Multiple sequence alignment - TraesCS5B01G164100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G164100 chr5B 100.000 2717 0 0 1 2717 304124113 304126829 0.000000e+00 5018.0
1 TraesCS5B01G164100 chr5D 89.484 1550 61 42 215 1742 268516551 268518020 0.000000e+00 1866.0
2 TraesCS5B01G164100 chr5D 87.954 689 73 7 1793 2479 268518437 268519117 0.000000e+00 804.0
3 TraesCS5B01G164100 chr5D 81.330 466 72 12 2148 2606 447784532 447784989 5.530000e-97 364.0
4 TraesCS5B01G164100 chr5D 87.333 150 17 2 2514 2662 268519116 268519264 1.290000e-38 171.0
5 TraesCS5B01G164100 chr5A 90.852 1432 62 32 638 2048 356104064 356105447 0.000000e+00 1855.0
6 TraesCS5B01G164100 chr5A 89.947 378 23 14 250 616 356103697 356104070 8.800000e-130 473.0
7 TraesCS5B01G164100 chr5A 89.394 330 32 3 2323 2652 356106064 356106390 1.950000e-111 412.0
8 TraesCS5B01G164100 chr5A 74.648 284 52 16 2150 2423 678560876 678560603 1.030000e-19 108.0
9 TraesCS5B01G164100 chr3D 81.744 367 57 8 2302 2662 186605592 186605954 5.690000e-77 298.0
10 TraesCS5B01G164100 chr3D 78.873 284 51 9 2302 2581 243246152 243245874 1.660000e-42 183.0
11 TraesCS5B01G164100 chr6D 79.070 387 58 14 2299 2676 224494963 224494591 7.510000e-61 244.0
12 TraesCS5B01G164100 chr6D 78.030 132 24 5 2151 2282 419442666 419442792 8.070000e-11 78.7
13 TraesCS5B01G164100 chr4B 86.538 104 11 3 2361 2463 651871798 651871899 7.950000e-21 111.0
14 TraesCS5B01G164100 chr4B 85.577 104 12 3 2361 2463 651809561 651809662 3.700000e-19 106.0
15 TraesCS5B01G164100 chr1D 81.295 139 17 9 2146 2279 55429039 55429173 1.330000e-18 104.0
16 TraesCS5B01G164100 chr6B 82.500 80 10 3 2226 2303 339382893 339382970 1.750000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G164100 chr5B 304124113 304126829 2716 False 5018.000000 5018 100.000000 1 2717 1 chr5B.!!$F1 2716
1 TraesCS5B01G164100 chr5D 268516551 268519264 2713 False 947.000000 1866 88.257000 215 2662 3 chr5D.!!$F2 2447
2 TraesCS5B01G164100 chr5A 356103697 356106390 2693 False 913.333333 1855 90.064333 250 2652 3 chr5A.!!$F1 2402

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
192 193 0.102481 CGGACGTTTGAGGATCGGAT 59.898 55.0 0.0 0.0 38.61 4.18 F
415 421 0.179145 GGTCACATACACGGACGAGG 60.179 60.0 0.0 0.0 32.39 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1203 1223 0.839946 ACTTGGTGGTCAGTTGCTCT 59.160 50.0 0.00 0.00 0.00 4.09 R
2297 3104 0.601576 ACGATTTGTGCGGCTGTACA 60.602 50.0 12.89 12.89 39.05 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.732996 AGGAGTATGTTTTAAGTGTGTAGTGT 58.267 34.615 0.00 0.00 0.00 3.55
26 27 7.871463 AGGAGTATGTTTTAAGTGTGTAGTGTC 59.129 37.037 0.00 0.00 0.00 3.67
27 28 7.117379 GGAGTATGTTTTAAGTGTGTAGTGTCC 59.883 40.741 0.00 0.00 0.00 4.02
28 29 5.917541 ATGTTTTAAGTGTGTAGTGTCCG 57.082 39.130 0.00 0.00 0.00 4.79
29 30 4.757594 TGTTTTAAGTGTGTAGTGTCCGT 58.242 39.130 0.00 0.00 0.00 4.69
30 31 4.805192 TGTTTTAAGTGTGTAGTGTCCGTC 59.195 41.667 0.00 0.00 0.00 4.79
31 32 2.975410 TAAGTGTGTAGTGTCCGTCG 57.025 50.000 0.00 0.00 0.00 5.12
32 33 1.311859 AAGTGTGTAGTGTCCGTCGA 58.688 50.000 0.00 0.00 0.00 4.20
33 34 1.531423 AGTGTGTAGTGTCCGTCGAT 58.469 50.000 0.00 0.00 0.00 3.59
34 35 1.884579 AGTGTGTAGTGTCCGTCGATT 59.115 47.619 0.00 0.00 0.00 3.34
35 36 3.076621 AGTGTGTAGTGTCCGTCGATTA 58.923 45.455 0.00 0.00 0.00 1.75
36 37 3.503363 AGTGTGTAGTGTCCGTCGATTAA 59.497 43.478 0.00 0.00 0.00 1.40
37 38 3.605486 GTGTGTAGTGTCCGTCGATTAAC 59.395 47.826 0.00 0.00 0.00 2.01
38 39 3.503363 TGTGTAGTGTCCGTCGATTAACT 59.497 43.478 0.00 0.00 0.00 2.24
39 40 4.694982 TGTGTAGTGTCCGTCGATTAACTA 59.305 41.667 0.00 0.00 0.00 2.24
40 41 5.355071 TGTGTAGTGTCCGTCGATTAACTAT 59.645 40.000 0.00 0.00 0.00 2.12
41 42 5.680229 GTGTAGTGTCCGTCGATTAACTATG 59.320 44.000 0.00 0.00 0.00 2.23
42 43 4.303086 AGTGTCCGTCGATTAACTATGG 57.697 45.455 0.00 0.00 0.00 2.74
43 44 3.698040 AGTGTCCGTCGATTAACTATGGT 59.302 43.478 0.00 0.00 0.00 3.55
44 45 4.040376 GTGTCCGTCGATTAACTATGGTC 58.960 47.826 0.00 0.00 0.00 4.02
45 46 3.067180 TGTCCGTCGATTAACTATGGTCC 59.933 47.826 0.00 0.00 0.00 4.46
46 47 3.317430 GTCCGTCGATTAACTATGGTCCT 59.683 47.826 0.00 0.00 0.00 3.85
47 48 3.956199 TCCGTCGATTAACTATGGTCCTT 59.044 43.478 0.00 0.00 0.00 3.36
48 49 4.403432 TCCGTCGATTAACTATGGTCCTTT 59.597 41.667 0.00 0.00 0.00 3.11
49 50 5.105228 TCCGTCGATTAACTATGGTCCTTTT 60.105 40.000 0.00 0.00 0.00 2.27
50 51 5.006358 CCGTCGATTAACTATGGTCCTTTTG 59.994 44.000 0.00 0.00 0.00 2.44
51 52 5.579511 CGTCGATTAACTATGGTCCTTTTGT 59.420 40.000 0.00 0.00 0.00 2.83
52 53 6.237755 CGTCGATTAACTATGGTCCTTTTGTC 60.238 42.308 0.00 0.00 0.00 3.18
53 54 6.817140 GTCGATTAACTATGGTCCTTTTGTCT 59.183 38.462 0.00 0.00 0.00 3.41
54 55 6.816640 TCGATTAACTATGGTCCTTTTGTCTG 59.183 38.462 0.00 0.00 0.00 3.51
55 56 6.037172 CGATTAACTATGGTCCTTTTGTCTGG 59.963 42.308 0.00 0.00 0.00 3.86
56 57 3.073274 ACTATGGTCCTTTTGTCTGGC 57.927 47.619 0.00 0.00 0.00 4.85
57 58 2.009774 CTATGGTCCTTTTGTCTGGCG 58.990 52.381 0.00 0.00 0.00 5.69
58 59 0.400213 ATGGTCCTTTTGTCTGGCGA 59.600 50.000 0.00 0.00 0.00 5.54
59 60 0.400213 TGGTCCTTTTGTCTGGCGAT 59.600 50.000 0.00 0.00 0.00 4.58
60 61 0.804989 GGTCCTTTTGTCTGGCGATG 59.195 55.000 0.00 0.00 0.00 3.84
61 62 1.610624 GGTCCTTTTGTCTGGCGATGA 60.611 52.381 0.00 0.00 0.00 2.92
62 63 2.151202 GTCCTTTTGTCTGGCGATGAA 58.849 47.619 0.00 0.00 0.00 2.57
63 64 2.552315 GTCCTTTTGTCTGGCGATGAAA 59.448 45.455 0.00 0.00 0.00 2.69
64 65 3.191371 GTCCTTTTGTCTGGCGATGAAAT 59.809 43.478 0.00 0.00 0.00 2.17
65 66 4.394920 GTCCTTTTGTCTGGCGATGAAATA 59.605 41.667 0.00 0.00 0.00 1.40
66 67 4.635765 TCCTTTTGTCTGGCGATGAAATAG 59.364 41.667 0.00 0.00 0.00 1.73
67 68 4.396166 CCTTTTGTCTGGCGATGAAATAGT 59.604 41.667 0.00 0.00 0.00 2.12
68 69 4.944962 TTTGTCTGGCGATGAAATAGTG 57.055 40.909 0.00 0.00 0.00 2.74
69 70 3.885724 TGTCTGGCGATGAAATAGTGA 57.114 42.857 0.00 0.00 0.00 3.41
70 71 4.406648 TGTCTGGCGATGAAATAGTGAT 57.593 40.909 0.00 0.00 0.00 3.06
71 72 4.371786 TGTCTGGCGATGAAATAGTGATC 58.628 43.478 0.00 0.00 0.00 2.92
72 73 3.743396 GTCTGGCGATGAAATAGTGATCC 59.257 47.826 0.00 0.00 0.00 3.36
73 74 3.070018 CTGGCGATGAAATAGTGATCCC 58.930 50.000 0.00 0.00 0.00 3.85
74 75 2.437651 TGGCGATGAAATAGTGATCCCA 59.562 45.455 0.00 0.00 0.00 4.37
75 76 3.072915 TGGCGATGAAATAGTGATCCCAT 59.927 43.478 0.00 0.00 0.00 4.00
76 77 3.438087 GGCGATGAAATAGTGATCCCATG 59.562 47.826 0.00 0.00 0.00 3.66
77 78 4.318332 GCGATGAAATAGTGATCCCATGA 58.682 43.478 0.00 0.00 0.00 3.07
78 79 4.756642 GCGATGAAATAGTGATCCCATGAA 59.243 41.667 0.00 0.00 0.00 2.57
79 80 5.334414 GCGATGAAATAGTGATCCCATGAAC 60.334 44.000 0.00 0.00 0.00 3.18
