
84 85 2.991250 ACATGTGCAATGTACTCCCTC 58.009 47.619 0.00 0.00 0.00 4.30
85 86 2.292267 CATGTGCAATGTACTCCCTCC 58.708 52.381 2.75 0.00 0.00 4.30
86 87 0.249120 TGTGCAATGTACTCCCTCCG 59.751 55.000 2.75 0.00 0.00 4.63
87 88 0.249398 GTGCAATGTACTCCCTCCGT 59.751 55.000 0.00 0.00 0.00 4.69
88 89 0.535335 TGCAATGTACTCCCTCCGTC 59.465 55.000 0.00 0.00 0.00 4.79
89 90 0.179081 GCAATGTACTCCCTCCGTCC 60.179 60.000 0.00 0.00 0.00 4.79
90 91 0.102481 CAATGTACTCCCTCCGTCCG 59.898 60.000 0.00 0.00 0.00 4.79
91 92 0.033796 AATGTACTCCCTCCGTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
92 93 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
93 94 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
94 95 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
95 96 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
96 97 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
97 98 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
98 99 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
99 100 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
100 101 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
101 102 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
102 103 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
103 104 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
104 105 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
105 106 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
106 107 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
107 108 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
108 109 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
109 110 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
110 111 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
111 112 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
112 113 8.020819 GTCCGAAAATACTTGTCATCAAAATGA 58.979 33.333 0.00 0.00 39.63 2.57
113 114 8.572185 TCCGAAAATACTTGTCATCAAAATGAA 58.428 29.630 0.00 0.00 43.42 2.57
114 115 9.357652 CCGAAAATACTTGTCATCAAAATGAAT 57.642 29.630 0.00 0.00 43.42 2.57
122 123 8.096414 ACTTGTCATCAAAATGAATAAAAGGGG 58.904 33.333 0.00 0.00 43.42 4.79
123 124 7.789202 TGTCATCAAAATGAATAAAAGGGGA 57.211 32.000 0.00 0.00 43.42 4.81
124 125 8.378115 TGTCATCAAAATGAATAAAAGGGGAT 57.622 30.769 0.00 0.00 43.42 3.85
125 126 8.259411 TGTCATCAAAATGAATAAAAGGGGATG 58.741 33.333 0.00 0.00 43.42 3.51
126 127 8.260114 GTCATCAAAATGAATAAAAGGGGATGT 58.740 33.333 0.00 0.00 43.42 3.06
127 128 9.486123 TCATCAAAATGAATAAAAGGGGATGTA 57.514 29.630 0.00 0.00 38.97 2.29
130 131 9.713684 TCAAAATGAATAAAAGGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
136 137 9.170890 TGAATAAAAGGGGATGTATCTAGATGT 57.829 33.333 15.79 1.25 0.00 3.06
144 145 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
166 167 9.886132 TTAGTTCTAGATACATCCCTTTTTGTC 57.114 33.333 0.00 0.00 0.00 3.18
167 168 7.339482 AGTTCTAGATACATCCCTTTTTGTCC 58.661 38.462 0.00 0.00 0.00 4.02
168 169 6.884472 TCTAGATACATCCCTTTTTGTCCA 57.116 37.500 0.00 0.00 0.00 4.02
169 170 7.451731 TCTAGATACATCCCTTTTTGTCCAT 57.548 36.000 0.00 0.00 0.00 3.41
170 171 7.872138 TCTAGATACATCCCTTTTTGTCCATT 58.128 34.615 0.00 0.00 0.00 3.16
171 172 8.336235 TCTAGATACATCCCTTTTTGTCCATTT 58.664 33.333 0.00 0.00 0.00 2.32
172 173 7.797121 AGATACATCCCTTTTTGTCCATTTT 57.203 32.000 0.00 0.00 0.00 1.82
173 174 7.614494 AGATACATCCCTTTTTGTCCATTTTG 58.386 34.615 0.00 0.00 0.00 2.44
174 175 5.885449 ACATCCCTTTTTGTCCATTTTGA 57.115 34.783 0.00 0.00 0.00 2.69
175 176 6.438186 ACATCCCTTTTTGTCCATTTTGAT 57.562 33.333 0.00 0.00 0.00 2.57
176 177 6.232692 ACATCCCTTTTTGTCCATTTTGATG 58.767 36.000 0.00 0.00 33.80 3.07
177 178 6.043012 ACATCCCTTTTTGTCCATTTTGATGA 59.957 34.615 0.00 0.00 32.39 2.92
178 179 5.852827 TCCCTTTTTGTCCATTTTGATGAC 58.147 37.500 0.00 0.00 0.00 3.06
179 180 5.365025 TCCCTTTTTGTCCATTTTGATGACA 59.635 36.000 0.00 0.00 0.00 3.58
180 181 6.054295 CCCTTTTTGTCCATTTTGATGACAA 58.946 36.000 0.00 0.00 34.47 3.18
181 182 6.203338 CCCTTTTTGTCCATTTTGATGACAAG 59.797 38.462 0.00 0.00 37.13 3.16
182 183 6.762661 CCTTTTTGTCCATTTTGATGACAAGT 59.237 34.615 0.00 0.00 37.13 3.16
183 184 7.925483 CCTTTTTGTCCATTTTGATGACAAGTA 59.075 33.333 0.00 0.00 37.13 2.24
184 185 9.480053 CTTTTTGTCCATTTTGATGACAAGTAT 57.520 29.630 0.00 0.00 37.13 2.12
185 186 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
186 187 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
187 188 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
188 189 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
189 190 7.807433 TGTCCATTTTGATGACAAGTATTTTCG 59.193 33.333 0.00 0.00 37.32 3.46
190 191 7.273381 GTCCATTTTGATGACAAGTATTTTCGG 59.727 37.037 0.00 0.00 37.32 4.30
191 192 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
192 193 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
193 194 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
194 195 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
195 196 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
196 197 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
197 198 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
198 199 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
199 200 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
200 201 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
201 202 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
202 203 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
203 204 1.856629 TTTTCGGACGGAGGGAGTAT 58.143 50.000 0.00 0.00 0.00 2.12
204 205 1.856629 TTTCGGACGGAGGGAGTATT 58.143 50.000 0.00 0.00 0.00 1.89
205 206 1.396653 TTCGGACGGAGGGAGTATTC 58.603 55.000 0.00 0.00 0.00 1.75
223 224 8.749354 GGAGTATTCTGTTTGGATTGGTATTTT 58.251 33.333 0.00 0.00 0.00 1.82
252 253 5.671493 GTGCAACAAGTCCTATGGTACTAT 58.329 41.667 0.00 0.00 36.32 2.12
506 507 9.753674 ACTTCCTCATTTCCTAAATATTTGTCA 57.246 29.630 11.05 0.00 0.00 3.58
641 642 9.908152 AAGACAAATATTTAAAAACGAAGGGAG 57.092 29.630 0.00 0.00 0.00 4.30
642 643 9.074576 AGACAAATATTTAAAAACGAAGGGAGT 57.925 29.630 0.00 0.00 0.00 3.85
