>input_sequence_64442
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-----AGCTGCACGTACTGCATGAGCATCATC-----TCCATGGATCACCTACTCAACATCAAGCCTCCTCTCCCG----
--CTACCAGCCCCCTCCACCTCCACCGGCAACCTCAAGCTGAGGGCATCCACGGAGGCCGTCCTCAAGGTCAGGCATCTC
CTCCATGCCTTCGCCGTCAAGCACGCCGGCCGCCTCGCAGGAGCCCTCGCCGGCGCAAGGTCGGCGCTCCTCGGTCTCCT
CAACGCCAAGACCGGCCTCGTCGCCACCAAGCTGAGGAGAAGGTCGTCGTCGACCAAGGCCAGGAAGAAGAGCAAGGAGC
CGTGCTGCCCCGGCGGCGGCGGTGCCAATGCCACCCCGACGCAGTACCTCAACCTGCTCCCTGACGGCGCCGTGCCTTCG
TGGTCGTTAGGGGAGCCATCGCCCACTGAGACTGAGGCCACCGGCGGCGTGGCCTACTACT---ACGACCCCTCGTGGAA
CGCGGTGATCCCTGCCGAACAGCTGTCGCCGATGATCGCCGGCCGGTGTCTGGAGTGGCCCGAGCCGGACGGGGTGGAGG
AGGAGGGCGGTTGCAACGAGATCGACAGGCTCGCTGAGAGGTTCATCGCCAGGTGCCATGAGAGGTTCGTCCTGGAGAAG
CAGGCGTCCTTCAGGAGGTTCCAGGAGATGCTGGCTAGGAGCTTTTAGGAACTTGTTTTTCTTAATGC---ATGACTTGG
TCATGATTTCGATTACTAGTACTCAAGTTTTGTCAAAAACTTAGTAGTAAGGGTTGCTCTCTTGATAAGTAGTGTAGTTG
GGGTGGCCATCAGTGCTTATGGATGTCACCGAGT-----CCTTATCTCTAGTAGTAAGTGCATAACATTTGTAATTTTTC
AGTATGTAACTTTTCAACATGAATGGGCGATTTGTTATGCTATGCGTAGTTGCTTTTGGTTCATGGCAGTACCTAGCCTG
CAATCTTTTCAACGTTTCAACATTAA-----A------------------------------------------------
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>chr5B_1_TraesCS5B01G170900
CAACTAATCATGGATCTGTTGGACATGGTGAATATGAGAAGCTTCTTTTGTCCCCACTCTCCCTTTAGTTTCTTCTTAGT
TTGGCGGGAAAAGCCAGCGGAGTCGCCTCGTTGCTTTCGTTCAAACAAAGAACAGAAGGGAATCCCCCAGCTTTCAAGAA
AAT--AAAAGCAGAACCCCCCTGATTTTGTATGACCAAATAGAAAGGAAAAGCTGTGGAAGACTGAGTGAGAGTGGGAAA
GATGACAGAAGATTTTTCT-----------------------------TTGCTATGCATGGCATATGCTTCTCTATTCTG
CATCAGTTGAAATCGAAGTAGCACAAAATTAGTAAACAATTAACAGTTTGTTTAATTCACATCTAGATGTTTTTTAAGGA
TGCCACATCTAAGCTCCCACATACATATAATGCAACAACAAGAAACAAAAAAAAACAGAACAAAAAAATAGACCACAAAC
AGGATGGACATTAGATTAGATGTGACATAACTATGTCTCATCTAGATGTGTCTTAGACAAACCCAACAATTAAACATGTG
TAACAGCTAGCCATGAGAAACTCATGAGTCAT-----GAACGGGCAGTTTTAGCACCTAGATAGCATGAAACCATGTGAA
ACAGATGCTCAGCAAATTCATTTTACCTGCATTATTTATTCAAGAAAAAAATTAGCTGCATTATTGACACGCAGCTTGTA
TAGCTGTGTGC--------ATCACTCGATGCAGAGGCGGAGGATCATTCCCTCTTTTCGAAAAA-TAAATAATATGTAGC
TTGTGCCATTTATATTCCCGAGGACAAAAGATAACCGAATGAATTACTACACATTTGCGCGTGACTGAATCCGACGAAGA
TCACGAAGCTAGACAGTATAGGTGGGAAAATGTTTGATGAAAATTAAGACCAACAAAGTATTCTCTTAAACGAATCAGCT
AGGTGAGTGCTTTTGTGTGGATGGCCCCCGGACCCAGAGAGTCCTATAGCTAGCACATATATTTGTCATCAGGGCAGGCT
ATGGCAGCTGCACGTACTGCATGAGCATCATC-----TCCATGGATCACCTACTCAACATCAAGCCTCCTCTCCCG----
--CTACCAGCCCCCTCCACCTCCACCGGCAACCTCAAGCTGAGGGCATCCACGGAGGCCGTCCTCAAGGTCAGGCATCTC
CTCCATGCCTTCGCCGTCAAGCACGCCGGCCGCCTCGCAGGAGCCCTCGCCGGCGCAAGGTCGGCGCTCCTCGGTCTCCT
CAACGCCAAGACCGGCCTCGTCGCCACCAAGCTGAGGAGAAGGTCGTCGTCGACCAAGGCCAGGAAGAAGAGCAAGGAGC
CGTGCTGCCCCGGCGGCGGCGGTGCCAATGCCACCCCGACGCAGTACCTCAACCTGCTCCCTGACGGCGCCGTGCCTTCG