80 81 5.994054 CGATGAAATAGTGATCCCATGAACT 59.006 40.000 0.00 0.00 0.00 3.01
81 82 6.073385 CGATGAAATAGTGATCCCATGAACTG 60.073 42.308 0.00 0.00 0.00 3.16
82 83 4.883585 TGAAATAGTGATCCCATGAACTGC 59.116 41.667 0.00 0.00 0.00 4.40
83 84 2.602257 TAGTGATCCCATGAACTGCG 57.398 50.000 0.00 0.00 0.00 5.18
84 85 0.615331 AGTGATCCCATGAACTGCGT 59.385 50.000 0.00 0.00 0.00 5.24
85 86 1.831106 AGTGATCCCATGAACTGCGTA 59.169 47.619 0.00 0.00 0.00 4.42
86 87 2.435805 AGTGATCCCATGAACTGCGTAT 59.564 45.455 0.00 0.00 0.00 3.06
87 88 3.118261 AGTGATCCCATGAACTGCGTATT 60.118 43.478 0.00 0.00 0.00 1.89
88 89 3.002656 GTGATCCCATGAACTGCGTATTG 59.997 47.826 0.00 0.00 0.00 1.90
89 90 3.118445 TGATCCCATGAACTGCGTATTGA 60.118 43.478 0.00 0.00 0.00 2.57
90 91 3.558931 TCCCATGAACTGCGTATTGAT 57.441 42.857 0.00 0.00 0.00 2.57
91 92 3.884895 TCCCATGAACTGCGTATTGATT 58.115 40.909 0.00 0.00 0.00 2.57
92 93 3.627123 TCCCATGAACTGCGTATTGATTG 59.373 43.478 0.00 0.00 0.00 2.67
93 94 3.378112 CCCATGAACTGCGTATTGATTGT 59.622 43.478 0.00 0.00 0.00 2.71
94 95 4.345288 CCATGAACTGCGTATTGATTGTG 58.655 43.478 0.00 0.00 0.00 3.33
95 96 4.142622 CCATGAACTGCGTATTGATTGTGT 60.143 41.667 0.00 0.00 0.00 3.72
96 97 5.393124 CATGAACTGCGTATTGATTGTGTT 58.607 37.500 0.00 0.00 0.00 3.32
97 98 5.431420 TGAACTGCGTATTGATTGTGTTT 57.569 34.783 0.00 0.00 0.00 2.83
98 99 6.546972 TGAACTGCGTATTGATTGTGTTTA 57.453 33.333 0.00 0.00 0.00 2.01
99 100 7.139896 TGAACTGCGTATTGATTGTGTTTAT 57.860 32.000 0.00 0.00 0.00 1.40
100 101 8.257830 TGAACTGCGTATTGATTGTGTTTATA 57.742 30.769 0.00 0.00 0.00 0.98
101 102 8.172484 TGAACTGCGTATTGATTGTGTTTATAC 58.828 33.333 0.00 0.00 0.00 1.47
102 103 6.701937 ACTGCGTATTGATTGTGTTTATACG 58.298 36.000 0.00 0.00 43.99 3.06
103 104 6.311935 ACTGCGTATTGATTGTGTTTATACGT 59.688 34.615 12.62 0.00 43.42 3.57
104 105 7.488792 ACTGCGTATTGATTGTGTTTATACGTA 59.511 33.333 0.00 0.00 43.42 3.57
105 106 7.833539 TGCGTATTGATTGTGTTTATACGTAG 58.166 34.615 0.08 0.00 43.42 3.51
106 107 6.784227 GCGTATTGATTGTGTTTATACGTAGC 59.216 38.462 0.08 0.00 43.42 3.58
107 108 6.993930 CGTATTGATTGTGTTTATACGTAGCG 59.006 38.462 0.08 0.00 39.22 4.26
108 109 6.897259 ATTGATTGTGTTTATACGTAGCGT 57.103 33.333 0.08 0.00 44.35 5.07
109 110 6.709145 TTGATTGTGTTTATACGTAGCGTT 57.291 33.333 0.08 0.00 41.54 4.84
110 111 6.085121 TGATTGTGTTTATACGTAGCGTTG 57.915 37.500 0.08 0.00 41.54 4.10
111 112 3.976468 TGTGTTTATACGTAGCGTTGC 57.024 42.857 0.08 0.00 41.54 4.17
112 113 3.315418 TGTGTTTATACGTAGCGTTGCA 58.685 40.909 0.08 0.00 41.54 4.08
113 114 3.927758 TGTGTTTATACGTAGCGTTGCAT 59.072 39.130 0.08 0.00 41.54 3.96
114 115 4.201637 TGTGTTTATACGTAGCGTTGCATG 60.202 41.667 0.08 0.00 41.54 4.06
115 116 3.927758 TGTTTATACGTAGCGTTGCATGT 59.072 39.130 0.08 0.00 41.54 3.21
116 117 4.201637 TGTTTATACGTAGCGTTGCATGTG 60.202 41.667 0.08 0.00 41.54 3.21
117 118 2.004583 ATACGTAGCGTTGCATGTGT 57.995 45.000 0.08 0.00 41.54 3.72
118 119 1.785768 TACGTAGCGTTGCATGTGTT 58.214 45.000 0.00 0.00 41.54 3.32
119 120 0.234625 ACGTAGCGTTGCATGTGTTG 59.765 50.000 0.00 0.00 36.35 3.33
120 121 3.627960 ACGTAGCGTTGCATGTGTTGC 62.628 52.381 0.00 0.00 41.66 4.17
131 132 0.686224 ATGTGTTGCATGGGTTTGGG 59.314 50.000 0.00 0.00 36.26 4.12
132 133 0.689080 TGTGTTGCATGGGTTTGGGT 60.689 50.000 0.00 0.00 0.00 4.51
133 134 0.467804 GTGTTGCATGGGTTTGGGTT 59.532 50.000 0.00 0.00 0.00 4.11
134 135 1.134250 GTGTTGCATGGGTTTGGGTTT 60.134 47.619 0.00 0.00 0.00 3.27
135 136 1.561542 TGTTGCATGGGTTTGGGTTTT 59.438 42.857 0.00 0.00 0.00 2.43
136 137 2.771943 TGTTGCATGGGTTTGGGTTTTA 59.228 40.909 0.00 0.00 0.00 1.52
137 138 3.199946 TGTTGCATGGGTTTGGGTTTTAA 59.800 39.130 0.00 0.00 0.00 1.52
138 139 4.200092 GTTGCATGGGTTTGGGTTTTAAA 58.800 39.130 0.00 0.00 0.00 1.52
139 140 4.713792 TGCATGGGTTTGGGTTTTAAAT 57.286 36.364 0.00 0.00 0.00 1.40
140 141 5.825593 TGCATGGGTTTGGGTTTTAAATA 57.174 34.783 0.00 0.00 0.00 1.40
141 142 6.380079 TGCATGGGTTTGGGTTTTAAATAT 57.620 33.333 0.00 0.00 0.00 1.28
142 143 6.176183 TGCATGGGTTTGGGTTTTAAATATG 58.824 36.000 0.00 0.00 0.00 1.78
143 144 6.013379 TGCATGGGTTTGGGTTTTAAATATGA 60.013 34.615 0.00 0.00 0.00 2.15
144 145 6.538381 GCATGGGTTTGGGTTTTAAATATGAG 59.462 38.462 0.00 0.00 0.00 2.90
145 146 7.580495 GCATGGGTTTGGGTTTTAAATATGAGA 60.580 37.037 0.00 0.00 0.00 3.27
146 147 7.475137 TGGGTTTGGGTTTTAAATATGAGAG 57.525 36.000 0.00 0.00 0.00 3.20
147 148 7.242359 TGGGTTTGGGTTTTAAATATGAGAGA 58.758 34.615 0.00 0.00 0.00 3.10
148 149 7.177744 TGGGTTTGGGTTTTAAATATGAGAGAC 59.822 37.037 0.00 0.00 0.00 3.36
149 150 7.248437 GGTTTGGGTTTTAAATATGAGAGACG 58.752 38.462 0.00 0.00 0.00 4.18
150 151 6.431198 TTGGGTTTTAAATATGAGAGACGC 57.569 37.500 0.00 0.00 0.00 5.19
151 152 4.569162 TGGGTTTTAAATATGAGAGACGCG 59.431 41.667 3.53 3.53 0.00 6.01
152 153 4.025145 GGGTTTTAAATATGAGAGACGCGG 60.025 45.833 12.47 0.00 0.00 6.46
153 154 4.807304 GGTTTTAAATATGAGAGACGCGGA 59.193 41.667 12.47 0.00 0.00 5.54
154 155 5.465724 GGTTTTAAATATGAGAGACGCGGAT 59.534 40.000 12.47 0.00 0.00 4.18
155 156 6.355638 GTTTTAAATATGAGAGACGCGGATG 58.644 40.000 12.47 0.00 0.00 3.51
156 157 3.735237 AAATATGAGAGACGCGGATGT 57.265 42.857 12.47 0.00 0.00 3.06
157 158 2.713895 ATATGAGAGACGCGGATGTG 57.286 50.000 12.47 0.00 0.00 3.21
158 159 1.675552 TATGAGAGACGCGGATGTGA 58.324 50.000 12.47 0.00 0.00 3.58
159 160 0.383590 ATGAGAGACGCGGATGTGAG 59.616 55.000 12.47 0.00 0.00 3.51
160 161 0.676782 TGAGAGACGCGGATGTGAGA 60.677 55.000 12.47 0.00 0.00 3.27
161 162 0.452184 GAGAGACGCGGATGTGAGAA 59.548 55.000 12.47 0.00 0.00 2.87
162 163 0.171455 AGAGACGCGGATGTGAGAAC 59.829 55.000 12.47 0.00 0.00 3.01
163 164 0.171455 GAGACGCGGATGTGAGAACT 59.829 55.000 12.47 0.00 0.00 3.01
164 165 1.400846 GAGACGCGGATGTGAGAACTA 59.599 52.381 12.47 0.00 0.00 2.24
165 166 1.402259 AGACGCGGATGTGAGAACTAG 59.598 52.381 12.47 0.00 0.00 2.57
166 167 0.179134 ACGCGGATGTGAGAACTAGC 60.179 55.000 12.47 0.00 0.00 3.42
167 168 0.179137 CGCGGATGTGAGAACTAGCA 60.179 55.000 0.00 0.00 0.00 3.49
168 169 1.536922 CGCGGATGTGAGAACTAGCAT 60.537 52.381 0.00 0.00 0.00 3.79
169 170 1.863454 GCGGATGTGAGAACTAGCATG 59.137 52.381 0.00 0.00 0.00 4.06
170 171 2.739932 GCGGATGTGAGAACTAGCATGT 60.740 50.000 0.00 0.00 0.00 3.21
171 172 2.862536 CGGATGTGAGAACTAGCATGTG 59.137 50.000 0.00 0.00 0.00 3.21
172 173 3.677148 CGGATGTGAGAACTAGCATGTGT 60.677 47.826 0.00 0.00 0.00 3.72
173 174 3.868077 GGATGTGAGAACTAGCATGTGTC 59.132 47.826 0.00 0.00 0.00 3.67
174 175 2.946564 TGTGAGAACTAGCATGTGTCG 58.053 47.619 0.00 0.00 0.00 4.35
175 176 2.263077 GTGAGAACTAGCATGTGTCGG 58.737 52.381 0.00 0.00 0.00 4.79