655 656 5.855045 ACGAAGGGAGTATATTTCATGGTC 58.145 41.667 0.00 0.00 0.00 4.02
664 665 7.227512 GGAGTATATTTCATGGTCCACTTCAAG 59.772 40.741 0.00 0.00 0.00 3.02
688 689 1.699083 TCAAGACAGACATTGGGAGCA 59.301 47.619 0.00 0.00 0.00 4.26
700 701 2.677848 GGAGCAGGTTTCCCCCTC 59.322 66.667 0.00 0.00 30.33 4.30
703 704 0.620700 GAGCAGGTTTCCCCCTCCTA 60.621 60.000 0.00 0.00 30.33 2.94
725 726 0.243636 CCGGTCAACCCTTTGATTGC 59.756 55.000 0.00 0.00 43.72 3.56
728 729 2.238521 GGTCAACCCTTTGATTGCTCA 58.761 47.619 0.00 0.00 43.72 4.26
729 730 2.229784 GGTCAACCCTTTGATTGCTCAG 59.770 50.000 0.00 0.00 43.72 3.35
730 731 1.888512 TCAACCCTTTGATTGCTCAGC 59.111 47.619 0.00 0.00 36.79 4.26
731 732 0.883833 AACCCTTTGATTGCTCAGCG 59.116 50.000 0.00 0.00 31.68 5.18
732 733 1.138247 CCCTTTGATTGCTCAGCGC 59.862 57.895 0.00 0.00 39.77 5.92
752 753 4.728058 GCAGAGCCACTCGATCTC 57.272 61.111 0.00 0.00 35.36 2.75
753 754 1.812525 GCAGAGCCACTCGATCTCA 59.187 57.895 0.00 0.00 35.36 3.27
755 756 1.202510 GCAGAGCCACTCGATCTCAAT 60.203 52.381 0.00 0.00 35.36 2.57
756 757 2.741612 CAGAGCCACTCGATCTCAATC 58.258 52.381 0.00 0.00 35.36 2.67
757 758 2.100418 CAGAGCCACTCGATCTCAATCA 59.900 50.000 0.00 0.00 35.36 2.57
758 759 2.100584 AGAGCCACTCGATCTCAATCAC 59.899 50.000 0.00 0.00 35.36 3.06
760 761 1.929836 GCCACTCGATCTCAATCACAC 59.070 52.381 0.00 0.00 31.76 3.82
762 763 2.926200 CCACTCGATCTCAATCACACAC 59.074 50.000 0.00 0.00 31.76 3.82
763 764 2.595977 CACTCGATCTCAATCACACACG 59.404 50.000 0.00 0.00 31.76 4.49
764 765 2.488153 ACTCGATCTCAATCACACACGA 59.512 45.455 0.00 0.00 31.76 4.35
767 768 3.687698 TCGATCTCAATCACACACGAGTA 59.312 43.478 0.00 0.00 31.76 2.59
768 769 3.786576 CGATCTCAATCACACACGAGTAC 59.213 47.826 0.00 0.00 31.76 2.73
771 772 5.292671 TCTCAATCACACACGAGTACTAC 57.707 43.478 0.00 0.00 0.00 2.73
772 773 4.074466 TCAATCACACACGAGTACTACG 57.926 45.455 0.00 4.23 0.00 3.51
773 774 3.747529 TCAATCACACACGAGTACTACGA 59.252 43.478 17.67 0.00 34.70 3.43
774 775 4.213906 TCAATCACACACGAGTACTACGAA 59.786 41.667 17.67 1.80 34.70 3.85
776 777 4.074466 TCACACACGAGTACTACGAATG 57.926 45.455 17.67 15.89 34.70 2.67
779 780 4.729086 CACACACGAGTACTACGAATGATC 59.271 45.833 17.67 0.00 34.70 2.92
822 971 1.867698 GCTATCTCACAGGCTCGCTTC 60.868 57.143 0.00 0.00 0.00 3.86
852 1001 4.254492 AGTTTCTTATTCTTCCGCTGTCC 58.746 43.478 0.00 0.00 0.00 4.02
859 1008 0.394488 TCTTCCGCTGTCCTCTCGAT 60.394 55.000 0.00 0.00 0.00 3.59
968 1121 3.047877 GGGCACTTCCGTGGTTCG 61.048 66.667 0.00 0.00 41.51 3.95
1023 1176 4.719369 ACCGACGACTTGGAGCGC 62.719 66.667 0.00 0.00 0.00 5.92
1048 1201 2.438434 CCGTGATCCAAGCACCCC 60.438 66.667 0.00 0.00 32.74 4.95
1049 1202 2.819595 CGTGATCCAAGCACCCCG 60.820 66.667 0.00 0.00 32.74 5.73
1051 1204 1.002624 GTGATCCAAGCACCCCGAA 60.003 57.895 0.00 0.00 0.00 4.30
1052 1205 1.026718 GTGATCCAAGCACCCCGAAG 61.027 60.000 0.00 0.00 0.00 3.79
1053 1206 2.044946 ATCCAAGCACCCCGAAGC 60.045 61.111 0.00 0.00 0.00 3.86
1054 1207 3.976701 ATCCAAGCACCCCGAAGCG 62.977 63.158 0.00 0.00 35.48 4.68
1124 1305 0.336737 AGGACCTGGTCGAGATCCTT 59.663 55.000 19.98 0.00 36.33 3.36
1656 1849 2.474526 CGATCACGTGAACATGGCTTTC 60.475 50.000 24.13 10.97 34.56 2.62
1773 1969 5.954296 AATCCTGTCAGAGAAACAATGTG 57.046 39.130 0.00 0.00 0.00 3.21
1804 2000 1.624487 TACATACTCACGTTGCAGCG 58.376 50.000 21.95 21.95 37.94 5.18
1823 2019 1.202177 CGAATTATGTGGTGTGGCAGC 60.202 52.381 0.00 0.00 0.00 5.25
1842 2039 5.008118 GGCAGCATGAAATTTACTACTCCTC 59.992 44.000 0.00 0.00 39.69 3.71
1915 2117 5.278169 CGATATGCTGCTGCCTAAAAATCTT 60.278 40.000 13.47 0.00 38.71 2.40
1916 2118 3.855689 TGCTGCTGCCTAAAAATCTTC 57.144 42.857 13.47 0.00 38.71 2.87
1941 2143 9.676861 TCTTGTGAATCAACATAAGATCAGAAT 57.323 29.630 0.00 0.00 40.89 2.40
1962 2175 2.270352 ATGTGTCTCTTCCCGCAAAA 57.730 45.000 0.00 0.00 0.00 2.44
2010 2226 1.005340 CAGAAATCAGACAGCGGCTC 58.995 55.000 0.00 0.00 0.00 4.70
2024 2240 0.947244 CGGCTCATTTGATAGCACCC 59.053 55.000 0.00 0.00 40.61 4.61
2036 2252 4.102113 GCACCCAGCCAAGATGTT 57.898 55.556 0.00 0.00 37.23 2.71
2044 2260 4.837860 ACCCAGCCAAGATGTTAAATTTCA 59.162 37.500 0.00 0.00 0.00 2.69
2054 2270 7.530426 AGATGTTAAATTTCAAACCAGAGCT 57.470 32.000 0.00 0.00 0.00 4.09
2066 2282 3.577805 ACCAGAGCTAACAAACCAAGT 57.422 42.857 0.00 0.00 0.00 3.16
2109 2332 9.395707 CAAGACGGTAACATCTCTTATATACAC 57.604 37.037 0.00 0.00 0.00 2.90
2129 2352 2.812011 ACTCAAACATGGGCTTTACGAC 59.188 45.455 0.00 0.00 0.00 4.34
2137 2452 3.874392 TGGGCTTTACGACCTAGTAAC 57.126 47.619 0.00 0.00 43.44 2.50
2142 2457 4.624452 GGCTTTACGACCTAGTAACACTTG 59.376 45.833 0.00 0.00 36.44 3.16
2207 2524 8.408043 TCATCAAACCAACATAAAGACTGATT 57.592 30.769 0.00 0.00 0.00 2.57
2208 2525 8.514594 TCATCAAACCAACATAAAGACTGATTC 58.485 33.333 0.00 0.00 0.00 2.52
2209 2526 7.815840 TCAAACCAACATAAAGACTGATTCA 57.184 32.000 0.00 0.00 0.00 2.57
2210 2527 8.408043 TCAAACCAACATAAAGACTGATTCAT 57.592 30.769 0.00 0.00 0.00 2.57
2211 2528 8.298854 TCAAACCAACATAAAGACTGATTCATG 58.701 33.333 0.00 0.00 0.00 3.07
2212 2529 7.765695 AACCAACATAAAGACTGATTCATGT 57.234 32.000 0.00 0.00 0.00 3.21
2213 2530 7.383102 ACCAACATAAAGACTGATTCATGTC 57.617 36.000 0.00 7.69 0.00 3.06
2214 2531 6.375455 ACCAACATAAAGACTGATTCATGTCC 59.625 38.462 10.65 0.00 34.02 4.02
2215 2532 6.375174 CCAACATAAAGACTGATTCATGTCCA 59.625 38.462 10.65 0.00 34.02 4.02
2216 2533 7.094248 CCAACATAAAGACTGATTCATGTCCAA 60.094 37.037 10.65 0.00 34.02 3.53
2217 2534 8.298854 CAACATAAAGACTGATTCATGTCCAAA 58.701 33.333 10.65 0.00 34.02 3.28
2218 2535 8.408043 ACATAAAGACTGATTCATGTCCAAAA 57.592 30.769 10.65 0.00 34.02 2.44
2219 2536 8.859090 ACATAAAGACTGATTCATGTCCAAAAA 58.141 29.630 10.65 0.00 34.02 1.94
2262 2581 3.723260 TCGTCACACTGACTGCAAATTA 58.277 40.909 1.14 0.00 44.85 1.40
2285 2604 2.055042 CCCGTCAGTCCCTCTCAGG 61.055 68.421 0.00 0.00 34.30 3.86
2296 2615 2.978978 TCCCTCTCAGGTTGTGATCAAA 59.021 45.455 0.00 0.00 35.20 2.69
2297 2616 3.008375 TCCCTCTCAGGTTGTGATCAAAG 59.992 47.826 0.00 0.00 35.20 2.77
2303 2622 3.390967 TCAGGTTGTGATCAAAGGAGACA 59.609 43.478 0.00 0.00 35.20 3.41
2351 2673 2.939103 GCAATCTTCGACTGCTACCATT 59.061 45.455 0.00 0.00 31.75 3.16
