>input_sequence_70334
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--------------------------------GCCTGCACCGACGACTTGGAGCGCCCGAGCTCCGTGATCCAAGCACCC
CGAAGCGCAG-------CCCCTCGATGGCCGCCGACGAGGCCCCAACC---------------------ACGGAGGCGGC
GTGCCAGGACCTGGTCGAGATCCTTGACGAGGGATCGGGCCGCCTGGACATGGGCCGGTACGTGGACCACGTCCGCGACC
TCTCGGCGGGCGCCATCGCCACCTTCGAGGGCACCACGCGGGACCACTTCGACGGGAGGCGCGTGGTGGAGCTCCGCTAC
GAGGCGTACGGGGCCATGGCGCGGCGCCGGCTCGAGGCCATCCTCCGCGAGGCCCGCGCCGCGCACGCGCTGTGCCGGCT
GGCCGTGGCGCACCGCCTCGGGACGGTCCCCGCCGGCGAGGCCAGCGTGTTCGTGGCCGCCTCGGCCGTGCACCGCGCGG
ACGCCATGGAGGCGTGCCGCTACGTGATCGACGAGATCAAGGCCTCCGTGCCCATCTGGAAGAAGGAGGTGTACGACGAC
GGCGAGGTGTGGAAGGAGAACCGCGAGTTCCTCGACCGCACCGACGCCGAGAAGCAGGGCAAGCCGGCCGC---------
---CGGCGGCGGCTGCTGCTGCGGCAGCAAGGTGAGGGTGAGCTGATGAGTGGCAGCCGCCGGATCGCGATCACGTGAAC
ATGGCTTTCTTTTTCCCCTTGTGTTACGAGAGATTTTAGAGGAAGAGAAAGGTGAAGTTCGAATACAATAATATCTTCAC
ATTGTG--------------------------------------------------------------------------
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>chr5B_1_TraesCS5B01G191900
AAAAATGATAAATTTCGGATTTTGAGAAACATTTCAAAAAAAAAAACTTCTTGAATGTTATAATACATGTGCAATGTACT
CCCTCCGTCCGAAAATACTTGTCATCAAAATGAATAAAAGGGGATGTATCTAGATGTATTTTAGTTCTAGATACATCCCT
TTTTGTCCATTTTGATGACAAGTATTTTCGGACGGAGGGAGTATTCTGTTTGGATTGGTATTTTTATTTGTGCAACAAGT
CCTATGGTACTATCTCATTTGTGCCAAATTTTGACCATAAATTTAACTAACAAAATGTTCATGCATGTTATAAAAAATTA
TATCACTGAAAACTATGTTCAATTATGAATCCAAAGATTTAATTTTTGTTGAGATTCACTAAGATTTCATAAGTTATATC
TTTGATCAAAATTAAGCACAAATTATAAAAAGGGATGATAAACAAGGATGGACGTAGTAGTAGTAGTAGAGAAAATAAAT
ACTTCCTCATTTCCTAAATATTTGTCATTTTAGAGATTATAAATGGACTACCACATACAGATATATATAGACATATTTTA
GAGTGTAGATTTACTCATTTTGTTTTGTATGTAGTCATTTGTTAAAATATTTAAAAAGACAAATATTTAAAAACGAAGGG
AGTATATTTCATGGTCCACTTCAAGCCTTCAAGACAGACATTGGGAGCAGGTTTCCCCCTCCTATGCCGGTCAACCCTTT
GATTGCTCAGCGCAGGCAGAGCCACTCGATCTCAATCACACACGAGTACTACGAATGATC--------------------
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------------------------------------------------GCAAGTAATCAAGAGGAACTTTGCTATCTCAC
AGGCTCGCTTCTAGGAGTAGTTTCTTATTCTTCCGCTGTCCTCTCGATT-TA---TTTTTTAAGTTTCTGCCGCTTGAGA
CTGAAATCGAATTTAAGAAAATCGCCGGTGCTGGGAGCAGGATGATAAAATAAGAAAGCCGCGGGGCACTTCCGTGGTTC
GTCTCCTCTCCTCCACCAAACCTTATCTCGCTGCCTGCACCGACGACTTGGAGCGCCCGAGCTCCGTGATCCAAGCACCC
CGAAGCGCAG-------CCCCTCGATGGCCGCCGACGAGGCCCCAACC---------------------ACGGAGGCGGC
GTGCCAGGACCTGGTCGAGATCCTTGACGAGGGATCGGGCCGCCTGGACATGGGCCGGTACGTGGACCACGTCCGCGACC
TCTCGGCGGGCGCCATCGCCACCTTCGAGGGCACCACGCGGGACCACTTCGACGGGAGGCGCGTGGTGGAGCTCCGCTAC
GAGGCGTACGGGGCCATGGCGCGGCGCCGGCTCGAGGCCATCCTCCGCGAGGCCCGCGCCGCGCACGCGCTGTGCCGGCT
GGCCGTGGCGCACCGCCTCGGGACGGTCCCCGCCGGCGAGGCCAGCGTGTTCGTGGCCGCCTCGGCCGTGCACCGCGCGG
ACGCCATGGAGGCGTGCCGCTACGTGATCGACGAGATCAAGGCCTCCGTGCCCATCTGGAAGAAGGAGGTGTACGACGAC
GGCGAGGTGTGGAAGGAGAACCGCGAGTTCCTCGACCGCACCGACGCCGAGAAGCAGGGCAAGCCGGCCGC---------
---CGGCGGCGGCTGCTGCTGCGGCAGCAAGGTGAGGGTGAGCTGATGAGTGGCAGCCGCCGGATCGCGATCACGTGAAC