TGGTCGTTAGGGGAGCCATCGCCCACTGAGACTGAGGCCACCGGCGGCGTGGCCTACTACT---ACGACCCCTCGTGGAA
CGCGGTGATCCCTGCCGAACAGCTGTCGCCGATGATCGCCGGCCGGTGTCTGGAGTGGCCCGAGCCGGACGGGGTGGAGG
AGGAGGGCGGTTGCAACGAGATCGACAGGCTCGCTGAGAGGTTCATCGCCAGGTGCCATGAGAGGTTCGTCCTGGAGAAG
CAGGCGTCCTTCAGGAGGTTCCAGGAGATGCTGGCTAGGAGCTTTTAGGAACTTGTTTTTCTTAATGC---ATGACTTGG
TCATGATTTCGATTACTAGTACTCAAGTTTTGTCAAAAACTTAGTAGTAAGGGTTGCTCTCTTGATAAGTAGTGTAGTTG
GGGTGGCCATCAGTGCTTATGGATGTCACCGAGT-----CCTTATCTCTAGTAGTAAGTGCATAACATTTGTAATTTTTC
AGTATGTAACTTTTCAACATGAATGGGCGATTTGTTATGCTATGCGTAGTTGCTTTTGGTTCATGGCAGTACCTAGCCTG
CAATCTTTTCAACGTTTCAACATTAA-----AAATTATAATCCTACAGTACTACCTATTAGGCTGGCCATAACGGGGTAA
CATTACTAGTATCATATACTTGGGACTCACAAACATGCTTATGTGACAGACAATTAAAGAAGAAAGAGAGGATCATAGTA
ACATAGGTAGATACCGTATCATAATAAATGTTATACTACTATGTGTCATGCATGACAATAAATGAGGCCATATATAATAC
TCCCTCTGTCCCGTAATGTAAGACCTTTTTTGATACTACACTAGTGTTAAAAAACGTCTTACATTATGAGATGGAGGGAG
TACTACTTTATGATACGATGCACTATGGCTGTAGTATCATACACTAGTATCATATGCATGATACTAGTATATGTTACTCT
CCACTATGACCAGCCTTACTCCTGCTTTCAGATTTGGCTTGCAATCTTTTTTGTGTGG-CCTCGGAGACATCCTGCGTCT
TAATTTTGTACCTTTTGAGGCCG-----------------------TCACAAATCATTCGACTGTCATTCCCTGTCGATT
TCACCACAAAGATCGATGCACACAT---AGTACCTCTAAAACGGC-------AAAAAACAATGTGTGAGCAAAAGGTTGC
TCGAGTAGTGAGCACAACATGATTGTGGTATTTGCTGCCGTTGACTTCCTGTCTTGGCGTCCATAAATCATCAAGAAAAT
TGATCAGGTGATAGCCACGATGTTCGAAAGGGGCATAAACTT-CAATAGTAAATCATCCCCATCCAGTGTCAAACAAAGG
CAACAAGCAGTTCAGTGTGCCATCCCAGTTCAGA------GTGTGTGTGTGTGTGTGATCCGCTAGCTGCAGGTTAGGTT
GTTTTCCTCTGCTTCATCTAATCCTGGGAAGCTAGCTACTCTGTAGTTTCACGAAGTCATTTTAAGCGGTAATGCTACTT
AGCGGTAGATCTCACATCGCTCATATTTTCTGAGATCCGTTTGAGCTATGGCACACCTAGATGTATTGTGCATTTGATCT
TTTACGCATTTCAGAGTCGAATCACTGTGCGGG
>chr5D_7
------ATCCTGGATCTGTTGGACATGATGAACATGAGAAGCTTCTTTTGTCCCCACTCTCCCTTTAGTTTCTTCTTAGT
TTGGCGGGAAAAGCCAGCGGAGTCGCCTCGTTGCTTTCGTTCAAACAAAGAACAGAAGGGAATCCCCCAGCTTTTAAAAC
---AAAAAAGCAGAACCCCCCTGATTTTGTATGACCAAATAGAAAGGAAAAGCTGTCGAGGACTAAGGGAGAGTGGGAAA
GATGACAGAAGATTTTTTTTTTTTGAATTTTATGACAGAAGATTTTTCTTGCTATGCATGGCATATGCTTCTCTATTCTG
CATCAATTGAAATCGAAGTAGCACAAATTAG-TA----------------------------------------------
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----------------------------------------------------------------AACAATTAAACATTTG
TAACAGCTAGCCATGAGAAACTCATGAGTCAT-----G-----GCAGTTTTAGCACATAGATGGCATGACACCATGTGAA
ACAGATGCTCAGCAAATTCATTTTACCTGCATTATTTATTCGAAAT-----TTACCTACATTATTGACACGCAGCTTGTA
TGGCTGTGTGCAACTGTGCATCACTCGATGCAGAGGCCGAGGATCATTCCCTCTTTTCG-AAAA-TAAATAATATGTAGC
TTGTGCCATTTATATTCCAGAGGACAAAAGATAACCGAATGAATTACTACACATTTGCGCGTGACTGAATCCGACGAAGA
TCACGAAGCTAGACAGTTTAAGTGGGAAAATGTTTGATGAAAATTAAGACCAACAAAGTATTCTCTTAAACGAATCAGCT