2440 2784 0.830444 TGCGCCCCGTAGATAGGATT 60.830 55.000 4.18 0.00 0.00 3.01
2444 2788 2.683867 CGCCCCGTAGATAGGATTAGAG 59.316 54.545 0.00 0.00 0.00 2.43
2502 2846 3.703001 ACCAGTGGGAATGTTCTACAG 57.297 47.619 15.21 0.00 38.05 2.74
2506 2850 4.466370 CCAGTGGGAATGTTCTACAGAGTA 59.534 45.833 0.00 0.00 35.59 2.59
2507 2851 5.394663 CCAGTGGGAATGTTCTACAGAGTAG 60.395 48.000 0.00 0.00 35.59 2.57
2518 2862 5.932619 TCTACAGAGTAGCATTGCCTTAA 57.067 39.130 4.70 0.00 0.00 1.85
2519 2863 5.907207 TCTACAGAGTAGCATTGCCTTAAG 58.093 41.667 4.70 0.00 0.00 1.85
2520 2864 4.826274 ACAGAGTAGCATTGCCTTAAGA 57.174 40.909 3.36 0.00 0.00 2.10
2521 2865 4.764172 ACAGAGTAGCATTGCCTTAAGAG 58.236 43.478 3.36 0.00 0.00 2.85
2522 2866 4.223923 ACAGAGTAGCATTGCCTTAAGAGT 59.776 41.667 3.36 0.00 0.00 3.24
2523 2867 5.181748 CAGAGTAGCATTGCCTTAAGAGTT 58.818 41.667 3.36 0.00 0.00 3.01
2524 2868 6.070767 ACAGAGTAGCATTGCCTTAAGAGTTA 60.071 38.462 3.36 0.00 0.00 2.24
2525 2869 6.818644 CAGAGTAGCATTGCCTTAAGAGTTAA 59.181 38.462 3.36 0.00 0.00 2.01
2526 2870 7.010923 CAGAGTAGCATTGCCTTAAGAGTTAAG 59.989 40.741 3.36 0.23 41.75 1.85
2527 2871 6.947464 AGTAGCATTGCCTTAAGAGTTAAGA 58.053 36.000 3.36 0.00 44.19 2.10
2528 2872 7.569240 AGTAGCATTGCCTTAAGAGTTAAGAT 58.431 34.615 3.36 0.00 44.19 2.40
2529 2873 6.690194 AGCATTGCCTTAAGAGTTAAGATG 57.310 37.500 3.36 5.50 44.19 2.90
2530 2874 6.418101 AGCATTGCCTTAAGAGTTAAGATGA 58.582 36.000 3.36 0.00 44.19 2.92
2531 2875 6.886459 AGCATTGCCTTAAGAGTTAAGATGAA 59.114 34.615 3.36 0.00 44.19 2.57
2532 2876 7.394359 AGCATTGCCTTAAGAGTTAAGATGAAA 59.606 33.333 3.36 0.00 44.19 2.69
2533 2877 8.028938 GCATTGCCTTAAGAGTTAAGATGAAAA 58.971 33.333 3.36 0.00 44.19 2.29
2534 2878 9.912634 CATTGCCTTAAGAGTTAAGATGAAAAA 57.087 29.630 3.36 0.00 44.19 1.94
2559 2903 2.828145 GAGGATCTGCTGCTCCCC 59.172 66.667 9.60 0.00 36.38 4.81
2560 2904 2.041762 AGGATCTGCTGCTCCCCA 59.958 61.111 9.60 0.00 31.49 4.96
2561 2905 2.191641 GGATCTGCTGCTCCCCAC 59.808 66.667 0.00 0.00 0.00 4.61
2562 2906 2.673200 GGATCTGCTGCTCCCCACA 61.673 63.158 0.00 0.00 0.00 4.17
2563 2907 1.530771 GATCTGCTGCTCCCCACAT 59.469 57.895 0.00 0.00 0.00 3.21
2564 2908 0.761187 GATCTGCTGCTCCCCACATA 59.239 55.000 0.00 0.00 0.00 2.29
2565 2909 1.141657 GATCTGCTGCTCCCCACATAA 59.858 52.381 0.00 0.00 0.00 1.90
2566 2910 0.991146 TCTGCTGCTCCCCACATAAA 59.009 50.000 0.00 0.00 0.00 1.40
2567 2911 1.354031 TCTGCTGCTCCCCACATAAAA 59.646 47.619 0.00 0.00 0.00 1.52
2568 2912 1.474077 CTGCTGCTCCCCACATAAAAC 59.526 52.381 0.00 0.00 0.00 2.43
2569 2913 1.202989 TGCTGCTCCCCACATAAAACA 60.203 47.619 0.00 0.00 0.00 2.83
2570 2914 1.474077 GCTGCTCCCCACATAAAACAG 59.526 52.381 0.00 0.00 0.00 3.16
2571 2915 2.879756 GCTGCTCCCCACATAAAACAGA 60.880 50.000 0.00 0.00 0.00 3.41
2572 2916 3.012518 CTGCTCCCCACATAAAACAGAG 58.987 50.000 0.00 0.00 0.00 3.35
2573 2917 2.290896 TGCTCCCCACATAAAACAGAGG 60.291 50.000 0.00 0.00 0.00 3.69
2574 2918 2.290960 GCTCCCCACATAAAACAGAGGT 60.291 50.000 0.00 0.00 0.00 3.85
2575 2919 3.054655 GCTCCCCACATAAAACAGAGGTA 60.055 47.826 0.00 0.00 0.00 3.08
2576 2920 4.770795 CTCCCCACATAAAACAGAGGTAG 58.229 47.826 0.00 0.00 0.00 3.18
2577 2921 3.054655 TCCCCACATAAAACAGAGGTAGC 60.055 47.826 0.00 0.00 0.00 3.58
2578 2922 3.054361 CCCCACATAAAACAGAGGTAGCT 60.054 47.826 0.00 0.00 0.00 3.32
2579 2923 3.941483 CCCACATAAAACAGAGGTAGCTG 59.059 47.826 0.00 0.00 41.63 4.24
2580 2924 3.375299 CCACATAAAACAGAGGTAGCTGC 59.625 47.826 0.00 0.00 39.51 5.25
2581 2925 4.256920 CACATAAAACAGAGGTAGCTGCT 58.743 43.478 7.57 7.57 39.51 4.24
2582 2926 5.419542 CACATAAAACAGAGGTAGCTGCTA 58.580 41.667 5.02 5.02 39.51 3.49
2583 2927 5.874810 CACATAAAACAGAGGTAGCTGCTAA 59.125 40.000 11.57 0.00 39.51 3.09
2584 2928 6.540189 CACATAAAACAGAGGTAGCTGCTAAT 59.460 38.462 11.57 3.00 39.51 1.73
2585 2929 7.066284 CACATAAAACAGAGGTAGCTGCTAATT 59.934 37.037 11.57 2.29 39.51 1.40
2586 2930 7.611855 ACATAAAACAGAGGTAGCTGCTAATTT 59.388 33.333 11.57 6.99 39.51 1.82
2587 2931 9.109393 CATAAAACAGAGGTAGCTGCTAATTTA 57.891 33.333 11.57 8.66 39.51 1.40
2588 2932 7.996098 AAAACAGAGGTAGCTGCTAATTTAA 57.004 32.000 11.57 0.00 39.51 1.52
2589 2933 6.986904 AACAGAGGTAGCTGCTAATTTAAC 57.013 37.500 11.57 0.00 39.51 2.01
2590 2934 6.049955 ACAGAGGTAGCTGCTAATTTAACA 57.950 37.500 11.57 0.00 39.51 2.41
2591 2935 6.109359 ACAGAGGTAGCTGCTAATTTAACAG 58.891 40.000 11.57 3.01 39.51 3.16
2592 2936 6.109359 CAGAGGTAGCTGCTAATTTAACAGT 58.891 40.000 11.57 0.00 33.87 3.55
2593 2937 7.093465 ACAGAGGTAGCTGCTAATTTAACAGTA 60.093 37.037 11.57 0.00 39.51 2.74
2594 2938 7.436673 CAGAGGTAGCTGCTAATTTAACAGTAG 59.563 40.741 11.57 0.00 33.87 2.57
2595 2939 7.124448 AGAGGTAGCTGCTAATTTAACAGTAGT 59.876 37.037 11.57 0.00 33.87 2.73
2596 2940 7.042335 AGGTAGCTGCTAATTTAACAGTAGTG 58.958 38.462 11.57 0.00 33.87 2.74
2597 2941 6.817140 GGTAGCTGCTAATTTAACAGTAGTGT 59.183 38.462 11.57 0.00 39.19 3.55
2598 2942 6.969828 AGCTGCTAATTTAACAGTAGTGTC 57.030 37.500 0.00 0.00 35.08 3.67
2599 2943 6.464222 AGCTGCTAATTTAACAGTAGTGTCA 58.536 36.000 0.00 0.00 35.08 3.58
2600 2944 6.369065 AGCTGCTAATTTAACAGTAGTGTCAC 59.631 38.462 0.00 0.00 35.08 3.67
2601 2945 6.402226 GCTGCTAATTTAACAGTAGTGTCACC 60.402 42.308 3.07 0.00 35.08 4.02
2602 2946 6.526526 TGCTAATTTAACAGTAGTGTCACCA 58.473 36.000 3.07 0.00 35.08 4.17
2603 2947 6.993308 TGCTAATTTAACAGTAGTGTCACCAA 59.007 34.615 3.07 0.00 35.08 3.67
2604 2948 7.499563 TGCTAATTTAACAGTAGTGTCACCAAA 59.500 33.333 3.07 3.41 35.08 3.28
2605 2949 8.347035 GCTAATTTAACAGTAGTGTCACCAAAA 58.653 33.333 3.07 1.46 35.08 2.44
2625 2969 3.668596 AAAACCGAGACGTTCACTTTG 57.331 42.857 0.00 0.00 0.00 2.77
2626 2970 2.304751 AACCGAGACGTTCACTTTGT 57.695 45.000 0.00 0.00 0.00 2.83
2627 2971 2.304751 ACCGAGACGTTCACTTTGTT 57.695 45.000 0.00 0.00 0.00 2.83
2628 2972 2.624636 ACCGAGACGTTCACTTTGTTT 58.375 42.857 0.00 0.00 0.00 2.83
2629 2973 3.004862 ACCGAGACGTTCACTTTGTTTT 58.995 40.909 0.00 0.00 0.00 2.43
2630 2974 3.437741 ACCGAGACGTTCACTTTGTTTTT 59.562 39.130 0.00 0.00 0.00 1.94
2631 2975 4.630940 ACCGAGACGTTCACTTTGTTTTTA 59.369 37.500 0.00 0.00 0.00 1.52
2632 2976 4.959757 CCGAGACGTTCACTTTGTTTTTAC 59.040 41.667 0.00 0.00 0.00 2.01
