Multiple sequence alignment - TraesCS5B01G181700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G181700 chr5B 100.000 2504 0 0 1 2504 331278705 331281208 0.000000e+00 4625.0
1 TraesCS5B01G181700 chr5B 93.684 95 6 0 130 224 121676379 121676285 2.600000e-30 143.0
2 TraesCS5B01G181700 chr5B 88.525 61 7 0 2091 2151 331280757 331280817 9.610000e-10 75.0
3 TraesCS5B01G181700 chr5B 88.525 61 7 0 2053 2113 331280795 331280855 9.610000e-10 75.0
4 TraesCS5B01G181700 chr5A 92.543 1274 56 16 479 1727 382900999 382902258 0.000000e+00 1790.0
5 TraesCS5B01G181700 chr5A 86.813 91 10 2 1958 2047 302993805 302993716 1.580000e-17 100.0
6 TraesCS5B01G181700 chr5D 93.800 1129 58 4 641 1758 290674106 290675233 0.000000e+00 1687.0
7 TraesCS5B01G181700 chr5D 89.299 271 11 8 2144 2408 290675599 290675857 8.640000e-85 324.0
8 TraesCS5B01G181700 chr5D 92.169 166 10 3 1768 1932 290675437 290675600 5.390000e-57 231.0
9 TraesCS5B01G181700 chr5D 85.926 135 16 3 2371 2503 290675858 290675991 9.340000e-30 141.0
10 TraesCS5B01G181700 chr6B 94.792 96 4 1 117 212 53666490 53666584 5.580000e-32 148.0
11 TraesCS5B01G181700 chr6B 94.521 73 3 1 1976 2047 1158144 1158216 7.320000e-21 111.0
12 TraesCS5B01G181700 chr3A 94.624 93 4 1 130 221 426027586 426027494 2.600000e-30 143.0
13 TraesCS5B01G181700 chr3A 94.624 93 4 1 130 221 426073857 426073765 2.600000e-30 143.0
14 TraesCS5B01G181700 chr3A 90.361 83 6 2 1975 2055 437467734 437467816 9.470000e-20 108.0
15 TraesCS5B01G181700 chr7A 92.784 97 7 0 121 217 230567522 230567618 9.340000e-30 141.0
16 TraesCS5B01G181700 chr2D 91.346 104 7 2 113 216 112543912 112543811 9.340000e-30 141.0
17 TraesCS5B01G181700 chr2D 93.478 92 6 0 121 212 2310705 2310796 1.210000e-28 137.0
18 TraesCS5B01G181700 chr1D 92.000 100 8 0 120 219 37527052 37526953 9.340000e-30 141.0
19 TraesCS5B01G181700 chr1D 94.595 74 3 1 1975 2047 204157135 204157208 2.040000e-21 113.0
20 TraesCS5B01G181700 chr4B 87.603 121 11 4 110 227 31518080 31517961 1.210000e-28 137.0
21 TraesCS5B01G181700 chr4B 94.521 73 3 1 1976 2047 24834769 24834697 7.320000e-21 111.0
22 TraesCS5B01G181700 chr4B 89.655 87 5 3 1975 2057 35818946 35819032 9.470000e-20 108.0
23 TraesCS5B01G181700 chr2B 95.714 70 2 1 1979 2047 236456131 236456062 7.320000e-21 111.0
24 TraesCS5B01G181700 chr2A 91.250 80 5 2 1970 2047 34148230 34148309 9.470000e-20 108.0
25 TraesCS5B01G181700 chr3B 90.361 83 5 2 1973 2052 606581487 606581405 3.410000e-19 106.0
26 TraesCS5B01G181700 chr3B 100.000 28 0 0 2117 2144 630881469 630881442 5.000000e-03 52.8
27 TraesCS5B01G181700 chr1B 100.000 29 0 0 39 67 102658725 102658697 1.000000e-03 54.7
28 TraesCS5B01G181700 chr1B 96.774 31 1 0 2117 2147 572442146 572442176 5.000000e-03 52.8
29 TraesCS5B01G181700 chr7B 96.774 31 1 0 2117 2147 463050446 463050476 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G181700 chr5B 331278705 331281208 2503 False 1591.666667 4625 92.3500 1 2504 3 chr5B.!!$F1 2503
1 TraesCS5B01G181700 chr5A 382900999 382902258 1259 False 1790.000000 1790 92.5430 479 1727 1 chr5A.!!$F1 1248
2 TraesCS5B01G181700 chr5D 290674106 290675991 1885 False 595.750000 1687 90.2985 641 2503 4 chr5D.!!$F1 1862

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
712 722 0.373716 GAAAGGGTACTGCATTCGCG 59.626 55.0 0.0 0.0 42.97 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2315 2553 0.461339 GAGCAGGATCGCCCGTTAAA 60.461 55.0 0.0 0.0 40.87 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.575162 GTAACATCATGTTTTTGAGGGAGT 57.425 37.500 8.69 0.00 41.45 3.85
24 25 7.681939 GTAACATCATGTTTTTGAGGGAGTA 57.318 36.000 8.69 0.00 41.45 2.59
25 26 8.281212 GTAACATCATGTTTTTGAGGGAGTAT 57.719 34.615 8.69 0.00 41.45 2.12
26 27 9.391006 GTAACATCATGTTTTTGAGGGAGTATA 57.609 33.333 8.69 0.00 41.45 1.47
28 29 9.479549 AACATCATGTTTTTGAGGGAGTATATT 57.520 29.630 0.00 0.00 37.26 1.28
29 30 9.479549 ACATCATGTTTTTGAGGGAGTATATTT 57.520 29.630 0.00 0.00 31.88 1.40
52 53 7.489574 TTTTTCAATGGTTTGGATTGCTTAC 57.510 32.000 0.00 0.00 33.44 2.34
53 54 4.799564 TCAATGGTTTGGATTGCTTACC 57.200 40.909 0.00 0.00 33.44 2.85
54 55 4.155709 TCAATGGTTTGGATTGCTTACCA 58.844 39.130 0.00 0.00 42.57 3.25
55 56 4.021544 TCAATGGTTTGGATTGCTTACCAC 60.022 41.667 0.00 0.00 41.31 4.16
56 57 2.950781 TGGTTTGGATTGCTTACCACA 58.049 42.857 0.00 0.00 34.13 4.17
57 58 3.505386 TGGTTTGGATTGCTTACCACAT 58.495 40.909 0.00 0.00 34.13 3.21
58 59 3.257873 TGGTTTGGATTGCTTACCACATG 59.742 43.478 0.00 0.00 34.13 3.21
59 60 3.258123 GGTTTGGATTGCTTACCACATGT 59.742 43.478 0.00 0.00 35.81 3.21
60 61 4.236935 GTTTGGATTGCTTACCACATGTG 58.763 43.478 19.31 19.31 35.81 3.21
61 62 3.153369 TGGATTGCTTACCACATGTGT 57.847 42.857 23.79 14.29 0.00 3.72
62 63 3.081061 TGGATTGCTTACCACATGTGTC 58.919 45.455 23.79 11.95 0.00 3.67
63 64 3.081061 GGATTGCTTACCACATGTGTCA 58.919 45.455 23.79 8.71 0.00 3.58
64 65 3.696051 GGATTGCTTACCACATGTGTCAT 59.304 43.478 23.79 11.74 0.00 3.06
65 66 4.201950 GGATTGCTTACCACATGTGTCATC 60.202 45.833 23.79 12.80 0.00 2.92
66 67 3.701205 TGCTTACCACATGTGTCATCT 57.299 42.857 23.79 4.11 0.00 2.90
67 68 3.337358 TGCTTACCACATGTGTCATCTG 58.663 45.455 23.79 10.21 0.00 2.90
68 69 2.679837 GCTTACCACATGTGTCATCTGG 59.320 50.000 23.79 9.74 0.00 3.86
69 70 3.869912 GCTTACCACATGTGTCATCTGGT 60.870 47.826 23.79 15.00 0.00 4.00
70 71 2.957402 ACCACATGTGTCATCTGGTT 57.043 45.000 23.79 0.00 0.00 3.67
71 72 3.228188 ACCACATGTGTCATCTGGTTT 57.772 42.857 23.79 0.00 0.00 3.27
72 73 3.565307 ACCACATGTGTCATCTGGTTTT 58.435 40.909 23.79 0.00 0.00 2.43
73 74 3.960102 ACCACATGTGTCATCTGGTTTTT 59.040 39.130 23.79 0.00 0.00 1.94
74 75 4.202141 ACCACATGTGTCATCTGGTTTTTG 60.202 41.667 23.79 6.29 0.00 2.44
75 76 4.037803 CCACATGTGTCATCTGGTTTTTGA 59.962 41.667 23.79 0.00 0.00 2.69
76 77 5.217393 CACATGTGTCATCTGGTTTTTGAG 58.783 41.667 18.03 0.00 0.00 3.02
77 78 5.008911 CACATGTGTCATCTGGTTTTTGAGA 59.991 40.000 18.03 0.00 0.00 3.27
78 79 5.240183 ACATGTGTCATCTGGTTTTTGAGAG 59.760 40.000 0.00 0.00 0.00 3.20
79 80 5.034852 TGTGTCATCTGGTTTTTGAGAGA 57.965 39.130 0.00 0.00 0.00 3.10
80 81 5.436175 TGTGTCATCTGGTTTTTGAGAGAA 58.564 37.500 0.00 0.00 0.00 2.87
81 82 6.064060 TGTGTCATCTGGTTTTTGAGAGAAT 58.936 36.000 0.00 0.00 0.00 2.40
82 83 7.223584 TGTGTCATCTGGTTTTTGAGAGAATA 58.776 34.615 0.00 0.00 0.00 1.75
83 84 7.884877 TGTGTCATCTGGTTTTTGAGAGAATAT 59.115 33.333 0.00 0.00 0.00 1.28
84 85 8.180267 GTGTCATCTGGTTTTTGAGAGAATATG 58.820 37.037 0.00 0.00 0.00 1.78
85 86 7.884877 TGTCATCTGGTTTTTGAGAGAATATGT 59.115 33.333 0.00 0.00 0.00 2.29
86 87 8.734386 GTCATCTGGTTTTTGAGAGAATATGTT 58.266 33.333 0.00 0.00 0.00 2.71
87 88 8.733458 TCATCTGGTTTTTGAGAGAATATGTTG 58.267 33.333 0.00 0.00 0.00 3.33
88 89 8.733458 CATCTGGTTTTTGAGAGAATATGTTGA 58.267 33.333 0.00 0.00 0.00 3.18
89 90 8.868522 TCTGGTTTTTGAGAGAATATGTTGAT 57.131 30.769 0.00 0.00 0.00 2.57
90 91 8.733458 TCTGGTTTTTGAGAGAATATGTTGATG 58.267 33.333 0.00 0.00 0.00 3.07
91 92 8.634335 TGGTTTTTGAGAGAATATGTTGATGA 57.366 30.769 0.00 0.00 0.00 2.92
92 93 8.514594 TGGTTTTTGAGAGAATATGTTGATGAC 58.485 33.333 0.00 0.00 0.00 3.06
93 94 8.514594 GGTTTTTGAGAGAATATGTTGATGACA 58.485 33.333 0.00 0.00 43.71 3.58
98 99 9.889128 TTGAGAGAATATGTTGATGACATGTTA 57.111 29.630 0.00 0.00 46.21 2.41
99 100 9.889128 TGAGAGAATATGTTGATGACATGTTAA 57.111 29.630 0.00 0.00 46.21 2.01
108 109 7.939782 TGTTGATGACATGTTAAAACACATCT 58.060 30.769 17.37 4.45 42.51 2.90
109 110 9.061435 TGTTGATGACATGTTAAAACACATCTA 57.939 29.630 17.37 10.50 42.51 1.98
110 111 9.546909 GTTGATGACATGTTAAAACACATCTAG 57.453 33.333 17.37 0.00 42.51 2.43
111 112 9.500785 TTGATGACATGTTAAAACACATCTAGA 57.499 29.630 17.37 0.00 42.51 2.43
112 113 9.671279 TGATGACATGTTAAAACACATCTAGAT 57.329 29.630 17.37 0.00 42.51 1.98
113 114 9.926751 GATGACATGTTAAAACACATCTAGATG 57.073 33.333 27.63 27.63 42.51 2.90
114 115 9.671279 ATGACATGTTAAAACACATCTAGATGA 57.329 29.630 34.16 12.02 42.51 2.92
115 116 9.154847 TGACATGTTAAAACACATCTAGATGAG 57.845 33.333 34.16 28.70 42.51 2.90
116 117 9.371136 GACATGTTAAAACACATCTAGATGAGA 57.629 33.333 34.16 12.66 42.51 3.27
117 118 9.896645 ACATGTTAAAACACATCTAGATGAGAT 57.103 29.630 34.16 20.82 42.31 2.75
130 131 6.964908 TCTAGATGAGATGCTACTTTCTTCG 58.035 40.000 0.00 0.00 0.00 3.79
131 132 5.590530 AGATGAGATGCTACTTTCTTCGT 57.409 39.130 0.00 0.00 0.00 3.85
132 133 5.587289 AGATGAGATGCTACTTTCTTCGTC 58.413 41.667 0.00 0.00 0.00 4.20
133 134 4.111375 TGAGATGCTACTTTCTTCGTCC 57.889 45.455 0.00 0.00 0.00 4.79
134 135 3.764434 TGAGATGCTACTTTCTTCGTCCT 59.236 43.478 0.00 0.00 0.00 3.85
135 136 4.948004 TGAGATGCTACTTTCTTCGTCCTA 59.052 41.667 0.00 0.00 0.00 2.94
136 137 5.417894 TGAGATGCTACTTTCTTCGTCCTAA 59.582 40.000 0.00 0.00 0.00 2.69
137 138 6.071560 TGAGATGCTACTTTCTTCGTCCTAAA 60.072 38.462 0.00 0.00 0.00 1.85
138 139 6.698380 AGATGCTACTTTCTTCGTCCTAAAA 58.302 36.000 0.00 0.00 0.00 1.52
139 140 7.331791 AGATGCTACTTTCTTCGTCCTAAAAT 58.668 34.615 0.00 0.00 0.00 1.82