176 177 2.094700 GTGAGAACTAGCATGTGTCGGA 60.095 50.000 0.00 0.00 0.00 4.55
177 178 2.094700 TGAGAACTAGCATGTGTCGGAC 60.095 50.000 0.00 0.00 0.00 4.79
178 179 1.135373 AGAACTAGCATGTGTCGGACG 60.135 52.381 3.34 0.00 0.00 4.79
179 180 0.601558 AACTAGCATGTGTCGGACGT 59.398 50.000 3.34 0.00 0.00 4.34
180 181 0.601558 ACTAGCATGTGTCGGACGTT 59.398 50.000 3.34 0.00 0.00 3.99
181 182 1.000506 ACTAGCATGTGTCGGACGTTT 59.999 47.619 3.34 0.00 0.00 3.60
182 183 1.390123 CTAGCATGTGTCGGACGTTTG 59.610 52.381 3.34 2.05 0.00 2.93
183 184 0.249699 AGCATGTGTCGGACGTTTGA 60.250 50.000 3.34 0.00 0.00 2.69
184 185 0.163788 GCATGTGTCGGACGTTTGAG 59.836 55.000 3.34 0.00 0.00 3.02
185 186 0.790207 CATGTGTCGGACGTTTGAGG 59.210 55.000 3.34 0.00 0.00 3.86
186 187 0.677288 ATGTGTCGGACGTTTGAGGA 59.323 50.000 3.34 0.00 0.00 3.71
187 188 0.677288 TGTGTCGGACGTTTGAGGAT 59.323 50.000 3.34 0.00 0.00 3.24
188 189 1.336517 TGTGTCGGACGTTTGAGGATC 60.337 52.381 3.34 0.00 0.00 3.36
189 190 0.109458 TGTCGGACGTTTGAGGATCG 60.109 55.000 3.34 0.00 38.61 3.69
190 191 0.801067 GTCGGACGTTTGAGGATCGG 60.801 60.000 0.00 0.00 38.61 4.18
191 192 0.961857 TCGGACGTTTGAGGATCGGA 60.962 55.000 0.00 0.00 38.61 4.55
192 193 0.102481 CGGACGTTTGAGGATCGGAT 59.898 55.000 0.00 0.00 38.61 4.18
193 194 1.470979 CGGACGTTTGAGGATCGGATT 60.471 52.381 0.00 0.00 38.61 3.01
194 195 2.629051 GGACGTTTGAGGATCGGATTT 58.371 47.619 0.00 0.00 38.61 2.17
195 196 2.351726 GGACGTTTGAGGATCGGATTTG 59.648 50.000 0.00 0.00 38.61 2.32
196 197 1.737793 ACGTTTGAGGATCGGATTTGC 59.262 47.619 0.00 0.00 38.61 3.68
197 198 1.064060 CGTTTGAGGATCGGATTTGCC 59.936 52.381 0.00 0.00 38.61 4.52
198 199 2.091541 GTTTGAGGATCGGATTTGCCA 58.908 47.619 0.00 0.00 38.61 4.92
199 200 2.491693 GTTTGAGGATCGGATTTGCCAA 59.508 45.455 0.00 0.00 38.61 4.52
200 201 2.734755 TGAGGATCGGATTTGCCAAT 57.265 45.000 0.00 0.00 38.61 3.16
201 202 3.017048 TGAGGATCGGATTTGCCAATT 57.983 42.857 0.00 0.00 38.61 2.32
202 203 2.951642 TGAGGATCGGATTTGCCAATTC 59.048 45.455 0.00 0.00 38.61 2.17
203 204 2.294512 GAGGATCGGATTTGCCAATTCC 59.705 50.000 8.07 8.07 35.94 3.01
204 205 2.031120 GGATCGGATTTGCCAATTCCA 58.969 47.619 16.32 6.20 35.94 3.53
205 206 2.430332 GGATCGGATTTGCCAATTCCAA 59.570 45.455 16.32 0.77 35.94 3.53
206 207 3.070015 GGATCGGATTTGCCAATTCCAAT 59.930 43.478 16.32 5.50 35.94 3.16
207 208 4.443315 GGATCGGATTTGCCAATTCCAATT 60.443 41.667 16.32 2.80 35.94 2.32
208 209 5.221422 GGATCGGATTTGCCAATTCCAATTA 60.221 40.000 16.32 2.03 35.94 1.40
209 210 5.867903 TCGGATTTGCCAATTCCAATTAT 57.132 34.783 16.32 0.00 35.94 1.28
210 211 5.599732 TCGGATTTGCCAATTCCAATTATG 58.400 37.500 16.32 2.01 35.94 1.90
211 212 4.751098 CGGATTTGCCAATTCCAATTATGG 59.249 41.667 16.32 0.00 42.12 2.74
212 213 5.453057 CGGATTTGCCAATTCCAATTATGGA 60.453 40.000 16.32 0.00 45.61 3.41
213 214 6.536447 GGATTTGCCAATTCCAATTATGGAT 58.464 36.000 12.38 0.00 45.58 3.41
239 240 4.201851 GCTGATGCGTGATTGTAATCAGTT 60.202 41.667 7.51 0.00 45.38 3.16
246 247 5.382303 CGTGATTGTAATCAGTTGGTTGAC 58.618 41.667 7.51 0.00 45.38 3.18
247 248 5.382303 GTGATTGTAATCAGTTGGTTGACG 58.618 41.667 7.51 0.00 45.38 4.35
248 249 5.049680 GTGATTGTAATCAGTTGGTTGACGT 60.050 40.000 7.51 0.00 45.38 4.34
408 410 0.459411 TCGCCATGGTCACATACACG 60.459 55.000 14.67 4.90 34.99 4.49
409 411 1.428370 CGCCATGGTCACATACACGG 61.428 60.000 14.67 0.00 34.99 4.94
411 413 1.651987 CCATGGTCACATACACGGAC 58.348 55.000 2.57 0.00 34.99 4.79
415 421 0.179145 GGTCACATACACGGACGAGG 60.179 60.000 0.00 0.00 32.39 4.63
585 592 0.737367 TCTGCGCATCTCCACTTTCG 60.737 55.000 12.24 0.00 0.00 3.46
597 604 1.374758 ACTTTCGCTCGCCTCCTTG 60.375 57.895 0.00 0.00 0.00 3.61
598 605 1.374758 CTTTCGCTCGCCTCCTTGT 60.375 57.895 0.00 0.00 0.00 3.16
599 606 1.630244 CTTTCGCTCGCCTCCTTGTG 61.630 60.000 0.00 0.00 0.00 3.33
600 607 2.094757 TTTCGCTCGCCTCCTTGTGA 62.095 55.000 0.00 0.00 0.00 3.58
601 608 2.048222 CGCTCGCCTCCTTGTGAA 60.048 61.111 0.00 0.00 0.00 3.18
602 609 2.097038 CGCTCGCCTCCTTGTGAAG 61.097 63.158 0.00 0.00 0.00 3.02
606 613 4.625800 GCCTCCTTGTGAAGCGAT 57.374 55.556 0.00 0.00 0.00 4.58
630 638 2.009774 CCCACCAAAATAGAGCTCGTG 58.990 52.381 8.37 8.29 0.00 4.35
641 649 2.358615 GCTCGTGATGCACCACCA 60.359 61.111 5.37 0.00 33.67 4.17
642 650 2.680913 GCTCGTGATGCACCACCAC 61.681 63.158 5.37 3.07 33.67 4.16
643 651 1.301637 CTCGTGATGCACCACCACA 60.302 57.895 5.37 0.00 33.67 4.17
644 652 1.568612 CTCGTGATGCACCACCACAC 61.569 60.000 5.37 1.22 33.67 3.82
645 653 2.616330 CGTGATGCACCACCACACC 61.616 63.158 5.37 0.00 33.67 4.16
646 654 1.528076 GTGATGCACCACCACACCA 60.528 57.895 0.00 0.00 0.00 4.17
647 655 1.528076 TGATGCACCACCACACCAC 60.528 57.895 0.00 0.00 0.00 4.16
695 704 0.895530 AAGGCTGCAACGCTAGAGTA 59.104 50.000 0.00 0.00 0.00 2.59
696 705 0.457851 AGGCTGCAACGCTAGAGTAG 59.542 55.000 0.00 0.00 0.00 2.57
697 706 0.456221 GGCTGCAACGCTAGAGTAGA 59.544 55.000 0.00 0.00 0.00 2.59
698 707 1.535015 GGCTGCAACGCTAGAGTAGAG 60.535 57.143 0.00 0.00 0.00 2.43
699 708 1.833860 CTGCAACGCTAGAGTAGAGC 58.166 55.000 0.00 5.68 36.54 4.09
700 709 0.456221 TGCAACGCTAGAGTAGAGCC 59.544 55.000 13.28 0.00 36.53 4.70
801 810 4.142816 GCAGTGAGTGTGTGTTATCCATTC 60.143 45.833 0.00 0.00 0.00 2.67
802 811 5.240891 CAGTGAGTGTGTGTTATCCATTCT 58.759 41.667 0.00 0.00 0.00 2.40
803 812 6.398095 CAGTGAGTGTGTGTTATCCATTCTA 58.602 40.000 0.00 0.00 0.00 2.10
804 813 6.311445 CAGTGAGTGTGTGTTATCCATTCTAC 59.689 42.308 0.00 0.00 0.00 2.59
805 814 6.211584 AGTGAGTGTGTGTTATCCATTCTACT 59.788 38.462 0.00 0.00 0.00 2.57
806 815 7.396339 AGTGAGTGTGTGTTATCCATTCTACTA 59.604 37.037 0.00 0.00 0.00 1.82
808 817 8.758829 TGAGTGTGTGTTATCCATTCTACTAAT 58.241 33.333 0.00 0.00 0.00 1.73
832 841 4.790810 TCTACTACTAATCACGTGAGCG 57.209 45.455 24.41 15.85 44.93 5.03
851 860 3.177249 GGCTAACACCGTCGTCGC 61.177 66.667 0.00 0.00 35.54 5.19
852 861 2.429571 GCTAACACCGTCGTCGCA 60.430 61.111 0.00 0.00 35.54 5.10
853 862 2.713894 GCTAACACCGTCGTCGCAC 61.714 63.158 0.00 0.00 35.54 5.34
854 863 2.050168 TAACACCGTCGTCGCACC 60.050 61.111 0.00 0.00 35.54 5.01
855 864 3.877612 TAACACCGTCGTCGCACCG 62.878 63.158 0.00 0.00 35.54 4.94
857 866 4.388080 CACCGTCGTCGCACCGTA 62.388 66.667 0.00 0.00 35.54 4.02
862 871 4.088762 TCGTCGCACCGTACGTCC 62.089 66.667 15.21 0.75 39.99 4.79
870 879 3.140141 CCGTACGTCCCGGCCTAA 61.140 66.667 15.21 0.00 38.85 2.69
871 880 2.410469 CGTACGTCCCGGCCTAAG 59.590 66.667 7.22 0.00 0.00 2.18
872 881 2.105729 GTACGTCCCGGCCTAAGC 59.894 66.667 0.00 0.00 38.76 3.09
894 903 2.672996 CCGGCCTTGTGTTCCTGG 60.673 66.667 0.00 0.00 0.00 4.45