ATGGCTTTCTTTTTCCCCTTGTGTTACGAGAGATTTTAGAGGAAGAGAAAGGTGAAGTTCGAATACAATAATATCTTCAC
ATTGTGTTACACTGCTG---AATGCAAATCCTGTCAGAGAAACAATGTGTGAAGTTCGAATACATACTCACGTTGCAGCG
AATTATGTGGTGTGGCAGCATGAAATTTAC-TACTCCTCATATACTCATTTTTTTTGTGTAGAGAAACTCACGCCATGCA
TCAGAAC-----CGATATGCTGCTGCCTAAAAATCTTCTTGTGAATCAACATAAGATCAGAATTATG-----------TG
TCTCTTCCCGCAAAAAAC---GAATTATGTTGTCTCGGCTGAAGAACAGAAATCAGACAGCGGCTCATTTGATAGCACCC
AGCCAAGATGTTAAATTTCAAACCAGAGCTAACAAACCAAGTGAATTACCTGAAGTATCAAGACGGTAACA-------TC
TCTTATATACACTCAAACATGGGCTTTACGACCTAGT-------------------------------------------
-------------------------------------------------AACACTTGTTACATTGTACATCGCTTTTTTT
A--CAAAAGTAAACAGGATCATCAAACCAACATAAAGACTGATTCATGTCCAAAAAACAAACATAAAGACTGATGCCTCG
--TCACACTGACTGCAAATTAGGCGCCCGTCAGTCCCTCTCAGGTTGTGATCAAAGGAGACATTGGCAGACTCCTTGGCC
AATTGATAGCAATCTTC---GACTGCTACCATTGGACACCAA-----GAATGTCCCCGTCTCATCATTCGGATCACCTAA
GCAATCTGAGCCGTCGACCAGCCTACT-TGCGCCCCGTAGATAG----------------GATTAGAGCAGATCAGGGGG
ATGTTGCCTCCTCTGAAGAACAGAAACCAGTGGGAATGTTCTACAGAGTAGCATTGCCTTAAGAGTTAAGATGAAAAAAA
GAGAAGAGGATCTGCTGCTCCCCACATAAAACAGAGGTAGCTGCTAATTTAACAGTAGTGTCACCAAAAAAACCGAGACG
TTCACTTTGTTTTTACACTCGAACATGGGCTTTACGAGCTACTAGTAGAGGCGAAAACAGGATTTCTCAAAGCCTAGGGC
TAAACCTAACTGACTATCTAAAAAAAAACTAATTGAC
>chr5A_207
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----------------------------------------------TGTTTGGATTGGTATTTCTATATGTGCAACAAGT
TCTATGGTACTACCTCATTTGTGCCAAATTTTGACCATAAATTTAACTAACAAAATGTTCATGCATGTTATAAAAA-TTA
TATCATTGAAAACTATGTTCAATTATGAATCCAAAGATTTAATTTTTATTAAGATTCACTAAGATTTCATAAGTTAAATC
TTTGGTCAAAATTAAGCACAAATTATAAAAAGGGCTAATAAACAAGGACGGACGTAGTAGTAA--------AAATTAAAT
ACTTC---------------------------------------------------------------------------
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----TATTTCATGGTTCACTTCAAACCTTCAAGACAGACATTGGGAGCTGGTTTCCTCCTTCTCTGCCGGTCAACCCTTT
GATTGTTCGTGTAGTTTTAGGTCGTCAATTTGAGAAATTAAATATGTGTTATATGTCATGAAAAGTATATCATTAAATTA
CTACACGAATGTAGTTTCTAAATATATATTTTTTATCATATATAATATATATTTAGATAGTTAAAATGTCGATCTAGAAC
TACGTGAATAACTTATTCATTGAGACGAAGGTAGTATTAAGGATGATTGCAAGTAATCAAGAGGAACTTTGCTATCTCAC
AGGCTCGCTTGTAGGAGTAGTTTCTTATTCTTGCGCTGTCTTCTCGAATATA---TTTTTTAAGTTTGTGCCGCTTGAGA
CTGAAATCGAATTTAAGAAAATCGCCGGTGCTGGGAGCAGGATGATAAAATAAGAAAGCCGCGGGGCACTTCCGTGGTTC
ATCTCCTCTCCTCCACCAAACCTTATCTCGCTGCCTGCACCGACGACTTGGAGCGGCCGCGCTCCGTGATCCAAGCACCC
GAAGCGCCGGCGCAGCTCCCCTCGATGGCCGGCGACGAGCCCCCAACGGCGACGGTCGAGGCCCCGACGACGGAGGCGGC
GTGCCAGGACCTGGTGGAGATCCTGGAGGAGGGATCGGGCCGGCTGGACATGGGCCGGTACGTGGACCACGTCCGCGACC
TGTCGGCGGGCGCCATCGCTACCTTCGAGGGCACCACGCGGGACCACTTCGACGGGAGGCGCGTGGTGGAGCTCCGCTAC
GAGGCGTACGGGGCCATGGCGCGGCGCCGCCTCGAGGCCATCCTCCGCGAGGCCCGCGCCGCGCACGCGCTGTGCCGGCT
GGCCGTGGCGCACCGCCTCGGGACCGTCCCCGCCGGCGAGGCCAGCGTGTTCGTGGCGGCCTCGGCCGTGCACCGCGCCG
ACGCCATGGACGCGTGCCGCTACGTGATCGACGAGATCAAGGCCTCCGTGCCCATCTGGAAGAAGGAGGTGTACGACGAC
