Multiple sequence alignment - TraesCS5B01G170900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G170900 chr5B 100.000 2960 0 0 1 2960 315835449 315832490 0.000000e+00 5467.0
1 TraesCS5B01G170900 chr5D 92.984 1468 66 15 514 1961 277633495 277632045 0.000000e+00 2106.0
2 TraesCS5B01G170900 chr5D 90.610 639 33 4 2344 2959 277632025 277631391 0.000000e+00 822.0
3 TraesCS5B01G170900 chr5D 95.257 253 11 1 7 259 277633839 277633588 1.650000e-107 399.0
4 TraesCS5B01G170900 chr5D 90.323 186 17 1 1985 2169 49556000 49555815 2.950000e-60 243.0
5 TraesCS5B01G170900 chr5D 96.970 99 3 0 2248 2346 326576376 326576474 1.820000e-37 167.0
6 TraesCS5B01G170900 chr5D 95.098 102 1 4 240 340 277633577 277633479 1.100000e-34 158.0
7 TraesCS5B01G170900 chr5A 93.793 1305 57 7 663 1957 366761997 366760707 0.000000e+00 1940.0
8 TraesCS5B01G170900 chr5A 83.412 639 59 22 2344 2949 366760676 366760052 1.550000e-152 549.0
9 TraesCS5B01G170900 chr5A 94.955 337 13 4 7 340 366762399 366762064 2.610000e-145 525.0
10 TraesCS5B01G170900 chr5A 95.349 86 4 0 514 599 366762080 366761995 1.430000e-28 137.0
11 TraesCS5B01G170900 chr5A 90.323 93 9 0 2158 2250 90623753 90623661 4.010000e-24 122.0
12 TraesCS5B01G170900 chr4D 92.265 181 14 0 333 513 35722483 35722303 1.050000e-64 257.0
13 TraesCS5B01G170900 chr4D 90.811 185 16 1 1986 2169 403626036 403626220 2.280000e-61 246.0
14 TraesCS5B01G170900 chr4D 100.000 28 0 0 688 715 118339463 118339490 5.000000e-03 52.8
15 TraesCS5B01G170900 chr3D 92.308 182 13 1 333 513 506177312 506177131 1.050000e-64 257.0
16 TraesCS5B01G170900 chr3D 90.710 183 16 1 1988 2169 505973685 505973503 2.950000e-60 243.0
17 TraesCS5B01G170900 chr3D 88.177 203 23 1 324 526 478422473 478422674 1.060000e-59 241.0
18 TraesCS5B01G170900 chr3D 88.325 197 21 2 332 526 104099031 104098835 4.930000e-58 235.0
19 TraesCS5B01G170900 chr3D 94.186 86 5 0 2166 2251 121536151 121536236 6.660000e-27 132.0
20 TraesCS5B01G170900 chr6D 88.725 204 22 1 320 522 167226297 167226500 6.340000e-62 248.0
21 TraesCS5B01G170900 chr2B 90.860 186 15 1 1984 2169 249190771 249190588 6.340000e-62 248.0
22 TraesCS5B01G170900 chr2B 90.811 185 16 1 1986 2169 574660668 574660484 2.280000e-61 246.0
23 TraesCS5B01G170900 chr2B 88.119 101 10 2 2160 2259 514214527 514214626 5.180000e-23 119.0
24 TraesCS5B01G170900 chr2D 89.340 197 20 1 327 522 540163583 540163779 2.280000e-61 246.0
25 TraesCS5B01G170900 chr2D 92.553 94 7 0 2158 2251 25037876 25037969 5.150000e-28 135.0
26 TraesCS5B01G170900 chr2D 85.841 113 12 4 2160 2270 582629071 582628961 1.860000e-22 117.0
27 TraesCS5B01G170900 chr4A 90.710 183 16 1 1988 2169 646603514 646603332 2.950000e-60 243.0
28 TraesCS5B01G170900 chr4A 82.609 69 8 4 688 753 455273990 455273923 1.150000e-04 58.4
29 TraesCS5B01G170900 chr7B 89.175 194 20 1 1985 2177 192363389 192363196 1.060000e-59 241.0
30 TraesCS5B01G170900 chr7B 88.235 204 19 4 1969 2169 8896503 8896302 3.810000e-59 239.0
31 TraesCS5B01G170900 chr7B 86.957 207 25 2 313 518 18199194 18199399 6.380000e-57 231.0
32 TraesCS5B01G170900 chr7B 97.959 98 2 0 2249 2346 582381503 582381600 1.410000e-38 171.0
33 TraesCS5B01G170900 chr7B 84.956 113 13 4 2160 2270 540297447 540297337 8.670000e-21 111.0
34 TraesCS5B01G170900 chr7B 96.875 32 0 1 687 718 567997569 567997539 5.000000e-03 52.8
35 TraesCS5B01G170900 chr2A 89.947 189 16 3 1984 2169 118226214 118226402 1.060000e-59 241.0
36 TraesCS5B01G170900 chr2A 91.209 91 7 1 2162 2251 367647275 367647365 4.010000e-24 122.0
37 TraesCS5B01G170900 chr6A 88.832 197 19 3 327 521 537876452 537876257 3.810000e-59 239.0
38 TraesCS5B01G170900 chr1A 87.923 207 19 6 323 526 549554827 549554624 3.810000e-59 239.0
39 TraesCS5B01G170900 chr6B 84.865 185 21 7 2166 2346 614580400 614580581 2.340000e-41 180.0
40 TraesCS5B01G170900 chr4B 94.545 110 6 0 2238 2347 15260612 15260721 1.410000e-38 171.0
41 TraesCS5B01G170900 chr4B 96.970 99 3 0 2249 2347 611495551 611495453 1.820000e-37 167.0
42 TraesCS5B01G170900 chr3B 96.154 104 3 1 2249 2351 236969009 236969112 5.070000e-38 169.0
43 TraesCS5B01G170900 chr3B 96.970 99 3 0 2248 2346 579971813 579971715 1.820000e-37 167.0
44 TraesCS5B01G170900 chr1B 95.327 107 4 1 2249 2355 157460342 157460447 5.070000e-38 169.0
45 TraesCS5B01G170900 chr3A 95.146 103 4 1 2249 2351 385575163 385575062 8.490000e-36 161.0
46 TraesCS5B01G170900 chrUn 91.398 93 8 0 2159 2251 62663395 62663487 8.610000e-26 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G170900 chr5B 315832490 315835449 2959 True 5467.00 5467 100.00000 1 2960 1 chr5B.!!$R1 2959
1 TraesCS5B01G170900 chr5D 277631391 277633839 2448 True 871.25 2106 93.48725 7 2959 4 chr5D.!!$R2 2952
2 TraesCS5B01G170900 chr5A 366760052 366762399 2347 True 787.75 1940 91.87725 7 2949 4 chr5A.!!$R2 2942

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
388 420 0.253044 TGCCACATCTAAGCTCCCAC 59.747 55.0 0.0 0.0 0.00 4.61 F
1149 1206 0.030297 AGGTCAGGCATCTCCTCCAT 60.030 55.0 0.0 0.0 45.52 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1250 1307 0.108424 CGACCTTCTCCTCAGCTTGG 60.108 60.0 0.00 0.0 0.00 3.61 R
1984 2057 0.110486 CCCGTTATGGCCAGCCTAAT 59.890 55.0 13.05 0.0 36.94 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
160 161 2.999185 ATCCCCCAGCTTTCAAGAAA 57.001 45.000 0.00 0.00 0.00 2.52
162 163 3.258722 TCCCCCAGCTTTCAAGAAAAT 57.741 42.857 0.00 0.00 0.00 1.82
214 217 6.089249 ACCAAATAGAAAGGAAAAGCTGTG 57.911 37.500 0.00 0.00 0.00 3.66
217 220 6.239289 CCAAATAGAAAGGAAAAGCTGTGGAA 60.239 38.462 0.00 0.00 0.00 3.53
225 228 3.471680 GAAAAGCTGTGGAAGACTGAGT 58.528 45.455 0.00 0.00 0.00 3.41
294 326 6.183360 GCATATGCTTCTCTATTCTGCATCAG 60.183 42.308 20.64 0.00 42.42 2.90
320 352 8.840867 GTTGAAATCGAAGTAGCACAAAATTAG 58.159 33.333 0.00 0.00 0.00 1.73
325 357 9.821662 AATCGAAGTAGCACAAAATTAGTAAAC 57.178 29.630 0.00 0.00 0.00 2.01
326 358 8.367943 TCGAAGTAGCACAAAATTAGTAAACA 57.632 30.769 0.00 0.00 0.00 2.83
327 359 8.828644 TCGAAGTAGCACAAAATTAGTAAACAA 58.171 29.630 0.00 0.00 0.00 2.83
328 360 9.607285 CGAAGTAGCACAAAATTAGTAAACAAT 57.393 29.630 0.00 0.00 0.00 2.71
382 414 5.835113 TTTTAAGGATGCCACATCTAAGC 57.165 39.130 7.45 0.00 0.00 3.09
383 415 4.778213 TTAAGGATGCCACATCTAAGCT 57.222 40.909 7.45 0.00 0.00 3.74
384 416 2.926778 AGGATGCCACATCTAAGCTC 57.073 50.000 7.45 0.00 0.00 4.09
385 417 1.419387 AGGATGCCACATCTAAGCTCC 59.581 52.381 7.45 0.00 0.00 4.70
386 418 1.544314 GGATGCCACATCTAAGCTCCC 60.544 57.143 7.45 0.00 0.00 4.30
387 419 1.141657 GATGCCACATCTAAGCTCCCA 59.858 52.381 0.31 0.00 0.00 4.37
388 420 0.253044 TGCCACATCTAAGCTCCCAC 59.747 55.000 0.00 0.00 0.00 4.61
389 421 0.253044 GCCACATCTAAGCTCCCACA 59.747 55.000 0.00 0.00 0.00 4.17
390 422 1.133976 GCCACATCTAAGCTCCCACAT 60.134 52.381 0.00 0.00 0.00 3.21
391 423 2.104792 GCCACATCTAAGCTCCCACATA 59.895 50.000 0.00 0.00 0.00 2.29
392 424 3.733337 CCACATCTAAGCTCCCACATAC 58.267 50.000 0.00 0.00 0.00 2.39
393 425 3.134623 CCACATCTAAGCTCCCACATACA 59.865 47.826 0.00 0.00 0.00 2.29
394 426 4.202398 CCACATCTAAGCTCCCACATACAT 60.202 45.833 0.00 0.00 0.00 2.29
395 427 5.012046 CCACATCTAAGCTCCCACATACATA 59.988 44.000 0.00 0.00 0.00 2.29