985 994 2.072654 CGCGTGCGCCTAAACAAAC 61.073 57.895 4.18 0.00 37.98 2.93
986 995 1.009449 GCGTGCGCCTAAACAAACA 60.009 52.632 4.18 0.00 34.56 2.83
987 996 0.592754 GCGTGCGCCTAAACAAACAA 60.593 50.000 4.18 0.00 34.56 2.83
988 997 1.828832 CGTGCGCCTAAACAAACAAA 58.171 45.000 4.18 0.00 0.00 2.83
998 1007 7.070798 CGCCTAAACAAACAAAGTCGTTAATA 58.929 34.615 0.00 0.00 0.00 0.98
999 1008 7.267600 CGCCTAAACAAACAAAGTCGTTAATAG 59.732 37.037 0.00 0.00 0.00 1.73
1000 1009 8.284693 GCCTAAACAAACAAAGTCGTTAATAGA 58.715 33.333 0.00 0.00 0.00 1.98
1004 1013 9.659830 AAACAAACAAAGTCGTTAATAGATGAC 57.340 29.630 0.00 0.00 36.11 3.06
1005 1014 8.603242 ACAAACAAAGTCGTTAATAGATGACT 57.397 30.769 0.00 0.00 45.39 3.41
1006 1015 8.709646 ACAAACAAAGTCGTTAATAGATGACTC 58.290 33.333 0.70 0.00 43.30 3.36
1007 1016 8.926710 CAAACAAAGTCGTTAATAGATGACTCT 58.073 33.333 0.70 0.00 43.30 3.24
1008 1017 8.467402 AACAAAGTCGTTAATAGATGACTCTG 57.533 34.615 0.70 0.54 43.30 3.35
1011 1020 6.137794 AGTCGTTAATAGATGACTCTGTGG 57.862 41.667 0.00 0.00 40.92 4.17
1016 1025 7.121611 TCGTTAATAGATGACTCTGTGGTTACA 59.878 37.037 0.00 0.00 32.66 2.41
1039 1048 1.538950 CAGGAGCAACAGCTTTCTTCC 59.461 52.381 0.00 0.00 39.10 3.46
1040 1049 0.884514 GGAGCAACAGCTTTCTTCCC 59.115 55.000 0.00 0.00 39.10 3.97
1041 1050 1.546548 GGAGCAACAGCTTTCTTCCCT 60.547 52.381 0.00 0.00 39.10 4.20
1042 1051 1.809547 GAGCAACAGCTTTCTTCCCTC 59.190 52.381 0.00 0.00 39.10 4.30
1043 1052 0.519077 GCAACAGCTTTCTTCCCTCG 59.481 55.000 0.00 0.00 0.00 4.63
1044 1053 1.878102 GCAACAGCTTTCTTCCCTCGA 60.878 52.381 0.00 0.00 0.00 4.04
1045 1054 2.704572 CAACAGCTTTCTTCCCTCGAT 58.295 47.619 0.00 0.00 0.00 3.59
1047 1056 3.425162 ACAGCTTTCTTCCCTCGATTT 57.575 42.857 0.00 0.00 0.00 2.17
1131 1148 3.917760 CGTCCGCTCTCCCCCATC 61.918 72.222 0.00 0.00 0.00 3.51
1132 1149 2.444895 GTCCGCTCTCCCCCATCT 60.445 66.667 0.00 0.00 0.00 2.90
1133 1150 2.123251 TCCGCTCTCCCCCATCTC 60.123 66.667 0.00 0.00 0.00 2.75
1134 1151 2.123077 CCGCTCTCCCCCATCTCT 60.123 66.667 0.00 0.00 0.00 3.10
1135 1152 2.206536 CCGCTCTCCCCCATCTCTC 61.207 68.421 0.00 0.00 0.00 3.20
1136 1153 1.152567 CGCTCTCCCCCATCTCTCT 60.153 63.158 0.00 0.00 0.00 3.10
1137 1154 1.178534 CGCTCTCCCCCATCTCTCTC 61.179 65.000 0.00 0.00 0.00 3.20
1166 1183 6.644347 TCTCTCTCTCTCTCTTCTTCTTCTC 58.356 44.000 0.00 0.00 0.00 2.87
1237 1257 0.321564 CAAGTTCTCGGGCATGGACA 60.322 55.000 0.00 0.00 0.00 4.02
1683 1709 4.428922 CGTGACGCGTCGTACGGA 62.429 66.667 32.34 15.79 42.82 4.69
1720 1746 3.083349 TCCTGTCCGGCTGATGGG 61.083 66.667 0.00 0.00 0.00 4.00
1771 1804 1.290009 GCGCCATGGCTTTTGTCTT 59.710 52.632 33.07 0.00 39.32 3.01
1931 2335 5.053145 GCACTCGATGATTGTAAAGAGGAT 58.947 41.667 0.00 0.00 0.00 3.24
1978 2382 3.131223 GTGAGAATCTGATTCCCTGTCGA 59.869 47.826 23.12 6.23 40.13 4.20
2048 2452 4.706842 TCTTCCTTGGTCTTTGCTACTT 57.293 40.909 0.00 0.00 0.00 2.24
2050 2454 3.040147 TCCTTGGTCTTTGCTACTTCG 57.960 47.619 0.00 0.00 0.00 3.79
2063 2867 6.403333 TTGCTACTTCGCTATTTTAGTGTG 57.597 37.500 0.00 0.00 37.55 3.82
2089 2893 6.360618 AAGAAGTCATCTTCAAGGTTCAGTT 58.639 36.000 9.99 0.00 45.42 3.16
2091 2895 7.913674 GAAGTCATCTTCAAGGTTCAGTTAT 57.086 36.000 3.52 0.00 46.50 1.89
2113 2917 5.298197 TCAAGAGAGTACAAGATCACGTC 57.702 43.478 0.00 0.00 0.00 4.34
2114 2918 5.004448 TCAAGAGAGTACAAGATCACGTCT 58.996 41.667 0.00 0.00 39.43 4.18
2123 2928 5.078411 ACAAGATCACGTCTTAGAGCATT 57.922 39.130 0.00 0.00 45.35 3.56
2136 2941 9.214953 CGTCTTAGAGCATTTTCAATAAATGAC 57.785 33.333 12.91 6.95 39.36 3.06
2139 2944 5.030295 AGAGCATTTTCAATAAATGACGCG 58.970 37.500 3.53 3.53 39.36 6.01
2143 2948 6.197096 AGCATTTTCAATAAATGACGCGAATC 59.803 34.615 15.93 0.00 39.36 2.52
2146 2951 4.794248 TCAATAAATGACGCGAATCTGG 57.206 40.909 15.93 0.00 31.50 3.86
2215 3021 9.706691 AAAAAGAACGAACTCTAACAGATGATA 57.293 29.630 0.00 0.00 0.00 2.15
2216 3022 9.706691 AAAAGAACGAACTCTAACAGATGATAA 57.293 29.630 0.00 0.00 0.00 1.75
2275 3082 8.746530 AGATGATGCAAAGTGAAGATGTAAAAT 58.253 29.630 0.00 0.00 0.00 1.82
2284 3091 1.846007 AGATGTAAAATTGGCCGCCA 58.154 45.000 8.43 8.43 0.00 5.69
2310 3117 2.030412 CCTGTGTACAGCCGCACA 59.970 61.111 6.50 0.00 42.47 4.57
2311 3118 1.596752 CCTGTGTACAGCCGCACAA 60.597 57.895 6.50 0.00 43.81 3.33
2316 3123 0.601576 TGTACAGCCGCACAAATCGT 60.602 50.000 0.00 0.00 0.00 3.73
2321 3128 2.350498 ACAGCCGCACAAATCGTAATAC 59.650 45.455 0.00 0.00 0.00 1.89
2325 3132 3.425094 GCCGCACAAATCGTAATACAACA 60.425 43.478 0.00 0.00 0.00 3.33
2341 3148 4.301637 ACAACATCCCGAAAACAACTTC 57.698 40.909 0.00 0.00 0.00 3.01
2359 3166 7.674564 ACAACTTCAAAATTTTCACATGTTCG 58.325 30.769 0.00 0.00 0.00 3.95
2407 3214 9.602568 TTCATCAAATCCACAATATCAAAATGG 57.397 29.630 0.00 0.00 0.00 3.16
2449 3256 7.795431 ATTATTGCACAATAGAACAAACACG 57.205 32.000 3.50 0.00 35.02 4.49
2465 3272 3.308438 ACACGTAATGAAACTAGGCGT 57.692 42.857 0.00 0.00 0.00 5.68
2466 3273 3.656559 ACACGTAATGAAACTAGGCGTT 58.343 40.909 0.00 0.00 37.47 4.84
2485 3292 4.389687 GCGTTTCTTTCATCATGCCATTTT 59.610 37.500 0.00 0.00 0.00 1.82
2506 3313 9.880157 CATTTTCAATACTCCATCAAATCCTTT 57.120 29.630 0.00 0.00 0.00 3.11
2522 3329 3.210227 TCCTTTTGAAGTTGATCGTGCA 58.790 40.909 0.00 0.00 0.00 4.57
2523 3330 3.820467 TCCTTTTGAAGTTGATCGTGCAT 59.180 39.130 0.00 0.00 0.00 3.96
2524 3331 3.916172 CCTTTTGAAGTTGATCGTGCATG 59.084 43.478 0.00 0.00 0.00 4.06
2527 3334 2.765122 TGAAGTTGATCGTGCATGTCA 58.235 42.857 5.68 6.47 0.00 3.58
2534 3341 2.232208 TGATCGTGCATGTCAGAGTCTT 59.768 45.455 5.68 0.00 0.00 3.01
2594 3401 4.629200 GCTCCTATTTTCTCATCGGCATAG 59.371 45.833 0.00 0.00 0.00 2.23
2624 3431 3.672808 CCCATCAGATCATAGAAGGTGC 58.327 50.000 0.00 0.00 0.00 5.01
2635 3442 8.854117 AGATCATAGAAGGTGCAATTTAAATCC 58.146 33.333 0.10 0.00 0.00 3.01
2640 3447 6.012745 AGAAGGTGCAATTTAAATCCTGTCT 58.987 36.000 0.10 6.79 0.00 3.41
2655 3462 3.994392 TCCTGTCTACGCTCATTTTCAAC 59.006 43.478 0.00 0.00 0.00 3.18
2656 3463 3.745975 CCTGTCTACGCTCATTTTCAACA 59.254 43.478 0.00 0.00 0.00 3.33
2662 3469 7.333174 TGTCTACGCTCATTTTCAACAATCATA 59.667 33.333 0.00 0.00 0.00 2.15
2663 3470 8.338259 GTCTACGCTCATTTTCAACAATCATAT 58.662 33.333 0.00 0.00 0.00 1.78
2664 3471 8.892723 TCTACGCTCATTTTCAACAATCATATT 58.107 29.630 0.00 0.00 0.00 1.28
2665 3472 9.507280 CTACGCTCATTTTCAACAATCATATTT 57.493 29.630 0.00 0.00 0.00 1.40
2666 3473 8.176814 ACGCTCATTTTCAACAATCATATTTG 57.823 30.769 0.00 0.00 0.00 2.32
2667 3474 7.276218 ACGCTCATTTTCAACAATCATATTTGG 59.724 33.333 0.00 0.00 0.00 3.28
2668 3475 7.404203 GCTCATTTTCAACAATCATATTTGGC 58.596 34.615 0.00 0.00 0.00 4.52