140 141 8.475639 AGATGCTACTTTCTTCGTCCTAAAATA 58.524 33.333 0.00 0.00 0.00 1.40
141 142 9.095065 GATGCTACTTTCTTCGTCCTAAAATAA 57.905 33.333 0.00 0.00 0.00 1.40
142 143 8.475331 TGCTACTTTCTTCGTCCTAAAATAAG 57.525 34.615 0.00 0.00 0.00 1.73
143 144 8.092687 TGCTACTTTCTTCGTCCTAAAATAAGT 58.907 33.333 0.00 0.00 0.00 2.24
144 145 8.381387 GCTACTTTCTTCGTCCTAAAATAAGTG 58.619 37.037 0.00 0.00 0.00 3.16
145 146 9.420551 CTACTTTCTTCGTCCTAAAATAAGTGT 57.579 33.333 0.00 0.00 0.00 3.55
146 147 8.307921 ACTTTCTTCGTCCTAAAATAAGTGTC 57.692 34.615 0.00 0.00 0.00 3.67
147 148 8.148999 ACTTTCTTCGTCCTAAAATAAGTGTCT 58.851 33.333 0.00 0.00 0.00 3.41
148 149 8.530269 TTTCTTCGTCCTAAAATAAGTGTCTC 57.470 34.615 0.00 0.00 0.00 3.36
149 150 7.223260 TCTTCGTCCTAAAATAAGTGTCTCA 57.777 36.000 0.00 0.00 0.00 3.27
150 151 7.663827 TCTTCGTCCTAAAATAAGTGTCTCAA 58.336 34.615 0.00 0.00 0.00 3.02
151 152 7.597743 TCTTCGTCCTAAAATAAGTGTCTCAAC 59.402 37.037 0.00 0.00 0.00 3.18
152 153 6.989659 TCGTCCTAAAATAAGTGTCTCAACT 58.010 36.000 0.00 0.00 0.00 3.16
153 154 7.439381 TCGTCCTAAAATAAGTGTCTCAACTT 58.561 34.615 0.00 0.00 42.89 2.66
154 155 7.929785 TCGTCCTAAAATAAGTGTCTCAACTTT 59.070 33.333 0.00 0.00 40.77 2.66
155 156 8.009974 CGTCCTAAAATAAGTGTCTCAACTTTG 58.990 37.037 0.00 0.00 40.77 2.77
156 157 8.837389 GTCCTAAAATAAGTGTCTCAACTTTGT 58.163 33.333 0.00 0.00 40.77 2.83
165 166 8.788325 AAGTGTCTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
166 167 9.880157 AAGTGTCTCAACTTTGTACTAACTTTA 57.120 29.630 0.00 0.00 37.05 1.85
167 168 9.530633 AGTGTCTCAACTTTGTACTAACTTTAG 57.469 33.333 0.00 0.00 36.82 1.85
168 169 9.310716 GTGTCTCAACTTTGTACTAACTTTAGT 57.689 33.333 6.85 6.85 45.39 2.24
192 193 8.989980 AGTACAAAGTTGTATTAAGCTTGAGAC 58.010 33.333 9.86 9.33 44.59 3.36
193 194 7.801716 ACAAAGTTGTATTAAGCTTGAGACA 57.198 32.000 14.00 14.00 40.16 3.41
194 195 7.639945 ACAAAGTTGTATTAAGCTTGAGACAC 58.360 34.615 17.19 12.50 40.16 3.67
195 196 7.499232 ACAAAGTTGTATTAAGCTTGAGACACT 59.501 33.333 17.19 14.21 40.16 3.55
196 197 8.345565 CAAAGTTGTATTAAGCTTGAGACACTT 58.654 33.333 17.19 18.16 0.00 3.16
197 198 9.555727 AAAGTTGTATTAAGCTTGAGACACTTA 57.444 29.630 17.19 1.83 0.00 2.24
198 199 9.726438 AAGTTGTATTAAGCTTGAGACACTTAT 57.274 29.630 17.19 3.23 0.00 1.73
199 200 9.726438 AGTTGTATTAAGCTTGAGACACTTATT 57.274 29.630 17.19 0.00 0.00 1.40
205 206 8.902540 TTAAGCTTGAGACACTTATTTTGAGA 57.097 30.769 9.86 0.00 0.00 3.27
206 207 6.793492 AGCTTGAGACACTTATTTTGAGAC 57.207 37.500 0.00 0.00 0.00 3.36
207 208 5.406780 AGCTTGAGACACTTATTTTGAGACG 59.593 40.000 0.00 0.00 0.00 4.18
208 209 5.389935 GCTTGAGACACTTATTTTGAGACGG 60.390 44.000 0.00 0.00 0.00 4.79
209 210 5.462530 TGAGACACTTATTTTGAGACGGA 57.537 39.130 0.00 0.00 0.00 4.69
210 211 5.470368 TGAGACACTTATTTTGAGACGGAG 58.530 41.667 0.00 0.00 0.00 4.63
211 212 4.822026 AGACACTTATTTTGAGACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
212 213 4.527038 AGACACTTATTTTGAGACGGAGGA 59.473 41.667 0.00 0.00 0.00 3.71
213 214 5.011738 AGACACTTATTTTGAGACGGAGGAA 59.988 40.000 0.00 0.00 0.00 3.36
214 215 5.238583 ACACTTATTTTGAGACGGAGGAAG 58.761 41.667 0.00 0.00 0.00 3.46
215 216 4.093556 CACTTATTTTGAGACGGAGGAAGC 59.906 45.833 0.00 0.00 0.00 3.86
216 217 2.859165 ATTTTGAGACGGAGGAAGCA 57.141 45.000 0.00 0.00 0.00 3.91
217 218 2.859165 TTTTGAGACGGAGGAAGCAT 57.141 45.000 0.00 0.00 0.00 3.79
218 219 2.859165 TTTGAGACGGAGGAAGCATT 57.141 45.000 0.00 0.00 0.00 3.56
219 220 2.859165 TTGAGACGGAGGAAGCATTT 57.141 45.000 0.00 0.00 0.00 2.32
220 221 2.859165 TGAGACGGAGGAAGCATTTT 57.141 45.000 0.00 0.00 0.00 1.82
221 222 3.973206 TGAGACGGAGGAAGCATTTTA 57.027 42.857 0.00 0.00 0.00 1.52
222 223 3.596214 TGAGACGGAGGAAGCATTTTAC 58.404 45.455 0.00 0.00 0.00 2.01
223 224 3.007506 TGAGACGGAGGAAGCATTTTACA 59.992 43.478 0.00 0.00 0.00 2.41
224 225 4.192317 GAGACGGAGGAAGCATTTTACAT 58.808 43.478 0.00 0.00 0.00 2.29
225 226 4.192317 AGACGGAGGAAGCATTTTACATC 58.808 43.478 0.00 0.00 0.00 3.06
226 227 4.080863 AGACGGAGGAAGCATTTTACATCT 60.081 41.667 0.00 0.00 0.00 2.90
227 228 5.128827 AGACGGAGGAAGCATTTTACATCTA 59.871 40.000 0.00 0.00 0.00 1.98
228 229 5.360591 ACGGAGGAAGCATTTTACATCTAG 58.639 41.667 0.00 0.00 0.00 2.43
229 230 5.128827 ACGGAGGAAGCATTTTACATCTAGA 59.871 40.000 0.00 0.00 0.00 2.43
230 231 5.463724 CGGAGGAAGCATTTTACATCTAGAC 59.536 44.000 0.00 0.00 0.00 2.59
231 232 6.349300 GGAGGAAGCATTTTACATCTAGACA 58.651 40.000 0.00 0.00 0.00 3.41
232 233 6.995091 GGAGGAAGCATTTTACATCTAGACAT 59.005 38.462 0.00 0.00 0.00 3.06
233 234 7.041508 GGAGGAAGCATTTTACATCTAGACATG 60.042 40.741 0.00 0.00 0.00 3.21
234 235 7.568349 AGGAAGCATTTTACATCTAGACATGA 58.432 34.615 0.00 0.00 0.00 3.07
235 236 8.049117 AGGAAGCATTTTACATCTAGACATGAA 58.951 33.333 0.00 0.00 0.00 2.57
236 237 8.677300 GGAAGCATTTTACATCTAGACATGAAA 58.323 33.333 0.00 0.00 0.00 2.69
264 265 8.413899 GGTAACTCACATTTAAGTCTCTCATC 57.586 38.462 0.00 0.00 0.00 2.92
265 266 8.035394 GGTAACTCACATTTAAGTCTCTCATCA 58.965 37.037 0.00 0.00 0.00 3.07
266 267 7.897575 AACTCACATTTAAGTCTCTCATCAC 57.102 36.000 0.00 0.00 0.00 3.06
267 268 6.997655 ACTCACATTTAAGTCTCTCATCACA 58.002 36.000 0.00 0.00 0.00 3.58
268 269 6.870965 ACTCACATTTAAGTCTCTCATCACAC 59.129 38.462 0.00 0.00 0.00 3.82
269 270 5.863935 TCACATTTAAGTCTCTCATCACACG 59.136 40.000 0.00 0.00 0.00 4.49
270 271 5.863935 CACATTTAAGTCTCTCATCACACGA 59.136 40.000 0.00 0.00 0.00 4.35
271 272 6.533012 CACATTTAAGTCTCTCATCACACGAT 59.467 38.462 0.00 0.00 0.00 3.73
272 273 6.754209 ACATTTAAGTCTCTCATCACACGATC 59.246 38.462 0.00 0.00 0.00 3.69
273 274 5.897377 TTAAGTCTCTCATCACACGATCA 57.103 39.130 0.00 0.00 0.00 2.92
274 275 4.790765 AAGTCTCTCATCACACGATCAA 57.209 40.909 0.00 0.00 0.00 2.57
275 276 4.368874 AGTCTCTCATCACACGATCAAG 57.631 45.455 0.00 0.00 0.00 3.02
276 277 4.013050 AGTCTCTCATCACACGATCAAGA 58.987 43.478 0.00 0.00 0.00 3.02
277 278 4.101942 GTCTCTCATCACACGATCAAGAC 58.898 47.826 0.00 0.00 30.43 3.01
278 279 4.013050 TCTCTCATCACACGATCAAGACT 58.987 43.478 0.00 0.00 0.00 3.24
279 280 4.102035 TCTCATCACACGATCAAGACTG 57.898 45.455 0.00 0.00 0.00 3.51
280 281 3.507622 TCTCATCACACGATCAAGACTGT 59.492 43.478 0.00 0.00 0.00 3.55
281 282 4.700213 TCTCATCACACGATCAAGACTGTA 59.300 41.667 0.00 0.00 0.00 2.74
282 283 5.183140 TCTCATCACACGATCAAGACTGTAA 59.817 40.000 0.00 0.00 0.00 2.41
283 284 5.965922 TCATCACACGATCAAGACTGTAAT 58.034 37.500 0.00 0.00 0.00 1.89
284 285 6.398095 TCATCACACGATCAAGACTGTAATT 58.602 36.000 0.00 0.00 0.00 1.40
285 286 6.873605 TCATCACACGATCAAGACTGTAATTT 59.126 34.615 0.00 0.00 0.00 1.82
286 287 7.387673 TCATCACACGATCAAGACTGTAATTTT 59.612 33.333 0.00 0.00 0.00 1.82
287 288 7.117241 TCACACGATCAAGACTGTAATTTTC 57.883 36.000 0.00 0.00 0.00 2.29
288 289 6.009474 CACACGATCAAGACTGTAATTTTCG 58.991 40.000 0.00 0.00 0.00 3.46
289 290 5.694910 ACACGATCAAGACTGTAATTTTCGT 59.305 36.000 0.00 0.00 37.75 3.85
290 291 6.009474 CACGATCAAGACTGTAATTTTCGTG 58.991 40.000 15.58 15.58 44.97 4.35
291 292 5.015733 CGATCAAGACTGTAATTTTCGTGC 58.984 41.667 0.00 0.00 0.00 5.34
292 293 5.389411 CGATCAAGACTGTAATTTTCGTGCA 60.389 40.000 0.00 0.00 0.00 4.57
293 294 5.743026 TCAAGACTGTAATTTTCGTGCAA 57.257 34.783 0.00 0.00 0.00 4.08
294 295 6.125327 TCAAGACTGTAATTTTCGTGCAAA 57.875 33.333 0.00 0.00 0.00 3.68
295 296 6.734137 TCAAGACTGTAATTTTCGTGCAAAT 58.266 32.000 0.00 0.00 0.00 2.32
296 297 7.199766 TCAAGACTGTAATTTTCGTGCAAATT 58.800 30.769 0.00 0.00 39.28 1.82
297 298 7.704472 TCAAGACTGTAATTTTCGTGCAAATTT 59.296 29.630 0.00 0.00 37.50 1.82
298 299 8.327429 CAAGACTGTAATTTTCGTGCAAATTTT 58.673 29.630 0.00 0.00 37.50 1.82
299 300 7.840489 AGACTGTAATTTTCGTGCAAATTTTG 58.160 30.769 4.72 4.72 37.50 2.44
300 301 7.491048 AGACTGTAATTTTCGTGCAAATTTTGT 59.509 29.630 10.65 0.00 37.50 2.83
301 302 7.969314 ACTGTAATTTTCGTGCAAATTTTGTT 58.031 26.923 10.65 0.00 37.50 2.83
302 303 9.088512 ACTGTAATTTTCGTGCAAATTTTGTTA 57.911 25.926 10.65 0.00 37.50 2.41
303 304 9.566624 CTGTAATTTTCGTGCAAATTTTGTTAG 57.433 29.630 10.65 3.03 37.50 2.34
304 305 9.302345 TGTAATTTTCGTGCAAATTTTGTTAGA 57.698 25.926 10.65 5.09 37.50 2.10
307 308 9.862585 AATTTTCGTGCAAATTTTGTTAGAATC 57.137 25.926 10.65 0.00 33.38 2.52
308 309 7.401484 TTTCGTGCAAATTTTGTTAGAATCC 57.599 32.000 10.65 0.00 0.00 3.01
309 310 5.465935 TCGTGCAAATTTTGTTAGAATCCC 58.534 37.500 10.65 0.00 0.00 3.85
310 311 4.323336 CGTGCAAATTTTGTTAGAATCCCG 59.677 41.667 10.65 0.00 0.00 5.14
311 312 5.465935 GTGCAAATTTTGTTAGAATCCCGA 58.534 37.500 10.65 0.00 0.00 5.14
312 313 5.923684 GTGCAAATTTTGTTAGAATCCCGAA 59.076 36.000 10.65 0.00 0.00 4.30
313 314 6.422400 GTGCAAATTTTGTTAGAATCCCGAAA 59.578 34.615 10.65 0.00 0.00 3.46
314 315 6.422400 TGCAAATTTTGTTAGAATCCCGAAAC 59.578 34.615 10.65 0.00 0.00 2.78
315 316 6.128661 GCAAATTTTGTTAGAATCCCGAAACC 60.129 38.462 10.65 0.00 0.00 3.27
316 317 4.752661 TTTTGTTAGAATCCCGAAACCG 57.247 40.909 0.00 0.00 0.00 4.44