AGGTGAGAGCTTTTGTGTGGATGGCCCGCATACCCAGAGAGTCGTATGGCTAGCACATATATTTGTGAGCAGGGCAGGCT
ATGGCAGCTGCACGTACTGCATGAGCATCATCTCCATTCCATGGATCACCTACTCAACATCAAGCCTCCTCTCCCG----
--CTCCCAGCCCCCTCTGCCTCCACCGACAACCTCAAGCTGAGGGCATCCACGGAGGCCGTCCTCAAGGCCAGGCATCTC
CTCCACGCCTTCGTCGTCAAGCACGCCGGCCGCCTCGCAGGAGCCCTCGCCGGAGCAAGGTCGGCGCTCCTTGCTCTCCT
CAACGCCAAGACCGGCCTCGTCACCAGCAAGCTGAGGAGAAGGTCGTCGTCGACCAAGGCCAGGAAGAAGGGCAAGGAAC
CGTGCTGCTCCGGCGGCGGCGGTGGCAATGCCACCCCGACGCAGTACCTCAACCTGCTCCCTGACGGTGCCGTGCCTTCG
TGGTCGTTAGGGGAGCCATCGCCCGCTGAGATTGAGGCCGCCGCCGGCGCGGCCTACTACT---ACGACCCGTCGTGGAA
CGCGGTGATCCCTGCCGAACAGCTGTCGCCGATGATCGCCGGCCGGTTTCTGGAGTGGCCCGAGCCGGACGGGGTGGAGG
AGGAGGGCTGTTGCAACGAGATCGACAGCCTCGCTGAGAGGTTCATCGCCAGGTGCCATGAGAGGTTCGTCCTGGAGAAG
CAGGCGTCCTTCAGGAGATTCCAGGAGATGCTGGCTAGGAGCTTTTAGGAACTTGTTTTTCTTAATGCATGATGACTTGG
TCATGATTTCGATTACTAGTACTCCAGTTTTGTCAAAAACTTAGTA---AGAGTTGCTGCCTTGATACGTACTGTAGTTG
GGGTGGCCATCAGTGCTTATGGATGTCACTTAGTCCTTACCTTATCTCTAGTAAGTAGT-----ACATTTGTAATTTTTG
AGTATGTAACTTTTCAACATTAATCGGCGATTTGTTATGCTATGCGTAGTTGCTTTTGGTTCATGGCAGTACCTAGCCCA
CAATCTTTTTCAATGT------TTCA-----ACATTATAATCCCACAGTACGTACCTAT---------------------
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---------------TTAGTCCTGCTTTCGGATTTGGCCTGCAATCTTTTTTGTGTGG-CCTTGGAGACATTCTGCGTC-
---TTTTGTACCTTTTGAGGCCGCCTA-------------GAAAGTTCACAAATCATTCGACTGCCATTCCCTGTCGATT
TCACCACAAAGATCAATGCACACAT---AGTACCTGTAAAACAGCAAAAAAAAAAAAACAATGTGTGAGCAAAAGGTTGC
TCGAGTAGTGAGCACAACATGATTGTGGTATTTGCTGCCGTTGACTTCCTGTCTTGGCGTCCATAACGCATCAAGAAAAT
TGATCAGGTGATCGCCACGATGTTCGAAAGGGGCATAAACTT-CAGTAGTAAATCATCCCCATCCAGTGTCAAACAAAGG
CAACAAGCCGTTCAGTGTGCCATCCCAGTTCAGTGTGTGTGTGTGTGTGTGTGTGTGATCCGGTAGCTGTAGGCTAGGTT
ATTTTCCTCTGCTTCATCTAATCCTGGGAAGCTAGCTTCTCTATAGTTTCACAAAGTCATTTTAAGCGGTAATGCTACTT
AGCGGTAGATCTCACACCGCTTATATTTTCTGAGATGCGTGTGAGCTATGGTCCACTTAGATGTATTGCGCATTTCACCT
TTTACGCATTTCAGAGTCAAATCACTGTGCGG-
>chr5A_7
------ATCCTGGATCAGTTGGACATGGTGAATATGAGAAGCTTCTTTTGTCCCCACTCTCCCTTTAGTTTCTTCTTAGT
TTGGCGGGAAAAGCCAGCGGAGTCGCCTCGTTGCTTTCGTTCAAACAAAGAACCGAAGGGAATCCCCCAGCTTTCAAGAA
GAAAAAAAAGCAGAATCCCCCTGATTTTGTATGACCAAATAGAAAGGAAAAGCTGTCGAGGACTGAGGGGGAGTGGGAAA
GATGACAGAAGATTTTTCT-----------------------------TTGCTATGCATGGCATATGCCTCTCTATTCTG
CATCAATCGAAATCGAAGTAGCACAAAATTAATA----------------------------------------------
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----------------------------------------------------------------AACAATTAAACATTTG
TAGCAGCTAGCCATGAGAAACTCATAAGTCATGAACGG-----GCAGTTTTAGCACCTAGATGGCATGAAAC--------
----------------------------------------------------------CATTATTGACACGCAGTTTGTA
TGGCTGTGTGCATCACTCT-------GATGCGGAGGCCGAGAATCATTCCATCTTTTCG-AAAAATAAATAATATGTAGC