2669 3476 7.522901 TCATTTTCAACAATCATATTTGGCG 57.477 32.000 0.00 0.00 0.00 5.69
2670 3477 7.318893 TCATTTTCAACAATCATATTTGGCGA 58.681 30.769 0.00 0.00 0.00 5.54
2671 3478 6.942886 TTTTCAACAATCATATTTGGCGAC 57.057 33.333 0.00 0.00 0.00 5.19
2672 3479 5.895636 TTCAACAATCATATTTGGCGACT 57.104 34.783 0.00 0.00 0.00 4.18
2673 3480 5.233957 TCAACAATCATATTTGGCGACTG 57.766 39.130 0.00 0.00 0.00 3.51
2674 3481 4.940654 TCAACAATCATATTTGGCGACTGA 59.059 37.500 0.00 0.00 0.00 3.41
2675 3482 5.589855 TCAACAATCATATTTGGCGACTGAT 59.410 36.000 0.00 0.00 0.00 2.90
2676 3483 5.428496 ACAATCATATTTGGCGACTGATG 57.572 39.130 0.00 0.00 0.00 3.07
2677 3484 4.276678 ACAATCATATTTGGCGACTGATGG 59.723 41.667 0.00 0.00 0.00 3.51
2678 3485 2.849942 TCATATTTGGCGACTGATGGG 58.150 47.619 0.00 0.00 0.00 4.00
2679 3486 1.267806 CATATTTGGCGACTGATGGGC 59.732 52.381 0.00 0.00 0.00 5.36
2701 3508 3.605664 GTGCGCTGGCCCAAAGTT 61.606 61.111 9.73 0.00 38.85 2.66
2702 3509 2.837291 TGCGCTGGCCCAAAGTTT 60.837 55.556 9.73 0.00 38.85 2.66
2703 3510 2.049156 GCGCTGGCCCAAAGTTTC 60.049 61.111 0.00 0.00 0.00 2.78
2704 3511 2.255252 CGCTGGCCCAAAGTTTCG 59.745 61.111 0.00 0.00 0.00 3.46
2705 3512 2.650778 GCTGGCCCAAAGTTTCGG 59.349 61.111 0.00 0.00 0.00 4.30
2706 3513 2.200337 GCTGGCCCAAAGTTTCGGT 61.200 57.895 0.00 0.00 0.00 4.69
2707 3514 1.956802 CTGGCCCAAAGTTTCGGTC 59.043 57.895 0.00 0.00 0.00 4.79
2708 3515 1.852067 CTGGCCCAAAGTTTCGGTCG 61.852 60.000 0.00 0.00 0.00 4.79
2709 3516 2.622962 GGCCCAAAGTTTCGGTCGG 61.623 63.158 1.01 0.00 0.00 4.79
2710 3517 1.895231 GCCCAAAGTTTCGGTCGGT 60.895 57.895 1.01 0.00 0.00 4.69
2711 3518 1.848932 GCCCAAAGTTTCGGTCGGTC 61.849 60.000 1.01 0.00 0.00 4.79
2712 3519 1.562575 CCCAAAGTTTCGGTCGGTCG 61.563 60.000 0.00 0.00 0.00 4.79
2713 3520 0.877213 CCAAAGTTTCGGTCGGTCGT 60.877 55.000 0.00 0.00 0.00 4.34
2714 3521 0.231279 CAAAGTTTCGGTCGGTCGTG 59.769 55.000 0.00 0.00 0.00 4.35
2715 3522 0.179103 AAAGTTTCGGTCGGTCGTGT 60.179 50.000 0.00 0.00 0.00 4.49
2716 3523 0.595825 AAGTTTCGGTCGGTCGTGTC 60.596 55.000 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.732996 ACACTACACACTTAAAACATACTCCT 58.267 34.615 0.00 0.00 0.00 3.69
1 2 7.117379 GGACACTACACACTTAAAACATACTCC 59.883 40.741 0.00 0.00 0.00 3.85
2 3 7.148853 CGGACACTACACACTTAAAACATACTC 60.149 40.741 0.00 0.00 0.00 2.59
3 4 6.643770 CGGACACTACACACTTAAAACATACT 59.356 38.462 0.00 0.00 0.00 2.12
4 5 6.421801 ACGGACACTACACACTTAAAACATAC 59.578 38.462 0.00 0.00 0.00 2.39
5 6 6.514947 ACGGACACTACACACTTAAAACATA 58.485 36.000 0.00 0.00 0.00 2.29
6 7 5.362263 ACGGACACTACACACTTAAAACAT 58.638 37.500 0.00 0.00 0.00 2.71
7 8 4.757594 ACGGACACTACACACTTAAAACA 58.242 39.130 0.00 0.00 0.00 2.83
8 9 4.085415 CGACGGACACTACACACTTAAAAC 60.085 45.833 0.00 0.00 0.00 2.43
9 10 4.043750 CGACGGACACTACACACTTAAAA 58.956 43.478 0.00 0.00 0.00 1.52
10 11 3.314913 TCGACGGACACTACACACTTAAA 59.685 43.478 0.00 0.00 0.00 1.52
11 12 2.877786 TCGACGGACACTACACACTTAA 59.122 45.455 0.00 0.00 0.00 1.85
12 13 2.493035 TCGACGGACACTACACACTTA 58.507 47.619 0.00 0.00 0.00 2.24
13 14 1.311859 TCGACGGACACTACACACTT 58.688 50.000 0.00 0.00 0.00 3.16
14 15 1.531423 ATCGACGGACACTACACACT 58.469 50.000 0.00 0.00 0.00 3.55
15 16 2.342910 AATCGACGGACACTACACAC 57.657 50.000 0.00 0.00 0.00 3.82
16 17 3.503363 AGTTAATCGACGGACACTACACA 59.497 43.478 0.00 0.00 0.00 3.72
17 18 4.088823 AGTTAATCGACGGACACTACAC 57.911 45.455 0.00 0.00 0.00 2.90
18 19 5.220912 CCATAGTTAATCGACGGACACTACA 60.221 44.000 0.00 0.00 0.00 2.74
19 20 5.210715 CCATAGTTAATCGACGGACACTAC 58.789 45.833 0.00 0.00 0.00 2.73
20 21 4.883585 ACCATAGTTAATCGACGGACACTA 59.116 41.667 0.00 0.00 0.00 2.74
21 22 3.698040 ACCATAGTTAATCGACGGACACT 59.302 43.478 0.00 0.00 0.00 3.55
22 23 4.037858 ACCATAGTTAATCGACGGACAC 57.962 45.455 0.00 0.00 0.00 3.67
23 24 3.067180 GGACCATAGTTAATCGACGGACA 59.933 47.826 0.00 0.00 0.00 4.02
24 25 3.317430 AGGACCATAGTTAATCGACGGAC 59.683 47.826 0.00 0.00 0.00 4.79
25 26 3.559069 AGGACCATAGTTAATCGACGGA 58.441 45.455 0.00 0.00 0.00 4.69
26 27 4.317671 AAGGACCATAGTTAATCGACGG 57.682 45.455 0.00 0.00 0.00 4.79
27 28 5.579511 ACAAAAGGACCATAGTTAATCGACG 59.420 40.000 0.00 0.00 0.00 5.12
28 29 6.817140 AGACAAAAGGACCATAGTTAATCGAC 59.183 38.462 0.00 0.00 0.00 4.20
29 30 6.816640 CAGACAAAAGGACCATAGTTAATCGA 59.183 38.462 0.00 0.00 0.00 3.59
30 31 6.037172 CCAGACAAAAGGACCATAGTTAATCG 59.963 42.308 0.00 0.00 0.00 3.34
31 32 6.183360 GCCAGACAAAAGGACCATAGTTAATC 60.183 42.308 0.00 0.00 0.00 1.75
32 33 5.652452 GCCAGACAAAAGGACCATAGTTAAT 59.348 40.000 0.00 0.00 0.00 1.40
33 34 5.007682 GCCAGACAAAAGGACCATAGTTAA 58.992 41.667 0.00 0.00 0.00 2.01
34 35 4.585879 GCCAGACAAAAGGACCATAGTTA 58.414 43.478 0.00 0.00 0.00 2.24
35 36 3.421844 GCCAGACAAAAGGACCATAGTT 58.578 45.455 0.00 0.00 0.00 2.24
36 37 2.615493 CGCCAGACAAAAGGACCATAGT 60.615 50.000 0.00 0.00 0.00 2.12
37 38 2.009774 CGCCAGACAAAAGGACCATAG 58.990 52.381 0.00 0.00 0.00 2.23
38 39 1.626321 TCGCCAGACAAAAGGACCATA 59.374 47.619 0.00 0.00 0.00 2.74
39 40 0.400213 TCGCCAGACAAAAGGACCAT 59.600 50.000 0.00 0.00 0.00 3.55
40 41 0.400213 ATCGCCAGACAAAAGGACCA 59.600 50.000 0.00 0.00 0.00 4.02
41 42 0.804989 CATCGCCAGACAAAAGGACC 59.195 55.000 0.00 0.00 0.00 4.46
42 43 1.808411 TCATCGCCAGACAAAAGGAC 58.192 50.000 0.00 0.00 0.00 3.85
43 44 2.559698 TTCATCGCCAGACAAAAGGA 57.440 45.000 0.00 0.00 0.00 3.36
44 45 3.855689 ATTTCATCGCCAGACAAAAGG 57.144 42.857 0.00 0.00 0.00 3.11
45 46 5.122239 TCACTATTTCATCGCCAGACAAAAG 59.878 40.000 0.00 0.00 0.00 2.27
46 47 5.000591 TCACTATTTCATCGCCAGACAAAA 58.999 37.500 0.00 0.00 0.00 2.44
47 48 4.574892 TCACTATTTCATCGCCAGACAAA 58.425 39.130 0.00 0.00 0.00 2.83
48 49 4.200838 TCACTATTTCATCGCCAGACAA 57.799 40.909 0.00 0.00 0.00 3.18
49 50 3.885724 TCACTATTTCATCGCCAGACA 57.114 42.857 0.00 0.00 0.00 3.41
50 51 3.743396 GGATCACTATTTCATCGCCAGAC 59.257 47.826 0.00 0.00 0.00 3.51
51 52 3.244215 GGGATCACTATTTCATCGCCAGA 60.244 47.826 0.00 0.00 0.00 3.86
52 53 3.070018 GGGATCACTATTTCATCGCCAG 58.930 50.000 0.00 0.00 0.00 4.85
53 54 2.437651 TGGGATCACTATTTCATCGCCA 59.562 45.455 0.00 0.00 0.00 5.69
54 55 3.126001 TGGGATCACTATTTCATCGCC 57.874 47.619 0.00 0.00 0.00 5.54
55 56 4.318332 TCATGGGATCACTATTTCATCGC 58.682 43.478 0.00 0.00 0.00 4.58
56 57 5.994054 AGTTCATGGGATCACTATTTCATCG 59.006 40.000 0.00 0.00 0.00 3.84
57 58 6.293845 GCAGTTCATGGGATCACTATTTCATC 60.294 42.308 0.00 0.00 0.00 2.92
58 59 5.533903 GCAGTTCATGGGATCACTATTTCAT 59.466 40.000 0.00 0.00 0.00 2.57
59 60 4.883585 GCAGTTCATGGGATCACTATTTCA 59.116 41.667 0.00 0.00 0.00 2.69
60 61 4.024556 CGCAGTTCATGGGATCACTATTTC 60.025 45.833 0.00 0.00 44.43 2.17