396 428 6.296087 CCACATCTAAGCTCCCACATACATAT 60.296 42.308 0.00 0.00 0.00 1.78
397 429 7.093333 CCACATCTAAGCTCCCACATACATATA 60.093 40.741 0.00 0.00 0.00 0.86
398 430 8.314021 CACATCTAAGCTCCCACATACATATAA 58.686 37.037 0.00 0.00 0.00 0.98
399 431 9.051259 ACATCTAAGCTCCCACATACATATAAT 57.949 33.333 0.00 0.00 0.00 1.28
400 432 9.322773 CATCTAAGCTCCCACATACATATAATG 57.677 37.037 0.00 0.00 0.00 1.90
401 433 7.331026 TCTAAGCTCCCACATACATATAATGC 58.669 38.462 0.00 0.00 0.00 3.56
402 434 5.503634 AGCTCCCACATACATATAATGCA 57.496 39.130 0.00 0.00 0.00 3.96
403 435 5.879763 AGCTCCCACATACATATAATGCAA 58.120 37.500 0.00 0.00 0.00 4.08
404 436 5.707298 AGCTCCCACATACATATAATGCAAC 59.293 40.000 0.00 0.00 0.00 4.17
405 437 5.473162 GCTCCCACATACATATAATGCAACA 59.527 40.000 0.00 0.00 0.00 3.33
406 438 6.016360 GCTCCCACATACATATAATGCAACAA 60.016 38.462 0.00 0.00 0.00 2.83
407 439 7.270757 TCCCACATACATATAATGCAACAAC 57.729 36.000 0.00 0.00 0.00 3.32
408 440 6.830838 TCCCACATACATATAATGCAACAACA 59.169 34.615 0.00 0.00 0.00 3.33
409 441 7.340487 TCCCACATACATATAATGCAACAACAA 59.660 33.333 0.00 0.00 0.00 2.83
410 442 7.648908 CCCACATACATATAATGCAACAACAAG 59.351 37.037 0.00 0.00 0.00 3.16
411 443 8.404765 CCACATACATATAATGCAACAACAAGA 58.595 33.333 0.00 0.00 0.00 3.02
412 444 9.786105 CACATACATATAATGCAACAACAAGAA 57.214 29.630 0.00 0.00 0.00 2.52
417 449 9.539825 ACATATAATGCAACAACAAGAAACAAA 57.460 25.926 0.00 0.00 0.00 2.83
455 487 5.982890 AAAATAGACCACAAACAGGATGG 57.017 39.130 0.00 0.00 43.62 3.51
456 488 4.927267 AATAGACCACAAACAGGATGGA 57.073 40.909 0.00 0.00 43.62 3.41
457 489 2.568623 AGACCACAAACAGGATGGAC 57.431 50.000 0.00 0.00 43.62 4.02
458 490 1.774254 AGACCACAAACAGGATGGACA 59.226 47.619 0.00 0.00 43.62 4.02
459 491 2.376518 AGACCACAAACAGGATGGACAT 59.623 45.455 0.00 0.00 43.62 3.06
460 492 3.157087 GACCACAAACAGGATGGACATT 58.843 45.455 0.00 0.00 43.62 2.71
461 493 4.042809 AGACCACAAACAGGATGGACATTA 59.957 41.667 0.00 0.00 43.62 1.90
462 494 4.335416 ACCACAAACAGGATGGACATTAG 58.665 43.478 0.00 0.00 43.62 1.73
463 495 4.042809 ACCACAAACAGGATGGACATTAGA 59.957 41.667 0.00 0.00 43.62 2.10
464 496 5.195940 CCACAAACAGGATGGACATTAGAT 58.804 41.667 0.00 0.00 43.62 1.98
465 497 5.653769 CCACAAACAGGATGGACATTAGATT 59.346 40.000 0.00 0.00 43.62 2.40
466 498 6.828273 CCACAAACAGGATGGACATTAGATTA 59.172 38.462 0.00 0.00 43.62 1.75
467 499 7.012704 CCACAAACAGGATGGACATTAGATTAG 59.987 40.741 0.00 0.00 43.62 1.73
468 500 7.770433 CACAAACAGGATGGACATTAGATTAGA 59.230 37.037 0.00 0.00 43.62 2.10
469 501 8.497745 ACAAACAGGATGGACATTAGATTAGAT 58.502 33.333 0.00 0.00 43.62 1.98
470 502 8.781196 CAAACAGGATGGACATTAGATTAGATG 58.219 37.037 0.00 0.00 43.62 2.90
471 503 7.623999 ACAGGATGGACATTAGATTAGATGT 57.376 36.000 0.00 0.00 43.62 3.06
472 504 7.448420 ACAGGATGGACATTAGATTAGATGTG 58.552 38.462 0.00 0.00 43.62 3.21
473 505 7.290948 ACAGGATGGACATTAGATTAGATGTGA 59.709 37.037 0.00 0.00 43.62 3.58
474 506 7.601886 CAGGATGGACATTAGATTAGATGTGAC 59.398 40.741 0.00 0.00 36.67 3.67
475 507 7.290948 AGGATGGACATTAGATTAGATGTGACA 59.709 37.037 0.00 0.00 36.67 3.58
476 508 8.099537 GGATGGACATTAGATTAGATGTGACAT 58.900 37.037 0.00 0.00 36.67 3.06
479 511 9.764363 TGGACATTAGATTAGATGTGACATAAC 57.236 33.333 0.00 0.00 36.67 1.89
480 512 9.988815 GGACATTAGATTAGATGTGACATAACT 57.011 33.333 0.00 0.00 36.67 2.24
499 531 9.360901 ACATAACTATGTCTCATCTAGATGTGT 57.639 33.333 27.80 18.20 42.96 3.72
500 532 9.838975 CATAACTATGTCTCATCTAGATGTGTC 57.161 37.037 27.80 22.92 39.72 3.67
501 533 9.806448 ATAACTATGTCTCATCTAGATGTGTCT 57.194 33.333 27.80 17.24 39.72 3.41
502 534 8.532186 AACTATGTCTCATCTAGATGTGTCTT 57.468 34.615 27.80 21.87 39.72 3.01
503 535 9.634021 AACTATGTCTCATCTAGATGTGTCTTA 57.366 33.333 27.80 21.83 39.72 2.10
504 536 9.283768 ACTATGTCTCATCTAGATGTGTCTTAG 57.716 37.037 28.60 28.60 39.72 2.18
505 537 9.500785 CTATGTCTCATCTAGATGTGTCTTAGA 57.499 37.037 27.68 21.70 39.72 2.10
506 538 7.561021 TGTCTCATCTAGATGTGTCTTAGAC 57.439 40.000 27.35 27.35 39.72 2.59
507 539 7.112779 TGTCTCATCTAGATGTGTCTTAGACA 58.887 38.462 30.21 30.21 40.10 3.41
508 540 7.611855 TGTCTCATCTAGATGTGTCTTAGACAA 59.388 37.037 30.99 21.58 39.78 3.18
509 541 8.462811 GTCTCATCTAGATGTGTCTTAGACAAA 58.537 37.037 28.25 12.54 39.36 2.83
510 542 8.462811 TCTCATCTAGATGTGTCTTAGACAAAC 58.537 37.037 27.80 10.88 44.49 2.93
511 543 7.548097 TCATCTAGATGTGTCTTAGACAAACC 58.452 38.462 27.80 2.07 44.49 3.27
512 544 6.282199 TCTAGATGTGTCTTAGACAAACCC 57.718 41.667 17.25 7.55 44.49 4.11
526 558 8.879342 TTAGACAAACCCAACAATTAAACATG 57.121 30.769 0.00 0.00 0.00 3.21
586 623 3.181469 CGGGCAGTTTTAGCACCTAGATA 60.181 47.826 0.00 0.00 29.59 1.98
685 722 5.277297 GCATTATTGACACGCAGCTTGTATA 60.277 40.000 4.17 0.00 0.00 1.47
713 758 1.067084 ATCACTCGATGCAGAGGCG 59.933 57.895 7.77 1.84 45.35 5.52
735 780 4.408182 GAGGATCATTCCCTCTTTTCGA 57.592 45.455 0.00 0.00 45.18 3.71
773 819 5.534654 TGTAGCTTGTGCCATTTATATTCCC 59.465 40.000 0.00 0.00 40.80 3.97
852 898 4.034163 CGAAGATCACGAAGCTAGACAGTA 59.966 45.833 6.49 0.00 0.00 2.74
855 901 6.795098 AGATCACGAAGCTAGACAGTATAG 57.205 41.667 0.00 0.00 0.00 1.31
922 968 3.963428 AAACGAATCAGCTAGGTGAGT 57.037 42.857 27.04 25.36 0.00 3.41
942 988 1.974543 CTTTTGTGTGGATGGCCCC 59.025 57.895 0.00 0.00 0.00 5.80
944 990 3.877344 TTTGTGTGGATGGCCCCCG 62.877 63.158 0.00 0.00 0.00 5.73
981 1027 9.522804 GTCCTATAGCTAGCACATATATTTGTC 57.477 37.037 18.83 0.00 0.00 3.18
1068 1125 1.758514 CAAGCCTCCTCTCCCGCTA 60.759 63.158 0.00 0.00 0.00 4.26
1149 1206 0.030297 AGGTCAGGCATCTCCTCCAT 60.030 55.000 0.00 0.00 45.52 3.41
1157 1214 0.883814 CATCTCCTCCATGCCTTCGC 60.884 60.000 0.00 0.00 0.00 4.70
1423 1480 1.915266 CCCACTGAGACTGAGGCCA 60.915 63.158 5.01 0.00 0.00 5.36
1452 1512 0.106519 TGGCCTACTACTACGACCCC 60.107 60.000 3.32 0.00 0.00 4.95
1722 1785 8.350722 GGTCATGATTTCGATTACTAGTACTCA 58.649 37.037 17.51 3.06 0.00 3.41
1769 1832 5.606348 AGGGTTGCTCTCTTGATAAGTAG 57.394 43.478 0.00 0.00 0.00 2.57
1807 1870 3.266510 TCAGTGCTTATGGATGTCACC 57.733 47.619 0.00 0.00 0.00 4.02
1832 1900 7.385752 CCGAGTCCTTATCTCTAGTAGTAAGTG 59.614 44.444 0.00 0.00 0.00 3.16
1833 1901 7.095523 CGAGTCCTTATCTCTAGTAGTAAGTGC 60.096 44.444 0.00 0.00 0.00 4.40
1834 1902 7.575505 AGTCCTTATCTCTAGTAGTAAGTGCA 58.424 38.462 0.00 0.00 0.00 4.57
1835 1903 8.221944 AGTCCTTATCTCTAGTAGTAAGTGCAT 58.778 37.037 0.00 0.00 0.00 3.96
1836 1904 9.504708 GTCCTTATCTCTAGTAGTAAGTGCATA 57.495 37.037 0.00 0.00 0.00 3.14
1957 2025 7.489435 TGCAATCTTTTCAACGTTTCAACATTA 59.511 29.630 0.00 0.00 0.00 1.90
1990 2063 9.697990 ATAATCCTACAGTACTACCTATTAGGC 57.302 37.037 9.77 0.00 39.63 3.93
1991 2064 6.776887 TCCTACAGTACTACCTATTAGGCT 57.223 41.667 9.77 0.00 39.63 4.58
1992 2065 6.540995 TCCTACAGTACTACCTATTAGGCTG 58.459 44.000 9.77 10.44 39.63 4.85
1993 2066 5.711036 CCTACAGTACTACCTATTAGGCTGG 59.289 48.000 9.77 3.10 39.63 4.85
1994 2067 3.896272 ACAGTACTACCTATTAGGCTGGC 59.104 47.826 9.77 0.00 39.63 4.85
1995 2068 3.258622 CAGTACTACCTATTAGGCTGGCC 59.741 52.174 9.77 3.00 39.63 5.36
1996 2069 2.489528 ACTACCTATTAGGCTGGCCA 57.510 50.000 14.39 4.71 39.63 5.36
1997 2070 2.991580 ACTACCTATTAGGCTGGCCAT 58.008 47.619 5.51 0.00 39.63 4.40