317 318 1.729284 TGTTAGAATCCCGAAACCGC 58.271 50.000 0.00 0.00 0.00 5.68
318 319 1.002201 TGTTAGAATCCCGAAACCGCA 59.998 47.619 0.00 0.00 0.00 5.69
319 320 1.664151 GTTAGAATCCCGAAACCGCAG 59.336 52.381 0.00 0.00 0.00 5.18
320 321 0.461339 TAGAATCCCGAAACCGCAGC 60.461 55.000 0.00 0.00 0.00 5.25
321 322 2.750237 AATCCCGAAACCGCAGCC 60.750 61.111 0.00 0.00 0.00 4.85
322 323 3.561120 AATCCCGAAACCGCAGCCA 62.561 57.895 0.00 0.00 0.00 4.75
323 324 3.561120 ATCCCGAAACCGCAGCCAA 62.561 57.895 0.00 0.00 0.00 4.52
324 325 4.038080 CCCGAAACCGCAGCCAAC 62.038 66.667 0.00 0.00 0.00 3.77
325 326 4.383602 CCGAAACCGCAGCCAACG 62.384 66.667 0.00 0.00 0.00 4.10
334 335 3.118454 CAGCCAACGCGGACGATT 61.118 61.111 12.47 0.00 43.93 3.34
335 336 2.358247 AGCCAACGCGGACGATTT 60.358 55.556 12.47 0.00 43.93 2.17
336 337 2.097728 GCCAACGCGGACGATTTC 59.902 61.111 12.47 0.00 43.93 2.17
337 338 2.394136 CCAACGCGGACGATTTCG 59.606 61.111 12.47 0.00 43.93 3.46
338 339 2.394136 CAACGCGGACGATTTCGG 59.606 61.111 12.47 0.00 43.93 4.30
339 340 2.812178 AACGCGGACGATTTCGGG 60.812 61.111 12.47 0.00 43.93 5.14
340 341 3.285523 AACGCGGACGATTTCGGGA 62.286 57.895 12.47 0.00 43.93 5.14
341 342 2.507547 CGCGGACGATTTCGGGAA 60.508 61.111 0.00 0.00 43.93 3.97
342 343 2.095847 CGCGGACGATTTCGGGAAA 61.096 57.895 0.00 0.00 43.93 3.13
343 344 1.713830 GCGGACGATTTCGGGAAAG 59.286 57.895 4.84 0.00 44.95 2.62
344 345 1.713830 CGGACGATTTCGGGAAAGC 59.286 57.895 4.84 0.00 44.95 3.51
345 346 0.739813 CGGACGATTTCGGGAAAGCT 60.740 55.000 7.68 0.00 44.95 3.74
346 347 0.727398 GGACGATTTCGGGAAAGCTG 59.273 55.000 7.68 4.40 44.95 4.24
347 348 0.727398 GACGATTTCGGGAAAGCTGG 59.273 55.000 7.68 0.00 44.95 4.85
348 349 0.676782 ACGATTTCGGGAAAGCTGGG 60.677 55.000 7.68 0.00 44.95 4.45
349 350 1.809869 GATTTCGGGAAAGCTGGGC 59.190 57.895 2.38 0.00 34.20 5.36
350 351 0.681243 GATTTCGGGAAAGCTGGGCT 60.681 55.000 2.38 0.00 42.56 5.19
351 352 0.681243 ATTTCGGGAAAGCTGGGCTC 60.681 55.000 0.00 0.00 38.25 4.70
352 353 3.605749 TTCGGGAAAGCTGGGCTCG 62.606 63.158 0.00 0.00 38.25 5.03
353 354 4.082523 CGGGAAAGCTGGGCTCGA 62.083 66.667 0.00 0.00 38.25 4.04
354 355 2.124942 GGGAAAGCTGGGCTCGAG 60.125 66.667 8.45 8.45 38.25 4.04
355 356 2.821810 GGAAAGCTGGGCTCGAGC 60.822 66.667 29.38 29.38 38.25 5.03
356 357 3.191539 GAAAGCTGGGCTCGAGCG 61.192 66.667 29.81 17.97 41.61 5.03
372 373 4.005472 CGCCGAATCGCTGCATCC 62.005 66.667 0.00 0.00 0.00 3.51
373 374 2.896854 GCCGAATCGCTGCATCCA 60.897 61.111 0.00 0.00 0.00 3.41
374 375 3.017323 CCGAATCGCTGCATCCAC 58.983 61.111 0.00 0.00 0.00 4.02
375 376 1.522355 CCGAATCGCTGCATCCACT 60.522 57.895 0.00 0.00 0.00 4.00
376 377 1.091771 CCGAATCGCTGCATCCACTT 61.092 55.000 0.00 0.00 0.00 3.16
377 378 0.729116 CGAATCGCTGCATCCACTTT 59.271 50.000 0.00 0.00 0.00 2.66
378 379 1.131126 CGAATCGCTGCATCCACTTTT 59.869 47.619 0.00 0.00 0.00 2.27
379 380 2.789092 CGAATCGCTGCATCCACTTTTC 60.789 50.000 0.00 0.00 0.00 2.29
380 381 2.119801 ATCGCTGCATCCACTTTTCT 57.880 45.000 0.00 0.00 0.00 2.52
381 382 1.442769 TCGCTGCATCCACTTTTCTC 58.557 50.000 0.00 0.00 0.00 2.87
382 383 1.002430 TCGCTGCATCCACTTTTCTCT 59.998 47.619 0.00 0.00 0.00 3.10
383 384 2.233676 TCGCTGCATCCACTTTTCTCTA 59.766 45.455 0.00 0.00 0.00 2.43
384 385 3.002791 CGCTGCATCCACTTTTCTCTAA 58.997 45.455 0.00 0.00 0.00 2.10
385 386 3.181516 CGCTGCATCCACTTTTCTCTAAC 60.182 47.826 0.00 0.00 0.00 2.34
386 387 4.006319 GCTGCATCCACTTTTCTCTAACT 58.994 43.478 0.00 0.00 0.00 2.24
387 388 4.457257 GCTGCATCCACTTTTCTCTAACTT 59.543 41.667 0.00 0.00 0.00 2.66
388 389 5.643777 GCTGCATCCACTTTTCTCTAACTTA 59.356 40.000 0.00 0.00 0.00 2.24
389 390 6.149474 GCTGCATCCACTTTTCTCTAACTTAA 59.851 38.462 0.00 0.00 0.00 1.85
390 391 7.625185 GCTGCATCCACTTTTCTCTAACTTAAG 60.625 40.741 0.00 0.00 0.00 1.85
391 392 7.224297 TGCATCCACTTTTCTCTAACTTAAGT 58.776 34.615 1.12 1.12 0.00 2.24
392 393 7.719633 TGCATCCACTTTTCTCTAACTTAAGTT 59.280 33.333 23.58 23.58 41.73 2.66
393 394 9.216117 GCATCCACTTTTCTCTAACTTAAGTTA 57.784 33.333 23.31 23.31 39.31 2.24
405 406 4.217836 ACTTAAGTTAGGGCTTACAGGC 57.782 45.455 1.12 0.00 40.51 4.85
406 407 2.973694 TAAGTTAGGGCTTACAGGCG 57.026 50.000 0.00 0.00 42.43 5.52
407 408 0.981943 AAGTTAGGGCTTACAGGCGT 59.018 50.000 0.00 0.00 42.43 5.68
408 409 1.856629 AGTTAGGGCTTACAGGCGTA 58.143 50.000 0.00 0.00 42.43 4.42
409 410 2.395619 AGTTAGGGCTTACAGGCGTAT 58.604 47.619 1.14 0.00 42.43 3.06
410 411 2.364647 AGTTAGGGCTTACAGGCGTATC 59.635 50.000 1.14 1.48 42.43 2.24
411 412 2.076207 TAGGGCTTACAGGCGTATCA 57.924 50.000 0.00 0.00 42.43 2.15
412 413 1.200519 AGGGCTTACAGGCGTATCAA 58.799 50.000 0.00 0.00 42.43 2.57
413 414 1.134491 AGGGCTTACAGGCGTATCAAC 60.134 52.381 0.00 0.00 42.43 3.18
414 415 1.134491 GGGCTTACAGGCGTATCAACT 60.134 52.381 0.00 0.00 42.43 3.16
415 416 2.629051 GGCTTACAGGCGTATCAACTT 58.371 47.619 0.00 0.00 0.00 2.66
416 417 3.431207 GGGCTTACAGGCGTATCAACTTA 60.431 47.826 0.00 0.00 42.43 2.24
417 418 3.554731 GGCTTACAGGCGTATCAACTTAC 59.445 47.826 0.00 0.00 0.00 2.34
418 419 4.178540 GCTTACAGGCGTATCAACTTACA 58.821 43.478 0.00 0.00 0.00 2.41
419 420 4.628333 GCTTACAGGCGTATCAACTTACAA 59.372 41.667 0.00 0.00 0.00 2.41
420 421 5.220416 GCTTACAGGCGTATCAACTTACAAG 60.220 44.000 0.00 0.00 0.00 3.16
421 422 4.267349 ACAGGCGTATCAACTTACAAGT 57.733 40.909 0.00 0.00 42.04 3.16
423 424 5.061179 ACAGGCGTATCAACTTACAAGTTT 58.939 37.500 4.61 0.00 46.52 2.66
424 425 6.225318 ACAGGCGTATCAACTTACAAGTTTA 58.775 36.000 4.61 0.00 46.52 2.01
425 426 6.146673 ACAGGCGTATCAACTTACAAGTTTAC 59.853 38.462 4.61 5.82 46.52 2.01
426 427 5.640783 AGGCGTATCAACTTACAAGTTTACC 59.359 40.000 4.61 1.83 46.52 2.85
427 428 5.409214 GGCGTATCAACTTACAAGTTTACCA 59.591 40.000 4.61 0.00 46.52 3.25
428 429 6.301861 GCGTATCAACTTACAAGTTTACCAC 58.698 40.000 4.61 1.47 46.52 4.16
429 430 6.073657 GCGTATCAACTTACAAGTTTACCACA 60.074 38.462 4.61 0.00 46.52 4.17
430 431 7.360607 GCGTATCAACTTACAAGTTTACCACAT 60.361 37.037 4.61 0.00 46.52 3.21
431 432 8.166706 CGTATCAACTTACAAGTTTACCACATC 58.833 37.037 4.61 0.00 46.52 3.06
432 433 8.995220 GTATCAACTTACAAGTTTACCACATCA 58.005 33.333 4.61 0.00 46.52 3.07
433 434 7.867305 TCAACTTACAAGTTTACCACATCAA 57.133 32.000 4.61 0.00 46.52 2.57
434 435 8.282455 TCAACTTACAAGTTTACCACATCAAA 57.718 30.769 4.61 0.00 46.52 2.69
435 436 8.740906 TCAACTTACAAGTTTACCACATCAAAA 58.259 29.630 4.61 0.00 46.52 2.44
436 437 9.360093 CAACTTACAAGTTTACCACATCAAAAA 57.640 29.630 4.61 0.00 46.52 1.94
450 451 9.898152 ACCACATCAAAAATAAAAGGAAAAAGA 57.102 25.926 0.00 0.00 0.00 2.52
465 466 9.865321 AAAGGAAAAAGAAACTTACAAGGTTAC 57.135 29.630 0.00 0.00 35.74 2.50
466 467 8.004087 AGGAAAAAGAAACTTACAAGGTTACC 57.996 34.615 0.00 0.00 35.74 2.85
467 468 7.616542 AGGAAAAAGAAACTTACAAGGTTACCA 59.383 33.333 3.51 0.00 35.74 3.25
468 469 8.252417 GGAAAAAGAAACTTACAAGGTTACCAA 58.748 33.333 3.51 0.00 35.74 3.67
469 470 9.811995 GAAAAAGAAACTTACAAGGTTACCAAT 57.188 29.630 3.51 0.00 35.74 3.16
471 472 9.594478 AAAAGAAACTTACAAGGTTACCAATTG 57.406 29.630 3.51 2.83 35.74 2.32
472 473 8.528044 AAGAAACTTACAAGGTTACCAATTGA 57.472 30.769 7.12 0.00 35.74 2.57
473 474 8.528044 AGAAACTTACAAGGTTACCAATTGAA 57.472 30.769 7.12 0.00 35.74 2.69
474 475 8.630037 AGAAACTTACAAGGTTACCAATTGAAG 58.370 33.333 7.12 10.38 35.74 3.02
475 476 6.327279 ACTTACAAGGTTACCAATTGAAGC 57.673 37.500 7.12 3.97 0.00 3.86
476 477 5.243060 ACTTACAAGGTTACCAATTGAAGCC 59.757 40.000 7.12 6.29 0.00 4.35
477 478 3.844640 ACAAGGTTACCAATTGAAGCCT 58.155 40.909 7.12 8.55 0.00 4.58
483 484 6.993079 AGGTTACCAATTGAAGCCTAAAAAG 58.007 36.000 7.12 0.00 0.00 2.27
563 565 3.520290 ATTATCGAGAGCCAAACGTCA 57.480 42.857 0.00 0.00 0.00 4.35
565 567 0.603569 ATCGAGAGCCAAACGTCACT 59.396 50.000 0.00 0.00 0.00 3.41
712 722 0.373716 GAAAGGGTACTGCATTCGCG 59.626 55.000 0.00 0.00 42.97 5.87
725 735 1.638388 ATTCGCGACACGTAGGACGA 61.638 55.000 9.15 0.91 46.05 4.20
763 773 1.144496 AAGTTGGCACGTACGTGGT 59.856 52.632 40.17 10.82 45.49 4.16
765 775 0.604578 AGTTGGCACGTACGTGGTAT 59.395 50.000 40.17 10.04 45.49 2.73
768 778 1.249469 TGGCACGTACGTGGTATGGA 61.249 55.000 40.17 4.70 45.49 3.41
795 805 1.925185 CATCGCTATCCATGCAGATCG 59.075 52.381 0.00 0.00 0.00 3.69
869 879 1.444553 GCCTTCGTCCACACTCTCG 60.445 63.158 0.00 0.00 0.00 4.04
905 915 3.784701 ATATACCACGATCCATCTCGC 57.215 47.619 0.00 0.00 42.35 5.03
918 928 2.558554 ATCTCGCCGAGAAACCCACG 62.559 60.000 22.03 0.00 42.27 4.94
991 1001 1.268899 AGCTTTCAAGTGTGCATCTGC 59.731 47.619 0.00 0.00 42.50 4.26
992 1002 1.668047 GCTTTCAAGTGTGCATCTGCC 60.668 52.381 0.00 0.00 41.18 4.85
996 1006 1.347378 TCAAGTGTGCATCTGCCTACA 59.653 47.619 0.00 0.00 41.18 2.74
1135 1145 4.752879 GCTACAACCAGCCGGCGA 62.753 66.667 23.20 0.33 35.40 5.54
1374 1384 2.741878 GCTGGCGTGGATGTACAAGTAT 60.742 50.000 0.00 0.00 0.00 2.12
1386 1396 0.736325 ACAAGTATCTGTCGCACGGC 60.736 55.000 0.00 0.00 0.00 5.68
1510 1520 2.733127 CGAACGCCGTAGACATGTT 58.267 52.632 0.00 0.00 0.00 2.71