61 62 3.879295 CGCAGTTCATGGGATCACTATTT 59.121 43.478 0.00 0.00 44.43 1.40
62 63 3.118261 ACGCAGTTCATGGGATCACTATT 60.118 43.478 0.00 0.00 37.78 1.73
63 64 2.435805 ACGCAGTTCATGGGATCACTAT 59.564 45.455 0.00 0.00 37.78 2.12
64 65 1.831106 ACGCAGTTCATGGGATCACTA 59.169 47.619 0.00 0.00 37.78 2.74
65 66 0.615331 ACGCAGTTCATGGGATCACT 59.385 50.000 0.00 0.00 37.78 3.41
66 67 2.309528 TACGCAGTTCATGGGATCAC 57.690 50.000 0.00 0.00 37.78 3.06
67 68 3.118445 TCAATACGCAGTTCATGGGATCA 60.118 43.478 0.00 0.00 37.78 2.92
68 69 3.466836 TCAATACGCAGTTCATGGGATC 58.533 45.455 0.00 0.00 37.78 3.36
69 70 3.558931 TCAATACGCAGTTCATGGGAT 57.441 42.857 0.00 0.00 37.78 3.85
70 71 3.558931 ATCAATACGCAGTTCATGGGA 57.441 42.857 0.00 0.00 37.78 4.37
71 72 3.378112 ACAATCAATACGCAGTTCATGGG 59.622 43.478 0.00 0.00 37.78 4.00
72 73 4.142622 ACACAATCAATACGCAGTTCATGG 60.143 41.667 0.00 0.00 37.78 3.66
73 74 4.973396 ACACAATCAATACGCAGTTCATG 58.027 39.130 0.00 0.00 37.78 3.07
74 75 5.627499 AACACAATCAATACGCAGTTCAT 57.373 34.783 0.00 0.00 37.78 2.57
75 76 5.431420 AAACACAATCAATACGCAGTTCA 57.569 34.783 0.00 0.00 37.78 3.18
76 77 7.369800 CGTATAAACACAATCAATACGCAGTTC 59.630 37.037 0.00 0.00 37.78 3.01
77 78 7.148540 ACGTATAAACACAATCAATACGCAGTT 60.149 33.333 11.76 0.00 45.64 3.16
78 79 6.311935 ACGTATAAACACAATCAATACGCAGT 59.688 34.615 11.76 0.00 45.64 4.40
79 80 6.701937 ACGTATAAACACAATCAATACGCAG 58.298 36.000 11.76 0.00 45.64 5.18
80 81 6.650239 ACGTATAAACACAATCAATACGCA 57.350 33.333 11.76 0.00 45.64 5.24
81 82 6.784227 GCTACGTATAAACACAATCAATACGC 59.216 38.462 11.76 0.00 45.64 4.42
82 83 6.993930 CGCTACGTATAAACACAATCAATACG 59.006 38.462 10.61 10.61 46.58 3.06
83 84 7.834529 ACGCTACGTATAAACACAATCAATAC 58.165 34.615 0.00 0.00 38.73 1.89
84 85 7.990541 ACGCTACGTATAAACACAATCAATA 57.009 32.000 0.00 0.00 38.73 1.90
85 86 6.897259 ACGCTACGTATAAACACAATCAAT 57.103 33.333 0.00 0.00 38.73 2.57
86 87 6.527089 CAACGCTACGTATAAACACAATCAA 58.473 36.000 0.00 0.00 39.99 2.57
87 88 5.444877 GCAACGCTACGTATAAACACAATCA 60.445 40.000 0.00 0.00 39.99 2.57
88 89 4.953814 GCAACGCTACGTATAAACACAATC 59.046 41.667 0.00 0.00 39.99 2.67
89 90 4.389382 TGCAACGCTACGTATAAACACAAT 59.611 37.500 0.00 0.00 39.99 2.71
90 91 3.739810 TGCAACGCTACGTATAAACACAA 59.260 39.130 0.00 0.00 39.99 3.33
91 92 3.315418 TGCAACGCTACGTATAAACACA 58.685 40.909 0.00 0.00 39.99 3.72
92 93 3.976468 TGCAACGCTACGTATAAACAC 57.024 42.857 0.00 0.00 39.99 3.32
93 94 3.927758 ACATGCAACGCTACGTATAAACA 59.072 39.130 0.00 0.00 39.99 2.83
94 95 4.201647 ACACATGCAACGCTACGTATAAAC 60.202 41.667 0.00 0.00 39.99 2.01
95 96 3.927758 ACACATGCAACGCTACGTATAAA 59.072 39.130 0.00 0.00 39.99 1.40
96 97 3.513662 ACACATGCAACGCTACGTATAA 58.486 40.909 0.00 0.00 39.99 0.98
97 98 3.153676 ACACATGCAACGCTACGTATA 57.846 42.857 0.00 0.00 39.99 1.47
98 99 2.004583 ACACATGCAACGCTACGTAT 57.995 45.000 0.00 0.00 39.99 3.06
99 100 1.457683 CAACACATGCAACGCTACGTA 59.542 47.619 0.00 0.00 39.99 3.57
100 101 0.234625 CAACACATGCAACGCTACGT 59.765 50.000 0.00 0.00 43.97 3.57
101 102 2.986141 CAACACATGCAACGCTACG 58.014 52.632 0.00 0.00 0.00 3.51
112 113 0.686224 CCCAAACCCATGCAACACAT 59.314 50.000 0.00 0.00 40.66 3.21
113 114 0.689080 ACCCAAACCCATGCAACACA 60.689 50.000 0.00 0.00 0.00 3.72
114 115 0.467804 AACCCAAACCCATGCAACAC 59.532 50.000 0.00 0.00 0.00 3.32
115 116 1.207791 AAACCCAAACCCATGCAACA 58.792 45.000 0.00 0.00 0.00 3.33
116 117 2.340210 AAAACCCAAACCCATGCAAC 57.660 45.000 0.00 0.00 0.00 4.17
117 118 4.503714 TTTAAAACCCAAACCCATGCAA 57.496 36.364 0.00 0.00 0.00 4.08
118 119 4.713792 ATTTAAAACCCAAACCCATGCA 57.286 36.364 0.00 0.00 0.00 3.96
119 120 6.410540 TCATATTTAAAACCCAAACCCATGC 58.589 36.000 0.00 0.00 0.00 4.06
120 121 7.846066 TCTCATATTTAAAACCCAAACCCATG 58.154 34.615 0.00 0.00 0.00 3.66
121 122 7.898636 TCTCTCATATTTAAAACCCAAACCCAT 59.101 33.333 0.00 0.00 0.00 4.00
122 123 7.177744 GTCTCTCATATTTAAAACCCAAACCCA 59.822 37.037 0.00 0.00 0.00 4.51
123 124 7.544622 GTCTCTCATATTTAAAACCCAAACCC 58.455 38.462 0.00 0.00 0.00 4.11
124 125 7.248437 CGTCTCTCATATTTAAAACCCAAACC 58.752 38.462 0.00 0.00 0.00 3.27
125 126 6.745907 GCGTCTCTCATATTTAAAACCCAAAC 59.254 38.462 0.00 0.00 0.00 2.93
126 127 6.402766 CGCGTCTCTCATATTTAAAACCCAAA 60.403 38.462 0.00 0.00 0.00 3.28
127 128 5.064198 CGCGTCTCTCATATTTAAAACCCAA 59.936 40.000 0.00 0.00 0.00 4.12
128 129 4.569162 CGCGTCTCTCATATTTAAAACCCA 59.431 41.667 0.00 0.00 0.00 4.51
129 130 4.025145 CCGCGTCTCTCATATTTAAAACCC 60.025 45.833 4.92 0.00 0.00 4.11
130 131 4.807304 TCCGCGTCTCTCATATTTAAAACC 59.193 41.667 4.92 0.00 0.00 3.27
131 132 5.961395 TCCGCGTCTCTCATATTTAAAAC 57.039 39.130 4.92 0.00 0.00 2.43
132 133 6.019075 CACATCCGCGTCTCTCATATTTAAAA 60.019 38.462 4.92 0.00 0.00 1.52
133 134 5.462068 CACATCCGCGTCTCTCATATTTAAA 59.538 40.000 4.92 0.00 0.00 1.52
134 135 4.982295 CACATCCGCGTCTCTCATATTTAA 59.018 41.667 4.92 0.00 0.00 1.52
135 136 4.277423 TCACATCCGCGTCTCTCATATTTA 59.723 41.667 4.92 0.00 0.00 1.40
136 137 3.068165 TCACATCCGCGTCTCTCATATTT 59.932 43.478 4.92 0.00 0.00 1.40
137 138 2.623416 TCACATCCGCGTCTCTCATATT 59.377 45.455 4.92 0.00 0.00 1.28
138 139 2.227626 CTCACATCCGCGTCTCTCATAT 59.772 50.000 4.92 0.00 0.00 1.78
139 140 1.604278 CTCACATCCGCGTCTCTCATA 59.396 52.381 4.92 0.00 0.00 2.15
140 141 0.383590 CTCACATCCGCGTCTCTCAT 59.616 55.000 4.92 0.00 0.00 2.90
141 142 0.676782 TCTCACATCCGCGTCTCTCA 60.677 55.000 4.92 0.00 0.00 3.27
142 143 0.452184 TTCTCACATCCGCGTCTCTC 59.548 55.000 4.92 0.00 0.00 3.20
143 144 0.171455 GTTCTCACATCCGCGTCTCT 59.829 55.000 4.92 0.00 0.00 3.10
144 145 0.171455 AGTTCTCACATCCGCGTCTC 59.829 55.000 4.92 0.00 0.00 3.36
145 146 1.402259 CTAGTTCTCACATCCGCGTCT 59.598 52.381 4.92 0.00 0.00 4.18
146 147 1.828832 CTAGTTCTCACATCCGCGTC 58.171 55.000 4.92 0.00 0.00 5.19
147 148 0.179134 GCTAGTTCTCACATCCGCGT 60.179 55.000 4.92 0.00 0.00 6.01
148 149 0.179137 TGCTAGTTCTCACATCCGCG 60.179 55.000 0.00 0.00 0.00 6.46
149 150 1.863454 CATGCTAGTTCTCACATCCGC 59.137 52.381 0.00 0.00 0.00 5.54
150 151 2.862536 CACATGCTAGTTCTCACATCCG 59.137 50.000 0.00 0.00 0.00 4.18
151 152 3.866651 ACACATGCTAGTTCTCACATCC 58.133 45.455 0.00 0.00 0.00 3.51
152 153 3.549471 CGACACATGCTAGTTCTCACATC 59.451 47.826 0.00 0.00 0.00 3.06
153 154 3.515630 CGACACATGCTAGTTCTCACAT 58.484 45.455 0.00 0.00 0.00 3.21
154 155 2.352715 CCGACACATGCTAGTTCTCACA 60.353 50.000 0.00 0.00 0.00 3.58
155 156 2.094700 TCCGACACATGCTAGTTCTCAC 60.095 50.000 0.00 0.00 0.00 3.51
156 157 2.094700 GTCCGACACATGCTAGTTCTCA 60.095 50.000 0.00 0.00 0.00 3.27