GGCGAGGTCTGGAAGGAGAACCGCGAGTTCCTCGACCGCACCGACGCCGAGAAGAAGGGCAAGCCGGCCGCTGCCGCCGG
CCGCGGCGGCGGCGGGTGCTGCGGCAGCAAGGTGAGGGTCAGCTGATGAGTGGCGGCCGCCGGATCGCGATCACGTGGAC
GT-GCCTTTTTTTTCCCCTTGTGTTACGAGAGATTTTAGTGGAAGAGAAAGGTGAAGTTCGAATACAATAATATCTTCAC
ATTTTGTTACACTGCTG---AATGCAAATTCTGTGAGAAAAACAATGTATGCAGTTCGAATACATACTCACGTTGAAGCA
AATCATGTGGTGTGGCAGTATGAGATTTAC-TCCTCGTAC---ACTCA---TTTTTGTGTAGAGAAATTCACACCATGCA
TCAGAAC-----CGATATGCTGCTGCCTAAAAATATG-TTGTGAATCAACATAACATCAGAACAGATTAGAATTATCTTG
TCTCTCCCCGCAAAGAAAAAAGAATTATGTTGTCTCGGCTGAAGAACAGAAATCAGATAGCGGCTGATTTGATAGCACCG
AGCCAAGATGTCAAATTTCGAACCAGAGCAAACAAACCAAGCGAATTACCTGAAGTATCAAGACGGTAACATCTCTTGTC
TCTTATACACAGTCAAACATGGGCTTTACGAACTAGTGCCTCCGTTCTGATTTATTCGTCGTGTCGTGGTTTTAGTTCAA
ATTTGAATTAAAACCACGACGAGTAAATCAGAATGGAGAGAGTACTACTAATACTTATTACATTGTACATCACTTTTTCT
TTTCAAAAGTAAGCAGGATCATCAAACCAACATAAAGATTGAT-------------------------------GCCTCG
TTTCACACTGACTGCAAATTTGGCGCCCGTCAGTCCGTCTCAGATTGTGATCAACAGAGACCTTGGCAGACTCCTTGGCC
AATTGAGAGCAATCTTCATAGACTGCTACCATAGGACACCACTGCAGGAATGCCCCCGTCTCATCACTCGGATCACCTAA
GCAATCTGAGCCGTCGACCAGCCTACTGTGCGCCCCGTAGATAG------------------------------------
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>chr5D_827
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--------------GAGTACTTTCTTATTCTTCCGCTGTCTTCTGGAATGGTAATTTTTTTAAGTTTCTGCCGCTTGAGA
CTGAAATCGGATTTAAG-AAATTTCCGGTGCTGGGAGAAGGGTGATATGATAAAATAAGAA--GGGCACTTCCGTGGTTC
ATCTCCTCACCTCCACCAAACCTTATCTCGCTGCCTGCACCGACGACTTGGAGCGGCCGCGCTCCGTGATCCAAGCACCC
GAAGCGCCGGCGCAGCTCCCCTCGATGGCCGGCGACGAGCCCCCAACG---------------------AC---GGAGGC
GTGCCAGGACCTGGTCGAGATCCTGGACGAGGGATCGGGCCGGCTGGACATGGGCCGGTACGTGGACCACGTCCGCGACC
TCTCGGCGGGCGCCATCGCCACCTTCGAGGGCACCACGCGGGACCACTTCGACGGGAGGCGCGTGGTGGAGCTCCGCTAC
GAGGCGTACGGGGCCATGGCGCGGCGCCGGCTGGAGGCCATCCTCCGCGAGGCCCGCGCCGCGCACGCGCTGTGCCGGCT
GGCCGTGGCGCACCGCCTCGGGACGGTCCCCGCCGGCGAGGCCAGCGTGTTCGTGGCGACCTCGGCCGTGCACCGCGCCG
ACGCCATGGAGGCGTGCCGCTACGTGATCGACGAGATCAAGGCCTCCGTGCCCATCTGGAAGAAGGAGGTGTACGACGAC
GGCGAGGTGTGGAAGGAGAACCGCGAGTTCCTCGACCGCACCGACGCCGAGAAGAAGGGCAAGCCGGCCG----------
-----GCGGCGGCGGATGCTGCGGCAGCAAGGTGAGGGTGAGCTGATGA-TGGCAGCCGCCGGATCGCGATCACGTGAAC
GT-GGTTTTTTTC-CCCCTTGTGTTACGAGAGATTTTAGAGGAAGAGAAAGGTGAAGTTCGGATACAGTAATATCCTCAC
ATTGTGTTACACTGCTACTAAATGCAAATCGTGTCAGAGAAACAATGTATGAAGTTCGAATACATA-TCACGTTGCAGCA
AATTATGTGGTGTGGCAAGTAGTATGAATTTTACTCCTGATATACTCA---TTTTTGTGTAGAGAAACTCAGAGCATGCA
TCAGAACAGAGCCGATATGCTGCTGCATAGCAATCTAAGTTGTT------------------------------------
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--------GTAAGCAGGGTCATCAAACCAACATAAAGACTGAT-------------------------------GCCTCG
--TCACACTGACTGAAAATTTGGCGCCCGCCAGTCCCTCTCAGATTGTGATCAACATAGACCTTGACAGATTCCTTGGCC
AATTGATAGCAATCTTCATAGACTGCTACCATCGGACACCAA-----GAATGTCCCCGTCTCATCATTCGGATCACCTAA
GCAATCTCAGCCGTCGACCAGCCTACTGTGCGCCCCGTGGATAGAGCGAGATTAACATAGGATCAGAACAGATCAGGGGG