1542 1562 1.897133 TCCTATGCGTTACCAGTGTGT 59.103 47.619 0.00 0.00 0.00 3.72
1543 1563 1.999735 CCTATGCGTTACCAGTGTGTG 59.000 52.381 0.00 0.00 0.00 3.82
1568 1588 3.939592 TGGATCGACGCCTCTATATGTAG 59.060 47.826 7.58 0.00 0.00 2.74
1598 1618 1.226888 CGAGCGGTGCTACTTACCC 60.227 63.158 0.00 0.00 39.88 3.69
1670 1698 7.621683 AGGGAGTTAAGAATAGATCTCTTGTGT 59.378 37.037 0.00 0.00 37.42 3.72
1672 1700 9.092876 GGAGTTAAGAATAGATCTCTTGTGTTG 57.907 37.037 0.00 0.00 37.42 3.33
1677 1705 7.251321 AGAATAGATCTCTTGTGTTGGTTCT 57.749 36.000 0.00 0.00 30.46 3.01
1712 1749 0.946221 CGCTGCTTCGTCTTCACCTT 60.946 55.000 0.00 0.00 0.00 3.50
1728 1767 5.310409 TCACCTTCAAGGACTTCTGATTT 57.690 39.130 11.59 0.00 37.67 2.17
1743 1782 1.069513 TGATTTGGAGTCCACGTCGTT 59.930 47.619 12.69 0.00 30.78 3.85
1758 1797 3.863424 ACGTCGTTCATATTACTGCCTTG 59.137 43.478 0.00 0.00 0.00 3.61
1759 1798 4.109766 CGTCGTTCATATTACTGCCTTGA 58.890 43.478 0.00 0.00 0.00 3.02
1760 1799 4.565166 CGTCGTTCATATTACTGCCTTGAA 59.435 41.667 0.00 0.00 0.00 2.69
1761 1800 5.500290 CGTCGTTCATATTACTGCCTTGAAC 60.500 44.000 0.00 0.00 41.58 3.18
1762 1801 5.350365 GTCGTTCATATTACTGCCTTGAACA 59.650 40.000 12.81 0.59 43.91 3.18
1763 1802 5.350365 TCGTTCATATTACTGCCTTGAACAC 59.650 40.000 12.81 0.00 43.91 3.32
1764 1803 5.560148 GTTCATATTACTGCCTTGAACACG 58.440 41.667 8.72 0.00 43.44 4.49
1765 1804 5.079689 TCATATTACTGCCTTGAACACGA 57.920 39.130 0.00 0.00 0.00 4.35
1766 1805 5.670485 TCATATTACTGCCTTGAACACGAT 58.330 37.500 0.00 0.00 0.00 3.73
1791 2024 2.411904 CTCGATTCCTTCTATGCTGCC 58.588 52.381 0.00 0.00 0.00 4.85
1796 2029 1.596477 CCTTCTATGCTGCCGCTCC 60.596 63.158 0.70 0.00 36.97 4.70
1802 2035 0.819259 TATGCTGCCGCTCCAATTCC 60.819 55.000 0.70 0.00 36.97 3.01
1813 2046 3.181450 CGCTCCAATTCCTAAATCCCTCT 60.181 47.826 0.00 0.00 0.00 3.69
1823 2056 7.808279 TTCCTAAATCCCTCTTCTGTTCTTA 57.192 36.000 0.00 0.00 0.00 2.10
1840 2073 6.035217 TGTTCTTAAAACTGTTTTAACGCCC 58.965 36.000 26.27 17.26 39.46 6.13
1841 2074 5.185668 TCTTAAAACTGTTTTAACGCCCC 57.814 39.130 26.27 0.00 39.46 5.80
1849 2082 4.123506 CTGTTTTAACGCCCCAACAATTT 58.876 39.130 0.00 0.00 0.00 1.82
1856 2089 1.539929 CGCCCCAACAATTTGCTTGAA 60.540 47.619 11.06 0.00 38.29 2.69
1881 2115 6.437928 TCGCACCTGAAATTGCATATTATTC 58.562 36.000 0.00 0.00 38.76 1.75
1882 2116 5.340403 CGCACCTGAAATTGCATATTATTCG 59.660 40.000 0.00 0.00 38.76 3.34
1898 2132 2.450609 TTCGTGCTACCTTCAGTTCC 57.549 50.000 0.00 0.00 0.00 3.62
1932 2166 1.523758 CAGCACCCCACAAGAACTAC 58.476 55.000 0.00 0.00 0.00 2.73
1933 2167 1.072331 CAGCACCCCACAAGAACTACT 59.928 52.381 0.00 0.00 0.00 2.57
1934 2168 1.348036 AGCACCCCACAAGAACTACTC 59.652 52.381 0.00 0.00 0.00 2.59
1935 2169 1.610886 GCACCCCACAAGAACTACTCC 60.611 57.143 0.00 0.00 0.00 3.85
1936 2170 1.003233 CACCCCACAAGAACTACTCCC 59.997 57.143 0.00 0.00 0.00 4.30
1937 2171 1.132495 ACCCCACAAGAACTACTCCCT 60.132 52.381 0.00 0.00 0.00 4.20
1938 2172 1.555533 CCCCACAAGAACTACTCCCTC 59.444 57.143 0.00 0.00 0.00 4.30
1939 2173 1.555533 CCCACAAGAACTACTCCCTCC 59.444 57.143 0.00 0.00 0.00 4.30
1940 2174 1.204941 CCACAAGAACTACTCCCTCCG 59.795 57.143 0.00 0.00 0.00 4.63
1941 2175 1.893801 CACAAGAACTACTCCCTCCGT 59.106 52.381 0.00 0.00 0.00 4.69
1942 2176 2.299297 CACAAGAACTACTCCCTCCGTT 59.701 50.000 0.00 0.00 0.00 4.44
1943 2177 2.561858 ACAAGAACTACTCCCTCCGTTC 59.438 50.000 0.00 0.00 36.81 3.95
1944 2178 1.461559 AGAACTACTCCCTCCGTTCG 58.538 55.000 0.00 0.00 40.36 3.95
1945 2179 0.455005 GAACTACTCCCTCCGTTCGG 59.545 60.000 4.74 4.74 0.00 4.30
1946 2180 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
1947 2181 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
1948 2182 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
1949 2183 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
1950 2184 0.981943 ACTCCCTCCGTTCGGAATTT 59.018 50.000 14.79 0.00 33.41 1.82
1951 2185 1.338769 ACTCCCTCCGTTCGGAATTTG 60.339 52.381 14.79 8.42 33.41 2.32
1952 2186 0.688487 TCCCTCCGTTCGGAATTTGT 59.312 50.000 14.79 0.00 33.41 2.83
1953 2187 1.084289 CCCTCCGTTCGGAATTTGTC 58.916 55.000 14.79 0.00 33.41 3.18
1954 2188 1.609580 CCCTCCGTTCGGAATTTGTCA 60.610 52.381 14.79 0.00 33.41 3.58
1955 2189 2.147958 CCTCCGTTCGGAATTTGTCAA 58.852 47.619 14.79 0.00 33.41 3.18
1956 2190 2.550606 CCTCCGTTCGGAATTTGTCAAA 59.449 45.455 14.79 0.00 33.41 2.69
1957 2191 3.003897 CCTCCGTTCGGAATTTGTCAAAA 59.996 43.478 14.79 0.00 33.41 2.44
1958 2192 4.498345 CCTCCGTTCGGAATTTGTCAAAAA 60.498 41.667 14.79 0.00 33.41 1.94
1984 2218 9.614792 AAAATGAATGTATCTACAACTACTCCC 57.385 33.333 0.00 0.00 39.99 4.30
1985 2219 8.554490 AATGAATGTATCTACAACTACTCCCT 57.446 34.615 0.00 0.00 39.99 4.20
1986 2220 7.584122 TGAATGTATCTACAACTACTCCCTC 57.416 40.000 0.00 0.00 39.99 4.30
1987 2221 6.550108 TGAATGTATCTACAACTACTCCCTCC 59.450 42.308 0.00 0.00 39.99 4.30
1988 2222 4.458397 TGTATCTACAACTACTCCCTCCG 58.542 47.826 0.00 0.00 32.40 4.63
1989 2223 3.666345 ATCTACAACTACTCCCTCCGT 57.334 47.619 0.00 0.00 0.00 4.69
1990 2224 4.785346 ATCTACAACTACTCCCTCCGTA 57.215 45.455 0.00 0.00 0.00 4.02
1991 2225 3.878778 TCTACAACTACTCCCTCCGTAC 58.121 50.000 0.00 0.00 0.00 3.67
1992 2226 1.457346 ACAACTACTCCCTCCGTACG 58.543 55.000 8.69 8.69 0.00 3.67
1993 2227 0.737219 CAACTACTCCCTCCGTACGG 59.263 60.000 28.66 28.66 0.00 4.02
1994 2228 0.620556 AACTACTCCCTCCGTACGGA 59.379 55.000 33.55 33.55 42.90 4.69
1995 2229 0.620556 ACTACTCCCTCCGTACGGAA 59.379 55.000 34.77 21.09 44.66 4.30
1996 2230 1.213926 ACTACTCCCTCCGTACGGAAT 59.786 52.381 34.77 20.47 44.66 3.01
1997 2231 2.305009 CTACTCCCTCCGTACGGAATT 58.695 52.381 34.77 18.48 44.66 2.17
1998 2232 2.442236 ACTCCCTCCGTACGGAATTA 57.558 50.000 34.77 21.70 44.66 1.40
1999 2233 2.027385 ACTCCCTCCGTACGGAATTAC 58.973 52.381 34.77 0.00 44.66 1.89
2000 2234 2.305009 CTCCCTCCGTACGGAATTACT 58.695 52.381 34.77 0.00 44.66 2.24
2001 2235 2.692041 CTCCCTCCGTACGGAATTACTT 59.308 50.000 34.77 0.00 44.66 2.24
2002 2236 3.099141 TCCCTCCGTACGGAATTACTTT 58.901 45.455 34.77 0.00 44.66 2.66
2003 2237 3.131046 TCCCTCCGTACGGAATTACTTTC 59.869 47.826 34.77 0.00 44.66 2.62
2004 2238 3.119029 CCCTCCGTACGGAATTACTTTCA 60.119 47.826 34.77 11.35 44.66 2.69
2005 2239 4.442472 CCCTCCGTACGGAATTACTTTCAT 60.442 45.833 34.77 0.00 44.66 2.57
2006 2240 5.221303 CCCTCCGTACGGAATTACTTTCATA 60.221 44.000 34.77 10.63 44.66 2.15
2007 2241 6.275335 CCTCCGTACGGAATTACTTTCATAA 58.725 40.000 34.77 10.19 44.66 1.90
2008 2242 6.757947 CCTCCGTACGGAATTACTTTCATAAA 59.242 38.462 34.77 9.54 44.66 1.40
2009 2243 7.278424 CCTCCGTACGGAATTACTTTCATAAAA 59.722 37.037 34.77 9.16 44.66 1.52
2010 2244 8.545229 TCCGTACGGAATTACTTTCATAAAAA 57.455 30.769 33.96 4.98 42.05 1.94
2011 2245 9.165035 TCCGTACGGAATTACTTTCATAAAAAT 57.835 29.630 33.96 0.00 42.05 1.82
2012 2246 9.217223 CCGTACGGAATTACTTTCATAAAAATG 57.783 33.333 30.64 0.00 35.94 2.32
2013 2247 9.976255 CGTACGGAATTACTTTCATAAAAATGA 57.024 29.630 7.57 0.00 35.94 2.57
2097 2331 8.798748 ATATTTACGAGTAATTCCGAACAGAG 57.201 34.615 0.00 0.00 0.00 3.35
2098 2332 5.885230 TTACGAGTAATTCCGAACAGAGA 57.115 39.130 0.00 0.00 0.00 3.10
2099 2333 4.778534 ACGAGTAATTCCGAACAGAGAA 57.221 40.909 0.00 0.00 0.00 2.87
2100 2334 5.130292 ACGAGTAATTCCGAACAGAGAAA 57.870 39.130 0.00 0.00 0.00 2.52
2101 2335 5.535333 ACGAGTAATTCCGAACAGAGAAAA 58.465 37.500 0.00 0.00 0.00 2.29
2102 2336 6.164176 ACGAGTAATTCCGAACAGAGAAAAT 58.836 36.000 0.00 0.00 0.00 1.82
2103 2337 7.318141 ACGAGTAATTCCGAACAGAGAAAATA 58.682 34.615 0.00 0.00 0.00 1.40
2104 2338 7.488471 ACGAGTAATTCCGAACAGAGAAAATAG 59.512 37.037 0.00 0.00 0.00 1.73
2105 2339 7.488471 CGAGTAATTCCGAACAGAGAAAATAGT 59.512 37.037 0.00 0.00 0.00 2.12
2106 2340 9.798994 GAGTAATTCCGAACAGAGAAAATAGTA 57.201 33.333 0.00 0.00 0.00 1.82
2136 2370 7.998753 ATTTACGAGTAATTCTAAACGGAGG 57.001 36.000 0.00 0.00 0.00 4.30
2137 2371 4.382345 ACGAGTAATTCTAAACGGAGGG 57.618 45.455 0.00 0.00 0.00 4.30
2138 2372 4.019174 ACGAGTAATTCTAAACGGAGGGA 58.981 43.478 0.00 0.00 0.00 4.20
2139 2373 4.097589 ACGAGTAATTCTAAACGGAGGGAG 59.902 45.833 0.00 0.00 0.00 4.30
2140 2374 4.097589 CGAGTAATTCTAAACGGAGGGAGT 59.902 45.833 0.00 0.00 0.00 3.85
2141 2375 5.297776 CGAGTAATTCTAAACGGAGGGAGTA 59.702 44.000 0.00 0.00 0.00 2.59
2142 2376 6.513066 CGAGTAATTCTAAACGGAGGGAGTAG 60.513 46.154 0.00 0.00 0.00 2.57
2143 2377 6.193504 AGTAATTCTAAACGGAGGGAGTAGT 58.806 40.000 0.00 0.00 0.00 2.73
2144 2378 7.349598 AGTAATTCTAAACGGAGGGAGTAGTA 58.650 38.462 0.00 0.00 0.00 1.82
2161 2395 6.862090 GGAGTAGTAATTATACTTGCACTCGG 59.138 42.308 9.55 0.00 41.76 4.63
2174 2408 7.391148 ACTTGCACTCGGAACATATATTTTT 57.609 32.000 0.00 0.00 0.00 1.94
2219 2453 3.170672 TGCCCTGACAGTGGTGCT 61.171 61.111 0.93 0.00 0.00 4.40
2257 2495 1.815003 CTGTGGAGTTCATTTCTGCCC 59.185 52.381 0.00 0.00 0.00 5.36
2265 2503 2.396590 TCATTTCTGCCCTTCCGTAC 57.603 50.000 0.00 0.00 0.00 3.67
2297 2535 0.106669 GCCATTTCTGTCCCCTACCC 60.107 60.000 0.00 0.00 0.00 3.69