2633 2977 5.446206 CCGAGACGTTCACTTTGTTTTTACA 60.446 40.000 0.00 0.00 0.00 2.41
2634 2978 5.446899 CGAGACGTTCACTTTGTTTTTACAC 59.553 40.000 0.00 0.00 0.00 2.90
2635 2979 6.490566 AGACGTTCACTTTGTTTTTACACT 57.509 33.333 0.00 0.00 0.00 3.55
2636 2980 6.540205 AGACGTTCACTTTGTTTTTACACTC 58.460 36.000 0.00 0.00 0.00 3.51
2637 2981 5.318349 ACGTTCACTTTGTTTTTACACTCG 58.682 37.500 0.00 0.00 0.00 4.18
2638 2982 5.120519 ACGTTCACTTTGTTTTTACACTCGA 59.879 36.000 0.00 0.00 0.00 4.04
2639 2983 6.016718 CGTTCACTTTGTTTTTACACTCGAA 58.983 36.000 0.00 0.00 0.00 3.71
2640 2984 6.022794 CGTTCACTTTGTTTTTACACTCGAAC 60.023 38.462 0.00 0.00 0.00 3.95
2641 2985 6.483385 TCACTTTGTTTTTACACTCGAACA 57.517 33.333 0.00 0.00 0.00 3.18
2642 2986 7.079182 TCACTTTGTTTTTACACTCGAACAT 57.921 32.000 0.00 0.00 32.64 2.71
2643 2987 6.964370 TCACTTTGTTTTTACACTCGAACATG 59.036 34.615 0.00 0.00 32.64 3.21
2644 2988 6.196353 CACTTTGTTTTTACACTCGAACATGG 59.804 38.462 0.00 0.00 32.64 3.66
2645 2989 4.822036 TGTTTTTACACTCGAACATGGG 57.178 40.909 0.00 0.00 0.00 4.00
2646 2990 3.003897 TGTTTTTACACTCGAACATGGGC 59.996 43.478 0.00 0.00 0.00 5.36
2647 2991 2.851263 TTTACACTCGAACATGGGCT 57.149 45.000 0.00 0.00 0.00 5.19
2648 2992 2.851263 TTACACTCGAACATGGGCTT 57.149 45.000 0.00 0.00 0.00 4.35
2649 2993 2.851263 TACACTCGAACATGGGCTTT 57.149 45.000 0.00 0.00 0.00 3.51
2650 2994 2.851263 ACACTCGAACATGGGCTTTA 57.149 45.000 0.00 0.00 0.00 1.85
2651 2995 2.423577 ACACTCGAACATGGGCTTTAC 58.576 47.619 0.00 0.00 0.00 2.01
2652 2996 1.393539 CACTCGAACATGGGCTTTACG 59.606 52.381 0.00 0.00 0.00 3.18
2653 2997 1.274167 ACTCGAACATGGGCTTTACGA 59.726 47.619 0.00 0.00 0.00 3.43
2654 2998 1.927174 CTCGAACATGGGCTTTACGAG 59.073 52.381 0.00 0.00 39.32 4.18
2668 3012 5.347012 CTTTACGAGCTACTAGTAGAGGC 57.653 47.826 30.09 17.48 35.21 4.70
2669 3013 1.868469 ACGAGCTACTAGTAGAGGCG 58.132 55.000 30.09 27.02 35.21 5.52
2670 3014 1.411977 ACGAGCTACTAGTAGAGGCGA 59.588 52.381 30.09 0.00 35.21 5.54
2671 3015 2.158986 ACGAGCTACTAGTAGAGGCGAA 60.159 50.000 30.09 0.00 35.21 4.70
2672 3016 2.871022 CGAGCTACTAGTAGAGGCGAAA 59.129 50.000 30.09 0.00 35.21 3.46
2673 3017 3.311871 CGAGCTACTAGTAGAGGCGAAAA 59.688 47.826 30.09 0.00 35.21 2.29
2674 3018 4.600032 GAGCTACTAGTAGAGGCGAAAAC 58.400 47.826 30.09 11.27 35.21 2.43
2675 3019 4.015084 AGCTACTAGTAGAGGCGAAAACA 58.985 43.478 30.09 0.00 35.21 2.83
2676 3020 4.096682 AGCTACTAGTAGAGGCGAAAACAG 59.903 45.833 30.09 5.19 35.21 3.16
2677 3021 3.870633 ACTAGTAGAGGCGAAAACAGG 57.129 47.619 3.59 0.00 0.00 4.00
2678 3022 3.428532 ACTAGTAGAGGCGAAAACAGGA 58.571 45.455 3.59 0.00 0.00 3.86
2679 3023 4.024670 ACTAGTAGAGGCGAAAACAGGAT 58.975 43.478 3.59 0.00 0.00 3.24
2680 3024 3.983044 AGTAGAGGCGAAAACAGGATT 57.017 42.857 0.00 0.00 0.00 3.01
2681 3025 4.287766 AGTAGAGGCGAAAACAGGATTT 57.712 40.909 0.00 0.00 0.00 2.17
2682 3026 4.254492 AGTAGAGGCGAAAACAGGATTTC 58.746 43.478 0.00 0.00 36.24 2.17
2683 3027 3.425162 AGAGGCGAAAACAGGATTTCT 57.575 42.857 0.00 0.00 37.20 2.52
2684 3028 3.339141 AGAGGCGAAAACAGGATTTCTC 58.661 45.455 0.00 0.00 37.20 2.87
2685 3029 3.074412 GAGGCGAAAACAGGATTTCTCA 58.926 45.455 0.00 0.00 37.20 3.27
2686 3030 3.486383 AGGCGAAAACAGGATTTCTCAA 58.514 40.909 0.00 0.00 37.20 3.02
2687 3031 3.888930 AGGCGAAAACAGGATTTCTCAAA 59.111 39.130 0.00 0.00 37.20 2.69
2688 3032 4.022849 AGGCGAAAACAGGATTTCTCAAAG 60.023 41.667 0.00 0.00 37.20 2.77
2689 3033 3.670523 GCGAAAACAGGATTTCTCAAAGC 59.329 43.478 0.00 0.00 37.20 3.51
2708 3052 3.195471 GCCTAGGGCTAAACCTAACTG 57.805 52.381 11.72 0.00 46.69 3.16
2709 3053 2.770232 GCCTAGGGCTAAACCTAACTGA 59.230 50.000 11.72 0.00 46.69 3.41
2710 3054 3.431905 GCCTAGGGCTAAACCTAACTGAC 60.432 52.174 11.72 0.00 46.69 3.51
2711 3055 4.031611 CCTAGGGCTAAACCTAACTGACT 58.968 47.826 0.00 0.00 42.32 3.41
2712 3056 5.206587 CCTAGGGCTAAACCTAACTGACTA 58.793 45.833 0.00 0.00 42.32 2.59
2713 3057 5.839606 CCTAGGGCTAAACCTAACTGACTAT 59.160 44.000 0.00 0.00 42.32 2.12
2714 3058 5.873146 AGGGCTAAACCTAACTGACTATC 57.127 43.478 0.00 0.00 39.65 2.08
2715 3059 5.530243 AGGGCTAAACCTAACTGACTATCT 58.470 41.667 0.00 0.00 39.65 1.98
2716 3060 6.680540 AGGGCTAAACCTAACTGACTATCTA 58.319 40.000 0.00 0.00 39.65 1.98
2717 3061 7.130775 AGGGCTAAACCTAACTGACTATCTAA 58.869 38.462 0.00 0.00 39.65 2.10
2718 3062 7.622479 AGGGCTAAACCTAACTGACTATCTAAA 59.378 37.037 0.00 0.00 39.65 1.85
2719 3063 8.262933 GGGCTAAACCTAACTGACTATCTAAAA 58.737 37.037 0.00 0.00 39.10 1.52
2720 3064 9.662947 GGCTAAACCTAACTGACTATCTAAAAA 57.337 33.333 0.00 0.00 34.51 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.323985 TGAAATGTTTCTCAAAATCCGAAATTT 57.676 25.926 6.99 0.00 38.02 1.82
10 11 8.885494 TGAAATGTTTCTCAAAATCCGAAATT 57.115 26.923 6.99 0.00 38.02 1.82
11 12 8.885494 TTGAAATGTTTCTCAAAATCCGAAAT 57.115 26.923 6.99 0.00 38.02 2.17
12 13 8.709386 TTTGAAATGTTTCTCAAAATCCGAAA 57.291 26.923 6.99 0.00 38.32 3.46
13 14 8.709386 TTTTGAAATGTTTCTCAAAATCCGAA 57.291 26.923 6.00 0.00 43.25 4.30
14 15 8.709386 TTTTTGAAATGTTTCTCAAAATCCGA 57.291 26.923 9.94 0.00 45.85 4.55
55 56 9.051679 GGAGTACATTGCACATGTATTATAACA 57.948 33.333 18.37 0.00 36.94 2.41
56 57 8.504005 GGGAGTACATTGCACATGTATTATAAC 58.496 37.037 18.37 11.01 36.94 1.89
57 58 8.436778 AGGGAGTACATTGCACATGTATTATAA 58.563 33.333 18.37 0.00 36.94 0.98
58 59 7.973402 AGGGAGTACATTGCACATGTATTATA 58.027 34.615 18.37 2.78 36.94 0.98
59 60 6.841601 AGGGAGTACATTGCACATGTATTAT 58.158 36.000 18.37 11.40 36.94 1.28
60 61 6.247229 AGGGAGTACATTGCACATGTATTA 57.753 37.500 18.37 3.31 36.94 0.98
61 62 5.116084 AGGGAGTACATTGCACATGTATT 57.884 39.130 18.37 15.73 36.94 1.89
62 63 4.444876 GGAGGGAGTACATTGCACATGTAT 60.445 45.833 18.37 11.23 36.94 2.29
63 64 3.118408 GGAGGGAGTACATTGCACATGTA 60.118 47.826 14.04 14.04 33.76 2.29
64 65 2.356125 GGAGGGAGTACATTGCACATGT 60.356 50.000 15.56 15.56 36.13 3.21
65 66 2.292267 GGAGGGAGTACATTGCACATG 58.708 52.381 0.00 7.16 0.00 3.21
66 67 1.134401 CGGAGGGAGTACATTGCACAT 60.134 52.381 0.00 0.00 0.00 3.21
67 68 0.249120 CGGAGGGAGTACATTGCACA 59.751 55.000 0.00 0.00 0.00 4.57
68 69 0.249398 ACGGAGGGAGTACATTGCAC 59.751 55.000 0.00 0.00 0.00 4.57