1998 2071 4.141990 ACTACCTATTAGGCTGGCCATA 57.858 45.455 5.51 0.00 39.63 2.74
1999 2072 4.499472 ACTACCTATTAGGCTGGCCATAA 58.501 43.478 5.51 2.06 39.63 1.90
2000 2073 3.790089 ACCTATTAGGCTGGCCATAAC 57.210 47.619 5.51 0.00 39.63 1.89
2001 2074 2.038557 ACCTATTAGGCTGGCCATAACG 59.961 50.000 5.51 0.00 39.63 3.18
2002 2075 2.615493 CCTATTAGGCTGGCCATAACGG 60.615 54.545 5.51 3.23 38.92 4.44
2003 2076 0.110486 ATTAGGCTGGCCATAACGGG 59.890 55.000 5.51 0.00 38.92 5.28
2004 2077 1.990160 TTAGGCTGGCCATAACGGGG 61.990 60.000 5.51 0.00 38.92 5.73
2005 2078 4.123545 GGCTGGCCATAACGGGGT 62.124 66.667 5.51 0.00 35.81 4.95
2006 2079 2.748513 GGCTGGCCATAACGGGGTA 61.749 63.158 5.51 0.00 35.81 3.69
2007 2080 1.225148 GCTGGCCATAACGGGGTAA 59.775 57.895 5.51 0.00 34.06 2.85
2008 2081 1.099295 GCTGGCCATAACGGGGTAAC 61.099 60.000 5.51 0.00 34.06 2.50
2009 2082 0.253610 CTGGCCATAACGGGGTAACA 59.746 55.000 5.51 0.00 39.74 2.41
2010 2083 0.920438 TGGCCATAACGGGGTAACAT 59.080 50.000 0.00 0.00 39.74 2.71
2011 2084 1.285373 TGGCCATAACGGGGTAACATT 59.715 47.619 0.00 0.00 39.74 2.71
2012 2085 2.508716 TGGCCATAACGGGGTAACATTA 59.491 45.455 0.00 0.00 39.74 1.90
2013 2086 2.880268 GGCCATAACGGGGTAACATTAC 59.120 50.000 0.00 0.00 39.74 1.89
2014 2087 3.434024 GGCCATAACGGGGTAACATTACT 60.434 47.826 0.00 0.00 39.74 2.24
2015 2088 4.202346 GGCCATAACGGGGTAACATTACTA 60.202 45.833 0.00 0.00 39.74 1.82
2016 2089 4.992951 GCCATAACGGGGTAACATTACTAG 59.007 45.833 2.00 0.00 39.74 2.57
2017 2090 5.453762 GCCATAACGGGGTAACATTACTAGT 60.454 44.000 0.00 0.00 39.74 2.57
2018 2091 6.239289 GCCATAACGGGGTAACATTACTAGTA 60.239 42.308 0.00 0.00 39.74 1.82
2019 2092 7.526025 GCCATAACGGGGTAACATTACTAGTAT 60.526 40.741 2.79 0.00 39.74 2.12
2020 2093 8.031277 CCATAACGGGGTAACATTACTAGTATC 58.969 40.741 2.79 0.00 39.74 2.24
2021 2094 8.579006 CATAACGGGGTAACATTACTAGTATCA 58.421 37.037 2.79 0.00 39.74 2.15
2022 2095 7.607615 AACGGGGTAACATTACTAGTATCAT 57.392 36.000 2.79 0.00 39.74 2.45
2023 2096 8.710749 AACGGGGTAACATTACTAGTATCATA 57.289 34.615 2.79 0.00 39.74 2.15
2024 2097 8.890410 ACGGGGTAACATTACTAGTATCATAT 57.110 34.615 2.79 0.00 39.74 1.78
2025 2098 9.979897 ACGGGGTAACATTACTAGTATCATATA 57.020 33.333 2.79 0.00 39.74 0.86
2037 2110 8.638629 ACTAGTATCATATACTTGGGACTCAC 57.361 38.462 4.99 0.00 0.00 3.51
2038 2111 8.225416 ACTAGTATCATATACTTGGGACTCACA 58.775 37.037 4.99 0.00 0.00 3.58
2039 2112 7.914427 AGTATCATATACTTGGGACTCACAA 57.086 36.000 0.00 0.00 0.00 3.33
2040 2113 8.319057 AGTATCATATACTTGGGACTCACAAA 57.681 34.615 0.00 0.00 0.00 2.83
2041 2114 8.204836 AGTATCATATACTTGGGACTCACAAAC 58.795 37.037 0.00 0.00 0.00 2.93
2042 2115 6.367374 TCATATACTTGGGACTCACAAACA 57.633 37.500 0.00 0.00 0.00 2.83
2043 2116 6.957631 TCATATACTTGGGACTCACAAACAT 58.042 36.000 0.00 0.00 0.00 2.71
2044 2117 6.823182 TCATATACTTGGGACTCACAAACATG 59.177 38.462 0.00 0.00 0.00 3.21
2045 2118 1.956477 ACTTGGGACTCACAAACATGC 59.044 47.619 0.00 0.00 0.00 4.06
2046 2119 2.233271 CTTGGGACTCACAAACATGCT 58.767 47.619 0.00 0.00 0.00 3.79
2047 2120 2.363306 TGGGACTCACAAACATGCTT 57.637 45.000 0.00 0.00 0.00 3.91
2048 2121 3.500448 TGGGACTCACAAACATGCTTA 57.500 42.857 0.00 0.00 0.00 3.09
2049 2122 4.032960 TGGGACTCACAAACATGCTTAT 57.967 40.909 0.00 0.00 0.00 1.73
2050 2123 3.758023 TGGGACTCACAAACATGCTTATG 59.242 43.478 0.00 0.00 0.00 1.90
2051 2124 3.758554 GGGACTCACAAACATGCTTATGT 59.241 43.478 0.00 0.00 36.10 2.29
2052 2125 4.379813 GGGACTCACAAACATGCTTATGTG 60.380 45.833 12.13 12.13 43.42 3.21
2054 2127 5.362556 ACTCACAAACATGCTTATGTGAC 57.637 39.130 15.35 0.00 45.14 3.67
2055 2128 4.821260 ACTCACAAACATGCTTATGTGACA 59.179 37.500 15.35 0.00 45.14 3.58
2056 2129 5.049198 ACTCACAAACATGCTTATGTGACAG 60.049 40.000 15.35 11.25 45.14 3.51
2057 2130 5.062528 TCACAAACATGCTTATGTGACAGA 58.937 37.500 15.35 0.00 45.14 3.41
2058 2131 5.049474 TCACAAACATGCTTATGTGACAGAC 60.049 40.000 15.35 0.00 45.14 3.51
2059 2132 4.821260 ACAAACATGCTTATGTGACAGACA 59.179 37.500 0.00 0.00 39.53 3.41
2060 2133 5.299028 ACAAACATGCTTATGTGACAGACAA 59.701 36.000 0.00 0.00 38.36 3.18
2061 2134 6.016024 ACAAACATGCTTATGTGACAGACAAT 60.016 34.615 0.00 0.00 38.36 2.71
2062 2135 6.579666 AACATGCTTATGTGACAGACAATT 57.420 33.333 0.00 0.00 38.36 2.32
2063 2136 7.686438 AACATGCTTATGTGACAGACAATTA 57.314 32.000 0.00 0.00 38.36 1.40
2064 2137 7.686438 ACATGCTTATGTGACAGACAATTAA 57.314 32.000 0.00 0.00 38.36 1.40
2065 2138 8.109705 ACATGCTTATGTGACAGACAATTAAA 57.890 30.769 0.00 0.00 38.36 1.52
2066 2139 8.239314 ACATGCTTATGTGACAGACAATTAAAG 58.761 33.333 0.00 0.00 38.36 1.85
2067 2140 7.977789 TGCTTATGTGACAGACAATTAAAGA 57.022 32.000 0.00 0.00 38.36 2.52
2068 2141 8.389779 TGCTTATGTGACAGACAATTAAAGAA 57.610 30.769 0.00 0.00 38.36 2.52
2069 2142 8.506437 TGCTTATGTGACAGACAATTAAAGAAG 58.494 33.333 0.00 0.00 38.36 2.85
2070 2143 8.721478 GCTTATGTGACAGACAATTAAAGAAGA 58.279 33.333 0.00 0.00 38.36 2.87
2074 2147 8.731275 TGTGACAGACAATTAAAGAAGAAAGA 57.269 30.769 0.00 0.00 0.00 2.52
2075 2148 8.830580 TGTGACAGACAATTAAAGAAGAAAGAG 58.169 33.333 0.00 0.00 0.00 2.85
2076 2149 9.046296 GTGACAGACAATTAAAGAAGAAAGAGA 57.954 33.333 0.00 0.00 0.00 3.10
2077 2150 9.265901 TGACAGACAATTAAAGAAGAAAGAGAG 57.734 33.333 0.00 0.00 0.00 3.20
2078 2151 8.614469 ACAGACAATTAAAGAAGAAAGAGAGG 57.386 34.615 0.00 0.00 0.00 3.69
2079 2152 8.432805 ACAGACAATTAAAGAAGAAAGAGAGGA 58.567 33.333 0.00 0.00 0.00 3.71
2080 2153 9.447157 CAGACAATTAAAGAAGAAAGAGAGGAT 57.553 33.333 0.00 0.00 0.00 3.24
2081 2154 9.665719 AGACAATTAAAGAAGAAAGAGAGGATC 57.334 33.333 0.00 0.00 0.00 3.36
2082 2155 9.442047 GACAATTAAAGAAGAAAGAGAGGATCA 57.558 33.333 0.00 0.00 37.82 2.92
2083 2156 9.972106 ACAATTAAAGAAGAAAGAGAGGATCAT 57.028 29.630 0.00 0.00 37.82 2.45
2090 2163 8.830915 AGAAGAAAGAGAGGATCATAGTAACA 57.169 34.615 0.00 0.00 37.82 2.41
2091 2164 9.432982 AGAAGAAAGAGAGGATCATAGTAACAT 57.567 33.333 0.00 0.00 37.82 2.71
2094 2167 9.308000 AGAAAGAGAGGATCATAGTAACATAGG 57.692 37.037 0.00 0.00 37.82 2.57
2095 2168 9.084533 GAAAGAGAGGATCATAGTAACATAGGT 57.915 37.037 0.00 0.00 37.82 3.08
2097 2170 9.747898 AAGAGAGGATCATAGTAACATAGGTAG 57.252 37.037 0.00 0.00 37.82 3.18
2098 2171 9.118367 AGAGAGGATCATAGTAACATAGGTAGA 57.882 37.037 0.00 0.00 37.82 2.59
2099 2172 9.914834 GAGAGGATCATAGTAACATAGGTAGAT 57.085 37.037 0.00 0.00 37.82 1.98
2102 2175 9.924010 AGGATCATAGTAACATAGGTAGATACC 57.076 37.037 0.43 0.43 46.82 2.73
2139 2212 9.830975 AAATGTTATACTACTATGTGTCATGCA 57.169 29.630 0.00 0.00 0.00 3.96
2141 2214 8.816640 TGTTATACTACTATGTGTCATGCATG 57.183 34.615 21.07 21.07 0.00 4.06
2142 2215 8.637986 TGTTATACTACTATGTGTCATGCATGA 58.362 33.333 25.42 25.42 0.00 3.07
2155 2228 5.190992 TCATGCATGACAATAAATGAGGC 57.809 39.130 25.42 0.00 0.00 4.70
2156 2229 4.038282 TCATGCATGACAATAAATGAGGCC 59.962 41.667 25.42 0.00 0.00 5.19
2157 2230 3.363627 TGCATGACAATAAATGAGGCCA 58.636 40.909 5.01 0.00 0.00 5.36
2158 2231 3.962063 TGCATGACAATAAATGAGGCCAT 59.038 39.130 5.01 0.00 33.66 4.40
2159 2232 5.139001 TGCATGACAATAAATGAGGCCATA 58.861 37.500 5.01 0.00 31.59 2.74
2160 2233 5.776208 TGCATGACAATAAATGAGGCCATAT 59.224 36.000 5.01 0.00 31.59 1.78
2161 2234 6.947158 TGCATGACAATAAATGAGGCCATATA 59.053 34.615 5.01 0.00 31.59 0.86