2306 2544 1.618143 TCCCCTACCCCACACATGG 60.618 63.158 0.00 0.00 46.81 3.66
2347 2585 2.533916 TCCTGCTCTCAGATGAACAGT 58.466 47.619 0.00 0.00 42.95 3.55
2378 2616 8.725405 TGTAAACTCAGATGAACAGTAAAACA 57.275 30.769 0.00 0.00 0.00 2.83
2379 2617 9.337396 TGTAAACTCAGATGAACAGTAAAACAT 57.663 29.630 0.00 0.00 0.00 2.71
2441 2717 7.100829 CATTGTTGAATGTTTCACATGTCTG 57.899 36.000 0.00 0.00 37.97 3.51
2450 2726 5.042593 TGTTTCACATGTCTGCATTGTTTC 58.957 37.500 0.00 0.00 31.99 2.78
2451 2727 4.915158 TTCACATGTCTGCATTGTTTCA 57.085 36.364 0.00 0.00 31.99 2.69
2452 2728 4.492791 TCACATGTCTGCATTGTTTCAG 57.507 40.909 0.00 0.00 31.99 3.02
2454 2730 3.978855 CACATGTCTGCATTGTTTCAGTG 59.021 43.478 0.00 0.00 31.99 3.66
2457 2733 1.956477 GTCTGCATTGTTTCAGTGGGT 59.044 47.619 0.00 0.00 0.00 4.51
2461 2737 2.890311 TGCATTGTTTCAGTGGGTAAGG 59.110 45.455 0.00 0.00 0.00 2.69
2463 2739 2.668144 TTGTTTCAGTGGGTAAGGGG 57.332 50.000 0.00 0.00 0.00 4.79
2481 2757 3.456277 AGGGGAAATCGATGCTCTAAAGT 59.544 43.478 0.00 0.00 0.00 2.66
2482 2758 4.654262 AGGGGAAATCGATGCTCTAAAGTA 59.346 41.667 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.575162 ACTCCCTCAAAAACATGATGTTAC 57.425 37.500 11.70 0.00 40.14 2.50
2 3 9.479549 AATATACTCCCTCAAAAACATGATGTT 57.520 29.630 4.72 4.72 43.41 2.71
3 4 9.479549 AAATATACTCCCTCAAAAACATGATGT 57.520 29.630 0.00 0.00 0.00 3.06
28 29 6.484977 GGTAAGCAATCCAAACCATTGAAAAA 59.515 34.615 0.00 0.00 38.94 1.94
29 30 5.994668 GGTAAGCAATCCAAACCATTGAAAA 59.005 36.000 0.00 0.00 38.94 2.29
30 31 5.070981 TGGTAAGCAATCCAAACCATTGAAA 59.929 36.000 0.00 0.00 38.94 2.69
31 32 4.590647 TGGTAAGCAATCCAAACCATTGAA 59.409 37.500 0.00 0.00 38.94 2.69
32 33 4.021544 GTGGTAAGCAATCCAAACCATTGA 60.022 41.667 0.00 0.00 41.93 2.57
33 34 4.244862 GTGGTAAGCAATCCAAACCATTG 58.755 43.478 0.00 0.00 41.93 2.82
34 35 3.900601 TGTGGTAAGCAATCCAAACCATT 59.099 39.130 0.00 0.00 41.93 3.16
35 36 3.505386 TGTGGTAAGCAATCCAAACCAT 58.495 40.909 0.00 0.00 41.93 3.55
36 37 2.950781 TGTGGTAAGCAATCCAAACCA 58.049 42.857 0.00 0.00 37.88 3.67
37 38 3.258123 ACATGTGGTAAGCAATCCAAACC 59.742 43.478 0.00 0.00 35.38 3.27
38 39 4.236935 CACATGTGGTAAGCAATCCAAAC 58.763 43.478 18.51 0.00 35.38 2.93
39 40 3.894427 ACACATGTGGTAAGCAATCCAAA 59.106 39.130 28.64 0.00 35.38 3.28
40 41 3.495331 ACACATGTGGTAAGCAATCCAA 58.505 40.909 28.64 0.00 35.38 3.53
41 42 3.081061 GACACATGTGGTAAGCAATCCA 58.919 45.455 28.64 0.00 34.19 3.41
42 43 3.081061 TGACACATGTGGTAAGCAATCC 58.919 45.455 28.64 6.08 34.19 3.01
43 44 4.637534 AGATGACACATGTGGTAAGCAATC 59.362 41.667 28.64 17.96 34.19 2.67
44 45 4.397103 CAGATGACACATGTGGTAAGCAAT 59.603 41.667 28.64 11.33 34.19 3.56
45 46 3.752747 CAGATGACACATGTGGTAAGCAA 59.247 43.478 28.64 7.21 34.19 3.91
46 47 3.337358 CAGATGACACATGTGGTAAGCA 58.663 45.455 28.64 17.63 34.19 3.91
47 48 2.679837 CCAGATGACACATGTGGTAAGC 59.320 50.000 28.64 16.17 34.19 3.09
48 49 3.942829 ACCAGATGACACATGTGGTAAG 58.057 45.455 28.64 13.21 42.91 2.34
49 50 4.365514 AACCAGATGACACATGTGGTAA 57.634 40.909 28.64 14.42 43.78 2.85
50 51 4.365514 AAACCAGATGACACATGTGGTA 57.634 40.909 28.64 17.42 43.78 3.25
51 52 2.957402 AACCAGATGACACATGTGGT 57.043 45.000 28.64 22.01 46.10 4.16
52 53 4.037803 TCAAAAACCAGATGACACATGTGG 59.962 41.667 28.64 20.93 38.32 4.17
53 54 5.008911 TCTCAAAAACCAGATGACACATGTG 59.991 40.000 24.25 24.25 0.00 3.21
54 55 5.132502 TCTCAAAAACCAGATGACACATGT 58.867 37.500 0.00 0.00 0.00 3.21
55 56 5.471116 TCTCTCAAAAACCAGATGACACATG 59.529 40.000 0.00 0.00 0.00 3.21
56 57 5.624159 TCTCTCAAAAACCAGATGACACAT 58.376 37.500 0.00 0.00 0.00 3.21
57 58 5.034852 TCTCTCAAAAACCAGATGACACA 57.965 39.130 0.00 0.00 0.00 3.72
58 59 6.566197 ATTCTCTCAAAAACCAGATGACAC 57.434 37.500 0.00 0.00 0.00 3.67
59 60 7.884877 ACATATTCTCTCAAAAACCAGATGACA 59.115 33.333 0.00 0.00 0.00 3.58
60 61 8.273780 ACATATTCTCTCAAAAACCAGATGAC 57.726 34.615 0.00 0.00 0.00 3.06
61 62 8.733458 CAACATATTCTCTCAAAAACCAGATGA 58.267 33.333 0.00 0.00 0.00 2.92
62 63 8.733458 TCAACATATTCTCTCAAAAACCAGATG 58.267 33.333 0.00 0.00 0.00 2.90
63 64 8.868522 TCAACATATTCTCTCAAAAACCAGAT 57.131 30.769 0.00 0.00 0.00 2.90
64 65 8.733458 CATCAACATATTCTCTCAAAAACCAGA 58.267 33.333 0.00 0.00 0.00 3.86
65 66 8.733458 TCATCAACATATTCTCTCAAAAACCAG 58.267 33.333 0.00 0.00 0.00 4.00
66 67 8.514594 GTCATCAACATATTCTCTCAAAAACCA 58.485 33.333 0.00 0.00 0.00 3.67
67 68 8.514594 TGTCATCAACATATTCTCTCAAAAACC 58.485 33.333 0.00 0.00 31.20 3.27
83 84 7.939782 AGATGTGTTTTAACATGTCATCAACA 58.060 30.769 18.32 13.41 40.87 3.33
84 85 9.546909 CTAGATGTGTTTTAACATGTCATCAAC 57.453 33.333 18.32 11.54 40.87 3.18
85 86 9.500785 TCTAGATGTGTTTTAACATGTCATCAA 57.499 29.630 18.32 5.97 40.87 2.57
86 87 9.671279 ATCTAGATGTGTTTTAACATGTCATCA 57.329 29.630 18.32 6.68 40.87 3.07
87 88 9.926751 CATCTAGATGTGTTTTAACATGTCATC 57.073 33.333 22.42 11.54 40.87 2.92
88 89 9.671279 TCATCTAGATGTGTTTTAACATGTCAT 57.329 29.630 27.80 0.00 40.87 3.06
89 90 9.154847 CTCATCTAGATGTGTTTTAACATGTCA 57.845 33.333 27.80 6.12 40.87 3.58
90 91 9.371136 TCTCATCTAGATGTGTTTTAACATGTC 57.629 33.333 27.80 1.26 40.87 3.06
91 92 9.896645 ATCTCATCTAGATGTGTTTTAACATGT 57.103 29.630 27.80 0.00 43.62 3.21
105 106 7.230510 ACGAAGAAAGTAGCATCTCATCTAGAT 59.769 37.037 0.00 0.00 46.36 1.98
106 107 6.544197 ACGAAGAAAGTAGCATCTCATCTAGA 59.456 38.462 0.00 0.00 39.02 2.43
107 108 6.734137 ACGAAGAAAGTAGCATCTCATCTAG 58.266 40.000 0.00 0.00 0.00 2.43
108 109 6.238786 GGACGAAGAAAGTAGCATCTCATCTA 60.239 42.308 0.00 0.00 0.00 1.98
109 110 5.451242 GGACGAAGAAAGTAGCATCTCATCT 60.451 44.000 0.00 0.00 0.00 2.90
110 111 4.742659 GGACGAAGAAAGTAGCATCTCATC 59.257 45.833 0.00 0.00 0.00 2.92
111 112 4.404073 AGGACGAAGAAAGTAGCATCTCAT 59.596 41.667 0.00 0.00 0.00 2.90
112 113 3.764434 AGGACGAAGAAAGTAGCATCTCA 59.236 43.478 0.00 0.00 0.00 3.27
113 114 4.379339 AGGACGAAGAAAGTAGCATCTC 57.621 45.455 0.00 0.00 0.00 2.75
114 115 5.916661 TTAGGACGAAGAAAGTAGCATCT 57.083 39.130 0.00 0.00 0.00 2.90
115 116 6.963049 TTTTAGGACGAAGAAAGTAGCATC 57.037 37.500 0.00 0.00 0.00 3.91
116 117 9.099454 CTTATTTTAGGACGAAGAAAGTAGCAT 57.901 33.333 0.00 0.00 0.00 3.79
117 118 8.092687 ACTTATTTTAGGACGAAGAAAGTAGCA 58.907 33.333 0.00 0.00 0.00 3.49
118 119 8.381387 CACTTATTTTAGGACGAAGAAAGTAGC 58.619 37.037 0.00 0.00 0.00 3.58
119 120 9.420551 ACACTTATTTTAGGACGAAGAAAGTAG 57.579 33.333 0.00 0.00 0.00 2.57
120 121 9.415544 GACACTTATTTTAGGACGAAGAAAGTA 57.584 33.333 0.00 0.00 0.00 2.24
121 122 8.148999 AGACACTTATTTTAGGACGAAGAAAGT 58.851 33.333 0.00 0.00 0.00 2.66
122 123 8.535690 AGACACTTATTTTAGGACGAAGAAAG 57.464 34.615 0.00 0.00 0.00 2.62
123 124 8.145767 TGAGACACTTATTTTAGGACGAAGAAA 58.854 33.333 0.00 0.00 0.00 2.52
124 125 7.663827 TGAGACACTTATTTTAGGACGAAGAA 58.336 34.615 0.00 0.00 0.00 2.52
125 126 7.223260 TGAGACACTTATTTTAGGACGAAGA 57.777 36.000 0.00 0.00 0.00 2.87
126 127 7.599245 AGTTGAGACACTTATTTTAGGACGAAG 59.401 37.037 0.00 0.00 0.00 3.79
127 128 7.439381 AGTTGAGACACTTATTTTAGGACGAA 58.561 34.615 0.00 0.00 0.00 3.85
128 129 6.989659 AGTTGAGACACTTATTTTAGGACGA 58.010 36.000 0.00 0.00 0.00 4.20
129 130 7.653767 AAGTTGAGACACTTATTTTAGGACG 57.346 36.000 0.00 0.00 35.10 4.79
130 131 8.837389 ACAAAGTTGAGACACTTATTTTAGGAC 58.163 33.333 0.00 0.00 35.87 3.85
131 132 8.974060 ACAAAGTTGAGACACTTATTTTAGGA 57.026 30.769 0.00 0.00 35.87 2.94
139 140 9.880157 AAAGTTAGTACAAAGTTGAGACACTTA 57.120 29.630 0.00 0.00 35.87 2.24
140 141 8.788325 AAAGTTAGTACAAAGTTGAGACACTT 57.212 30.769 0.00 0.98 38.74 3.16
141 142 9.530633 CTAAAGTTAGTACAAAGTTGAGACACT 57.469 33.333 0.00 0.00 0.00 3.55
142 143 9.310716 ACTAAAGTTAGTACAAAGTTGAGACAC 57.689 33.333 1.81 0.00 41.92 3.67
166 167 8.989980 GTCTCAAGCTTAATACAACTTTGTACT 58.010 33.333 0.00 0.00 45.47 2.73
167 168 8.770828 TGTCTCAAGCTTAATACAACTTTGTAC 58.229 33.333 0.00 0.00 45.47 2.90
168 169 8.770828 GTGTCTCAAGCTTAATACAACTTTGTA 58.229 33.333 0.00 4.34 46.55 2.41
169 170 7.499232 AGTGTCTCAAGCTTAATACAACTTTGT 59.501 33.333 0.00 0.00 44.86 2.83
170 171 7.865707 AGTGTCTCAAGCTTAATACAACTTTG 58.134 34.615 0.00 0.00 0.00 2.77
171 172 8.451908 AAGTGTCTCAAGCTTAATACAACTTT 57.548 30.769 0.00 0.00 0.00 2.66
172 173 9.726438 ATAAGTGTCTCAAGCTTAATACAACTT 57.274 29.630 0.00 8.06 0.00 2.66
173 174 9.726438 AATAAGTGTCTCAAGCTTAATACAACT 57.274 29.630 0.00 0.00 0.00 3.16
179 180 9.507329 TCTCAAAATAAGTGTCTCAAGCTTAAT 57.493 29.630 0.00 0.00 0.00 1.40
180 181 8.774586 GTCTCAAAATAAGTGTCTCAAGCTTAA 58.225 33.333 0.00 0.00 0.00 1.85
181 182 7.116376 CGTCTCAAAATAAGTGTCTCAAGCTTA 59.884 37.037 0.00 0.00 0.00 3.09
182 183 6.073548 CGTCTCAAAATAAGTGTCTCAAGCTT 60.074 38.462 0.00 0.00 0.00 3.74
183 184 5.406780 CGTCTCAAAATAAGTGTCTCAAGCT 59.593 40.000 0.00 0.00 0.00 3.74
184 185 5.389935 CCGTCTCAAAATAAGTGTCTCAAGC 60.390 44.000 0.00 0.00 0.00 4.01
185 186 5.926542 TCCGTCTCAAAATAAGTGTCTCAAG 59.073 40.000 0.00 0.00 0.00 3.02
186 187 5.849510 TCCGTCTCAAAATAAGTGTCTCAA 58.150 37.500 0.00 0.00 0.00 3.02
187 188 5.462530 TCCGTCTCAAAATAAGTGTCTCA 57.537 39.130 0.00 0.00 0.00 3.27
