>input_sequence_78114
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-------------------------------------------------ATGGCTGGAGAGCAAGCGTTCCACCGGGGAG
GCGTGCACGGAGGCGGCAGCGCCATCGGGCCGGACTACATGCGGGCCATCCGCGGCGACGACGACTACTACGGCGGGCAC
GGCCAGGGCTACAACCAGCCGGCGACCGTCACCCTCGCGAAGGGGGTGGCCGCGGCGGCGGCGGCCGGGTCGATGCTGCT
CCTGTCGGCCCTGACGCTGACGGGCACGGTGCTGGCGCTCATCGTGGCGACGCCGCTGCTGGTGCTCTTCAGCCCCGTGC
TGGTGCCCGCGGCCATAGCCGTCACGATGCTGACGGCCGGGTTCGTGTCGTCGGGGGCGTTCGGCGCGGCGGCGGTGGGC
GTGCTGGCGTGGATGTACAAGTATCTGTCGCACGGCGCATCCTCGCCGCCGGGGGCCGACACGGTGGACCACGCCGGTGC
GAAGCTGGACTCCAAGGCGCACGAGGTGAAGAACTGGGCGCAGCATCGCCTCGACCAGGCACGAACGCCGTAG-------
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>chr5B_1_TraesCS5B01G181700
GTAACATCATGTTTTTGAGGGAGTATATTTTTTCAATGGTTTGGATTGCTTACCACATGTGTCATCTGGTTTTTGAGAGA
ATATGTTGATGACATGTTAAAACACATCTAGATGAGATGCTACTTTCTTCGTCCTAAAATAAGTGTCTCAACTTTGTACT
AACTTTAGTACAAAGTTGTATTAAGCTTGAGACACTTATTTTGAGACGGAGGAAGCATTTTACATCTAGACATGAAATAG
GTAACTCACATTTAAGTCTCTCATCACACGATCAAGACTGTAATTTTCGTGCAAATTTTGTTAGAATCCCGAAACCGCAG
CCAACGCGGACGATTTCGGGAAAGCTGGGCTCGAGCGCCGAATCGCTGCATCCACTTTTCTCTAACTTAAGTTAGGGCTT
ACAGGCGTATCAACTTACAAGTTTACCACATCAAAAATAAAAGGAAAAAGAAACTTACAAGGTTACCAATTGAAGCCTAA
AAAGAACAATATACCGTGGCACTCGAATTCAAAAACCTGTTAAAACAGAATTTGAGTTCGAGAATTATCGAG-AGCCAAA
CGTCACTTAAGTGAAAATTTATAAAGCGGCATCCAGCTCAAC-------GCGTGGGCCGGCAAGGCAACGGGCACACCAT
CGATGGAGGACGTCATGTTGAAACCCTGTCCTGCAGGCTGCTCGTCGAGCTCAGCGGCGC-GGAAAGGGTACTGCATTCG
CGACACGTAGGACGAGAGGACGCCGGGAGCCTGCAAGTTGGCACGTACGTGGTATGGATTGAGGCATCGCTATCCATGCA
GATCGCGCCCCTCGACACGTGCCCGAGGTATGCGGCCACATGTCCGAGACTCGCTCCACCGCCTTCGTCCACACTCTCGC
CCACATCGCATCTTATATACCACGATCCATCTCGCCGAGAAACCCACGGCGCATTTGGCTATCGCATTTCTCAGGTGAGG
CTCAGGTTTCGGAGCAGCGAAGCTTTCAAGTGTGCATCTGCCTACAGGCATGGCTGGAGAGCAAGCGTTCCACCGGGGAG
GCGTGCACGGAGGCGGCAGCGCCATCGGGCCGGACTACATGCGGGCCATCCGCGGCGACGACGACTACTACGGCGGGCAC
GGCCAGGGCTACAACCAGCCGGCGACCGTCACCCTCGCGAAGGGGGTGGCCGCGGCGGCGGCGGCCGGGTCGATGCTGCT
CCTGTCGGCCCTGACGCTGACGGGCACGGTGCTGGCGCTCATCGTGGCGACGCCGCTGCTGGTGCTCTTCAGCCCCGTGC
TGGTGCCCGCGGCCATAGCCGTCACGATGCTGACGGCCGGGTTCGTGTCGTCGGGGGCGTTCGGCGCGGCGGCGGTGGGC
GTGCTGGCGTGGATGTACAAGTATCTGTCGCACGGCGCATCCTCGCCGCCGGGGGCCGACACGGTGGACCACGCCGGTGC
GAAGCTGGACTCCAAGGCGCACGAGGTGAAGAACTGGGCGCAGCATCGCCTCGACCAGGCACGAACGCCGTAGACATGTT
GTCATTTGCCCTCCTATGCGTTACCA----------GTGTGTGTGTGGATCGACGCCTCTATATGTAGGGACGTGCCTGC
GAGCGGTGCTACTTACCCCCGATGAATAATAAGCTGCATATCTGCTACTCATCTCCTCTGGAGAGGGAGTTAAGAATAG-
-------ATCTCTTGTGTTGGTTCTTGTGCCGTCT---------ACTTGCGCTGCTTCGTCTTCACCTTCAAGGACTTCT