2162 2235 7.616542 TGCATGACAATAAATGAGGCCATATAT 59.383 33.333 5.01 0.00 31.59 0.86
2163 2236 9.123902 GCATGACAATAAATGAGGCCATATATA 57.876 33.333 5.01 0.00 31.59 0.86
2172 2245 8.644432 AAATGAGGCCATATATAATACTCCCT 57.356 34.615 5.01 0.00 31.59 4.20
2173 2246 7.863901 ATGAGGCCATATATAATACTCCCTC 57.136 40.000 5.01 0.00 37.45 4.30
2174 2247 6.998112 TGAGGCCATATATAATACTCCCTCT 58.002 40.000 5.01 0.00 37.73 3.69
2175 2248 6.841229 TGAGGCCATATATAATACTCCCTCTG 59.159 42.308 5.01 0.00 37.73 3.35
2176 2249 6.757317 AGGCCATATATAATACTCCCTCTGT 58.243 40.000 5.01 0.00 0.00 3.41
2177 2250 6.841755 AGGCCATATATAATACTCCCTCTGTC 59.158 42.308 5.01 0.00 0.00 3.51
2178 2251 6.042208 GGCCATATATAATACTCCCTCTGTCC 59.958 46.154 0.00 0.00 0.00 4.02
2179 2252 6.042208 GCCATATATAATACTCCCTCTGTCCC 59.958 46.154 0.00 0.00 0.00 4.46
2180 2253 6.265649 CCATATATAATACTCCCTCTGTCCCG 59.734 46.154 0.00 0.00 0.00 5.14
2181 2254 3.614568 ATAATACTCCCTCTGTCCCGT 57.385 47.619 0.00 0.00 0.00 5.28
2182 2255 4.736611 ATAATACTCCCTCTGTCCCGTA 57.263 45.455 0.00 0.00 0.00 4.02
2183 2256 3.393426 AATACTCCCTCTGTCCCGTAA 57.607 47.619 0.00 0.00 0.00 3.18
2184 2257 3.614568 ATACTCCCTCTGTCCCGTAAT 57.385 47.619 0.00 0.00 0.00 1.89
2185 2258 1.486211 ACTCCCTCTGTCCCGTAATG 58.514 55.000 0.00 0.00 0.00 1.90
2186 2259 1.273098 ACTCCCTCTGTCCCGTAATGT 60.273 52.381 0.00 0.00 0.00 2.71
2187 2260 2.024655 ACTCCCTCTGTCCCGTAATGTA 60.025 50.000 0.00 0.00 0.00 2.29
2188 2261 3.028850 CTCCCTCTGTCCCGTAATGTAA 58.971 50.000 0.00 0.00 0.00 2.41
2189 2262 3.028850 TCCCTCTGTCCCGTAATGTAAG 58.971 50.000 0.00 0.00 0.00 2.34
2190 2263 3.028850 CCCTCTGTCCCGTAATGTAAGA 58.971 50.000 0.00 0.00 0.00 2.10
2191 2264 3.181478 CCCTCTGTCCCGTAATGTAAGAC 60.181 52.174 0.00 0.00 0.00 3.01
2192 2265 3.181478 CCTCTGTCCCGTAATGTAAGACC 60.181 52.174 0.00 0.00 0.00 3.85
2193 2266 3.700038 CTCTGTCCCGTAATGTAAGACCT 59.300 47.826 0.00 0.00 0.00 3.85
2194 2267 4.091549 TCTGTCCCGTAATGTAAGACCTT 58.908 43.478 0.00 0.00 0.00 3.50
2195 2268 4.529377 TCTGTCCCGTAATGTAAGACCTTT 59.471 41.667 0.00 0.00 0.00 3.11
2196 2269 5.012354 TCTGTCCCGTAATGTAAGACCTTTT 59.988 40.000 0.00 0.00 0.00 2.27
2197 2270 5.623169 TGTCCCGTAATGTAAGACCTTTTT 58.377 37.500 0.00 0.00 0.00 1.94
2242 2315 8.786826 AAAAACGTCTTACATTATGAGATGGA 57.213 30.769 0.00 0.00 34.85 3.41
2243 2316 8.425577 AAAACGTCTTACATTATGAGATGGAG 57.574 34.615 0.00 0.00 34.85 3.86
2244 2317 6.090483 ACGTCTTACATTATGAGATGGAGG 57.910 41.667 0.00 0.00 34.85 4.30
2245 2318 5.011125 ACGTCTTACATTATGAGATGGAGGG 59.989 44.000 0.00 0.00 34.85 4.30
2246 2319 5.243954 CGTCTTACATTATGAGATGGAGGGA 59.756 44.000 0.00 0.00 0.00 4.20
2247 2320 6.571344 CGTCTTACATTATGAGATGGAGGGAG 60.571 46.154 0.00 0.00 0.00 4.30
2248 2321 6.268847 GTCTTACATTATGAGATGGAGGGAGT 59.731 42.308 0.00 0.00 0.00 3.85
2249 2322 7.451877 GTCTTACATTATGAGATGGAGGGAGTA 59.548 40.741 0.00 0.00 0.00 2.59
2250 2323 7.451877 TCTTACATTATGAGATGGAGGGAGTAC 59.548 40.741 0.00 0.00 0.00 2.73
2251 2324 5.721225 ACATTATGAGATGGAGGGAGTACT 58.279 41.667 0.00 0.00 0.00 2.73
2252 2325 6.864421 ACATTATGAGATGGAGGGAGTACTA 58.136 40.000 0.00 0.00 0.00 1.82
2253 2326 6.722129 ACATTATGAGATGGAGGGAGTACTAC 59.278 42.308 0.00 0.00 0.00 2.73
2254 2327 6.532119 TTATGAGATGGAGGGAGTACTACT 57.468 41.667 4.77 1.85 0.00 2.57
2255 2328 4.883021 TGAGATGGAGGGAGTACTACTT 57.117 45.455 4.77 0.00 0.00 2.24
2256 2329 5.208294 TGAGATGGAGGGAGTACTACTTT 57.792 43.478 4.77 0.00 0.00 2.66
2257 2330 6.337185 TGAGATGGAGGGAGTACTACTTTA 57.663 41.667 4.77 0.00 0.00 1.85
2258 2331 6.923670 TGAGATGGAGGGAGTACTACTTTAT 58.076 40.000 4.77 0.00 0.00 1.40
2259 2332 6.778069 TGAGATGGAGGGAGTACTACTTTATG 59.222 42.308 4.77 0.00 0.00 1.90
2260 2333 6.923670 AGATGGAGGGAGTACTACTTTATGA 58.076 40.000 4.77 0.00 0.00 2.15
2261 2334 7.540183 AGATGGAGGGAGTACTACTTTATGAT 58.460 38.462 4.77 0.00 0.00 2.45
2262 2335 8.679725 AGATGGAGGGAGTACTACTTTATGATA 58.320 37.037 4.77 0.00 0.00 2.15
2263 2336 8.653036 ATGGAGGGAGTACTACTTTATGATAC 57.347 38.462 4.77 0.00 0.00 2.24
2264 2337 6.713903 TGGAGGGAGTACTACTTTATGATACG 59.286 42.308 4.77 0.00 0.00 3.06
2265 2338 6.939163 GGAGGGAGTACTACTTTATGATACGA 59.061 42.308 4.77 0.00 0.00 3.43
2266 2339 7.611079 GGAGGGAGTACTACTTTATGATACGAT 59.389 40.741 4.77 0.00 0.00 3.73
2267 2340 8.338072 AGGGAGTACTACTTTATGATACGATG 57.662 38.462 4.77 0.00 0.00 3.84
2268 2341 7.028361 GGGAGTACTACTTTATGATACGATGC 58.972 42.308 4.77 0.00 0.00 3.91
2269 2342 7.309012 GGGAGTACTACTTTATGATACGATGCA 60.309 40.741 4.77 0.00 0.00 3.96
2270 2343 7.537991 GGAGTACTACTTTATGATACGATGCAC 59.462 40.741 0.00 0.00 0.00 4.57
2271 2344 8.167605 AGTACTACTTTATGATACGATGCACT 57.832 34.615 0.00 0.00 0.00 4.40
2272 2345 9.281371 AGTACTACTTTATGATACGATGCACTA 57.719 33.333 0.00 0.00 0.00 2.74
2274 2347 8.972262 ACTACTTTATGATACGATGCACTATG 57.028 34.615 0.00 0.00 0.00 2.23
2275 2348 8.029522 ACTACTTTATGATACGATGCACTATGG 58.970 37.037 0.00 0.00 0.00 2.74
2276 2349 5.639506 ACTTTATGATACGATGCACTATGGC 59.360 40.000 0.00 0.00 0.00 4.40
2277 2350 3.969287 ATGATACGATGCACTATGGCT 57.031 42.857 0.00 0.00 34.04 4.75
2278 2351 3.030668 TGATACGATGCACTATGGCTG 57.969 47.619 0.00 0.00 34.04 4.85
2279 2352 2.365293 TGATACGATGCACTATGGCTGT 59.635 45.455 0.00 0.00 34.04 4.40
2280 2353 3.572255 TGATACGATGCACTATGGCTGTA 59.428 43.478 0.00 0.00 34.04 2.74
2281 2354 2.515926 ACGATGCACTATGGCTGTAG 57.484 50.000 0.00 0.00 34.04 2.74
2282 2355 1.757118 ACGATGCACTATGGCTGTAGT 59.243 47.619 0.00 0.00 35.34 2.73
2283 2356 2.956333 ACGATGCACTATGGCTGTAGTA 59.044 45.455 0.00 0.00 33.29 1.82
2284 2357 3.574396 ACGATGCACTATGGCTGTAGTAT 59.426 43.478 0.00 0.00 33.29 2.12
2285 2358 4.169508 CGATGCACTATGGCTGTAGTATC 58.830 47.826 0.00 4.12 33.29 2.24
2286 2359 4.321230 CGATGCACTATGGCTGTAGTATCA 60.321 45.833 0.00 5.50 33.29 2.15
2287 2360 5.623141 CGATGCACTATGGCTGTAGTATCAT 60.623 44.000 0.00 12.53 33.29 2.45
2288 2361 6.404734 CGATGCACTATGGCTGTAGTATCATA 60.405 42.308 0.00 0.00 33.29 2.15
2289 2362 6.025749 TGCACTATGGCTGTAGTATCATAC 57.974 41.667 3.44 0.00 33.29 2.39
2290 2363 5.538433 TGCACTATGGCTGTAGTATCATACA 59.462 40.000 0.00 0.00 33.29 2.29
2291 2364 5.864474 GCACTATGGCTGTAGTATCATACAC 59.136 44.000 0.00 0.00 33.29 2.90
2292 2365 6.294787 GCACTATGGCTGTAGTATCATACACT 60.295 42.308 0.00 0.00 33.29 3.55
2293 2366 7.094334 GCACTATGGCTGTAGTATCATACACTA 60.094 40.741 0.00 0.00 33.29 2.74
2294 2367 8.454894 CACTATGGCTGTAGTATCATACACTAG 58.545 40.741 0.00 0.00 33.29 2.57
2295 2368 8.164733 ACTATGGCTGTAGTATCATACACTAGT 58.835 37.037 0.00 0.00 33.29 2.57
2296 2369 9.668497 CTATGGCTGTAGTATCATACACTAGTA 57.332 37.037 0.00 0.00 32.36 1.82
2298 2371 8.563123 TGGCTGTAGTATCATACACTAGTATC 57.437 38.462 0.00 0.00 38.88 2.24
2299 2372 8.161425 TGGCTGTAGTATCATACACTAGTATCA 58.839 37.037 0.00 0.00 38.88 2.15
2300 2373 9.179909 GGCTGTAGTATCATACACTAGTATCAT 57.820 37.037 0.00 0.00 38.88 2.45
2338 2411 8.638629 AGTATATGTTACTCTCCACTATGACC 57.361 38.462 0.00 0.00 0.00 4.02
2339 2412 8.225416 AGTATATGTTACTCTCCACTATGACCA 58.775 37.037 0.00 0.00 0.00 4.02
2340 2413 5.860941 ATGTTACTCTCCACTATGACCAG 57.139 43.478 0.00 0.00 0.00 4.00
2341 2414 3.447586 TGTTACTCTCCACTATGACCAGC 59.552 47.826 0.00 0.00 0.00 4.85