69 70 0.535335 GACGGAGGGAGTACATTGCA 59.465 55.000 0.00 0.00 0.00 4.08
70 71 0.179081 GGACGGAGGGAGTACATTGC 60.179 60.000 0.00 0.00 0.00 3.56
71 72 0.102481 CGGACGGAGGGAGTACATTG 59.898 60.000 0.00 0.00 0.00 2.82
72 73 0.033796 TCGGACGGAGGGAGTACATT 60.034 55.000 0.00 0.00 0.00 2.71
73 74 0.033796 TTCGGACGGAGGGAGTACAT 60.034 55.000 0.00 0.00 0.00 2.29
74 75 0.251297 TTTCGGACGGAGGGAGTACA 60.251 55.000 0.00 0.00 0.00 2.90
75 76 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
76 77 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
77 78 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
78 79 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
79 80 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
80 81 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
81 82 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
82 83 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
83 84 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
84 85 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
85 86 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
86 87 8.020819 TCATTTTGATGACAAGTATTTTCGGAC 58.979 33.333 0.00 0.00 37.32 4.79
87 88 8.105097 TCATTTTGATGACAAGTATTTTCGGA 57.895 30.769 0.00 0.00 37.32 4.55
88 89 8.741101 TTCATTTTGATGACAAGTATTTTCGG 57.259 30.769 0.00 0.00 37.32 4.30
96 97 8.096414 CCCCTTTTATTCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
97 98 8.313292 TCCCCTTTTATTCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
98 99 8.200024 TCCCCTTTTATTCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
99 100 7.789202 TCCCCTTTTATTCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
100 101 8.260114 ACATCCCCTTTTATTCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
101 102 8.378115 ACATCCCCTTTTATTCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
104 105 9.713684 AGATACATCCCCTTTTATTCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
110 111 9.170890 ACATCTAGATACATCCCCTTTTATTCA 57.829 33.333 4.54 0.00 0.00 2.57
118 119 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
140 141 9.886132 GACAAAAAGGGATGTATCTAGAACTAA 57.114 33.333 0.00 0.00 0.00 2.24
141 142 8.483758 GGACAAAAAGGGATGTATCTAGAACTA 58.516 37.037 0.00 0.00 0.00 2.24
142 143 7.037586 TGGACAAAAAGGGATGTATCTAGAACT 60.038 37.037 0.00 0.00 0.00 3.01
143 144 7.110155 TGGACAAAAAGGGATGTATCTAGAAC 58.890 38.462 0.00 0.00 0.00 3.01
144 145 7.265599 TGGACAAAAAGGGATGTATCTAGAA 57.734 36.000 0.00 0.00 0.00 2.10
145 146 6.884472 TGGACAAAAAGGGATGTATCTAGA 57.116 37.500 0.00 0.00 0.00 2.43
146 147 8.525290 AAATGGACAAAAAGGGATGTATCTAG 57.475 34.615 0.00 0.00 0.00 2.43
147 148 8.748412 CAAAATGGACAAAAAGGGATGTATCTA 58.252 33.333 0.00 0.00 0.00 1.98
148 149 7.454380 TCAAAATGGACAAAAAGGGATGTATCT 59.546 33.333 0.00 0.00 0.00 1.98
149 150 7.610865 TCAAAATGGACAAAAAGGGATGTATC 58.389 34.615 0.00 0.00 0.00 2.24
150 151 7.552050 TCAAAATGGACAAAAAGGGATGTAT 57.448 32.000 0.00 0.00 0.00 2.29
151 152 6.985653 TCAAAATGGACAAAAAGGGATGTA 57.014 33.333 0.00 0.00 0.00 2.29
152 153 5.885449 TCAAAATGGACAAAAAGGGATGT 57.115 34.783 0.00 0.00 0.00 3.06
153 154 6.369615 GTCATCAAAATGGACAAAAAGGGATG 59.630 38.462 0.00 0.00 33.42 3.51
154 155 6.043012 TGTCATCAAAATGGACAAAAAGGGAT 59.957 34.615 0.00 0.00 33.42 3.85
155 156 5.365025 TGTCATCAAAATGGACAAAAAGGGA 59.635 36.000 0.00 0.00 33.42 4.20
156 157 5.609423 TGTCATCAAAATGGACAAAAAGGG 58.391 37.500 0.00 0.00 33.42 3.95
157 158 6.762661 ACTTGTCATCAAAATGGACAAAAAGG 59.237 34.615 7.70 0.11 34.98 3.11
158 159 7.775397 ACTTGTCATCAAAATGGACAAAAAG 57.225 32.000 7.70 0.11 34.98 2.27
159 160 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
160 161 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
161 162 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
162 163 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
163 164 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
164 165 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
165 166 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
166 167 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
167 168 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
168 169 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
169 170 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
170 171 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
171 172 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
172 173 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
173 174 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
174 175 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
175 176 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
176 177 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
177 178 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
178 179 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
179 180 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
180 181 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
181 182 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
182 183 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
183 184 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
184 185 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
185 186 1.753073 GAATACTCCCTCCGTCCGAAA 59.247 52.381 0.00 0.00 0.00 3.46
186 187 1.064166 AGAATACTCCCTCCGTCCGAA 60.064 52.381 0.00 0.00 0.00 4.30
187 188 0.549950 AGAATACTCCCTCCGTCCGA 59.450 55.000 0.00 0.00 0.00 4.55
188 189 0.669077 CAGAATACTCCCTCCGTCCG 59.331 60.000 0.00 0.00 0.00 4.79
189 190 1.777941 ACAGAATACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
190 191 3.522553 CAAACAGAATACTCCCTCCGTC 58.477 50.000 0.00 0.00 0.00 4.79
191 192 2.236395 CCAAACAGAATACTCCCTCCGT 59.764 50.000 0.00 0.00 0.00 4.69
192 193 2.500098 TCCAAACAGAATACTCCCTCCG 59.500 50.000 0.00 0.00 0.00 4.63
193 194 4.779993 ATCCAAACAGAATACTCCCTCC 57.220 45.455 0.00 0.00 0.00 4.30
194 195 4.884164 CCAATCCAAACAGAATACTCCCTC 59.116 45.833 0.00 0.00 0.00 4.30
195 196 4.292306 ACCAATCCAAACAGAATACTCCCT 59.708 41.667 0.00 0.00 0.00 4.20