G--ATTTGGAGTCCACGTCGTTCATATTACTGCCTTGAACACGAT-----------------------------------
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-------------------------------------------------------------------------------G
ATCCTCGATTCCTTCTATGCTGCCGCTCCAATTCCTAAATCCCTCTTCTGTTCTTAAAACTGTTTTAACGCCCCAACAAT
TTGCTTGAATCGCA-CCTGAAATTGCATATTATTCGTGCTACCTTCAGTTCCGCCCTTACAAATGGCAGCACCCCACAAG
AACTACTCCCTCCGTTCGGAATTTGTCAAAAAAAATGAATGTATCTACAACTACTCCCTCCGTACGGAATTACTTTCATA
AAAATGAATGTATCTAGAACTAAAATACATCTAGATACATATTTTGAACAAAGAAAATAGTAATTATATTTACGAGTAAT
TCCGAACAGAGAAAATAGTAATTATATTTACGAGTAATTCTAAACGGAGGGAGTAGTAATTATACTTGCACTCGGAACAT
ATATTTTTGTATAGCAGTAAACAAACCAGCAATTCTGCCCTGACAGTGGTGCTGCTT----ATTCTTCTGCAATCTGTGG
AGTTCATTTCTGCCCTTCCGTACTGCAACACTCCGGCCATTTCTGTCCCCTACCCCACACATGGATCTCAGCTTTAACGG
GCGATCCTGCTCTCAGATGAACAGTAAAAATGTAAACTCAGATGAACAGTAAAACATACAATAAATTTTAAAAAATAG--
------------------------------------AATTTGTGGTGACAAACATTGTTGAATGTTTCACATGTCTGCAT
TGTTTCAGTGGGTAAGGGGAAATCGATGCTCTAAAGTA-TTACTTTTTGAAACATTTTGG
>chr5A_479
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------------------------------------------------------------------------------AA
AAAAAACAATATACCGTGGCACTCGAATTCGAAAACCTGTTAAAACAGAATTTGAGTTCGAGAATTATCGAGAAGCCAAA
CGTCTC-TAAGTGAAAATTTATAAAGCGGCATCCAGCTCAACTTCAGACGCGTGGGCCGGCAAGGCGACGGGCACACCGT
CGATGGAGGACGTCATTTTGAAACCCTGTCCTGCAGGCTGCTCGTCGAGCTCAGCGGCGC-GGGAAGGGTACTGCATTCG
CAACACGTAGGATGGGAGGACGCCGGGAGCCTGCAAGTTGGCACGTACGTGGCACGGCTTGAGGCATCGCTATCCATGCA
GATCACGCCCCTCGCCACGTGCCCCATGTATGCGGCCACATGTCCGAGACTCGCTCCACCGCCTTCGTCCACACTCTCAC
CCACATCGCATCTTATATACCACGATCCATCTCGGCGAGAAACCCACCGCGCATTTGGCTATCGCATTTCTCAGGTGAGG
CTCAGGTTCCGGAGTAGCGAAGCTT-CAAGTGCGCATCTGGGTACCGGCATGGCTGGAGAGCAGGCGTTCCACCGGGGAG
GCGTGCACGGAGGCGGCAGCGCCATCGGGCCGGACTACATGCGGGCCATCCGCGGCGACGACGACTACTACGGCGGGCAC
GGCCAGGGCCACAGCCAGCCGGCGGCCGTCACCCTCGCGAAGGGGGTGGCCGCGGCGGCGGCGGCGGGGTCGATGCTGCT
CCTGTCGGCCCTGACGCTGACGGGCACGGTGCTGGCGCTGATCGTGGCGACGCCGCTGCTGGTGCTCTTCAGCCCCGTGC
TGGTGCCCGCGGCCATCGCCGCCACGGTGCTGACGGCCGGGTTCGTCTCGTCGGGGGCGTTCGGCGCGGCGGCGGTGGGG
GTGCTGGCGTGGATGTACAAGTACCTGTCGCACGGGGCGTCCTCGCCGCCGGGGGCCGACACGGTGGACCACGCGGGCGC
GAAGCTGGACTCCAAGGCGCACGAGGTGAAGAACTGGGCGCAGCATCGCCTCGACCAGGCACGAACGCCGTAGACGTGTC
GTCATTTGCCCTCCTATGCGTCACCA----------GTGTG--TGTGGATCGACGCCTCTATATGTACGGACGTGCCCGC
GAGCGGTGCTACTTACCACCGATGAATAATAAGCTGCATATCTCCTCTGGA----------AGAGGGAGTTAAAAATAGT
ACTGTAGATCTCTTCTGCTTGTTCCTTGTGCGGTTGTTCCGTCCACTTGCGCTGCTTCGTCTTCACCTGCAAGGACTTCT