157 158 2.531206 GTCCGACACATGCTAGTTCTC 58.469 52.381 0.00 0.00 0.00 2.87
158 159 1.135373 CGTCCGACACATGCTAGTTCT 60.135 52.381 0.00 0.00 0.00 3.01
159 160 1.269166 CGTCCGACACATGCTAGTTC 58.731 55.000 0.00 0.00 0.00 3.01
160 161 0.601558 ACGTCCGACACATGCTAGTT 59.398 50.000 0.00 0.00 0.00 2.24
161 162 0.601558 AACGTCCGACACATGCTAGT 59.398 50.000 0.00 0.00 0.00 2.57
162 163 1.390123 CAAACGTCCGACACATGCTAG 59.610 52.381 0.00 0.00 0.00 3.42
163 164 1.000052 TCAAACGTCCGACACATGCTA 60.000 47.619 0.00 0.00 0.00 3.49
164 165 0.249699 TCAAACGTCCGACACATGCT 60.250 50.000 0.00 0.00 0.00 3.79
165 166 0.163788 CTCAAACGTCCGACACATGC 59.836 55.000 0.00 0.00 0.00 4.06
166 167 0.790207 CCTCAAACGTCCGACACATG 59.210 55.000 0.00 0.00 0.00 3.21
167 168 0.677288 TCCTCAAACGTCCGACACAT 59.323 50.000 0.00 0.00 0.00 3.21
168 169 0.677288 ATCCTCAAACGTCCGACACA 59.323 50.000 0.00 0.00 0.00 3.72
169 170 1.347320 GATCCTCAAACGTCCGACAC 58.653 55.000 0.00 0.00 0.00 3.67
170 171 0.109458 CGATCCTCAAACGTCCGACA 60.109 55.000 0.00 0.00 0.00 4.35
171 172 0.801067 CCGATCCTCAAACGTCCGAC 60.801 60.000 0.00 0.00 0.00 4.79
172 173 0.961857 TCCGATCCTCAAACGTCCGA 60.962 55.000 0.00 0.00 0.00 4.55
173 174 0.102481 ATCCGATCCTCAAACGTCCG 59.898 55.000 0.00 0.00 0.00 4.79
174 175 2.311124 AATCCGATCCTCAAACGTCC 57.689 50.000 0.00 0.00 0.00 4.79
175 176 2.223044 GCAAATCCGATCCTCAAACGTC 60.223 50.000 0.00 0.00 0.00 4.34
176 177 1.737793 GCAAATCCGATCCTCAAACGT 59.262 47.619 0.00 0.00 0.00 3.99
177 178 1.064060 GGCAAATCCGATCCTCAAACG 59.936 52.381 0.00 0.00 0.00 3.60
178 179 2.091541 TGGCAAATCCGATCCTCAAAC 58.908 47.619 0.00 0.00 37.80 2.93
179 180 2.505650 TGGCAAATCCGATCCTCAAA 57.494 45.000 0.00 0.00 37.80 2.69
180 181 2.505650 TTGGCAAATCCGATCCTCAA 57.494 45.000 0.00 0.00 37.80 3.02
181 182 2.734755 ATTGGCAAATCCGATCCTCA 57.265 45.000 3.01 0.00 33.48 3.86
182 183 2.294512 GGAATTGGCAAATCCGATCCTC 59.705 50.000 18.00 0.00 38.02 3.71
183 184 2.310538 GGAATTGGCAAATCCGATCCT 58.689 47.619 18.00 0.00 38.02 3.24
184 185 2.031120 TGGAATTGGCAAATCCGATCC 58.969 47.619 25.11 15.78 38.02 3.36
185 186 3.799281 TTGGAATTGGCAAATCCGATC 57.201 42.857 25.11 6.16 38.02 3.69
186 187 4.758773 AATTGGAATTGGCAAATCCGAT 57.241 36.364 25.26 25.26 40.83 4.18
187 188 5.453057 CCATAATTGGAATTGGCAAATCCGA 60.453 40.000 23.29 23.29 46.92 4.55
188 189 4.751098 CCATAATTGGAATTGGCAAATCCG 59.249 41.667 25.11 12.29 46.92 4.18
202 203 2.670229 GCATCAGCGCATCCATAATTGG 60.670 50.000 11.47 0.00 45.15 3.16
203 204 2.592194 GCATCAGCGCATCCATAATTG 58.408 47.619 11.47 0.00 0.00 2.32
216 217 3.310774 ACTGATTACAATCACGCATCAGC 59.689 43.478 7.26 0.00 43.15 4.26
229 230 4.443621 TCAACGTCAACCAACTGATTACA 58.556 39.130 0.00 0.00 0.00 2.41
239 240 2.354510 CTCTTTTGCTCAACGTCAACCA 59.645 45.455 0.00 0.00 0.00 3.67
246 247 8.443160 TCTTCATATAAACTCTTTTGCTCAACG 58.557 33.333 0.00 0.00 0.00 4.10
392 394 1.651987 GTCCGTGTATGTGACCATGG 58.348 55.000 11.19 11.19 38.80 3.66
408 410 1.219393 CTTCTCCTTGGCCTCGTCC 59.781 63.158 3.32 0.00 0.00 4.79
409 411 0.108567 GTCTTCTCCTTGGCCTCGTC 60.109 60.000 3.32 0.00 0.00 4.20
411 413 1.153745 CGTCTTCTCCTTGGCCTCG 60.154 63.158 3.32 0.00 0.00 4.63
415 421 0.790814 CGTTTCGTCTTCTCCTTGGC 59.209 55.000 0.00 0.00 0.00 4.52
548 554 3.019564 CAGATCAGATTTGGGTGGGTTC 58.980 50.000 0.00 0.00 0.00 3.62
585 592 2.394563 GCTTCACAAGGAGGCGAGC 61.395 63.158 0.00 0.00 38.95 5.03
597 604 2.690778 GGTGGGTGCATCGCTTCAC 61.691 63.158 0.00 0.00 0.00 3.18
598 605 2.359850 GGTGGGTGCATCGCTTCA 60.360 61.111 0.00 0.00 0.00 3.02
599 606 1.523154 TTTGGTGGGTGCATCGCTTC 61.523 55.000 0.00 0.00 0.00 3.86
600 607 1.112315 TTTTGGTGGGTGCATCGCTT 61.112 50.000 0.00 0.00 0.00 4.68
601 608 0.899717 ATTTTGGTGGGTGCATCGCT 60.900 50.000 0.00 0.00 0.00 4.93
602 609 0.814457 TATTTTGGTGGGTGCATCGC 59.186 50.000 0.00 0.00 0.00 4.58
604 611 2.099756 GCTCTATTTTGGTGGGTGCATC 59.900 50.000 0.00 0.00 0.00 3.91
606 613 1.075374 AGCTCTATTTTGGTGGGTGCA 59.925 47.619 0.00 0.00 0.00 4.57
630 638 1.228245 AGTGGTGTGGTGGTGCATC 60.228 57.895 0.00 0.00 0.00 3.91
644 652 3.980646 TTGTTCGAACCAAATCAGTGG 57.019 42.857 24.78 0.00 44.92 4.00
645 653 6.915300 TGTAAATTGTTCGAACCAAATCAGTG 59.085 34.615 24.78 0.00 0.00 3.66
646 654 6.915843 GTGTAAATTGTTCGAACCAAATCAGT 59.084 34.615 24.78 10.37 0.00 3.41
647 655 6.362283 GGTGTAAATTGTTCGAACCAAATCAG 59.638 38.462 24.78 0.00 0.00 2.90
681 690 0.456221 GGCTCTACTCTAGCGTTGCA 59.544 55.000 0.00 0.00 41.03 4.08
688 697 5.507650 GGGTAAACGATTGGCTCTACTCTAG 60.508 48.000 0.00 0.00 0.00 2.43
695 704 3.371965 TCTAGGGTAAACGATTGGCTCT 58.628 45.455 0.00 0.00 0.00 4.09
696 705 3.814005 TCTAGGGTAAACGATTGGCTC 57.186 47.619 0.00 0.00 0.00 4.70
697 706 4.704965 GATTCTAGGGTAAACGATTGGCT 58.295 43.478 0.00 0.00 0.00 4.75
698 707 3.493503 CGATTCTAGGGTAAACGATTGGC 59.506 47.826 0.00 0.00 0.00 4.52
699 708 4.940463 TCGATTCTAGGGTAAACGATTGG 58.060 43.478 0.00 0.00 0.00 3.16
700 709 4.444720 GCTCGATTCTAGGGTAAACGATTG 59.555 45.833 0.00 0.00 0.00 2.67
806 815 8.016229 CGCTCACGTGATTAGTAGTAGATTATT 58.984 37.037 20.40 0.00 33.53 1.40
808 817 6.565435 GCGCTCACGTGATTAGTAGTAGATTA 60.565 42.308 20.40 0.00 42.83 1.75
809 818 5.749620 CGCTCACGTGATTAGTAGTAGATT 58.250 41.667 20.40 0.00 33.53 2.40
810 819 4.319622 GCGCTCACGTGATTAGTAGTAGAT 60.320 45.833 20.40 0.00 42.83 1.98
812 821 3.289911 GCGCTCACGTGATTAGTAGTAG 58.710 50.000 20.40 4.95 42.83 2.57
813 822 3.329743 GCGCTCACGTGATTAGTAGTA 57.670 47.619 20.40 0.00 42.83 1.82
814 823 2.190325 GCGCTCACGTGATTAGTAGT 57.810 50.000 20.40 0.00 42.83 2.73
862 871 2.108362 CGGGTTAGCTTAGGCCGG 59.892 66.667 0.00 0.00 39.73 6.13
863 872 2.108362 CCGGGTTAGCTTAGGCCG 59.892 66.667 0.00 0.00 39.73 6.13
864 873 2.203167 GCCGGGTTAGCTTAGGCC 60.203 66.667 2.18 0.00 41.81 5.19
865 874 2.203167 GGCCGGGTTAGCTTAGGC 60.203 66.667 2.18 0.00 46.51 3.93
866 875 0.463833 CAAGGCCGGGTTAGCTTAGG 60.464 60.000 2.18 0.00 0.00 2.69
867 876 0.252197 ACAAGGCCGGGTTAGCTTAG 59.748 55.000 2.18 0.00 0.00 2.18
868 877 0.035820 CACAAGGCCGGGTTAGCTTA 60.036 55.000 2.18 0.00 0.00 3.09
869 878 1.303317 CACAAGGCCGGGTTAGCTT 60.303 57.895 2.18 0.00 0.00 3.74
870 879 2.064242 AACACAAGGCCGGGTTAGCT 62.064 55.000 2.18 0.00 0.00 3.32
871 880 1.583495 GAACACAAGGCCGGGTTAGC 61.583 60.000 2.18 0.00 0.00 3.09
872 881 0.958876 GGAACACAAGGCCGGGTTAG 60.959 60.000 2.18 0.00 0.00 2.34
908 917 2.420642 GAACGTTTCCTTACCTGGGAC 58.579 52.381 0.46 0.00 31.94 4.46
985 994 7.009631 CCACAGAGTCATCTATTAACGACTTTG 59.990 40.741 0.00 0.00 42.93 2.77
986 995 7.036220 CCACAGAGTCATCTATTAACGACTTT 58.964 38.462 0.00 0.00 38.80 2.66