TTGTACCATATATATTCCAGAGGACAAAAGATAACCGAATGAATTACTACACATTTGCGCGTGACTGAATCCGACGAAGA
TCACGAAGCTAGACAGTGTAAGTGGGAAAATGTTTGATGAAAATTAAGACCAACAAAGTATTCTCTTAAACAAATCAGCT
AGGTGAGAGCTTTTGTGTGGATGGCCCGCATGCCCAGAGAGTCGTATAGCTAGCACATATATTTGTGAGCAGGGCAGGCT
ATGGCAGCTGCACGTACTGCATGAGCATCATC-----TCCATGGATCACCTACTCAACATCGAGCCTCCTCTCCCACTCC
CACTCCCAGCCCCCTCTACCACCACCGGCAACCTCAAGCTCAGGGCATCGACGGAGGCCGTCCTCAAGGCCAGGCATCTC
CTCCACGCCTTCGTCGTCAAGCACGCCGGCCGCCTCGCAGGAGCCCTCGCCGGCGCAAGCTCGGCGCTCCTCGGTCTCCT
CAACGCCAAGACCGGCCTCGTCGCCAGCAAGCTGAGGAGAAGGTCGTCGTCGACCAAGGCCACGAAGAAGAGCAAGGAGC
CATGCTGCCCCGGCGGCGGCGGTGGCAATGCCACCCCGACGCAGTACCTCAACCTGCTCCCTGACGGCGCCGTGCCTTCG
TGGTCGCTAGGGGAGCCATCGCCCA------CTGAGGCCGCCGGCGGCGTGGCCTGCTACTACTACGACCCGTCGTGGAA
CACGGTGATCCCTGCCGAACAGCTGTCGCCGATGATCGCCGGCCGGTGTCTGGAGTGGCCCGAGGAGGACGGAGTGGAGG
AGGAGGGCGGTTGCAACGAAATCGACAGGCTCGCTGAGAGGTTCATCGCCAGGTGCCATGAGAGGTTCGTCCTGGAGAAG
CAGGCGTCCTTCAGGAGGTTCCAGGAGATGCTGGCTAGGAGCTTTTAGGAACTTGTTTTTCTTAATGCA---TGACTTGG
TCATGATTTCGATTACTAGCACTCCAGTTTTGTCAAAAACTTAGTA---AGGGTTGCTCTCTTGATAAGCACTGTAGTTG
GGGTGGCCAGAAGTGCTTATGGATGTCACTGAGT-----CCTTATCTCTAGTAGTAAGT-----ACATTTGTAATTTTTG
AGTATGTAACTTTTCACCATTATCCGTTGATTTGTTATGCTATGCGTAGTTGCTTTTGGTTCATGGCAGTACCTAGCCTG
CAATCTTTTCAACGTTTCAACATTGGGAATTACAGTATAATCGTGCAGTACTTA--------------------------
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---------------TTATTCCTGCTATCAGATTTGACCTGCAATCCTTTTTGTGTGGGCCTCGGAGACATTCTGCGTC-
---TTTTGTACCTTTTGAGGCCGCCTTGAAATGGAGCCTTGAAAGTTCACAAATCATTAGACTGTCATTCCCTGTCGATT
TCACCACAAAGATCGATGCACACATAGGAGTACCTCTAAAACGGCAAAAAAAA----ACAATGTGTGAGCAAAAGGTTGC
TCGAGCAGCGAGCACAACATGATTGTGGTATTTGCTGCCCTTGACTTCCTGTCTTGGAGTCCATTTTTTTTTGTTGGAAA
ATGAGGATGACCTCTCGACTCTGTATCAGAGTGATGCATGCAACAATAGTAAATCATCCCCATCCGGCGTCAAACAAAGG
CAACAAGCCATTCAGTGTGCCATCCCAGTTCAGTGTGTGTGTG--------------ATCCGCTAGATGCAGGTTAGGTT
GTTTTCCTCTGCTTCGTCTAATCCTGGGAAGCTAGCTACTCTGTAGTTTCGCAAAGACATTTTAAGCAGTAATGCTACTT
AGCACTAGATCTCACATCGCTTATATTTTCTAAGATGCGTGCGAACTATGGCCCACCTAGATGTATTGCGCATTTCACCT
TTTACGCATTTCAGAGTCCAAT-----------
>SNPs
SSSSSS---S----------------------------------------------------------------------
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S-S-----------------------------------------------------S--S-------S------------
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-----S-------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S--
--------------------------------------SSSSS-------------------S-----------------
-----------------------------------------S-S-SSSSSS---S--S----------------------
-S-----------------------------------S---------------------S--------------------