196 197 4.600062 ACCAATCCAAACAGAATACTCCC 58.400 43.478 0.00 0.00 0.00 4.30
197 198 7.881775 AATACCAATCCAAACAGAATACTCC 57.118 36.000 0.00 0.00 0.00 3.85
223 224 5.772672 ACCATAGGACTTGTTGCACAAATAA 59.227 36.000 0.00 0.00 37.69 1.40
227 228 3.222173 ACCATAGGACTTGTTGCACAA 57.778 42.857 0.00 0.00 36.54 3.33
240 241 5.934625 GGCACAAATGAGATAGTACCATAGG 59.065 44.000 0.00 0.00 0.00 2.57
434 435 6.235231 ACTACGTCCATCCTTGTTTATCAT 57.765 37.500 0.00 0.00 0.00 2.45
436 437 6.803642 ACTACTACGTCCATCCTTGTTTATC 58.196 40.000 0.00 0.00 0.00 1.75
448 449 7.646548 TTCTCTACTACTACTACTACGTCCA 57.353 40.000 0.00 0.00 0.00 4.02
615 616 9.908152 CTCCCTTCGTTTTTAAATATTTGTCTT 57.092 29.630 11.05 0.00 0.00 3.01
616 617 9.074576 ACTCCCTTCGTTTTTAAATATTTGTCT 57.925 29.630 11.05 0.00 0.00 3.41
627 628 9.116067 CCATGAAATATACTCCCTTCGTTTTTA 57.884 33.333 0.00 0.00 0.00 1.52
628 629 7.614192 ACCATGAAATATACTCCCTTCGTTTTT 59.386 33.333 0.00 0.00 0.00 1.94
629 630 7.116736 ACCATGAAATATACTCCCTTCGTTTT 58.883 34.615 0.00 0.00 0.00 2.43
630 631 6.659824 ACCATGAAATATACTCCCTTCGTTT 58.340 36.000 0.00 0.00 0.00 3.60
631 632 6.248569 ACCATGAAATATACTCCCTTCGTT 57.751 37.500 0.00 0.00 0.00 3.85
632 633 5.221661 GGACCATGAAATATACTCCCTTCGT 60.222 44.000 0.00 0.00 0.00 3.85
633 634 5.221641 TGGACCATGAAATATACTCCCTTCG 60.222 44.000 0.00 0.00 0.00 3.79
634 635 5.998363 GTGGACCATGAAATATACTCCCTTC 59.002 44.000 0.00 0.00 0.00 3.46
635 636 5.672194 AGTGGACCATGAAATATACTCCCTT 59.328 40.000 0.00 0.00 0.00 3.95
636 637 5.227593 AGTGGACCATGAAATATACTCCCT 58.772 41.667 0.00 0.00 0.00 4.20
637 638 5.568620 AGTGGACCATGAAATATACTCCC 57.431 43.478 0.00 0.00 0.00 4.30
638 639 6.591935 TGAAGTGGACCATGAAATATACTCC 58.408 40.000 0.00 0.00 0.00 3.85
639 640 7.254932 GCTTGAAGTGGACCATGAAATATACTC 60.255 40.741 0.00 0.00 0.00 2.59
640 641 6.543831 GCTTGAAGTGGACCATGAAATATACT 59.456 38.462 0.00 0.00 0.00 2.12
641 642 6.238759 GGCTTGAAGTGGACCATGAAATATAC 60.239 42.308 0.00 0.00 0.00 1.47
642 643 5.827797 GGCTTGAAGTGGACCATGAAATATA 59.172 40.000 0.00 0.00 0.00 0.86
643 644 4.646492 GGCTTGAAGTGGACCATGAAATAT 59.354 41.667 0.00 0.00 0.00 1.28
655 656 2.551459 CTGTCTTGAAGGCTTGAAGTGG 59.449 50.000 22.83 12.11 0.00 4.00
664 665 1.815003 CCCAATGTCTGTCTTGAAGGC 59.185 52.381 0.00 0.00 0.00 4.35
696 697 1.146263 GTTGACCGGCATAGGAGGG 59.854 63.158 0.00 0.00 34.73 4.30
700 701 0.034477 AAAGGGTTGACCGGCATAGG 60.034 55.000 0.00 0.00 46.96 2.57
703 704 0.039618 ATCAAAGGGTTGACCGGCAT 59.960 50.000 0.00 0.00 46.40 4.40
735 736 0.174389 TTGAGATCGAGTGGCTCTGC 59.826 55.000 0.00 0.00 0.00 4.26
736 737 2.100418 TGATTGAGATCGAGTGGCTCTG 59.900 50.000 0.00 0.00 34.91 3.35
737 738 2.100584 GTGATTGAGATCGAGTGGCTCT 59.899 50.000 0.00 0.00 34.91 4.09
738 739 2.159184 TGTGATTGAGATCGAGTGGCTC 60.159 50.000 0.00 0.00 34.91 4.70
739 740 1.827344 TGTGATTGAGATCGAGTGGCT 59.173 47.619 0.00 0.00 34.91 4.75
741 742 2.926200 GTGTGTGATTGAGATCGAGTGG 59.074 50.000 0.00 0.00 34.91 4.00
743 744 2.488153 TCGTGTGTGATTGAGATCGAGT 59.512 45.455 0.00 0.00 34.91 4.18
744 745 3.104470 CTCGTGTGTGATTGAGATCGAG 58.896 50.000 0.00 0.00 37.72 4.04
745 746 2.488153 ACTCGTGTGTGATTGAGATCGA 59.512 45.455 0.00 0.00 34.91 3.59
746 747 2.868662 ACTCGTGTGTGATTGAGATCG 58.131 47.619 0.00 0.00 34.91 3.69
747 748 4.987832 AGTACTCGTGTGTGATTGAGATC 58.012 43.478 0.00 0.00 32.81 2.75
748 749 5.447413 CGTAGTACTCGTGTGTGATTGAGAT 60.447 44.000 0.00 0.00 32.81 2.75
750 751 4.089341 CGTAGTACTCGTGTGTGATTGAG 58.911 47.826 0.00 0.00 34.65 3.02
751 752 3.747529 TCGTAGTACTCGTGTGTGATTGA 59.252 43.478 0.00 0.00 0.00 2.57
752 753 4.074466 TCGTAGTACTCGTGTGTGATTG 57.926 45.455 0.00 0.00 0.00 2.67
753 754 4.754372 TTCGTAGTACTCGTGTGTGATT 57.246 40.909 0.00 0.00 0.00 2.57
755 756 3.747529 TCATTCGTAGTACTCGTGTGTGA 59.252 43.478 0.00 4.83 0.00 3.58
756 757 4.074466 TCATTCGTAGTACTCGTGTGTG 57.926 45.455 0.00 2.83 0.00 3.82
757 758 4.493708 CGATCATTCGTAGTACTCGTGTGT 60.494 45.833 0.00 0.00 40.53 3.72
758 759 3.960621 CGATCATTCGTAGTACTCGTGTG 59.039 47.826 0.00 7.10 40.53 3.82
772 773 5.755375 TCCTCTTGATTACTTGCGATCATTC 59.245 40.000 0.00 0.00 32.73 2.67
773 774 5.674525 TCCTCTTGATTACTTGCGATCATT 58.325 37.500 0.00 0.00 32.73 2.57
774 775 5.282055 TCCTCTTGATTACTTGCGATCAT 57.718 39.130 0.00 0.00 32.73 2.45
776 777 5.112686 AGTTCCTCTTGATTACTTGCGATC 58.887 41.667 0.00 0.00 0.00 3.69
779 780 5.385617 CAAAGTTCCTCTTGATTACTTGCG 58.614 41.667 0.00 0.00 36.40 4.85
822 971 6.919115 GCGGAAGAATAAGAAACTACTCCTAG 59.081 42.308 0.00 0.00 0.00 3.02
968 1121 1.276705 GTTTGGTGGAGGAGAGGAGAC 59.723 57.143 0.00 0.00 0.00 3.36
1023 1176 2.635229 CTTGGATCACGGAGCTCGGG 62.635 65.000 23.45 13.02 45.15 5.14
1027 1180 1.078848 GTGCTTGGATCACGGAGCT 60.079 57.895 0.00 0.00 36.16 4.09
1049 1202 4.537433 ATCGAGGGGCTGCGCTTC 62.537 66.667 17.12 17.12 0.00 3.86
1142 1323 3.087253 TACCGGCCCATGTCCAGG 61.087 66.667 0.00 0.00 0.00 4.45
1648 1841 3.071457 CACAAGGGGAAAAAGAAAGCCAT 59.929 43.478 0.00 0.00 0.00 4.40
1650 1843 2.434336 ACACAAGGGGAAAAAGAAAGCC 59.566 45.455 0.00 0.00 0.00 4.35
1656 1849 4.131596 TCTCGTAACACAAGGGGAAAAAG 58.868 43.478 0.00 0.00 0.00 2.27
1773 1969 5.798934 ACGTGAGTATGTATTCGAACTTCAC 59.201 40.000 0.00 6.26 46.88 3.18
1804 2000 1.818060 TGCTGCCACACCACATAATTC 59.182 47.619 0.00 0.00 0.00 2.17
1876 2073 1.882912 TATCGGTTCTGATGCATGGC 58.117 50.000 2.46 0.00 0.00 4.40
1915 2117 9.676861 ATTCTGATCTTATGTTGATTCACAAGA 57.323 29.630 0.00 0.00 39.30 3.02
1933 2135 5.694006 CGGGAAGAGACACATAATTCTGATC 59.306 44.000 0.00 0.00 0.00 2.92
1941 2143 3.410631 TTTGCGGGAAGAGACACATAA 57.589 42.857 0.00 0.00 0.00 1.90
1942 2144 3.410631 TTTTGCGGGAAGAGACACATA 57.589 42.857 0.00 0.00 0.00 2.29
1943 2145 2.270352 TTTTGCGGGAAGAGACACAT 57.730 45.000 0.00 0.00 0.00 3.21
1944 2146 2.045561 TTTTTGCGGGAAGAGACACA 57.954 45.000 0.00 0.00 0.00 3.72
1962 2175 4.000988 AGCCGAGACAACATAATTCGTTT 58.999 39.130 0.00 0.00 0.00 3.60
1965 2178 3.186909 TCAGCCGAGACAACATAATTCG 58.813 45.455 0.00 0.00 0.00 3.34
2002 2218 1.003116 GTGCTATCAAATGAGCCGCTG 60.003 52.381 0.00 0.00 37.94 5.18
2010 2226 1.766494 TGGCTGGGTGCTATCAAATG 58.234 50.000 0.00 0.00 42.39 2.32