987 996 6.153000 ACCACAGAGTCATCTATTAACGACTT 59.847 38.462 0.00 0.00 38.80 3.01
988 997 5.652891 ACCACAGAGTCATCTATTAACGACT 59.347 40.000 0.00 0.00 41.32 4.18
1008 1017 1.602377 GTTGCTCCTGTGTGTAACCAC 59.398 52.381 0.00 0.00 42.19 4.16
1011 1020 1.264288 GCTGTTGCTCCTGTGTGTAAC 59.736 52.381 0.00 0.00 36.03 2.50
1039 1048 4.748600 GTCCCTATCCGTTTTAAATCGAGG 59.251 45.833 17.95 15.64 0.00 4.63
1040 1049 5.353938 TGTCCCTATCCGTTTTAAATCGAG 58.646 41.667 17.95 8.89 0.00 4.04
1041 1050 5.127519 TCTGTCCCTATCCGTTTTAAATCGA 59.872 40.000 17.95 6.72 0.00 3.59
1042 1051 5.233689 GTCTGTCCCTATCCGTTTTAAATCG 59.766 44.000 10.96 10.96 0.00 3.34
1043 1052 5.233689 CGTCTGTCCCTATCCGTTTTAAATC 59.766 44.000 0.00 0.00 0.00 2.17
1044 1053 5.105228 TCGTCTGTCCCTATCCGTTTTAAAT 60.105 40.000 0.00 0.00 0.00 1.40
1045 1054 4.220382 TCGTCTGTCCCTATCCGTTTTAAA 59.780 41.667 0.00 0.00 0.00 1.52
1047 1056 3.355378 TCGTCTGTCCCTATCCGTTTTA 58.645 45.455 0.00 0.00 0.00 1.52
1130 1147 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1131 1148 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1132 1149 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1133 1150 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1134 1151 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
1135 1152 5.598005 AGAAGAGAGAGAGAGAGAGAGAGAG 59.402 48.000 0.00 0.00 0.00 3.20
1136 1153 5.523588 AGAAGAGAGAGAGAGAGAGAGAGA 58.476 45.833 0.00 0.00 0.00 3.10
1137 1154 5.867903 AGAAGAGAGAGAGAGAGAGAGAG 57.132 47.826 0.00 0.00 0.00 3.20
1166 1183 3.431486 CGGGGATCTGAAGAGAAAGAAGG 60.431 52.174 0.00 0.00 0.00 3.46
1203 1223 0.839946 ACTTGGTGGTCAGTTGCTCT 59.160 50.000 0.00 0.00 0.00 4.09
1217 1237 1.026718 GTCCATGCCCGAGAACTTGG 61.027 60.000 1.30 1.30 33.52 3.61
1237 1257 2.181021 GATCCAGTCGCCGTCGTT 59.819 61.111 0.00 0.00 36.96 3.85
1668 1688 1.348250 GTATCCGTACGACGCGTCA 59.652 57.895 35.71 17.48 40.91 4.35
1779 2180 3.068691 CACTCCTCCGGCGAAGGA 61.069 66.667 15.93 15.93 40.67 3.36
1780 2181 4.148825 CCACTCCTCCGGCGAAGG 62.149 72.222 5.53 5.53 35.05 3.46
1902 2306 6.426633 TCTTTACAATCATCGAGTGCTTTTGA 59.573 34.615 0.00 0.00 30.24 2.69
1903 2307 6.602179 TCTTTACAATCATCGAGTGCTTTTG 58.398 36.000 0.00 0.00 30.24 2.44
1978 2382 4.646492 GCATTGTATTCCTTCATCACCCTT 59.354 41.667 0.00 0.00 0.00 3.95
2048 2452 6.926826 TGACTTCTTTCACACTAAAATAGCGA 59.073 34.615 0.00 0.00 0.00 4.93
2050 2454 8.940952 AGATGACTTCTTTCACACTAAAATAGC 58.059 33.333 0.00 0.00 0.00 2.97
2089 2893 6.824196 AGACGTGATCTTGTACTCTCTTGATA 59.176 38.462 0.00 0.00 31.62 2.15
2091 2895 5.004448 AGACGTGATCTTGTACTCTCTTGA 58.996 41.667 0.00 0.00 31.62 3.02
2113 2917 7.097289 CGCGTCATTTATTGAAAATGCTCTAAG 60.097 37.037 0.00 0.00 37.50 2.18
2114 2918 6.686679 CGCGTCATTTATTGAAAATGCTCTAA 59.313 34.615 0.00 0.00 37.50 2.10
2123 2928 5.352846 TCCAGATTCGCGTCATTTATTGAAA 59.647 36.000 5.77 0.00 35.70 2.69
2136 2941 5.409643 AATTTTACATCTCCAGATTCGCG 57.590 39.130 0.00 0.00 31.21 5.87
2235 3042 8.621532 TTTGCATCATCTATATTGGAGTTACC 57.378 34.615 0.00 0.00 39.54 2.85
2247 3054 8.969260 TTACATCTTCACTTTGCATCATCTAT 57.031 30.769 0.00 0.00 0.00 1.98
2248 3055 8.791327 TTTACATCTTCACTTTGCATCATCTA 57.209 30.769 0.00 0.00 0.00 1.98
2293 3100 1.163420 TTTGTGCGGCTGTACACAGG 61.163 55.000 16.66 0.00 46.65 4.00
2297 3104 0.601576 ACGATTTGTGCGGCTGTACA 60.602 50.000 12.89 12.89 39.05 2.90
2300 3107 1.448985 ATTACGATTTGTGCGGCTGT 58.551 45.000 0.00 0.00 0.00 4.40
2308 3115 5.421277 TCGGGATGTTGTATTACGATTTGT 58.579 37.500 0.00 0.00 0.00 2.83
2310 3117 6.988622 TTTCGGGATGTTGTATTACGATTT 57.011 33.333 0.00 0.00 0.00 2.17
2311 3118 6.372103 TGTTTTCGGGATGTTGTATTACGATT 59.628 34.615 0.00 0.00 0.00 3.34
2316 3123 7.228906 TGAAGTTGTTTTCGGGATGTTGTATTA 59.771 33.333 0.00 0.00 0.00 0.98
2321 3128 4.300189 TGAAGTTGTTTTCGGGATGTTG 57.700 40.909 0.00 0.00 0.00 3.33
2325 3132 7.550906 TGAAAATTTTGAAGTTGTTTTCGGGAT 59.449 29.630 8.47 0.00 40.07 3.85
2341 3148 8.433893 TGATATTGCGAACATGTGAAAATTTTG 58.566 29.630 8.47 0.00 0.00 2.44
2406 3213 9.592720 GCAATAATTTTGTTGTATTTGTGTTCC 57.407 29.630 2.44 0.00 32.65 3.62
2465 3272 9.153721 GTATTGAAAATGGCATGATGAAAGAAA 57.846 29.630 0.00 0.00 0.00 2.52
2466 3273 8.533657 AGTATTGAAAATGGCATGATGAAAGAA 58.466 29.630 0.00 0.00 0.00 2.52
2473 3280 6.551975 TGATGGAGTATTGAAAATGGCATGAT 59.448 34.615 0.00 0.00 0.00 2.45
2506 3313 3.137533 TGACATGCACGATCAACTTCAA 58.862 40.909 0.00 0.00 0.00 2.69
2523 3330 9.554395 TGTACAATGAAATTAAAGACTCTGACA 57.446 29.630 0.00 0.00 32.46 3.58
2524 3331 9.813080 GTGTACAATGAAATTAAAGACTCTGAC 57.187 33.333 0.00 0.00 32.46 3.51
2527 3334 9.574516 AAGGTGTACAATGAAATTAAAGACTCT 57.425 29.630 0.00 0.00 32.46 3.24
2534 3341 9.513906 TCTCATGAAGGTGTACAATGAAATTAA 57.486 29.630 0.00 0.00 32.46 1.40
2559 3366 3.357166 AATAGGAGCGAATCAGACGTC 57.643 47.619 7.70 7.70 0.00 4.34
2624 3431 6.662414 TGAGCGTAGACAGGATTTAAATTG 57.338 37.500 1.43 0.26 0.00 2.32
2635 3442 4.990543 TGTTGAAAATGAGCGTAGACAG 57.009 40.909 0.00 0.00 0.00 3.51
2640 3447 9.288124 CAAATATGATTGTTGAAAATGAGCGTA 57.712 29.630 0.00 0.00 0.00 4.42
2655 3462 4.320714 CCCATCAGTCGCCAAATATGATTG 60.321 45.833 0.00 0.00 0.00 2.67
2656 3463 3.822735 CCCATCAGTCGCCAAATATGATT 59.177 43.478 0.00 0.00 0.00 2.57
2662 3469 2.114670 CGCCCATCAGTCGCCAAAT 61.115 57.895 0.00 0.00 0.00 2.32
2663 3470 2.745884 CGCCCATCAGTCGCCAAA 60.746 61.111 0.00 0.00 0.00 3.28
2684 3491 3.150647 AAACTTTGGGCCAGCGCAC 62.151 57.895 11.47 0.00 38.61 5.34
2685 3492 2.837291 AAACTTTGGGCCAGCGCA 60.837 55.556 11.47 5.15 36.38 6.09
2686 3493 2.049156 GAAACTTTGGGCCAGCGC 60.049 61.111 6.23 0.00 0.00 5.92
2687 3494 2.255252 CGAAACTTTGGGCCAGCG 59.745 61.111 6.23 4.27 0.00 5.18
2688 3495 2.142357 GACCGAAACTTTGGGCCAGC 62.142 60.000 6.23 0.00 33.19 4.85
2689 3496 1.852067 CGACCGAAACTTTGGGCCAG 61.852 60.000 6.23 0.00 36.27 4.85
2690 3497 1.894756 CGACCGAAACTTTGGGCCA 60.895 57.895 0.00 0.00 36.27 5.36
2691 3498 2.622962 CCGACCGAAACTTTGGGCC 61.623 63.158 0.00 0.00 36.27 5.80
2692 3499 1.848932 GACCGACCGAAACTTTGGGC 61.849 60.000 2.59 0.00 36.29 5.36
2693 3500 1.562575 CGACCGACCGAAACTTTGGG 61.563 60.000 1.17 1.17 35.94 4.12
2694 3501 0.877213 ACGACCGACCGAAACTTTGG 60.877 55.000 3.56 0.00 37.75 3.28
2695 3502 0.231279 CACGACCGACCGAAACTTTG 59.769 55.000 3.56 0.00 0.00 2.77
2696 3503 0.179103 ACACGACCGACCGAAACTTT 60.179 50.000 3.56 0.00 0.00 2.66
2697 3504 0.595825 GACACGACCGACCGAAACTT 60.596 55.000 3.56 0.00 0.00 2.66
2698 3505 1.008079 GACACGACCGACCGAAACT 60.008 57.895 3.56 0.00 0.00 2.66
2699 3506 3.530666 GACACGACCGACCGAAAC 58.469 61.111 3.56 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.