------------------S-------------------------------------------------------------
-----------------S--S-----------------------------------------------------------
-------S-------------------S-SS------------S----------------------S-S-----------
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----S-----------S----------------------------------------------------S----------
-----S-------S------------------------------------------------------------------
--------------------------S-----------------------------------------------------
------------------------S-------------------------------------------------------
---------------------------------------S-------------------------------S--------
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------------------------S---------------------SSS----------------------S--------
-----------------------------S-----------------------------SSSSS---------------S
--------------------S---S-------------------------------------------------------
------------------------S-------S-------------------SS-SSS-SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS---S-------------------S--------------------------------S-------S
SSS-----------------------------------------------------------------------------
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------------------------------------------------------------------S-------------
------------S-------------------------------------------------------------------
--------S------------------------S----------------------------------------------
----------------------------------------------------S---------------------------
---------------------S--------------S---S-----------S---------------S------S-S--
------------------S-------------S
>forward_420
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TGCCACATCTAAGCTCCCAC------------------------------------------------------------
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>reverse_1307
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--------------------------CCAAGCTGAGGAGAAGGTCG----------------------------------
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>forward_1206
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------------------------------------------------------------------AGGTCAGGCATCTC
CTCCAT--------------------------------------------------------------------------
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>reverse_2057
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--------------------------------------------------------ATTAGGCTGGCCATAACGGG----
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