188 189 4.865365 CCTCCGTCTCAAAATAAGTGTCTC 59.135 45.833 0.00 0.00 0.00 3.36
189 190 4.527038 TCCTCCGTCTCAAAATAAGTGTCT 59.473 41.667 0.00 0.00 0.00 3.41
190 191 4.817517 TCCTCCGTCTCAAAATAAGTGTC 58.182 43.478 0.00 0.00 0.00 3.67
191 192 4.884668 TCCTCCGTCTCAAAATAAGTGT 57.115 40.909 0.00 0.00 0.00 3.55
192 193 4.093556 GCTTCCTCCGTCTCAAAATAAGTG 59.906 45.833 0.00 0.00 0.00 3.16
193 194 4.254492 GCTTCCTCCGTCTCAAAATAAGT 58.746 43.478 0.00 0.00 0.00 2.24
194 195 4.253685 TGCTTCCTCCGTCTCAAAATAAG 58.746 43.478 0.00 0.00 0.00 1.73
195 196 4.280436 TGCTTCCTCCGTCTCAAAATAA 57.720 40.909 0.00 0.00 0.00 1.40
196 197 3.973206 TGCTTCCTCCGTCTCAAAATA 57.027 42.857 0.00 0.00 0.00 1.40
197 198 2.859165 TGCTTCCTCCGTCTCAAAAT 57.141 45.000 0.00 0.00 0.00 1.82
198 199 2.859165 ATGCTTCCTCCGTCTCAAAA 57.141 45.000 0.00 0.00 0.00 2.44
199 200 2.859165 AATGCTTCCTCCGTCTCAAA 57.141 45.000 0.00 0.00 0.00 2.69
200 201 2.859165 AAATGCTTCCTCCGTCTCAA 57.141 45.000 0.00 0.00 0.00 3.02
201 202 2.859165 AAAATGCTTCCTCCGTCTCA 57.141 45.000 0.00 0.00 0.00 3.27
202 203 3.596214 TGTAAAATGCTTCCTCCGTCTC 58.404 45.455 0.00 0.00 0.00 3.36
203 204 3.695830 TGTAAAATGCTTCCTCCGTCT 57.304 42.857 0.00 0.00 0.00 4.18
204 205 4.192317 AGATGTAAAATGCTTCCTCCGTC 58.808 43.478 0.00 0.00 0.00 4.79
205 206 4.222124 AGATGTAAAATGCTTCCTCCGT 57.778 40.909 0.00 0.00 0.00 4.69
206 207 5.463724 GTCTAGATGTAAAATGCTTCCTCCG 59.536 44.000 0.00 0.00 0.00 4.63
207 208 6.349300 TGTCTAGATGTAAAATGCTTCCTCC 58.651 40.000 0.00 0.00 0.00 4.30
208 209 7.712639 TCATGTCTAGATGTAAAATGCTTCCTC 59.287 37.037 0.00 0.00 0.00 3.71
209 210 7.568349 TCATGTCTAGATGTAAAATGCTTCCT 58.432 34.615 0.00 0.00 0.00 3.36
210 211 7.792374 TCATGTCTAGATGTAAAATGCTTCC 57.208 36.000 0.00 0.00 0.00 3.46
221 222 9.201989 TGAGTTACCTATTTCATGTCTAGATGT 57.798 33.333 0.00 0.00 0.00 3.06
222 223 9.469807 GTGAGTTACCTATTTCATGTCTAGATG 57.530 37.037 0.00 0.00 0.00 2.90
223 224 9.201989 TGTGAGTTACCTATTTCATGTCTAGAT 57.798 33.333 0.00 0.00 0.00 1.98
224 225 8.589701 TGTGAGTTACCTATTTCATGTCTAGA 57.410 34.615 0.00 0.00 0.00 2.43
225 226 9.823647 AATGTGAGTTACCTATTTCATGTCTAG 57.176 33.333 0.00 0.00 0.00 2.43
236 237 9.256228 TGAGAGACTTAAATGTGAGTTACCTAT 57.744 33.333 0.00 0.00 0.00 2.57
237 238 8.645814 TGAGAGACTTAAATGTGAGTTACCTA 57.354 34.615 0.00 0.00 0.00 3.08
238 239 7.540474 TGAGAGACTTAAATGTGAGTTACCT 57.460 36.000 0.00 0.00 0.00 3.08
239 240 8.035394 TGATGAGAGACTTAAATGTGAGTTACC 58.965 37.037 0.00 0.00 0.00 2.85
240 241 8.865001 GTGATGAGAGACTTAAATGTGAGTTAC 58.135 37.037 0.00 0.00 0.00 2.50
241 242 8.585018 TGTGATGAGAGACTTAAATGTGAGTTA 58.415 33.333 0.00 0.00 0.00 2.24
242 243 7.386299 GTGTGATGAGAGACTTAAATGTGAGTT 59.614 37.037 0.00 0.00 0.00 3.01
243 244 6.870965 GTGTGATGAGAGACTTAAATGTGAGT 59.129 38.462 0.00 0.00 0.00 3.41
244 245 6.034363 CGTGTGATGAGAGACTTAAATGTGAG 59.966 42.308 0.00 0.00 0.00 3.51
245 246 5.863935 CGTGTGATGAGAGACTTAAATGTGA 59.136 40.000 0.00 0.00 0.00 3.58
246 247 5.863935 TCGTGTGATGAGAGACTTAAATGTG 59.136 40.000 0.00 0.00 0.00 3.21
247 248 6.025749 TCGTGTGATGAGAGACTTAAATGT 57.974 37.500 0.00 0.00 0.00 2.71
248 249 6.753744 TGATCGTGTGATGAGAGACTTAAATG 59.246 38.462 0.00 0.00 34.09 2.32
249 250 6.867550 TGATCGTGTGATGAGAGACTTAAAT 58.132 36.000 0.00 0.00 34.09 1.40
250 251 6.267496 TGATCGTGTGATGAGAGACTTAAA 57.733 37.500 0.00 0.00 34.09 1.52
251 252 5.897377 TGATCGTGTGATGAGAGACTTAA 57.103 39.130 0.00 0.00 34.09 1.85
252 253 5.648092 TCTTGATCGTGTGATGAGAGACTTA 59.352 40.000 0.00 0.00 34.09 2.24
253 254 4.460731 TCTTGATCGTGTGATGAGAGACTT 59.539 41.667 0.00 0.00 34.09 3.01
254 255 4.013050 TCTTGATCGTGTGATGAGAGACT 58.987 43.478 0.00 0.00 34.09 3.24
255 256 4.101942 GTCTTGATCGTGTGATGAGAGAC 58.898 47.826 0.00 0.00 34.09 3.36
256 257 4.013050 AGTCTTGATCGTGTGATGAGAGA 58.987 43.478 0.00 0.00 34.09 3.10
257 258 4.104066 CAGTCTTGATCGTGTGATGAGAG 58.896 47.826 0.00 0.00 34.09 3.20
258 259 3.507622 ACAGTCTTGATCGTGTGATGAGA 59.492 43.478 0.00 0.00 34.09 3.27
259 260 3.842820 ACAGTCTTGATCGTGTGATGAG 58.157 45.455 0.00 0.00 34.09 2.90
260 261 3.942130 ACAGTCTTGATCGTGTGATGA 57.058 42.857 0.00 0.00 34.09 2.92
261 262 6.653273 AATTACAGTCTTGATCGTGTGATG 57.347 37.500 0.00 0.00 34.09 3.07
262 263 7.411912 CGAAAATTACAGTCTTGATCGTGTGAT 60.412 37.037 0.00 0.00 37.60 3.06
263 264 6.128929 CGAAAATTACAGTCTTGATCGTGTGA 60.129 38.462 0.00 0.00 0.00 3.58
264 265 6.009474 CGAAAATTACAGTCTTGATCGTGTG 58.991 40.000 0.00 0.00 0.00 3.82
265 266 5.694910 ACGAAAATTACAGTCTTGATCGTGT 59.305 36.000 0.00 0.00 39.26 4.49
266 267 6.153212 ACGAAAATTACAGTCTTGATCGTG 57.847 37.500 0.00 0.00 39.26 4.35
267 268 5.389516 GCACGAAAATTACAGTCTTGATCGT 60.390 40.000 0.00 0.00 41.13 3.73
268 269 5.015733 GCACGAAAATTACAGTCTTGATCG 58.984 41.667 0.00 0.00 0.00 3.69
269 270 5.927030 TGCACGAAAATTACAGTCTTGATC 58.073 37.500 0.00 0.00 0.00 2.92
270 271 5.940192 TGCACGAAAATTACAGTCTTGAT 57.060 34.783 0.00 0.00 0.00 2.57
271 272 5.743026 TTGCACGAAAATTACAGTCTTGA 57.257 34.783 0.00 0.00 0.00 3.02
272 273 6.991485 ATTTGCACGAAAATTACAGTCTTG 57.009 33.333 0.00 0.00 0.00 3.02
273 274 8.327429 CAAAATTTGCACGAAAATTACAGTCTT 58.673 29.630 0.00 0.00 38.49 3.01
274 275 7.491048 ACAAAATTTGCACGAAAATTACAGTCT 59.509 29.630 5.52 0.00 38.49 3.24
275 276 7.617557 ACAAAATTTGCACGAAAATTACAGTC 58.382 30.769 5.52 0.00 38.49 3.51
276 277 7.532682 ACAAAATTTGCACGAAAATTACAGT 57.467 28.000 5.52 0.00 38.49 3.55
277 278 9.566624 CTAACAAAATTTGCACGAAAATTACAG 57.433 29.630 5.52 0.00 38.49 2.74
278 279 9.302345 TCTAACAAAATTTGCACGAAAATTACA 57.698 25.926 5.52 0.00 38.49 2.41
281 282 9.862585 GATTCTAACAAAATTTGCACGAAAATT 57.137 25.926 5.52 0.00 40.60 1.82
282 283 8.495148 GGATTCTAACAAAATTTGCACGAAAAT 58.505 29.630 5.52 0.00 0.00 1.82
283 284 7.042389 GGGATTCTAACAAAATTTGCACGAAAA 60.042 33.333 5.52 0.00 0.00 2.29
284 285 6.422400 GGGATTCTAACAAAATTTGCACGAAA 59.578 34.615 5.52 0.00 0.00 3.46
285 286 5.923684 GGGATTCTAACAAAATTTGCACGAA 59.076 36.000 5.52 6.19 0.00 3.85
286 287 5.465935 GGGATTCTAACAAAATTTGCACGA 58.534 37.500 5.52 0.00 0.00 4.35
287 288 4.323336 CGGGATTCTAACAAAATTTGCACG 59.677 41.667 5.52 0.00 0.00 5.34
288 289 5.465935 TCGGGATTCTAACAAAATTTGCAC 58.534 37.500 5.52 0.00 0.00 4.57
289 290 5.713792 TCGGGATTCTAACAAAATTTGCA 57.286 34.783 5.52 0.00 0.00 4.08
290 291 6.128661 GGTTTCGGGATTCTAACAAAATTTGC 60.129 38.462 5.52 0.00 0.00 3.68
291 292 6.088883 CGGTTTCGGGATTCTAACAAAATTTG 59.911 38.462 3.89 3.89 0.00 2.32
292 293 6.153756 CGGTTTCGGGATTCTAACAAAATTT 58.846 36.000 0.00 0.00 0.00 1.82
293 294 5.705902 CGGTTTCGGGATTCTAACAAAATT 58.294 37.500 0.00 0.00 0.00 1.82
294 295 4.380128 GCGGTTTCGGGATTCTAACAAAAT 60.380 41.667 0.00 0.00 36.79 1.82
295 296 3.058085 GCGGTTTCGGGATTCTAACAAAA 60.058 43.478 0.00 0.00 36.79 2.44
296 297 2.485038 GCGGTTTCGGGATTCTAACAAA 59.515 45.455 0.00 0.00 36.79 2.83
297 298 2.078392 GCGGTTTCGGGATTCTAACAA 58.922 47.619 0.00 0.00 36.79 2.83
298 299 1.002201 TGCGGTTTCGGGATTCTAACA 59.998 47.619 0.00 0.00 36.79 2.41
299 300 1.664151 CTGCGGTTTCGGGATTCTAAC 59.336 52.381 0.00 0.00 36.79 2.34
300 301 2.010043 GCTGCGGTTTCGGGATTCTAA 61.010 52.381 0.00 0.00 36.79 2.10
301 302 0.461339 GCTGCGGTTTCGGGATTCTA 60.461 55.000 0.00 0.00 36.79 2.10
302 303 1.745489 GCTGCGGTTTCGGGATTCT 60.745 57.895 0.00 0.00 36.79 2.40
303 304 2.761195 GGCTGCGGTTTCGGGATTC 61.761 63.158 0.00 0.00 36.79 2.52
304 305 2.750237 GGCTGCGGTTTCGGGATT 60.750 61.111 0.00 0.00 36.79 3.01
305 306 3.561120 TTGGCTGCGGTTTCGGGAT 62.561 57.895 0.00 0.00 36.79 3.85
306 307 4.257654 TTGGCTGCGGTTTCGGGA 62.258 61.111 0.00 0.00 36.79 5.14
307 308 4.038080 GTTGGCTGCGGTTTCGGG 62.038 66.667 0.00 0.00 36.79 5.14
308 309 4.383602 CGTTGGCTGCGGTTTCGG 62.384 66.667 0.00 0.00 36.79 4.30
317 318 2.563086 GAAATCGTCCGCGTTGGCTG 62.563 60.000 4.92 0.00 39.49 4.85
318 319 2.358247 AAATCGTCCGCGTTGGCT 60.358 55.556 4.92 0.00 39.49 4.75
319 320 2.097728 GAAATCGTCCGCGTTGGC 59.902 61.111 4.92 0.00 39.49 4.52
320 321 2.394136 CGAAATCGTCCGCGTTGG 59.606 61.111 4.92 0.00 39.49 3.77
321 322 2.394136 CCGAAATCGTCCGCGTTG 59.606 61.111 4.92 0.00 39.49 4.10
322 323 2.768503 TTCCCGAAATCGTCCGCGTT 62.769 55.000 4.92 0.00 39.49 4.84
323 324 2.768503 TTTCCCGAAATCGTCCGCGT 62.769 55.000 4.92 0.00 39.49 6.01
324 325 2.020836 CTTTCCCGAAATCGTCCGCG 62.021 60.000 0.00 0.00 37.74 6.46
325 326 1.713830 CTTTCCCGAAATCGTCCGC 59.286 57.895 1.79 0.00 37.74 5.54
326 327 0.739813 AGCTTTCCCGAAATCGTCCG 60.740 55.000 1.79 0.00 37.74 4.79
327 328 0.727398 CAGCTTTCCCGAAATCGTCC 59.273 55.000 1.79 0.00 37.74 4.79
328 329 0.727398 CCAGCTTTCCCGAAATCGTC 59.273 55.000 1.79 0.00 37.74 4.20
329 330 0.676782 CCCAGCTTTCCCGAAATCGT 60.677 55.000 1.79 0.00 37.74 3.73
330 331 1.993369 GCCCAGCTTTCCCGAAATCG 61.993 60.000 0.00 0.00 39.44 3.34
331 332 0.681243 AGCCCAGCTTTCCCGAAATC 60.681 55.000 0.00 0.00 33.89 2.17
332 333 0.681243 GAGCCCAGCTTTCCCGAAAT 60.681 55.000 0.00 0.00 39.88 2.17