G--AT---------------------------------------------------------------------------
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>chr5D_641
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--------GACGTCAAGTTGGAACCCTGTCCTGCAGGCTGCTGGTGGAGCTCAGCGGCGCGGGGAAGGGTACTGCATTCG
CAACACGTAGGACGGGAGGACGCCGGGAGCCTGCAAGTTGGCACGTACGTGGCAAGGCTTGAGGCATCGCTATCCATGCA
GATCACGCCCCTCGCCACGTGCCCCAGGTATGCGGCCACATGTCCGAGACTCGCTCCACCGTCTTCGTCCACACTCTCAC
CCCCATCGCATCTTATATACCACGATCCATCTCGGCGAGAAACTCACCGCGCATTTGGCTATCGCATTTCTCAGGTGAGC
CTCAGGTTTCAGAGCAGCGAAGCTT-CAAGTGCGCATCTGGGTACCGGCATGGCTGGAGAGCAAGCGTTCCACCGGGGAG
GCGTGCACGGGGGCGGCAGCGCCATCGGGCCGGACTACATGCGGGCCATCCGCGGCGACGACGACTACTACGGCGGGCAC
GGCCAGGGCCACAACCAGCCGGCGGCCGTCACCCTCGCGAAGGGAGTGGCCGCGGCGGCGGCGGCGGGGTCGATGCTGCT
CCTGTCGGCCCTGACGCTGACGGGCACGGTGCTGGCGCTGATCGTGGCGACGCCGCTGCTGGTGCTCTTCAGCCCCGTGC
TGGTGCCCGCGGCCATCGCGGTGACGATGCTGACGGCCGGGTTCGTGTCGTCGGGGGCGTTCGGCGCGGCGGCGGTGGGG
GTGCTGGCGTGGATGTACAAGTACCTCTCGCACGGGACGTCCTCGCCGCCGGGGGCCGACACGGTGGACCACGCGGGCGC
GAAGCTGGACTCCAAGGCGCACGAGGTGAAGAACTGGGCGCAGCATCGCCTCGACCAGGCCCGAACGCCGTAGATGCGTC
GTCATTCGCCCTCCTATGCGTTACCAGTGTGTGCGTGTGTG--TGTGGATCGACGCCTCTATATGTACGGACGTGCCTGC
GAGCGGTGCTACTTAACACCGATGAATAATAAGCTGCATATCTGCTACTCATCCCCTCTGGAGAGGGAGTTAAGAATAG-
-------ATCTCTTGTGCTTGTTCCTGTGCCGTCT---------ACTTGCGCTGCTTCGTCTTCACCTGCAAGGACTTCT
GTGATTCGGAGTCCACGTCGTCCATATTACTGCCTTCTTTTTTCGGGGTTAAAAGGGATTTTCATTGCTCAATGGGGAAC
CAGGTCGTCCATACAAAGTTGGGGTACATCCGTAGGGCATGACCTCAACCAAACTGCAGTCCTAGCCTCTACGCGGACGG
CCAAACGTGGCTAATCTATGACTAACAGAATTTTGATTCCTACTAATGTGAGCAATAGAGCTATCCCTTTCACGTAGGAG
ATCCTCGATTCCTTCTATGCTGCGGCTCTAATTCATAAATCCCTCCTCTGTTCTT-AAACTGTTTTAACGCCTAAACAAT
T-GCTTGAGTCGCACCCTGAAATTGCATATTATTTCTGCTACCTTCAGTTCTGCCCTTACAAATGGCAGCACCCCACAAG
AACTA---------------------------------------------------------------------------
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----------------------------------------------------------ATTATACTTGCACTCG-AACAT
ATATTTTGGTATAGCACTAAACA----AGCAATTCTGCCCTGACAGTGGTGCAGTCTGCTCATTCTTCTGCAATCTGTGG
AGTTCATTTCTGCCATTCCGTATTGCAACACTCCGGCCATTTCTGTCCCCTACCACACACATGAATCTCAGCGTTAACGG
GCGATCCTGCTCTCAGATGAACAG-AAAAATGTAAAC----ATGAACAGTAAAATGCAAAATAAATTTTGAAAAAGAAAA
TTTGTAGTAGAATGTAAAATAATTTTTTATAAACAAAATTTGTTGTGACAAACATTGTTGAATGTTTCACATGTCTTCAT
TGTTTAGTTCGGCAAGCGAAAATCGATGCTCTAAAGATGTTACTTTTTGAAACATTTTG-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
---S--------------------------S-------------------------------------------------