2342 2415 1.490574 ACTCTCCACTATGACCAGCC 58.509 55.000 0.00 0.00 0.00 4.85
2346 2419 3.031736 TCTCCACTATGACCAGCCTTAC 58.968 50.000 0.00 0.00 0.00 2.34
2366 2439 2.224967 ACTCCTGCTTTCAGATTTGGCT 60.225 45.455 0.00 0.00 42.95 4.75
2398 2472 1.153549 GTGTGGCCTCGGAGACATC 60.154 63.158 6.58 1.98 0.00 3.06
2409 2483 2.961526 GGAGACATCCTGCGTCTTAA 57.038 50.000 0.00 0.00 43.72 1.85
2600 2707 1.626321 TCCTGTCTTGGCGTCCATAAA 59.374 47.619 0.00 0.00 31.53 1.40
2626 2733 9.636789 ATCATCAAGAAAATTGATCAGGTGATA 57.363 29.630 0.00 0.00 37.06 2.15
2726 2834 0.036732 GTGTGCCATCCCAGTTCAGA 59.963 55.000 0.00 0.00 0.00 3.27
2819 2933 4.095185 AGCTAGCTACTCTGTAGTTTCACG 59.905 45.833 17.69 0.00 37.15 4.35
2868 2982 1.664588 GCGGTAGATCTCACATCGCTC 60.665 57.143 13.18 0.00 38.82 5.03
2883 2997 6.644181 TCACATCGCTCATATTTTCTGAGATC 59.356 38.462 4.57 0.00 42.22 2.75
2887 3001 4.747108 CGCTCATATTTTCTGAGATCCGTT 59.253 41.667 4.57 0.00 42.22 4.44
2899 3013 1.486310 AGATCCGTTTGAGCTATGGCA 59.514 47.619 3.10 0.00 38.14 4.92
2922 3036 6.260377 CACACCTAGATGTATTGTGCATTTG 58.740 40.000 0.00 0.00 31.84 2.32
2924 3038 6.830324 ACACCTAGATGTATTGTGCATTTGAT 59.170 34.615 0.00 0.00 0.00 2.57
2945 3059 4.903638 TCTTTTACGCATTTCAGAGTCG 57.096 40.909 0.00 0.00 0.00 4.18
2959 3073 1.078759 GAGTCGAATCACTGTGCGGG 61.079 60.000 8.21 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.882000 TGTCCAACAGATCCATGATTAGTTG 59.118 40.000 0.00 12.05 37.12 3.16
1 2 6.065976 TGTCCAACAGATCCATGATTAGTT 57.934 37.500 0.00 0.00 0.00 2.24
2 3 5.698741 TGTCCAACAGATCCATGATTAGT 57.301 39.130 0.00 0.00 0.00 2.24
3 4 5.472478 CCATGTCCAACAGATCCATGATTAG 59.528 44.000 0.00 0.00 33.01 1.73
4 5 5.103982 ACCATGTCCAACAGATCCATGATTA 60.104 40.000 0.00 0.00 33.01 1.75
5 6 4.212716 CCATGTCCAACAGATCCATGATT 58.787 43.478 0.00 0.00 33.01 2.57
9 10 2.577563 TCACCATGTCCAACAGATCCAT 59.422 45.455 0.00 0.00 0.00 3.41
214 217 1.548269 CCCACTCTCACTCAGTCTTCC 59.452 57.143 0.00 0.00 0.00 3.46
217 220 2.685106 TTCCCACTCTCACTCAGTCT 57.315 50.000 0.00 0.00 0.00 3.24
225 228 3.510459 TCTGTCATCTTTCCCACTCTCA 58.490 45.455 0.00 0.00 0.00 3.27
294 326 7.623268 AATTTTGTGCTACTTCGATTTCAAC 57.377 32.000 0.00 0.00 0.00 3.18
359 391 5.951747 AGCTTAGATGTGGCATCCTTAAAAA 59.048 36.000 5.59 0.00 0.00 1.94
360 392 5.509498 AGCTTAGATGTGGCATCCTTAAAA 58.491 37.500 5.59 0.00 0.00 1.52
361 393 5.116084 AGCTTAGATGTGGCATCCTTAAA 57.884 39.130 5.59 0.00 0.00 1.52
362 394 4.444876 GGAGCTTAGATGTGGCATCCTTAA 60.445 45.833 5.59 0.00 0.00 1.85
363 395 3.071602 GGAGCTTAGATGTGGCATCCTTA 59.928 47.826 5.59 0.00 0.00 2.69
364 396 2.158696 GGAGCTTAGATGTGGCATCCTT 60.159 50.000 5.59 0.00 0.00 3.36
365 397 1.419387 GGAGCTTAGATGTGGCATCCT 59.581 52.381 5.59 0.00 0.00 3.24
366 398 1.544314 GGGAGCTTAGATGTGGCATCC 60.544 57.143 5.59 0.00 0.00 3.51
367 399 1.141657 TGGGAGCTTAGATGTGGCATC 59.858 52.381 0.00 1.18 0.00 3.91
368 400 1.133976 GTGGGAGCTTAGATGTGGCAT 60.134 52.381 0.00 0.00 0.00 4.40
369 401 0.253044 GTGGGAGCTTAGATGTGGCA 59.747 55.000 0.00 0.00 0.00 4.92
370 402 0.253044 TGTGGGAGCTTAGATGTGGC 59.747 55.000 0.00 0.00 0.00 5.01
371 403 3.134623 TGTATGTGGGAGCTTAGATGTGG 59.865 47.826 0.00 0.00 0.00 4.17
372 404 4.406648 TGTATGTGGGAGCTTAGATGTG 57.593 45.455 0.00 0.00 0.00 3.21
373 405 6.942163 ATATGTATGTGGGAGCTTAGATGT 57.058 37.500 0.00 0.00 0.00 3.06
374 406 9.322773 CATTATATGTATGTGGGAGCTTAGATG 57.677 37.037 0.00 0.00 0.00 2.90
375 407 7.989741 GCATTATATGTATGTGGGAGCTTAGAT 59.010 37.037 0.00 0.00 0.00 1.98
376 408 7.038373 TGCATTATATGTATGTGGGAGCTTAGA 60.038 37.037 0.00 0.00 0.00 2.10
377 409 7.105588 TGCATTATATGTATGTGGGAGCTTAG 58.894 38.462 0.00 0.00 0.00 2.18
378 410 7.014988 TGCATTATATGTATGTGGGAGCTTA 57.985 36.000 0.00 0.00 0.00 3.09
379 411 5.879763 TGCATTATATGTATGTGGGAGCTT 58.120 37.500 0.00 0.00 0.00 3.74
380 412 5.503634 TGCATTATATGTATGTGGGAGCT 57.496 39.130 0.00 0.00 0.00 4.09
381 413 5.473162 TGTTGCATTATATGTATGTGGGAGC 59.527 40.000 0.00 0.00 0.00 4.70
382 414 7.013178 TGTTGTTGCATTATATGTATGTGGGAG 59.987 37.037 0.00 0.00 0.00 4.30
383 415 6.830838 TGTTGTTGCATTATATGTATGTGGGA 59.169 34.615 0.00 0.00 0.00 4.37
384 416 7.036996 TGTTGTTGCATTATATGTATGTGGG 57.963 36.000 0.00 0.00 0.00 4.61
385 417 8.404765 TCTTGTTGTTGCATTATATGTATGTGG 58.595 33.333 0.00 0.00 0.00 4.17
386 418 9.786105 TTCTTGTTGTTGCATTATATGTATGTG 57.214 29.630 0.00 0.00 0.00 3.21
391 423 9.539825 TTTGTTTCTTGTTGTTGCATTATATGT 57.460 25.926 0.00 0.00 0.00 2.29
432 464 6.015434 GTCCATCCTGTTTGTGGTCTATTTTT 60.015 38.462 0.00 0.00 34.61 1.94
433 465 5.476945 GTCCATCCTGTTTGTGGTCTATTTT 59.523 40.000 0.00 0.00 34.61 1.82
434 466 5.010282 GTCCATCCTGTTTGTGGTCTATTT 58.990 41.667 0.00 0.00 34.61 1.40
435 467 4.042809 TGTCCATCCTGTTTGTGGTCTATT 59.957 41.667 0.00 0.00 34.61 1.73
436 468 3.587061 TGTCCATCCTGTTTGTGGTCTAT 59.413 43.478 0.00 0.00 34.61 1.98
437 469 2.976185 TGTCCATCCTGTTTGTGGTCTA 59.024 45.455 0.00 0.00 34.61 2.59
438 470 1.774254 TGTCCATCCTGTTTGTGGTCT 59.226 47.619 0.00 0.00 34.61 3.85
439 471 2.270352 TGTCCATCCTGTTTGTGGTC 57.730 50.000 0.00 0.00 34.61 4.02
440 472 2.978156 ATGTCCATCCTGTTTGTGGT 57.022 45.000 0.00 0.00 34.61 4.16
441 473 4.588899 TCTAATGTCCATCCTGTTTGTGG 58.411 43.478 0.00 0.00 0.00 4.17
442 474 6.764308 AATCTAATGTCCATCCTGTTTGTG 57.236 37.500 0.00 0.00 0.00 3.33
443 475 7.861629 TCTAATCTAATGTCCATCCTGTTTGT 58.138 34.615 0.00 0.00 0.00 2.83
444 476 8.781196 CATCTAATCTAATGTCCATCCTGTTTG 58.219 37.037 0.00 0.00 0.00 2.93
445 477 8.497745 ACATCTAATCTAATGTCCATCCTGTTT 58.502 33.333 0.00 0.00 30.35 2.83
446 478 7.935755 CACATCTAATCTAATGTCCATCCTGTT 59.064 37.037 0.00 0.00 33.92 3.16
447 479 7.290948 TCACATCTAATCTAATGTCCATCCTGT 59.709 37.037 0.00 0.00 33.92 4.00
448 480 7.601886 GTCACATCTAATCTAATGTCCATCCTG 59.398 40.741 0.00 0.00 33.92 3.86
449 481 7.290948 TGTCACATCTAATCTAATGTCCATCCT 59.709 37.037 0.00 0.00 33.92 3.24
450 482 7.445121 TGTCACATCTAATCTAATGTCCATCC 58.555 38.462 0.00 0.00 33.92 3.51
453 485 9.764363 GTTATGTCACATCTAATCTAATGTCCA 57.236 33.333 0.00 0.00 33.92 4.02
454 486 9.988815 AGTTATGTCACATCTAATCTAATGTCC 57.011 33.333 0.00 0.00 33.92 4.02
473 505 9.360901 ACACATCTAGATGAGACATAGTTATGT 57.639 33.333 34.16 21.01 43.89 2.29
474 506 9.838975 GACACATCTAGATGAGACATAGTTATG 57.161 37.037 34.16 20.45 41.20 1.90
475 507 9.806448 AGACACATCTAGATGAGACATAGTTAT 57.194 33.333 34.16 10.98 41.20 1.89
476 508 9.634021 AAGACACATCTAGATGAGACATAGTTA 57.366 33.333 34.16 0.00 41.20 2.24
477 509 8.532186 AAGACACATCTAGATGAGACATAGTT 57.468 34.615 34.16 16.09 41.20 2.24
478 510 9.283768 CTAAGACACATCTAGATGAGACATAGT 57.716 37.037 34.16 20.01 41.20 2.12
479 511 9.500785 TCTAAGACACATCTAGATGAGACATAG 57.499 37.037 34.16 28.22 41.20 2.23
480 512 9.278978 GTCTAAGACACATCTAGATGAGACATA 57.721 37.037 34.16 22.37 41.77 2.29
481 513 7.777440 TGTCTAAGACACATCTAGATGAGACAT 59.223 37.037 30.21 22.35 38.81 3.06
482 514 7.112779 TGTCTAAGACACATCTAGATGAGACA 58.887 38.462 30.21 30.21 40.10 3.41
483 515 7.561021 TGTCTAAGACACATCTAGATGAGAC 57.439 40.000 34.16 30.12 38.07 3.36
484 516 8.462811 GTTTGTCTAAGACACATCTAGATGAGA 58.537 37.037 34.16 22.83 42.60 3.27
485 517 7.704472 GGTTTGTCTAAGACACATCTAGATGAG 59.296 40.741 34.16 28.70 42.60 2.90