ATGTTGCCTCGTCTGAAGAACAGAAACCAGTGGGAATGTTCTACACAGTTACATTGCCTTA-------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S---S------------
S-----------S---------------------------------------------------------------S---
-----S-----------------------------------------S--S-------------------------S---
----S-----------------------------S-S-----------S-------------SSSSSSSSS---S-----
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS-----------S--------S-----------------------S-------S---S--S----------------
-----S--SSSSSSSSSSSS-S-SSSSSS-SSSS-SSSS-S-SSS--SS--SSSS-S--S--------------------
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----------S-----------------------------S------S--------------------------------
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S------------------------------------------------------S---S--------------------
SS-SSSS-S----------------------S-------S-------S--------------------------------
------------------------S-----------------S-------------------------------------
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---------------------------------------------------------S--------------------S-
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------------------------------------------------------S-------------------------
-------------S-S----------------------------------------------------------------
S-S-----S-----------------------------------------------------------------------
------------------------------------------------S------------------------------S
------------------S-------------------S---------SSS---------------------S-------
------------------------------------SS----------------S-------SSSSS-------------
-----S--------S--S---------------------------------------S-------S-------------S
-----------S-------S---------S-----------S--------------------------------------
-------S---S-------------------S------------------------------------------------
---------------------------------------------------S----S--------------S------S-
S-----------S------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
--------------------S----------------------S----------SS-----S------------------
--------------------------------S-----------------------------------------------
---------------------------------------------------------------S---S------------
----------S----------------------------------S---SS----------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_92
------------------------------------------------------------------------AATGTACT
CCCTCCGTCCGA--------------------------------------------------------------------
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>reverse_2218
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---------------------------------------------------------CAGCGGCTCATTTGATAGCAC--
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