----S-S-----------------------------------------------------------S-----------S-
---------------------------------------------------------------S----------------
-S------------S-------------------------------------S-S--S----------------------
----S---------S---------S-----------------------------------------------------S-
----------------------------------S------------S--------------------------------
-------------------------S------S-------SS---S----------------------------------
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---------S--------------S----------------------------------------S--------------
---------------------------------------S----------------------------------------
----------------S--------------------------------------------------------------S
-----------------------S-----------S--S-----------------------------------S--S--
---------------------------------------------------------------------------S---S
-----------------------------------------SS------------------------S------------
-----------------S-----------------------------------S--------------------------
-----------------S-S----S-------------------------------------------S-----------
------S--------------S--------------SSSSSSSSS-----------------------------------
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-----------------------S----S-----S----------S---------S----------------SS------
-S------S-------------------------SS---------------S----------------------------
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S-----
-------S--------S------SSSS-------------------------S-SS------------------------
--------------S-------S-------------------------------S--------S--------S-------
------------------------S------------SSSS-------------SSS-S----------S-----S-S--
-------------------------------------------S--------------------------------S---
-----SSS-S--S---S-S-----------------SS---------------------S
>forward_722
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--------------------------------------------------------------GAAAGGGTACTGCATTCG
CG------------------------------------------------------------------------------
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>reverse_2553
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------------------------------------------------------------------------TTTAACGG
GCGATCCTGCTC--------------------------------------------------------------------
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