486 518 7.363880 GGGTTTGTCTAAGACACATCTAGATGA 60.364 40.741 34.16 13.45 42.60 2.92
487 519 6.758886 GGGTTTGTCTAAGACACATCTAGATG 59.241 42.308 27.63 27.63 42.60 2.90
488 520 6.440647 TGGGTTTGTCTAAGACACATCTAGAT 59.559 38.462 0.00 0.00 42.60 1.98
489 521 5.778241 TGGGTTTGTCTAAGACACATCTAGA 59.222 40.000 0.00 0.00 42.60 2.43
490 522 6.037786 TGGGTTTGTCTAAGACACATCTAG 57.962 41.667 0.00 0.00 42.60 2.43
491 523 6.183361 TGTTGGGTTTGTCTAAGACACATCTA 60.183 38.462 0.00 0.00 42.60 1.98
492 524 4.974645 TGGGTTTGTCTAAGACACATCT 57.025 40.909 0.00 0.00 42.60 2.90
493 525 4.819630 TGTTGGGTTTGTCTAAGACACATC 59.180 41.667 0.00 0.00 42.60 3.06
494 526 4.787551 TGTTGGGTTTGTCTAAGACACAT 58.212 39.130 0.00 0.00 42.60 3.21
495 527 4.223556 TGTTGGGTTTGTCTAAGACACA 57.776 40.909 0.00 0.00 42.60 3.72
496 528 5.767816 ATTGTTGGGTTTGTCTAAGACAC 57.232 39.130 0.00 0.00 42.60 3.67
497 529 7.883391 TTAATTGTTGGGTTTGTCTAAGACA 57.117 32.000 0.00 0.00 41.09 3.41
498 530 8.192110 TGTTTAATTGTTGGGTTTGTCTAAGAC 58.808 33.333 0.00 0.00 0.00 3.01
499 531 8.294954 TGTTTAATTGTTGGGTTTGTCTAAGA 57.705 30.769 0.00 0.00 0.00 2.10
500 532 8.977505 CATGTTTAATTGTTGGGTTTGTCTAAG 58.022 33.333 0.00 0.00 0.00 2.18
501 533 8.478877 ACATGTTTAATTGTTGGGTTTGTCTAA 58.521 29.630 0.00 0.00 0.00 2.10
502 534 7.923344 CACATGTTTAATTGTTGGGTTTGTCTA 59.077 33.333 0.00 0.00 0.00 2.59
503 535 6.760770 CACATGTTTAATTGTTGGGTTTGTCT 59.239 34.615 0.00 0.00 0.00 3.41
504 536 6.536941 ACACATGTTTAATTGTTGGGTTTGTC 59.463 34.615 0.00 0.00 0.00 3.18
505 537 6.410540 ACACATGTTTAATTGTTGGGTTTGT 58.589 32.000 0.00 0.00 0.00 2.83
506 538 6.917217 ACACATGTTTAATTGTTGGGTTTG 57.083 33.333 0.00 0.00 0.00 2.93
507 539 8.041323 TGTTACACATGTTTAATTGTTGGGTTT 58.959 29.630 7.67 0.00 0.00 3.27
508 540 7.556844 TGTTACACATGTTTAATTGTTGGGTT 58.443 30.769 7.67 0.00 0.00 4.11
509 541 7.113658 TGTTACACATGTTTAATTGTTGGGT 57.886 32.000 7.67 0.00 0.00 4.51
510 542 6.145371 GCTGTTACACATGTTTAATTGTTGGG 59.855 38.462 7.67 0.00 0.00 4.12
511 543 6.922957 AGCTGTTACACATGTTTAATTGTTGG 59.077 34.615 7.67 0.00 0.00 3.77
512 544 7.928908 AGCTGTTACACATGTTTAATTGTTG 57.071 32.000 7.67 0.00 0.00 3.33
526 558 3.526931 TCTCATGGCTAGCTGTTACAC 57.473 47.619 15.72 0.00 0.00 2.90
562 599 0.179001 AGGTGCTAAAACTGCCCGTT 60.179 50.000 0.00 0.00 37.47 4.44
563 600 0.688487 TAGGTGCTAAAACTGCCCGT 59.312 50.000 0.00 0.00 0.00 5.28
564 601 1.066430 TCTAGGTGCTAAAACTGCCCG 60.066 52.381 0.00 0.00 0.00 6.13
565 602 2.781681 TCTAGGTGCTAAAACTGCCC 57.218 50.000 0.00 0.00 0.00 5.36
566 603 3.810386 GCTATCTAGGTGCTAAAACTGCC 59.190 47.826 0.00 0.00 0.00 4.85
650 687 6.034898 GCGTGTCAATAATGCAGCTAATTTTT 59.965 34.615 0.00 0.00 0.00 1.94
651 688 5.516339 GCGTGTCAATAATGCAGCTAATTTT 59.484 36.000 0.00 0.00 0.00 1.82
652 689 5.036737 GCGTGTCAATAATGCAGCTAATTT 58.963 37.500 0.00 0.00 0.00 1.82
653 690 4.096231 TGCGTGTCAATAATGCAGCTAATT 59.904 37.500 0.00 0.00 34.69 1.40
654 691 3.627123 TGCGTGTCAATAATGCAGCTAAT 59.373 39.130 0.00 0.00 34.69 1.73
658 695 3.994729 TGCGTGTCAATAATGCAGC 57.005 47.368 0.00 0.00 34.69 5.25
661 698 2.179589 CAAGCTGCGTGTCAATAATGC 58.820 47.619 7.43 0.00 0.00 3.56
773 819 4.868171 TCATTCGGTTATCTTTTGTCCTCG 59.132 41.667 0.00 0.00 0.00 4.63
852 898 7.552050 TTTCATCAAACATTTTCCCACCTAT 57.448 32.000 0.00 0.00 0.00 2.57
855 901 7.509141 AATTTTCATCAAACATTTTCCCACC 57.491 32.000 0.00 0.00 0.00 4.61
922 968 1.470996 GGGCCATCCACACAAAAGCA 61.471 55.000 4.39 0.00 35.00 3.91
945 991 3.518992 AGCTATAGGACTCTCTGGGTC 57.481 52.381 1.04 0.00 0.00 4.46
981 1027 1.602888 GCCATAGCCTGCCCTGATG 60.603 63.158 0.00 0.00 0.00 3.07
983 1029 2.691996 TGCCATAGCCTGCCCTGA 60.692 61.111 0.00 0.00 38.69 3.86
1080 1137 3.901797 GAGGTTGCCGGTGGAGGTG 62.902 68.421 1.90 0.00 0.00 4.00
1250 1307 0.108424 CGACCTTCTCCTCAGCTTGG 60.108 60.000 0.00 0.00 0.00 3.61
1452 1512 2.126071 ATCACCGCGTTCCACGAG 60.126 61.111 4.92 0.00 46.05 4.18
1744 1807 5.735766 ACTTATCAAGAGAGCAACCCTTAC 58.264 41.667 0.00 0.00 0.00 2.34
1745 1808 6.668283 ACTACTTATCAAGAGAGCAACCCTTA 59.332 38.462 0.00 0.00 0.00 2.69
1746 1809 4.917906 ACTTATCAAGAGAGCAACCCTT 57.082 40.909 0.00 0.00 0.00 3.95
1769 1832 2.840576 TGGCCACCCCAACTACAC 59.159 61.111 0.00 0.00 41.82 2.90
1807 1870 7.095523 GCACTTACTACTAGAGATAAGGACTCG 60.096 44.444 0.00 0.00 39.12 4.18
1852 1920 9.345517 CCATTCATGTTGAAAAGTTACATACTG 57.654 33.333 0.00 0.00 40.12 2.74
1873 1941 3.715628 AGCATAACAAATCGCCCATTC 57.284 42.857 0.00 0.00 0.00 2.67
1877 1945 2.665519 CGCATAGCATAACAAATCGCCC 60.666 50.000 0.00 0.00 0.00 6.13
1980 2053 2.038557 CGTTATGGCCAGCCTAATAGGT 59.961 50.000 13.05 0.00 37.80 3.08
1981 2054 2.615493 CCGTTATGGCCAGCCTAATAGG 60.615 54.545 13.05 9.27 38.80 2.57
1983 2056 1.349688 CCCGTTATGGCCAGCCTAATA 59.650 52.381 13.05 0.00 36.94 0.98
1984 2057 0.110486 CCCGTTATGGCCAGCCTAAT 59.890 55.000 13.05 0.00 36.94 1.73
1985 2058 1.529796 CCCGTTATGGCCAGCCTAA 59.470 57.895 13.05 1.71 36.94 2.69
1987 2060 3.809013 CCCCGTTATGGCCAGCCT 61.809 66.667 13.05 0.00 36.94 4.58
1988 2061 2.273588 TTACCCCGTTATGGCCAGCC 62.274 60.000 13.05 0.38 35.87 4.85
1989 2062 1.099295 GTTACCCCGTTATGGCCAGC 61.099 60.000 13.05 2.82 35.87 4.85
1990 2063 0.253610 TGTTACCCCGTTATGGCCAG 59.746 55.000 13.05 0.00 35.87 4.85
1991 2064 0.920438 ATGTTACCCCGTTATGGCCA 59.080 50.000 8.56 8.56 35.87 5.36
1992 2065 2.061509 AATGTTACCCCGTTATGGCC 57.938 50.000 0.00 0.00 35.87 5.36
1993 2066 3.812262 AGTAATGTTACCCCGTTATGGC 58.188 45.455 0.00 0.00 35.87 4.40
1994 2067 6.165700 ACTAGTAATGTTACCCCGTTATGG 57.834 41.667 0.00 0.00 34.19 2.74
1995 2068 8.579006 TGATACTAGTAATGTTACCCCGTTATG 58.421 37.037 6.70 0.00 34.19 1.90
1996 2069 8.710749 TGATACTAGTAATGTTACCCCGTTAT 57.289 34.615 6.70 0.00 34.19 1.89
1997 2070 8.710749 ATGATACTAGTAATGTTACCCCGTTA 57.289 34.615 6.70 0.00 34.19 3.18
1998 2071 7.607615 ATGATACTAGTAATGTTACCCCGTT 57.392 36.000 6.70 0.00 34.19 4.44
1999 2072 8.890410 ATATGATACTAGTAATGTTACCCCGT 57.110 34.615 6.70 0.00 34.19 5.28
2011 2084 9.736414 GTGAGTCCCAAGTATATGATACTAGTA 57.264 37.037 4.77 4.77 0.00 1.82
2012 2085 8.225416 TGTGAGTCCCAAGTATATGATACTAGT 58.775 37.037 0.00 0.00 0.00 2.57
2013 2086 8.637196 TGTGAGTCCCAAGTATATGATACTAG 57.363 38.462 0.00 0.00 0.00 2.57
2014 2087 9.429109 TTTGTGAGTCCCAAGTATATGATACTA 57.571 33.333 0.00 0.00 0.00 1.82
2015 2088 7.914427 TTGTGAGTCCCAAGTATATGATACT 57.086 36.000 0.00 0.00 0.00 2.12
2016 2089 7.985184 TGTTTGTGAGTCCCAAGTATATGATAC 59.015 37.037 0.00 0.00 0.00 2.24
2017 2090 8.084985 TGTTTGTGAGTCCCAAGTATATGATA 57.915 34.615 0.00 0.00 0.00 2.15
2018 2091 6.957631 TGTTTGTGAGTCCCAAGTATATGAT 58.042 36.000 0.00 0.00 0.00 2.45
2019 2092 6.367374 TGTTTGTGAGTCCCAAGTATATGA 57.633 37.500 0.00 0.00 0.00 2.15
2020 2093 6.458751 GCATGTTTGTGAGTCCCAAGTATATG 60.459 42.308 0.00 0.00 0.00 1.78
2021 2094 5.590259 GCATGTTTGTGAGTCCCAAGTATAT 59.410 40.000 0.00 0.00 0.00 0.86
2022 2095 4.941263 GCATGTTTGTGAGTCCCAAGTATA 59.059 41.667 0.00 0.00 0.00 1.47
2023 2096 3.758554 GCATGTTTGTGAGTCCCAAGTAT 59.241 43.478 0.00 0.00 0.00 2.12
2024 2097 3.146066 GCATGTTTGTGAGTCCCAAGTA 58.854 45.455 0.00 0.00 0.00 2.24
2025 2098 1.956477 GCATGTTTGTGAGTCCCAAGT 59.044 47.619 0.00 0.00 0.00 3.16