2024 2240 6.705381 TGGTTTGAAATTTAACATCTTGGCTG 59.295 34.615 6.25 0.00 0.00 4.85
2036 2252 7.923878 GGTTTGTTAGCTCTGGTTTGAAATTTA 59.076 33.333 0.00 0.00 0.00 1.40
2044 2260 4.097892 CACTTGGTTTGTTAGCTCTGGTTT 59.902 41.667 0.00 0.00 0.00 3.27
2054 2270 7.558444 ACTTCAGGTAATTCACTTGGTTTGTTA 59.442 33.333 0.00 0.00 35.03 2.41
2066 2282 6.070995 ACCGTCTTGATACTTCAGGTAATTCA 60.071 38.462 0.00 0.00 33.74 2.57
2105 2328 3.749088 CGTAAAGCCCATGTTTGAGTGTA 59.251 43.478 0.00 0.00 0.00 2.90
2109 2332 2.161609 GGTCGTAAAGCCCATGTTTGAG 59.838 50.000 0.00 0.00 0.00 3.02
2137 2452 5.530519 AGCGATGTACAATGTAACAAGTG 57.469 39.130 0.00 0.00 0.00 3.16
2164 2479 9.959749 GTTTGATGATCCTGTTTACTTTTGTAA 57.040 29.630 0.00 0.00 42.54 2.41
2166 2481 7.069331 TGGTTTGATGATCCTGTTTACTTTTGT 59.931 33.333 0.00 0.00 0.00 2.83
2176 2493 6.947733 TCTTTATGTTGGTTTGATGATCCTGT 59.052 34.615 0.00 0.00 0.00 4.00
2216 2533 7.500141 AGGCATCAGTCTTTATGTTTGTTTTT 58.500 30.769 0.00 0.00 0.00 1.94
2217 2534 7.054491 AGGCATCAGTCTTTATGTTTGTTTT 57.946 32.000 0.00 0.00 0.00 2.43
2218 2535 6.568462 CGAGGCATCAGTCTTTATGTTTGTTT 60.568 38.462 0.00 0.00 0.00 2.83
2219 2536 5.106555 CGAGGCATCAGTCTTTATGTTTGTT 60.107 40.000 0.00 0.00 0.00 2.83
2220 2537 4.393062 CGAGGCATCAGTCTTTATGTTTGT 59.607 41.667 0.00 0.00 0.00 2.83
2221 2538 4.393062 ACGAGGCATCAGTCTTTATGTTTG 59.607 41.667 0.00 0.00 0.00 2.93
2222 2539 4.579869 ACGAGGCATCAGTCTTTATGTTT 58.420 39.130 0.00 0.00 0.00 2.83
2223 2540 4.184629 GACGAGGCATCAGTCTTTATGTT 58.815 43.478 13.47 0.00 32.58 2.71
2224 2541 3.195610 TGACGAGGCATCAGTCTTTATGT 59.804 43.478 18.80 0.00 36.01 2.29
2225 2542 3.553511 GTGACGAGGCATCAGTCTTTATG 59.446 47.826 18.80 0.00 36.01 1.90
2226 2543 3.195610 TGTGACGAGGCATCAGTCTTTAT 59.804 43.478 18.80 0.00 36.01 1.40
2227 2544 2.560981 TGTGACGAGGCATCAGTCTTTA 59.439 45.455 18.80 7.38 36.01 1.85
2228 2545 1.344438 TGTGACGAGGCATCAGTCTTT 59.656 47.619 18.80 0.00 36.01 2.52
2229 2546 0.969149 TGTGACGAGGCATCAGTCTT 59.031 50.000 18.80 0.00 36.01 3.01
2230 2547 0.244994 GTGTGACGAGGCATCAGTCT 59.755 55.000 18.80 0.00 36.01 3.24
2231 2548 0.244994 AGTGTGACGAGGCATCAGTC 59.755 55.000 13.74 13.74 35.61 3.51
2232 2549 0.037882 CAGTGTGACGAGGCATCAGT 60.038 55.000 0.00 0.00 0.00 3.41
2233 2550 0.244721 TCAGTGTGACGAGGCATCAG 59.755 55.000 0.00 0.00 0.00 2.90
2234 2551 0.038251 GTCAGTGTGACGAGGCATCA 60.038 55.000 0.00 0.00 37.67 3.07
2235 2552 2.743195 GTCAGTGTGACGAGGCATC 58.257 57.895 0.00 0.00 37.67 3.91
2236 2553 4.996976 GTCAGTGTGACGAGGCAT 57.003 55.556 0.00 0.00 37.67 4.40
2285 2604 4.616835 GCCAATGTCTCCTTTGATCACAAC 60.617 45.833 0.00 0.00 35.63 3.32
2296 2615 0.908198 GGAGTCTGCCAATGTCTCCT 59.092 55.000 0.00 0.00 40.78 3.69
2297 2616 0.908198 AGGAGTCTGCCAATGTCTCC 59.092 55.000 0.00 0.00 43.29 3.71
2303 2622 1.000396 GGCCAAGGAGTCTGCCAAT 60.000 57.895 0.00 0.00 43.46 3.16
2440 2784 1.221523 ACATCCCCCTGATCTGCTCTA 59.778 52.381 0.00 0.00 0.00 2.43
2444 2788 1.105759 GCAACATCCCCCTGATCTGC 61.106 60.000 0.00 0.00 34.11 4.26
2502 2846 7.042335 TCTTAACTCTTAAGGCAATGCTACTC 58.958 38.462 4.82 0.00 42.23 2.59
2506 2850 6.418101 TCATCTTAACTCTTAAGGCAATGCT 58.582 36.000 4.82 0.00 42.23 3.79
2507 2851 6.683974 TCATCTTAACTCTTAAGGCAATGC 57.316 37.500 1.85 0.00 42.23 3.56
2532 2876 4.009002 GCAGCAGATCCTCTTCTCTTTTT 58.991 43.478 0.00 0.00 0.00 1.94
2533 2877 3.263937 AGCAGCAGATCCTCTTCTCTTTT 59.736 43.478 0.00 0.00 0.00 2.27
2534 2878 2.839425 AGCAGCAGATCCTCTTCTCTTT 59.161 45.455 0.00 0.00 0.00 2.52
2535 2879 2.431782 GAGCAGCAGATCCTCTTCTCTT 59.568 50.000 0.00 0.00 0.00 2.85
2536 2880 2.034124 GAGCAGCAGATCCTCTTCTCT 58.966 52.381 0.00 0.00 0.00 3.10
2537 2881 1.069049 GGAGCAGCAGATCCTCTTCTC 59.931 57.143 6.09 3.86 46.84 2.87
2538 2882 1.122227 GGAGCAGCAGATCCTCTTCT 58.878 55.000 6.09 0.00 46.84 2.85
2539 2883 3.684693 GGAGCAGCAGATCCTCTTC 57.315 57.895 6.09 0.00 46.84 2.87
2545 2889 0.761187 TATGTGGGGAGCAGCAGATC 59.239 55.000 0.00 0.00 0.00 2.75
2546 2890 1.216064 TTATGTGGGGAGCAGCAGAT 58.784 50.000 0.00 0.00 0.00 2.90
2547 2891 0.991146 TTTATGTGGGGAGCAGCAGA 59.009 50.000 0.00 0.00 0.00 4.26
2548 2892 1.474077 GTTTTATGTGGGGAGCAGCAG 59.526 52.381 0.00 0.00 0.00 4.24
2549 2893 1.202989 TGTTTTATGTGGGGAGCAGCA 60.203 47.619 0.00 0.00 0.00 4.41
2550 2894 1.474077 CTGTTTTATGTGGGGAGCAGC 59.526 52.381 0.00 0.00 0.00 5.25
2551 2895 3.012518 CTCTGTTTTATGTGGGGAGCAG 58.987 50.000 0.00 0.00 0.00 4.24
2552 2896 2.290896 CCTCTGTTTTATGTGGGGAGCA 60.291 50.000 0.00 0.00 0.00 4.26
2553 2897 2.290960 ACCTCTGTTTTATGTGGGGAGC 60.291 50.000 0.00 0.00 0.00 4.70
2554 2898 3.721087 ACCTCTGTTTTATGTGGGGAG 57.279 47.619 0.00 0.00 0.00 4.30
2555 2899 3.054655 GCTACCTCTGTTTTATGTGGGGA 60.055 47.826 0.00 0.00 0.00 4.81
2556 2900 3.054361 AGCTACCTCTGTTTTATGTGGGG 60.054 47.826 0.00 0.00 0.00 4.96
2557 2901 3.941483 CAGCTACCTCTGTTTTATGTGGG 59.059 47.826 0.00 0.00 0.00 4.61
2558 2902 3.375299 GCAGCTACCTCTGTTTTATGTGG 59.625 47.826 0.00 0.00 36.49 4.17
2559 2903 4.256920 AGCAGCTACCTCTGTTTTATGTG 58.743 43.478 0.00 0.00 36.49 3.21
2560 2904 4.559862 AGCAGCTACCTCTGTTTTATGT 57.440 40.909 0.00 0.00 36.49 2.29
2561 2905 7.559590 AATTAGCAGCTACCTCTGTTTTATG 57.440 36.000 0.00 0.00 36.49 1.90
2562 2906 9.681062 TTAAATTAGCAGCTACCTCTGTTTTAT 57.319 29.630 0.00 0.00 36.49 1.40
2563 2907 8.943002 GTTAAATTAGCAGCTACCTCTGTTTTA 58.057 33.333 0.00 0.00 36.49 1.52
2564 2908 7.447238 TGTTAAATTAGCAGCTACCTCTGTTTT 59.553 33.333 0.00 0.00 36.49 2.43
2565 2909 6.940298 TGTTAAATTAGCAGCTACCTCTGTTT 59.060 34.615 0.00 0.46 36.49 2.83
2566 2910 6.472887 TGTTAAATTAGCAGCTACCTCTGTT 58.527 36.000 0.00 0.00 36.49 3.16
2567 2911 6.049955 TGTTAAATTAGCAGCTACCTCTGT 57.950 37.500 0.00 0.00 36.49 3.41
2568 2912 6.109359 ACTGTTAAATTAGCAGCTACCTCTG 58.891 40.000 15.26 0.00 40.20 3.35
2569 2913 6.301169 ACTGTTAAATTAGCAGCTACCTCT 57.699 37.500 15.26 0.00 40.20 3.69
2570 2914 7.222999 CACTACTGTTAAATTAGCAGCTACCTC 59.777 40.741 15.26 0.00 40.20 3.85
2571 2915 7.042335 CACTACTGTTAAATTAGCAGCTACCT 58.958 38.462 15.26 0.54 40.20 3.08
2572 2916 6.817140 ACACTACTGTTAAATTAGCAGCTACC 59.183 38.462 15.26 0.00 40.20 3.18
2573 2917 7.544566 TGACACTACTGTTAAATTAGCAGCTAC 59.455 37.037 15.26 0.00 40.20 3.58