333 334 1.303317 GAGCCCAGCTTTCCCGAAA 60.303 57.895 0.00 0.00 39.88 3.46
334 335 2.351276 GAGCCCAGCTTTCCCGAA 59.649 61.111 0.00 0.00 39.88 4.30
335 336 4.082523 CGAGCCCAGCTTTCCCGA 62.083 66.667 0.00 0.00 39.88 5.14
336 337 4.082523 TCGAGCCCAGCTTTCCCG 62.083 66.667 0.00 0.00 39.88 5.14
337 338 2.124942 CTCGAGCCCAGCTTTCCC 60.125 66.667 0.00 0.00 39.88 3.97
338 339 2.821810 GCTCGAGCCCAGCTTTCC 60.822 66.667 27.22 0.00 39.88 3.13
339 340 3.191539 CGCTCGAGCCCAGCTTTC 61.192 66.667 30.66 1.17 39.88 2.62
355 356 4.005472 GGATGCAGCGATTCGGCG 62.005 66.667 8.34 0.00 38.80 6.46
356 357 2.896854 TGGATGCAGCGATTCGGC 60.897 61.111 8.34 4.31 36.38 5.54
357 358 1.091771 AAGTGGATGCAGCGATTCGG 61.092 55.000 8.34 0.00 0.00 4.30
358 359 0.729116 AAAGTGGATGCAGCGATTCG 59.271 50.000 0.62 0.62 0.00 3.34
359 360 2.421424 AGAAAAGTGGATGCAGCGATTC 59.579 45.455 0.00 0.00 0.00 2.52
360 361 2.421424 GAGAAAAGTGGATGCAGCGATT 59.579 45.455 0.00 0.00 0.00 3.34
361 362 2.012673 GAGAAAAGTGGATGCAGCGAT 58.987 47.619 0.00 0.00 0.00 4.58
362 363 1.002430 AGAGAAAAGTGGATGCAGCGA 59.998 47.619 0.00 0.00 0.00 4.93
363 364 1.446907 AGAGAAAAGTGGATGCAGCG 58.553 50.000 0.00 0.00 0.00 5.18
364 365 4.006319 AGTTAGAGAAAAGTGGATGCAGC 58.994 43.478 0.00 0.00 0.00 5.25
365 366 7.389053 ACTTAAGTTAGAGAAAAGTGGATGCAG 59.611 37.037 1.12 0.00 0.00 4.41
366 367 7.224297 ACTTAAGTTAGAGAAAAGTGGATGCA 58.776 34.615 1.12 0.00 0.00 3.96
367 368 7.674471 ACTTAAGTTAGAGAAAAGTGGATGC 57.326 36.000 1.12 0.00 0.00 3.91
382 383 5.625197 CGCCTGTAAGCCCTAACTTAAGTTA 60.625 44.000 23.31 23.31 39.31 2.24
383 384 4.586884 GCCTGTAAGCCCTAACTTAAGTT 58.413 43.478 23.58 23.58 41.73 2.66
384 385 3.369157 CGCCTGTAAGCCCTAACTTAAGT 60.369 47.826 1.12 1.12 34.04 2.24
385 386 3.195661 CGCCTGTAAGCCCTAACTTAAG 58.804 50.000 0.00 0.00 34.04 1.85
386 387 2.568509 ACGCCTGTAAGCCCTAACTTAA 59.431 45.455 0.00 0.00 34.04 1.85
387 388 2.181975 ACGCCTGTAAGCCCTAACTTA 58.818 47.619 0.00 0.00 0.00 2.24
388 389 0.981943 ACGCCTGTAAGCCCTAACTT 59.018 50.000 0.00 0.00 0.00 2.66
389 390 1.856629 TACGCCTGTAAGCCCTAACT 58.143 50.000 0.00 0.00 0.00 2.24
390 391 2.101917 TGATACGCCTGTAAGCCCTAAC 59.898 50.000 0.00 0.00 33.44 2.34
391 392 2.390696 TGATACGCCTGTAAGCCCTAA 58.609 47.619 0.00 0.00 33.44 2.69
392 393 2.076207 TGATACGCCTGTAAGCCCTA 57.924 50.000 0.00 0.00 33.44 3.53
393 394 1.134491 GTTGATACGCCTGTAAGCCCT 60.134 52.381 0.00 0.00 33.44 5.19
394 395 1.134491 AGTTGATACGCCTGTAAGCCC 60.134 52.381 0.00 0.00 33.44 5.19
395 396 2.311124 AGTTGATACGCCTGTAAGCC 57.689 50.000 0.00 0.00 33.44 4.35
396 397 4.178540 TGTAAGTTGATACGCCTGTAAGC 58.821 43.478 0.00 0.00 33.44 3.09
397 398 5.867716 ACTTGTAAGTTGATACGCCTGTAAG 59.132 40.000 0.00 0.00 35.21 2.34
398 399 5.786311 ACTTGTAAGTTGATACGCCTGTAA 58.214 37.500 0.00 0.00 35.21 2.41
399 400 5.395682 ACTTGTAAGTTGATACGCCTGTA 57.604 39.130 0.00 0.00 35.21 2.74
400 401 4.267349 ACTTGTAAGTTGATACGCCTGT 57.733 40.909 0.00 0.00 35.21 4.00
424 425 9.898152 TCTTTTTCCTTTTATTTTTGATGTGGT 57.102 25.926 0.00 0.00 0.00 4.16
439 440 9.865321 GTAACCTTGTAAGTTTCTTTTTCCTTT 57.135 29.630 0.00 0.00 0.00 3.11
440 441 8.472413 GGTAACCTTGTAAGTTTCTTTTTCCTT 58.528 33.333 0.00 0.00 0.00 3.36
441 442 7.616542 TGGTAACCTTGTAAGTTTCTTTTTCCT 59.383 33.333 0.00 0.00 0.00 3.36
442 443 7.774134 TGGTAACCTTGTAAGTTTCTTTTTCC 58.226 34.615 0.00 0.00 0.00 3.13
443 444 9.811995 ATTGGTAACCTTGTAAGTTTCTTTTTC 57.188 29.630 0.00 0.00 0.00 2.29
445 446 9.594478 CAATTGGTAACCTTGTAAGTTTCTTTT 57.406 29.630 0.00 0.00 0.00 2.27
446 447 8.973182 TCAATTGGTAACCTTGTAAGTTTCTTT 58.027 29.630 5.42 0.00 31.95 2.52
447 448 8.528044 TCAATTGGTAACCTTGTAAGTTTCTT 57.472 30.769 5.42 0.00 31.95 2.52
448 449 8.528044 TTCAATTGGTAACCTTGTAAGTTTCT 57.472 30.769 5.42 0.00 31.95 2.52
449 450 7.381408 GCTTCAATTGGTAACCTTGTAAGTTTC 59.619 37.037 5.42 0.00 31.95 2.78
450 451 7.207383 GCTTCAATTGGTAACCTTGTAAGTTT 58.793 34.615 5.42 0.00 31.95 2.66
451 452 6.239204 GGCTTCAATTGGTAACCTTGTAAGTT 60.239 38.462 5.42 0.00 31.95 2.66
452 453 5.243060 GGCTTCAATTGGTAACCTTGTAAGT 59.757 40.000 5.42 0.00 31.95 2.24
453 454 5.476945 AGGCTTCAATTGGTAACCTTGTAAG 59.523 40.000 5.42 0.00 31.95 2.34
454 455 5.390387 AGGCTTCAATTGGTAACCTTGTAA 58.610 37.500 5.42 0.00 31.95 2.41
455 456 4.993028 AGGCTTCAATTGGTAACCTTGTA 58.007 39.130 5.42 0.00 31.95 2.41
456 457 3.844640 AGGCTTCAATTGGTAACCTTGT 58.155 40.909 5.42 0.00 31.95 3.16
457 458 5.975693 TTAGGCTTCAATTGGTAACCTTG 57.024 39.130 5.42 0.00 0.00 3.61
458 459 6.987403 TTTTAGGCTTCAATTGGTAACCTT 57.013 33.333 5.42 0.00 0.00 3.50
459 460 6.780522 TCTTTTTAGGCTTCAATTGGTAACCT 59.219 34.615 5.42 10.01 0.00 3.50
460 461 6.988522 TCTTTTTAGGCTTCAATTGGTAACC 58.011 36.000 5.42 2.79 0.00 2.85
461 462 7.923878 TGTTCTTTTTAGGCTTCAATTGGTAAC 59.076 33.333 5.42 0.00 0.00 2.50
462 463 8.012957 TGTTCTTTTTAGGCTTCAATTGGTAA 57.987 30.769 5.42 0.00 0.00 2.85
463 464 7.589958 TGTTCTTTTTAGGCTTCAATTGGTA 57.410 32.000 5.42 0.00 0.00 3.25
464 465 6.478512 TGTTCTTTTTAGGCTTCAATTGGT 57.521 33.333 5.42 0.00 0.00 3.67
465 466 7.967890 ATTGTTCTTTTTAGGCTTCAATTGG 57.032 32.000 5.42 0.00 0.00 3.16
469 470 8.455682 CGGTATATTGTTCTTTTTAGGCTTCAA 58.544 33.333 0.00 0.00 0.00 2.69
470 471 7.608761 ACGGTATATTGTTCTTTTTAGGCTTCA 59.391 33.333 0.00 0.00 0.00 3.02
471 472 7.908601 CACGGTATATTGTTCTTTTTAGGCTTC 59.091 37.037 0.00 0.00 0.00 3.86
472 473 7.148137 CCACGGTATATTGTTCTTTTTAGGCTT 60.148 37.037 0.00 0.00 0.00 4.35
473 474 6.317893 CCACGGTATATTGTTCTTTTTAGGCT 59.682 38.462 0.00 0.00 0.00 4.58
474 475 6.492254 CCACGGTATATTGTTCTTTTTAGGC 58.508 40.000 0.00 0.00 0.00 3.93
475 476 6.094325 TGCCACGGTATATTGTTCTTTTTAGG 59.906 38.462 0.00 0.00 0.00 2.69
476 477 6.964934 GTGCCACGGTATATTGTTCTTTTTAG 59.035 38.462 0.00 0.00 0.00 1.85
477 478 6.655848 AGTGCCACGGTATATTGTTCTTTTTA 59.344 34.615 0.00 0.00 0.00 1.52
483 484 2.538449 CGAGTGCCACGGTATATTGTTC 59.462 50.000 0.00 0.00 0.00 3.18
563 565 8.301002 TGCCGCTTTATAAATTTTCACTTAAGT 58.699 29.630 1.12 1.12 0.00 2.24
565 567 9.296400 GATGCCGCTTTATAAATTTTCACTTAA 57.704 29.630 0.00 0.00 0.00 1.85
618 627 1.745115 CATCGATGGTGTGCCCGTT 60.745 57.895 17.96 0.00 35.15 4.44
630 639 1.403814 ACATGACGTCCTCCATCGAT 58.596 50.000 14.12 0.00 0.00 3.59
694 704 0.036765 TCGCGAATGCAGTACCCTTT 60.037 50.000 6.20 0.00 42.97 3.11
712 722 0.726256 GTCCTCTCGTCCTACGTGTC 59.274 60.000 0.00 0.00 43.14 3.67
763 773 3.118629 GGATAGCGATGCCTCAATCCATA 60.119 47.826 8.99 0.00 0.00 2.74
765 775 1.002430 GGATAGCGATGCCTCAATCCA 59.998 52.381 8.99 0.00 0.00 3.41
768 778 2.708051 CATGGATAGCGATGCCTCAAT 58.292 47.619 0.00 0.00 0.00 2.57
805 815 2.577059 CATACCTCGGGCACGTGT 59.423 61.111 18.38 10.07 41.85 4.49
815 825 1.153168 ACATGTGGCCGCATACCTC 60.153 57.895 30.63 0.00 0.00 3.85
869 879 3.871594 GGTATATAAGATGCGATGTGGGC 59.128 47.826 0.00 0.00 0.00 5.36
976 986 1.347378 TGTAGGCAGATGCACACTTGA 59.653 47.619 7.19 0.00 44.36 3.02
991 1001 1.147824 CTCCAGCCATGCCTGTAGG 59.852 63.158 2.61 0.00 38.53 3.18
992 1002 0.106335 CTCTCCAGCCATGCCTGTAG 59.894 60.000 2.61 0.00 0.00 2.74
996 1006 2.553765 CTTGCTCTCCAGCCATGCCT 62.554 60.000 0.00 0.00 46.26 4.75
1120 1130 4.382320 GGTCGCCGGCTGGTTGTA 62.382 66.667 26.68 0.00 37.67 2.41
1135 1145 4.052229 CTTCGCGAGGGTGACGGT 62.052 66.667 10.87 0.00 31.07 4.83
1176 1186 3.842923 AGGAGCAGCATCGACCCG 61.843 66.667 0.00 0.00 0.00 5.28
1287 1297 2.125912 GTCAGCATCGTGACGGCT 60.126 61.111 4.70 3.70 37.69 5.52
1350 1360 2.125713 TACATCCACGCCAGCACG 60.126 61.111 0.00 0.00 39.50 5.34
1425 1435 2.811317 GAGTCCAGCTTCGCACCG 60.811 66.667 0.00 0.00 0.00 4.94
1428 1438 1.004560 CTTGGAGTCCAGCTTCGCA 60.005 57.895 12.67 0.00 33.81 5.10
1506 1516 2.610438 AGGAGGGCAAATGACAACAT 57.390 45.000 0.00 0.00 38.50 2.71
1510 1520 1.746861 CGCATAGGAGGGCAAATGACA 60.747 52.381 0.00 0.00 0.00 3.58
1542 1562 0.678684 TAGAGGCGTCGATCCACACA 60.679 55.000 0.00 0.00 0.00 3.72
1543 1563 0.669077 ATAGAGGCGTCGATCCACAC 59.331 55.000 0.00 1.53 0.00 3.82
1598 1618 6.765036 AGATATGCAGCTTATTATTCATCGGG 59.235 38.462 2.46 0.00 0.00 5.14
1670 1698 1.414919 AGTAGACGGCACAAGAACCAA 59.585 47.619 0.00 0.00 0.00 3.67
1672 1700 1.798813 CAAGTAGACGGCACAAGAACC 59.201 52.381 0.00 0.00 0.00 3.62
1677 1705 2.314647 GCGCAAGTAGACGGCACAA 61.315 57.895 0.30 0.00 41.68 3.33
1712 1749 4.263068 GGACTCCAAATCAGAAGTCCTTGA 60.263 45.833 12.08 0.00 41.67 3.02
1728 1767 1.536940 TATGAACGACGTGGACTCCA 58.463 50.000 3.97 0.00 0.00 3.86
1743 1782 5.079689 TCGTGTTCAAGGCAGTAATATGA 57.920 39.130 0.00 0.00 0.00 2.15
1758 1797 3.053455 GGAATCGAGGATCATCGTGTTC 58.947 50.000 26.87 26.71 43.20 3.18
1759 1798 2.695666 AGGAATCGAGGATCATCGTGTT 59.304 45.455 26.87 21.83 43.20 3.32
1760 1799 2.311463 AGGAATCGAGGATCATCGTGT 58.689 47.619 26.87 16.87 43.20 4.49
1761 1800 3.005261 AGAAGGAATCGAGGATCATCGTG 59.995 47.826 26.87 2.82 43.20 4.35
1762 1801 3.226777 AGAAGGAATCGAGGATCATCGT 58.773 45.455 26.87 11.01 43.20 3.73
1763 1802 3.932545 AGAAGGAATCGAGGATCATCG 57.067 47.619 22.99 22.99 44.07 3.84