2026 2099 2.233271 AGCATGTTTGTGAGTCCCAAG 58.767 47.619 0.00 0.00 0.00 3.61
2027 2100 2.363306 AGCATGTTTGTGAGTCCCAA 57.637 45.000 0.00 0.00 0.00 4.12
2028 2101 2.363306 AAGCATGTTTGTGAGTCCCA 57.637 45.000 0.00 0.00 0.00 4.37
2029 2102 3.758554 ACATAAGCATGTTTGTGAGTCCC 59.241 43.478 22.45 0.00 42.98 4.46
2030 2103 4.455533 TCACATAAGCATGTTTGTGAGTCC 59.544 41.667 22.45 0.00 42.98 3.85
2031 2104 5.049474 TGTCACATAAGCATGTTTGTGAGTC 60.049 40.000 22.45 13.96 46.47 3.36
2032 2105 4.821260 TGTCACATAAGCATGTTTGTGAGT 59.179 37.500 22.45 5.69 46.47 3.41
2033 2106 5.179929 TCTGTCACATAAGCATGTTTGTGAG 59.820 40.000 22.45 15.82 46.47 3.51
2034 2107 5.049474 GTCTGTCACATAAGCATGTTTGTGA 60.049 40.000 22.45 16.98 42.98 3.58
2035 2108 5.149273 GTCTGTCACATAAGCATGTTTGTG 58.851 41.667 15.72 15.72 42.98 3.33
2036 2109 4.821260 TGTCTGTCACATAAGCATGTTTGT 59.179 37.500 4.89 0.00 42.98 2.83
2037 2110 5.361135 TGTCTGTCACATAAGCATGTTTG 57.639 39.130 4.89 0.00 42.98 2.93
2038 2111 6.579666 ATTGTCTGTCACATAAGCATGTTT 57.420 33.333 0.00 0.00 42.98 2.83
2039 2112 6.579666 AATTGTCTGTCACATAAGCATGTT 57.420 33.333 0.00 0.00 42.98 2.71
2040 2113 7.686438 TTAATTGTCTGTCACATAAGCATGT 57.314 32.000 0.00 0.00 46.58 3.21
2041 2114 8.453320 TCTTTAATTGTCTGTCACATAAGCATG 58.547 33.333 0.00 0.00 33.90 4.06
2042 2115 8.565896 TCTTTAATTGTCTGTCACATAAGCAT 57.434 30.769 0.00 0.00 33.90 3.79
2043 2116 7.977789 TCTTTAATTGTCTGTCACATAAGCA 57.022 32.000 0.00 0.00 33.90 3.91
2044 2117 8.721478 TCTTCTTTAATTGTCTGTCACATAAGC 58.279 33.333 0.00 0.00 33.90 3.09
2048 2121 9.342308 TCTTTCTTCTTTAATTGTCTGTCACAT 57.658 29.630 0.00 0.00 33.90 3.21
2049 2122 8.731275 TCTTTCTTCTTTAATTGTCTGTCACA 57.269 30.769 0.00 0.00 0.00 3.58
2050 2123 9.046296 TCTCTTTCTTCTTTAATTGTCTGTCAC 57.954 33.333 0.00 0.00 0.00 3.67
2051 2124 9.265901 CTCTCTTTCTTCTTTAATTGTCTGTCA 57.734 33.333 0.00 0.00 0.00 3.58
2052 2125 8.716909 CCTCTCTTTCTTCTTTAATTGTCTGTC 58.283 37.037 0.00 0.00 0.00 3.51
2053 2126 8.432805 TCCTCTCTTTCTTCTTTAATTGTCTGT 58.567 33.333 0.00 0.00 0.00 3.41
2054 2127 8.839310 TCCTCTCTTTCTTCTTTAATTGTCTG 57.161 34.615 0.00 0.00 0.00 3.51
2055 2128 9.665719 GATCCTCTCTTTCTTCTTTAATTGTCT 57.334 33.333 0.00 0.00 0.00 3.41
2056 2129 9.442047 TGATCCTCTCTTTCTTCTTTAATTGTC 57.558 33.333 0.00 0.00 0.00 3.18
2057 2130 9.972106 ATGATCCTCTCTTTCTTCTTTAATTGT 57.028 29.630 0.00 0.00 0.00 2.71
2064 2137 9.261035 TGTTACTATGATCCTCTCTTTCTTCTT 57.739 33.333 0.00 0.00 0.00 2.52
2065 2138 8.830915 TGTTACTATGATCCTCTCTTTCTTCT 57.169 34.615 0.00 0.00 0.00 2.85
2068 2141 9.308000 CCTATGTTACTATGATCCTCTCTTTCT 57.692 37.037 0.00 0.00 0.00 2.52
2069 2142 9.084533 ACCTATGTTACTATGATCCTCTCTTTC 57.915 37.037 0.00 0.00 0.00 2.62
2071 2144 9.747898 CTACCTATGTTACTATGATCCTCTCTT 57.252 37.037 0.00 0.00 0.00 2.85
2072 2145 9.118367 TCTACCTATGTTACTATGATCCTCTCT 57.882 37.037 0.00 0.00 0.00 3.10
2073 2146 9.914834 ATCTACCTATGTTACTATGATCCTCTC 57.085 37.037 0.00 0.00 0.00 3.20
2076 2149 9.924010 GGTATCTACCTATGTTACTATGATCCT 57.076 37.037 0.00 0.00 43.10 3.24
2077 2150 8.838365 CGGTATCTACCTATGTTACTATGATCC 58.162 40.741 4.93 0.00 44.25 3.36
2078 2151 9.393512 ACGGTATCTACCTATGTTACTATGATC 57.606 37.037 4.93 0.00 44.25 2.92
2113 2186 9.830975 TGCATGACACATAGTAGTATAACATTT 57.169 29.630 0.00 0.00 0.00 2.32
2115 2188 9.428097 CATGCATGACACATAGTAGTATAACAT 57.572 33.333 22.59 0.00 0.00 2.71
2116 2189 8.637986 TCATGCATGACACATAGTAGTATAACA 58.362 33.333 25.42 0.00 0.00 2.41
2133 2206 4.038282 GGCCTCATTTATTGTCATGCATGA 59.962 41.667 25.42 25.42 0.00 3.07
2134 2207 4.202172 TGGCCTCATTTATTGTCATGCATG 60.202 41.667 21.07 21.07 0.00 4.06
2135 2208 3.962063 TGGCCTCATTTATTGTCATGCAT 59.038 39.130 3.32 0.00 0.00 3.96
2136 2209 3.363627 TGGCCTCATTTATTGTCATGCA 58.636 40.909 3.32 0.00 0.00 3.96
2137 2210 4.595762 ATGGCCTCATTTATTGTCATGC 57.404 40.909 3.32 0.00 0.00 4.06
2146 2219 9.744125 AGGGAGTATTATATATGGCCTCATTTA 57.256 33.333 3.32 0.00 34.96 1.40
2147 2220 8.644432 AGGGAGTATTATATATGGCCTCATTT 57.356 34.615 3.32 0.00 34.96 2.32
2148 2221 8.076881 AGAGGGAGTATTATATATGGCCTCATT 58.923 37.037 3.32 0.00 34.96 2.57
2149 2222 7.512058 CAGAGGGAGTATTATATATGGCCTCAT 59.488 40.741 3.32 0.00 37.40 2.90
2150 2223 6.841229 CAGAGGGAGTATTATATATGGCCTCA 59.159 42.308 3.32 0.00 0.00 3.86
2151 2224 6.841755 ACAGAGGGAGTATTATATATGGCCTC 59.158 42.308 3.32 0.00 0.00 4.70
2152 2225 6.757317 ACAGAGGGAGTATTATATATGGCCT 58.243 40.000 3.32 0.00 0.00 5.19
2153 2226 6.042208 GGACAGAGGGAGTATTATATATGGCC 59.958 46.154 0.00 0.00 0.00 5.36
2154 2227 6.042208 GGGACAGAGGGAGTATTATATATGGC 59.958 46.154 0.00 0.00 0.00 4.40
2155 2228 6.265649 CGGGACAGAGGGAGTATTATATATGG 59.734 46.154 0.00 0.00 0.00 2.74
2156 2229 6.834451 ACGGGACAGAGGGAGTATTATATATG 59.166 42.308 0.00 0.00 0.00 1.78
2157 2230 6.982899 ACGGGACAGAGGGAGTATTATATAT 58.017 40.000 0.00 0.00 0.00 0.86
2158 2231 6.398655 ACGGGACAGAGGGAGTATTATATA 57.601 41.667 0.00 0.00 0.00 0.86
2159 2232 5.272405 ACGGGACAGAGGGAGTATTATAT 57.728 43.478 0.00 0.00 0.00 0.86
2160 2233 4.736611 ACGGGACAGAGGGAGTATTATA 57.263 45.455 0.00 0.00 0.00 0.98
2161 2234 3.614568 ACGGGACAGAGGGAGTATTAT 57.385 47.619 0.00 0.00 0.00 1.28
2162 2235 4.524802 TTACGGGACAGAGGGAGTATTA 57.475 45.455 0.00 0.00 0.00 0.98
2163 2236 3.393426 TTACGGGACAGAGGGAGTATT 57.607 47.619 0.00 0.00 0.00 1.89
2164 2237 3.231818 CATTACGGGACAGAGGGAGTAT 58.768 50.000 0.00 0.00 0.00 2.12
2165 2238 2.024655 ACATTACGGGACAGAGGGAGTA 60.025 50.000 0.00 0.00 0.00 2.59
2166 2239 1.273098 ACATTACGGGACAGAGGGAGT 60.273 52.381 0.00 0.00 0.00 3.85
2167 2240 1.486211 ACATTACGGGACAGAGGGAG 58.514 55.000 0.00 0.00 0.00 4.30
2168 2241 2.832643 TACATTACGGGACAGAGGGA 57.167 50.000 0.00 0.00 0.00 4.20
2169 2242 3.028850 TCTTACATTACGGGACAGAGGG 58.971 50.000 0.00 0.00 0.00 4.30
2170 2243 3.181478 GGTCTTACATTACGGGACAGAGG 60.181 52.174 0.00 0.00 0.00 3.69
2171 2244 3.700038 AGGTCTTACATTACGGGACAGAG 59.300 47.826 0.00 0.00 0.00 3.35
2172 2245 3.705051 AGGTCTTACATTACGGGACAGA 58.295 45.455 0.00 0.00 0.00 3.41
2173 2246 4.467198 AAGGTCTTACATTACGGGACAG 57.533 45.455 0.00 0.00 0.00 3.51
2174 2247 4.895668 AAAGGTCTTACATTACGGGACA 57.104 40.909 0.00 0.00 0.00 4.02
2217 2290 8.786826 TCCATCTCATAATGTAAGACGTTTTT 57.213 30.769 0.00 0.00 0.00 1.94
2218 2291 7.495934 CCTCCATCTCATAATGTAAGACGTTTT 59.504 37.037 0.00 0.00 0.00 2.43
2219 2292 6.986817 CCTCCATCTCATAATGTAAGACGTTT 59.013 38.462 0.00 0.00 0.00 3.60
2220 2293 6.463049 CCCTCCATCTCATAATGTAAGACGTT 60.463 42.308 0.00 0.00 0.00 3.99
2221 2294 5.011125 CCCTCCATCTCATAATGTAAGACGT 59.989 44.000 0.00 0.00 0.00 4.34
2222 2295 5.243954 TCCCTCCATCTCATAATGTAAGACG 59.756 44.000 0.00 0.00 0.00 4.18
2223 2296 6.268847 ACTCCCTCCATCTCATAATGTAAGAC 59.731 42.308 0.00 0.00 0.00 3.01
2224 2297 6.385443 ACTCCCTCCATCTCATAATGTAAGA 58.615 40.000 0.00 0.00 0.00 2.10
2225 2298 6.678568 ACTCCCTCCATCTCATAATGTAAG 57.321 41.667 0.00 0.00 0.00 2.34
2226 2299 7.306013 AGTACTCCCTCCATCTCATAATGTAA 58.694 38.462 0.00 0.00 0.00 2.41
2227 2300 6.864421 AGTACTCCCTCCATCTCATAATGTA 58.136 40.000 0.00 0.00 0.00 2.29
2228 2301 5.721225 AGTACTCCCTCCATCTCATAATGT 58.279 41.667 0.00 0.00 0.00 2.71
2229 2302 6.951198 AGTAGTACTCCCTCCATCTCATAATG 59.049 42.308 0.00 0.00 0.00 1.90