2574 2918 7.544566 GTGACACTACTGTTAAATTAGCAGCTA 59.455 37.037 15.26 0.00 40.20 3.32
2575 2919 6.369065 GTGACACTACTGTTAAATTAGCAGCT 59.631 38.462 15.26 0.00 40.20 4.24
2576 2920 6.402226 GGTGACACTACTGTTAAATTAGCAGC 60.402 42.308 15.26 1.04 40.20 5.25
2577 2921 6.649141 TGGTGACACTACTGTTAAATTAGCAG 59.351 38.462 14.02 14.02 38.03 4.24
2578 2922 6.526526 TGGTGACACTACTGTTAAATTAGCA 58.473 36.000 5.39 0.00 33.40 3.49
2579 2923 7.429636 TTGGTGACACTACTGTTAAATTAGC 57.570 36.000 5.39 0.00 42.67 3.09
2604 2948 3.437741 ACAAAGTGAACGTCTCGGTTTTT 59.562 39.130 0.00 0.00 0.00 1.94
2605 2949 3.004862 ACAAAGTGAACGTCTCGGTTTT 58.995 40.909 0.00 0.00 0.00 2.43
2606 2950 2.624636 ACAAAGTGAACGTCTCGGTTT 58.375 42.857 0.00 0.00 0.00 3.27
2607 2951 2.304751 ACAAAGTGAACGTCTCGGTT 57.695 45.000 0.00 0.00 0.00 4.44
2608 2952 2.304751 AACAAAGTGAACGTCTCGGT 57.695 45.000 0.00 0.00 0.00 4.69
2609 2953 3.668596 AAAACAAAGTGAACGTCTCGG 57.331 42.857 0.00 0.00 0.00 4.63
2610 2954 5.446899 GTGTAAAAACAAAGTGAACGTCTCG 59.553 40.000 0.00 0.00 0.00 4.04
2611 2955 6.540205 AGTGTAAAAACAAAGTGAACGTCTC 58.460 36.000 0.00 0.00 0.00 3.36
2612 2956 6.490566 AGTGTAAAAACAAAGTGAACGTCT 57.509 33.333 0.00 0.00 0.00 4.18
2613 2957 5.446899 CGAGTGTAAAAACAAAGTGAACGTC 59.553 40.000 0.00 0.00 0.00 4.34
2614 2958 5.120519 TCGAGTGTAAAAACAAAGTGAACGT 59.879 36.000 0.00 0.00 0.00 3.99
2615 2959 5.552807 TCGAGTGTAAAAACAAAGTGAACG 58.447 37.500 0.00 0.00 0.00 3.95
2616 2960 6.797995 TGTTCGAGTGTAAAAACAAAGTGAAC 59.202 34.615 0.00 0.00 33.37 3.18
2617 2961 6.900189 TGTTCGAGTGTAAAAACAAAGTGAA 58.100 32.000 0.00 0.00 0.00 3.18
2618 2962 6.483385 TGTTCGAGTGTAAAAACAAAGTGA 57.517 33.333 0.00 0.00 0.00 3.41
2619 2963 6.196353 CCATGTTCGAGTGTAAAAACAAAGTG 59.804 38.462 0.00 0.00 35.46 3.16
2620 2964 6.262601 CCATGTTCGAGTGTAAAAACAAAGT 58.737 36.000 0.00 0.00 35.46 2.66
2621 2965 5.685511 CCCATGTTCGAGTGTAAAAACAAAG 59.314 40.000 0.00 0.00 35.46 2.77
2622 2966 5.583495 CCCATGTTCGAGTGTAAAAACAAA 58.417 37.500 0.00 0.00 35.46 2.83
2623 2967 4.498345 GCCCATGTTCGAGTGTAAAAACAA 60.498 41.667 0.00 0.00 35.46 2.83
2624 2968 3.003897 GCCCATGTTCGAGTGTAAAAACA 59.996 43.478 0.00 0.00 36.19 2.83
2625 2969 3.252458 AGCCCATGTTCGAGTGTAAAAAC 59.748 43.478 0.00 0.00 0.00 2.43
2626 2970 3.482436 AGCCCATGTTCGAGTGTAAAAA 58.518 40.909 0.00 0.00 0.00 1.94
2627 2971 3.134574 AGCCCATGTTCGAGTGTAAAA 57.865 42.857 0.00 0.00 0.00 1.52
2628 2972 2.851263 AGCCCATGTTCGAGTGTAAA 57.149 45.000 0.00 0.00 0.00 2.01
2629 2973 2.851263 AAGCCCATGTTCGAGTGTAA 57.149 45.000 0.00 0.00 0.00 2.41
2630 2974 2.851263 AAAGCCCATGTTCGAGTGTA 57.149 45.000 0.00 0.00 0.00 2.90
2631 2975 2.423577 GTAAAGCCCATGTTCGAGTGT 58.576 47.619 0.00 0.00 0.00 3.55
2632 2976 1.393539 CGTAAAGCCCATGTTCGAGTG 59.606 52.381 0.00 0.00 0.00 3.51
2633 2977 1.274167 TCGTAAAGCCCATGTTCGAGT 59.726 47.619 0.00 0.00 0.00 4.18
2634 2978 1.927174 CTCGTAAAGCCCATGTTCGAG 59.073 52.381 0.00 0.00 37.55 4.04
2635 2979 2.004583 CTCGTAAAGCCCATGTTCGA 57.995 50.000 0.00 0.00 0.00 3.71
2636 2980 0.373716 GCTCGTAAAGCCCATGTTCG 59.626 55.000 0.00 0.00 45.92 3.95
2646 2990 4.084433 CGCCTCTACTAGTAGCTCGTAAAG 60.084 50.000 22.87 13.58 33.32 1.85
2647 2991 3.806521 CGCCTCTACTAGTAGCTCGTAAA 59.193 47.826 22.87 5.21 33.32 2.01
2648 2992 3.068732 TCGCCTCTACTAGTAGCTCGTAA 59.931 47.826 22.87 5.89 33.32 3.18
2649 2993 2.625314 TCGCCTCTACTAGTAGCTCGTA 59.375 50.000 22.87 6.56 33.32 3.43
2650 2994 1.411977 TCGCCTCTACTAGTAGCTCGT 59.588 52.381 22.87 0.00 33.32 4.18
2651 2995 2.151881 TCGCCTCTACTAGTAGCTCG 57.848 55.000 22.87 22.06 33.32 5.03
2652 2996 4.096081 TGTTTTCGCCTCTACTAGTAGCTC 59.904 45.833 22.87 13.38 33.32 4.09
2653 2997 4.015084 TGTTTTCGCCTCTACTAGTAGCT 58.985 43.478 22.87 0.00 33.32 3.32
2654 2998 4.352887 CTGTTTTCGCCTCTACTAGTAGC 58.647 47.826 22.87 12.82 33.32 3.58
2655 2999 4.639310 TCCTGTTTTCGCCTCTACTAGTAG 59.361 45.833 21.87 21.87 34.56 2.57
2656 3000 4.592942 TCCTGTTTTCGCCTCTACTAGTA 58.407 43.478 1.89 1.89 0.00 1.82
2657 3001 3.428532 TCCTGTTTTCGCCTCTACTAGT 58.571 45.455 0.00 0.00 0.00 2.57
2658 3002 4.657436 ATCCTGTTTTCGCCTCTACTAG 57.343 45.455 0.00 0.00 0.00 2.57
2659 3003 5.187186 AGAAATCCTGTTTTCGCCTCTACTA 59.813 40.000 0.00 0.00 39.93 1.82
2660 3004 3.983044 AATCCTGTTTTCGCCTCTACT 57.017 42.857 0.00 0.00 0.00 2.57
2661 3005 4.254492 AGAAATCCTGTTTTCGCCTCTAC 58.746 43.478 0.00 0.00 39.93 2.59
2662 3006 4.020573 TGAGAAATCCTGTTTTCGCCTCTA 60.021 41.667 0.00 0.00 39.93 2.43
2663 3007 3.244561 TGAGAAATCCTGTTTTCGCCTCT 60.245 43.478 0.00 0.00 39.93 3.69
2664 3008 3.074412 TGAGAAATCCTGTTTTCGCCTC 58.926 45.455 0.00 0.00 39.93 4.70
2665 3009 3.140325 TGAGAAATCCTGTTTTCGCCT 57.860 42.857 0.00 0.00 39.93 5.52
2666 3010 3.915437 TTGAGAAATCCTGTTTTCGCC 57.085 42.857 0.00 0.00 39.93 5.54
2667 3011 3.670523 GCTTTGAGAAATCCTGTTTTCGC 59.329 43.478 0.00 0.00 39.93 4.70
2668 3012 4.022849 AGGCTTTGAGAAATCCTGTTTTCG 60.023 41.667 0.00 0.00 39.93 3.46
2669 3013 5.459536 AGGCTTTGAGAAATCCTGTTTTC 57.540 39.130 0.00 0.00 35.77 2.29
2670 3014 5.478332 CCTAGGCTTTGAGAAATCCTGTTTT 59.522 40.000 0.00 0.00 37.55 2.43
2671 3015 5.012893 CCTAGGCTTTGAGAAATCCTGTTT 58.987 41.667 0.00 0.00 37.55 2.83
2672 3016 4.568592 CCCTAGGCTTTGAGAAATCCTGTT 60.569 45.833 2.05 0.00 37.55 3.16
2673 3017 3.054065 CCCTAGGCTTTGAGAAATCCTGT 60.054 47.826 2.05 0.00 37.55 4.00
2674 3018 3.549794 CCCTAGGCTTTGAGAAATCCTG 58.450 50.000 2.05 0.00 37.55 3.86
2675 3019 2.092158 GCCCTAGGCTTTGAGAAATCCT 60.092 50.000 2.05 0.00 46.69 3.24
2676 3020 2.302260 GCCCTAGGCTTTGAGAAATCC 58.698 52.381 2.05 0.00 46.69 3.01
2689 3033 4.031611 AGTCAGTTAGGTTTAGCCCTAGG 58.968 47.826 0.06 0.06 38.32 3.02
2690 3034 6.778559 AGATAGTCAGTTAGGTTTAGCCCTAG 59.221 42.308 0.00 0.00 38.32 3.02
2691 3035 6.680540 AGATAGTCAGTTAGGTTTAGCCCTA 58.319 40.000 0.00 0.00 38.26 3.53
2692 3036 5.530243 AGATAGTCAGTTAGGTTTAGCCCT 58.470 41.667 0.00 0.00 38.26 5.19
2693 3037 5.873146 AGATAGTCAGTTAGGTTTAGCCC 57.127 43.478 0.00 0.00 38.26 5.19
2694 3038 9.662947 TTTTTAGATAGTCAGTTAGGTTTAGCC 57.337 33.333 0.00 0.00 37.58 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.