1764 1803 5.105392 AGCATAGAAGGAATCGAGGATCATC 60.105 44.000 0.00 0.00 33.17 2.92
1765 1804 4.776837 AGCATAGAAGGAATCGAGGATCAT 59.223 41.667 0.00 0.00 33.17 2.45
1766 1805 4.021632 CAGCATAGAAGGAATCGAGGATCA 60.022 45.833 0.00 0.00 33.17 2.92
1791 2024 3.142174 GAGGGATTTAGGAATTGGAGCG 58.858 50.000 0.00 0.00 0.00 5.03
1796 2029 7.115414 AGAACAGAAGAGGGATTTAGGAATTG 58.885 38.462 0.00 0.00 0.00 2.32
1802 2035 9.508642 AGTTTTAAGAACAGAAGAGGGATTTAG 57.491 33.333 4.21 0.00 0.00 1.85
1813 2046 7.485595 GGCGTTAAAACAGTTTTAAGAACAGAA 59.514 33.333 25.28 6.81 43.49 3.02
1823 2056 3.056035 TGTTGGGGCGTTAAAACAGTTTT 60.056 39.130 15.58 15.58 36.67 2.43
1840 2073 3.058450 TGCGATTCAAGCAAATTGTTGG 58.942 40.909 0.00 0.00 42.18 3.77
1841 2074 3.120923 GGTGCGATTCAAGCAAATTGTTG 60.121 43.478 0.00 0.00 46.97 3.33
1849 2082 1.603456 TTTCAGGTGCGATTCAAGCA 58.397 45.000 0.00 0.00 42.99 3.91
1856 2089 4.924305 AATATGCAATTTCAGGTGCGAT 57.076 36.364 0.00 0.00 43.93 4.58
1881 2115 1.352156 GCGGAACTGAAGGTAGCACG 61.352 60.000 0.00 0.00 0.00 5.34
1882 2116 1.019805 GGCGGAACTGAAGGTAGCAC 61.020 60.000 0.00 0.00 0.00 4.40
1932 2166 1.338769 ACAAATTCCGAACGGAGGGAG 60.339 52.381 15.34 10.18 46.06 4.30
1933 2167 0.688487 ACAAATTCCGAACGGAGGGA 59.312 50.000 15.34 2.49 46.06 4.20
1934 2168 1.084289 GACAAATTCCGAACGGAGGG 58.916 55.000 15.34 9.28 46.06 4.30
1935 2169 1.803334 TGACAAATTCCGAACGGAGG 58.197 50.000 15.34 9.59 46.06 4.30
1936 2170 3.889196 TTTGACAAATTCCGAACGGAG 57.111 42.857 15.34 7.27 46.06 4.63
1937 2171 4.634184 TTTTTGACAAATTCCGAACGGA 57.366 36.364 12.04 12.04 43.52 4.69
1958 2192 9.614792 GGGAGTAGTTGTAGATACATTCATTTT 57.385 33.333 0.00 0.00 35.89 1.82
1959 2193 8.993424 AGGGAGTAGTTGTAGATACATTCATTT 58.007 33.333 0.00 0.00 35.89 2.32
1960 2194 8.554490 AGGGAGTAGTTGTAGATACATTCATT 57.446 34.615 0.00 0.00 35.89 2.57
1961 2195 7.233757 GGAGGGAGTAGTTGTAGATACATTCAT 59.766 40.741 0.00 0.00 35.89 2.57
1962 2196 6.550108 GGAGGGAGTAGTTGTAGATACATTCA 59.450 42.308 0.00 0.00 35.89 2.57
1963 2197 6.294065 CGGAGGGAGTAGTTGTAGATACATTC 60.294 46.154 0.00 0.00 35.89 2.67
1964 2198 5.535406 CGGAGGGAGTAGTTGTAGATACATT 59.465 44.000 0.00 0.00 35.89 2.71
1965 2199 5.071370 CGGAGGGAGTAGTTGTAGATACAT 58.929 45.833 0.00 0.00 35.89 2.29
1966 2200 4.080129 ACGGAGGGAGTAGTTGTAGATACA 60.080 45.833 0.00 0.00 0.00 2.29
1967 2201 4.459330 ACGGAGGGAGTAGTTGTAGATAC 58.541 47.826 0.00 0.00 0.00 2.24
1968 2202 4.785346 ACGGAGGGAGTAGTTGTAGATA 57.215 45.455 0.00 0.00 0.00 1.98
1969 2203 3.666345 ACGGAGGGAGTAGTTGTAGAT 57.334 47.619 0.00 0.00 0.00 1.98
1970 2204 3.679917 CGTACGGAGGGAGTAGTTGTAGA 60.680 52.174 7.57 0.00 0.00 2.59
1971 2205 2.611292 CGTACGGAGGGAGTAGTTGTAG 59.389 54.545 7.57 0.00 0.00 2.74
1972 2206 2.632377 CGTACGGAGGGAGTAGTTGTA 58.368 52.381 7.57 0.00 0.00 2.41
1973 2207 1.457346 CGTACGGAGGGAGTAGTTGT 58.543 55.000 7.57 0.00 0.00 3.32
1974 2208 0.737219 CCGTACGGAGGGAGTAGTTG 59.263 60.000 30.64 0.00 37.50 3.16
1975 2209 0.620556 TCCGTACGGAGGGAGTAGTT 59.379 55.000 32.61 0.00 39.76 2.24
1976 2210 0.620556 TTCCGTACGGAGGGAGTAGT 59.379 55.000 33.67 0.00 46.06 2.73
1977 2211 1.978454 ATTCCGTACGGAGGGAGTAG 58.022 55.000 33.67 6.57 46.06 2.57
1978 2212 2.442236 AATTCCGTACGGAGGGAGTA 57.558 50.000 33.67 20.54 46.06 2.59
1979 2213 2.027385 GTAATTCCGTACGGAGGGAGT 58.973 52.381 33.67 22.32 46.06 3.85
1980 2214 2.305009 AGTAATTCCGTACGGAGGGAG 58.695 52.381 33.67 8.83 46.06 4.30
1981 2215 2.442236 AGTAATTCCGTACGGAGGGA 57.558 50.000 33.67 22.01 46.06 4.20
1982 2216 3.119029 TGAAAGTAATTCCGTACGGAGGG 60.119 47.826 33.67 9.98 46.06 4.30
1983 2217 4.114058 TGAAAGTAATTCCGTACGGAGG 57.886 45.455 33.67 10.36 46.06 4.30
1984 2218 7.760131 TTTATGAAAGTAATTCCGTACGGAG 57.240 36.000 33.67 11.13 46.06 4.63
1985 2219 8.545229 TTTTTATGAAAGTAATTCCGTACGGA 57.455 30.769 32.61 32.61 43.52 4.69
1986 2220 9.217223 CATTTTTATGAAAGTAATTCCGTACGG 57.783 33.333 28.66 28.66 37.22 4.02
1987 2221 9.976255 TCATTTTTATGAAAGTAATTCCGTACG 57.024 29.630 8.69 8.69 37.22 3.67
2071 2305 9.888878 CTCTGTTCGGAATTACTCGTAAATATA 57.111 33.333 0.00 0.00 0.00 0.86
2072 2306 8.627403 TCTCTGTTCGGAATTACTCGTAAATAT 58.373 33.333 0.00 0.00 0.00 1.28
2073 2307 7.988737 TCTCTGTTCGGAATTACTCGTAAATA 58.011 34.615 0.00 0.00 0.00 1.40
2074 2308 6.860080 TCTCTGTTCGGAATTACTCGTAAAT 58.140 36.000 0.00 0.00 0.00 1.40
2075 2309 6.258230 TCTCTGTTCGGAATTACTCGTAAA 57.742 37.500 0.00 0.00 0.00 2.01
2076 2310 5.885230 TCTCTGTTCGGAATTACTCGTAA 57.115 39.130 0.00 0.00 0.00 3.18
2077 2311 5.885230 TTCTCTGTTCGGAATTACTCGTA 57.115 39.130 0.00 0.00 0.00 3.43
2078 2312 4.778534 TTCTCTGTTCGGAATTACTCGT 57.221 40.909 0.00 0.00 0.00 4.18
2079 2313 6.648725 ATTTTCTCTGTTCGGAATTACTCG 57.351 37.500 0.00 0.00 0.00 4.18
2080 2314 8.705048 ACTATTTTCTCTGTTCGGAATTACTC 57.295 34.615 0.00 0.00 0.00 2.59
2110 2344 9.688592 CCTCCGTTTAGAATTACTCGTAAATAT 57.311 33.333 0.00 0.00 0.00 1.28
2111 2345 8.137437 CCCTCCGTTTAGAATTACTCGTAAATA 58.863 37.037 0.00 0.00 0.00 1.40
2112 2346 6.982724 CCCTCCGTTTAGAATTACTCGTAAAT 59.017 38.462 0.00 0.00 0.00 1.40
2113 2347 6.152661 TCCCTCCGTTTAGAATTACTCGTAAA 59.847 38.462 0.00 0.00 0.00 2.01
2114 2348 5.652014 TCCCTCCGTTTAGAATTACTCGTAA 59.348 40.000 0.00 0.00 0.00 3.18
2115 2349 5.192927 TCCCTCCGTTTAGAATTACTCGTA 58.807 41.667 0.00 0.00 0.00 3.43
2116 2350 4.019174 TCCCTCCGTTTAGAATTACTCGT 58.981 43.478 0.00 0.00 0.00 4.18
2117 2351 4.097589 ACTCCCTCCGTTTAGAATTACTCG 59.902 45.833 0.00 0.00 0.00 4.18
2118 2352 5.595257 ACTCCCTCCGTTTAGAATTACTC 57.405 43.478 0.00 0.00 0.00 2.59
2119 2353 6.193504 ACTACTCCCTCCGTTTAGAATTACT 58.806 40.000 0.00 0.00 0.00 2.24
2120 2354 6.462552 ACTACTCCCTCCGTTTAGAATTAC 57.537 41.667 0.00 0.00 0.00 1.89
2121 2355 8.773033 ATTACTACTCCCTCCGTTTAGAATTA 57.227 34.615 0.00 0.00 0.00 1.40
2122 2356 7.672122 ATTACTACTCCCTCCGTTTAGAATT 57.328 36.000 0.00 0.00 0.00 2.17
2123 2357 7.672122 AATTACTACTCCCTCCGTTTAGAAT 57.328 36.000 0.00 0.00 0.00 2.40
2124 2358 8.773033 ATAATTACTACTCCCTCCGTTTAGAA 57.227 34.615 0.00 0.00 0.00 2.10
2125 2359 9.289782 GTATAATTACTACTCCCTCCGTTTAGA 57.710 37.037 0.00 0.00 0.00 2.10
2126 2360 9.294614 AGTATAATTACTACTCCCTCCGTTTAG 57.705 37.037 0.00 0.00 36.89 1.85
2127 2361 9.646522 AAGTATAATTACTACTCCCTCCGTTTA 57.353 33.333 7.57 0.00 37.70 2.01
2128 2362 8.419442 CAAGTATAATTACTACTCCCTCCGTTT 58.581 37.037 7.57 0.00 37.70 3.60
2129 2363 7.471120 GCAAGTATAATTACTACTCCCTCCGTT 60.471 40.741 7.57 0.00 37.70 4.44
2130 2364 6.015603 GCAAGTATAATTACTACTCCCTCCGT 60.016 42.308 7.57 0.00 37.70 4.69
2131 2365 6.015688 TGCAAGTATAATTACTACTCCCTCCG 60.016 42.308 7.57 0.00 37.70 4.63
2132 2366 7.015389 AGTGCAAGTATAATTACTACTCCCTCC 59.985 40.741 0.00 0.18 37.70 4.30
2133 2367 7.953752 AGTGCAAGTATAATTACTACTCCCTC 58.046 38.462 0.00 4.84 37.70 4.30
2134 2368 7.255520 CGAGTGCAAGTATAATTACTACTCCCT 60.256 40.741 13.24 3.76 37.83 4.20
2135 2369 6.862090 CGAGTGCAAGTATAATTACTACTCCC 59.138 42.308 13.24 4.47 37.83 4.30
2136 2370 6.862090 CCGAGTGCAAGTATAATTACTACTCC 59.138 42.308 13.24 4.70 37.83 3.85
2137 2371 7.646314 TCCGAGTGCAAGTATAATTACTACTC 58.354 38.462 10.73 10.73 37.70 2.59
2138 2372 7.578310 TCCGAGTGCAAGTATAATTACTACT 57.422 36.000 0.00 0.00 37.70 2.57
2139 2373 7.703621 TGTTCCGAGTGCAAGTATAATTACTAC 59.296 37.037 0.00 0.00 37.70 2.73
2140 2374 7.774134 TGTTCCGAGTGCAAGTATAATTACTA 58.226 34.615 0.00 0.00 37.70 1.82
2141 2375 6.636705 TGTTCCGAGTGCAAGTATAATTACT 58.363 36.000 0.00 0.00 40.48 2.24
2142 2376 6.897259 TGTTCCGAGTGCAAGTATAATTAC 57.103 37.500 0.00 0.00 0.00 1.89
2144 2378 9.944376 ATATATGTTCCGAGTGCAAGTATAATT 57.056 29.630 0.00 0.00 0.00 1.40
2174 2408 5.309638 TGCTGGTTTGTTTACTGCTATACA 58.690 37.500 0.00 0.00 0.00 2.29
2183 2417 4.972286 GCAGAATTGCTGGTTTGTTTAC 57.028 40.909 0.00 0.00 46.95 2.01
2219 2453 4.397103 CCACAGATTGCAGAAGAATAAGCA 59.603 41.667 0.00 0.00 34.79 3.91
2221 2455 5.879223 ACTCCACAGATTGCAGAAGAATAAG 59.121 40.000 0.00 0.00 0.00 1.73
2222 2456 5.809001 ACTCCACAGATTGCAGAAGAATAA 58.191 37.500 0.00 0.00 0.00 1.40
2257 2495 1.429463 GGAGTGTTGCAGTACGGAAG 58.571 55.000 0.00 0.00 0.00 3.46
2265 2503 1.526575 AAATGGCCGGAGTGTTGCAG 61.527 55.000 5.05 0.00 0.00 4.41
2306 2544 0.931005 CGCCCGTTAAAGCTGAGATC 59.069 55.000 0.00 0.00 0.00 2.75
2315 2553 0.461339 GAGCAGGATCGCCCGTTAAA 60.461 55.000 0.00 0.00 40.87 1.52
2441 2717 2.231235 CCCTTACCCACTGAAACAATGC 59.769 50.000 0.00 0.00 0.00 3.56
2450 2726 1.557832 TCGATTTCCCCTTACCCACTG 59.442 52.381 0.00 0.00 0.00 3.66
2451 2727 1.961133 TCGATTTCCCCTTACCCACT 58.039 50.000 0.00 0.00 0.00 4.00
2452 2728 2.572290 CATCGATTTCCCCTTACCCAC 58.428 52.381 0.00 0.00 0.00 4.61
2454 2730 1.143073 AGCATCGATTTCCCCTTACCC 59.857 52.381 0.00 0.00 0.00 3.69
2457 2733 5.130477 ACTTTAGAGCATCGATTTCCCCTTA 59.870 40.000 0.00 0.00 42.67 2.69
2461 2737 7.873505 AGTAATACTTTAGAGCATCGATTTCCC 59.126 37.037 0.00 0.00 42.67 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.