2230 2303 7.109901 AGTAGTACTCCCTCCATCTCATAAT 57.890 40.000 0.00 0.00 0.00 1.28
2231 2304 6.532119 AGTAGTACTCCCTCCATCTCATAA 57.468 41.667 0.00 0.00 0.00 1.90
2232 2305 6.532119 AAGTAGTACTCCCTCCATCTCATA 57.468 41.667 2.58 0.00 0.00 2.15
2233 2306 5.411103 AAGTAGTACTCCCTCCATCTCAT 57.589 43.478 2.58 0.00 0.00 2.90
2234 2307 4.883021 AAGTAGTACTCCCTCCATCTCA 57.117 45.455 2.58 0.00 0.00 3.27
2235 2308 7.005296 TCATAAAGTAGTACTCCCTCCATCTC 58.995 42.308 2.58 0.00 0.00 2.75
2236 2309 6.923670 TCATAAAGTAGTACTCCCTCCATCT 58.076 40.000 2.58 0.00 0.00 2.90
2237 2310 7.784470 ATCATAAAGTAGTACTCCCTCCATC 57.216 40.000 2.58 0.00 0.00 3.51
2238 2311 7.393796 CGTATCATAAAGTAGTACTCCCTCCAT 59.606 40.741 2.58 0.00 0.00 3.41
2239 2312 6.713903 CGTATCATAAAGTAGTACTCCCTCCA 59.286 42.308 2.58 0.00 0.00 3.86
2240 2313 6.939163 TCGTATCATAAAGTAGTACTCCCTCC 59.061 42.308 2.58 0.00 0.00 4.30
2241 2314 7.976135 TCGTATCATAAAGTAGTACTCCCTC 57.024 40.000 2.58 0.00 0.00 4.30
2242 2315 7.094291 GCATCGTATCATAAAGTAGTACTCCCT 60.094 40.741 2.58 0.00 0.00 4.20
2243 2316 7.028361 GCATCGTATCATAAAGTAGTACTCCC 58.972 42.308 2.58 0.00 0.00 4.30
2244 2317 7.537991 GTGCATCGTATCATAAAGTAGTACTCC 59.462 40.741 2.58 0.00 0.00 3.85
2245 2318 8.291032 AGTGCATCGTATCATAAAGTAGTACTC 58.709 37.037 2.58 0.00 0.00 2.59
2246 2319 8.167605 AGTGCATCGTATCATAAAGTAGTACT 57.832 34.615 0.00 0.00 0.00 2.73
2249 2322 8.029522 CCATAGTGCATCGTATCATAAAGTAGT 58.970 37.037 0.00 0.00 0.00 2.73
2250 2323 7.009631 GCCATAGTGCATCGTATCATAAAGTAG 59.990 40.741 0.00 0.00 0.00 2.57
2251 2324 6.811665 GCCATAGTGCATCGTATCATAAAGTA 59.188 38.462 0.00 0.00 0.00 2.24
2252 2325 5.639506 GCCATAGTGCATCGTATCATAAAGT 59.360 40.000 0.00 0.00 0.00 2.66
2253 2326 5.871524 AGCCATAGTGCATCGTATCATAAAG 59.128 40.000 0.00 0.00 0.00 1.85
2254 2327 5.639082 CAGCCATAGTGCATCGTATCATAAA 59.361 40.000 0.00 0.00 0.00 1.40
2255 2328 5.170748 CAGCCATAGTGCATCGTATCATAA 58.829 41.667 0.00 0.00 0.00 1.90
2256 2329 4.220602 ACAGCCATAGTGCATCGTATCATA 59.779 41.667 0.00 0.00 0.00 2.15
2257 2330 3.007290 ACAGCCATAGTGCATCGTATCAT 59.993 43.478 0.00 0.00 0.00 2.45
2258 2331 2.365293 ACAGCCATAGTGCATCGTATCA 59.635 45.455 0.00 0.00 0.00 2.15
2259 2332 3.032017 ACAGCCATAGTGCATCGTATC 57.968 47.619 0.00 0.00 0.00 2.24
2260 2333 3.574396 ACTACAGCCATAGTGCATCGTAT 59.426 43.478 0.00 0.00 34.02 3.06
2261 2334 2.956333 ACTACAGCCATAGTGCATCGTA 59.044 45.455 0.00 0.00 34.02 3.43
2262 2335 1.757118 ACTACAGCCATAGTGCATCGT 59.243 47.619 0.00 0.00 34.02 3.73
2263 2336 2.515926 ACTACAGCCATAGTGCATCG 57.484 50.000 0.00 0.00 34.02 3.84
2264 2337 5.139435 TGATACTACAGCCATAGTGCATC 57.861 43.478 7.57 4.86 36.09 3.91
2265 2338 5.752036 ATGATACTACAGCCATAGTGCAT 57.248 39.130 7.57 7.98 36.09 3.96
2266 2339 5.538433 TGTATGATACTACAGCCATAGTGCA 59.462 40.000 4.03 6.37 36.09 4.57
2267 2340 5.864474 GTGTATGATACTACAGCCATAGTGC 59.136 44.000 4.03 1.73 36.09 4.40
2268 2341 7.220741 AGTGTATGATACTACAGCCATAGTG 57.779 40.000 4.03 0.00 36.09 2.74
2269 2342 8.164733 ACTAGTGTATGATACTACAGCCATAGT 58.835 37.037 4.03 3.22 38.89 2.12
2270 2343 8.568676 ACTAGTGTATGATACTACAGCCATAG 57.431 38.462 4.03 2.12 32.45 2.23
2272 2345 9.179909 GATACTAGTGTATGATACTACAGCCAT 57.820 37.037 5.39 0.00 39.29 4.40
2273 2346 8.161425 TGATACTAGTGTATGATACTACAGCCA 58.839 37.037 5.39 0.00 39.29 4.75
2274 2347 8.563123 TGATACTAGTGTATGATACTACAGCC 57.437 38.462 5.39 0.00 39.29 4.85
2312 2385 9.736414 GGTCATAGTGGAGAGTAACATATACTA 57.264 37.037 0.00 0.00 0.00 1.82
2313 2386 8.225416 TGGTCATAGTGGAGAGTAACATATACT 58.775 37.037 0.00 0.00 0.00 2.12
2314 2387 8.405418 TGGTCATAGTGGAGAGTAACATATAC 57.595 38.462 0.00 0.00 0.00 1.47
2315 2388 7.176865 GCTGGTCATAGTGGAGAGTAACATATA 59.823 40.741 0.00 0.00 0.00 0.86
2316 2389 6.015010 GCTGGTCATAGTGGAGAGTAACATAT 60.015 42.308 0.00 0.00 0.00 1.78
2317 2390 5.302059 GCTGGTCATAGTGGAGAGTAACATA 59.698 44.000 0.00 0.00 0.00 2.29
2318 2391 4.100189 GCTGGTCATAGTGGAGAGTAACAT 59.900 45.833 0.00 0.00 0.00 2.71
2319 2392 3.447586 GCTGGTCATAGTGGAGAGTAACA 59.552 47.826 0.00 0.00 0.00 2.41
2320 2393 3.181474 GGCTGGTCATAGTGGAGAGTAAC 60.181 52.174 0.00 0.00 0.00 2.50
2321 2394 3.031736 GGCTGGTCATAGTGGAGAGTAA 58.968 50.000 0.00 0.00 0.00 2.24
2322 2395 2.245028 AGGCTGGTCATAGTGGAGAGTA 59.755 50.000 0.00 0.00 0.00 2.59
2323 2396 1.007721 AGGCTGGTCATAGTGGAGAGT 59.992 52.381 0.00 0.00 0.00 3.24
2324 2397 1.786937 AGGCTGGTCATAGTGGAGAG 58.213 55.000 0.00 0.00 0.00 3.20
2325 2398 2.254152 AAGGCTGGTCATAGTGGAGA 57.746 50.000 0.00 0.00 0.00 3.71
2326 2399 3.034635 AGTAAGGCTGGTCATAGTGGAG 58.965 50.000 0.00 0.00 0.00 3.86
2327 2400 3.031736 GAGTAAGGCTGGTCATAGTGGA 58.968 50.000 0.00 0.00 0.00 4.02
2328 2401 2.103263 GGAGTAAGGCTGGTCATAGTGG 59.897 54.545 0.00 0.00 0.00 4.00
2329 2402 3.034635 AGGAGTAAGGCTGGTCATAGTG 58.965 50.000 0.00 0.00 0.00 2.74
2330 2403 3.034635 CAGGAGTAAGGCTGGTCATAGT 58.965 50.000 0.00 0.00 0.00 2.12
2331 2404 2.224161 GCAGGAGTAAGGCTGGTCATAG 60.224 54.545 0.00 0.00 0.00 2.23
2332 2405 1.762957 GCAGGAGTAAGGCTGGTCATA 59.237 52.381 0.00 0.00 0.00 2.15
2333 2406 0.543749 GCAGGAGTAAGGCTGGTCAT 59.456 55.000 0.00 0.00 0.00 3.06
2334 2407 0.545309 AGCAGGAGTAAGGCTGGTCA 60.545 55.000 0.00 0.00 36.34 4.02
2335 2408 0.615850 AAGCAGGAGTAAGGCTGGTC 59.384 55.000 0.00 0.00 38.04 4.02
2336 2409 1.003696 GAAAGCAGGAGTAAGGCTGGT 59.996 52.381 0.00 0.00 38.04 4.00
2337 2410 1.003580 TGAAAGCAGGAGTAAGGCTGG 59.996 52.381 0.00 0.00 38.04 4.85
2338 2411 2.027745 TCTGAAAGCAGGAGTAAGGCTG 60.028 50.000 0.00 0.00 42.53 4.85
2339 2412 2.260822 TCTGAAAGCAGGAGTAAGGCT 58.739 47.619 0.00 0.00 42.53 4.58
2340 2413 2.770164 TCTGAAAGCAGGAGTAAGGC 57.230 50.000 0.00 0.00 42.53 4.35
2341 2414 4.397417 CCAAATCTGAAAGCAGGAGTAAGG 59.603 45.833 0.00 0.00 42.53 2.69
2342 2415 4.142513 GCCAAATCTGAAAGCAGGAGTAAG 60.143 45.833 0.00 0.00 42.53 2.34
2346 2419 2.444421 AGCCAAATCTGAAAGCAGGAG 58.556 47.619 0.00 0.00 42.53 3.69
2398 2472 5.622770 AAGGTACAAAATTAAGACGCAGG 57.377 39.130 0.00 0.00 0.00 4.85
2406 2480 5.302313 ACGGCCTCAAAAGGTACAAAATTAA 59.698 36.000 0.00 0.00 45.34 1.40
2407 2481 4.828387 ACGGCCTCAAAAGGTACAAAATTA 59.172 37.500 0.00 0.00 45.34 1.40
2408 2482 3.639561 ACGGCCTCAAAAGGTACAAAATT 59.360 39.130 0.00 0.00 45.34 1.82
2409 2483 3.227614 ACGGCCTCAAAAGGTACAAAAT 58.772 40.909 0.00 0.00 45.34 1.82
2600 2707 7.949690 TCACCTGATCAATTTTCTTGATGAT 57.050 32.000 5.25 0.00 39.08 2.45
2626 2733 0.673644 CCCTTTCGAACATCGTGGCT 60.674 55.000 0.00 0.00 41.35 4.75
2726 2834 2.279741 GATCACACACACACACACACT 58.720 47.619 0.00 0.00 0.00 3.55
2819 2933 5.880341 AGCATTACCGCTTAAAATGACTTC 58.120 37.500 1.79 0.00 39.99 3.01
2868 2982 6.259608 AGCTCAAACGGATCTCAGAAAATATG 59.740 38.462 0.00 0.00 0.00 1.78
2883 2997 0.447801 GTGTGCCATAGCTCAAACGG 59.552 55.000 0.00 0.00 43.62 4.44
2887 3001 2.466846 TCTAGGTGTGCCATAGCTCAA 58.533 47.619 0.00 0.00 43.62 3.02
2899 3013 6.179756 TCAAATGCACAATACATCTAGGTGT 58.820 36.000 14.29 14.29 36.13 4.16
2915 3029 6.155136 TGAAATGCGTAAAAGATCAAATGCA 58.845 32.000 0.00 0.00 38.17 3.96
2922 3036 5.288712 TCGACTCTGAAATGCGTAAAAGATC 59.711 40.000 0.00 0.00 0.00 2.75
2924 3038 4.552355 TCGACTCTGAAATGCGTAAAAGA 58.448 39.130 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.