>input_sequence_70832
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------------------------------------------------ATGACTCTGTGGTTACACACAGGAGCAACAGC
TTTCTTCCCTCGATTT--------AAAACGGATAGGGACAGACGAGTCTCTCCTCATGGTCGTAGCAGGCCATGCCTATT
TAATCGCACCCGTCCGCTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTCTCTTCTTCTTCTCCTTCTT---TCTCTTCA
GATCCCCGGAAGCCCCAGACCCAGAGCAACTGACCACCAAGTTCTCGGGCATGGACAACGACGGCGACTGGATCACGGCG
AGGTACCTCCTCTCCTCCATCCTCGGCCGGAACCCCCTCGTCGTCGACCACGTCGACGAGGAGTCCTTCCCGGTCGACCA
CGCCCCCGCCGCCGCCGCCCGCGGCGGGCCGGCGGAGGCGCCGGCGTGGCAGCCGCCGCCGGCCGTGTTCGCGGCGCCGA
GCGTGGCCGGCACGGTGTGCGCGGTGTGCACGGAGGAGATCGCGGTGGCGGACCCCGTGGTGCGGCTGCCGTGCGCGCAC
TGGTACCACGCCGGCTGCATCGCGCCCTGGCTCGGGATCCGGAGCACCTGCCCCATGTGCCGCGCCGAGCTGCCGGCCAG
GGAGGAGGCCGGCGAGGCCGGCGCCGGCGTCGGCCGCGAGAAGCCCCCGCGCGCCGAGGCCGGGACCAGCGCCGCCGGCG
TGCGGCGTGACGCGTCGTAC------GGATACGTGGCCGCTGGGGGCGTCCTGTCCGGCTGA------------------
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>chr5B_1_TraesCS5B01G164100
AGGAGTATGTTTTAAGTGTGTAGTGTCCGTCGATTAACTATGGTCCTTTTGTCTGGCGATGAAATAGTGATCCCATGAAC
TGCGTATTGATTGTGTTTATACGTAGCGTTGCATGTGTTGCATGGGTTTGGGTTTTAAATATGAGAGACGCGGATGTGAG
AACTAGCATGTGTCGGACGTTTGAGGATCGGATTTGCCAATTCCAATTATGGATGCGCTGATGCGTGATTGTAATCAGTT
GGTTGACGTTGAGCAAAAGAGTTTATATGAAGAAAAAAAAGACACGCGGCCTGCCCTCCACGCCCATAGATTGGGTGTGG
ACTCTCCGTGGGCGCAACCCTCCACGCCCATAGAACCGA-GCCGGTGCGGCGGATAACCCTGCCACGCCATCGCCATGGT
CACATACACGGAC----GAGGCCAAGGAGAAGACGAAACGGCACGCTTCCCGTTCCATCATCAAACGTTCTGCCGCAACG
CTGTCTTATCTGGTCCGACTATTCTGCGCCCACACCTTATCTCCCTTGACGTCCTAGTCACCGCGCCGTCGACGAACCCA
CCCAAA-TCTGATCTGCGCATCTCCACTTTCGCTCGCCTCCTTGTGAAGCGAT-GCACCCACCAAAATAGAGCTCGTGAT
GCACCACCACACCACTGATTTGGTTCGAACAATTT-ACACCTGCAAGGCTGCAACGCTAGAGTAGAGCCAATCGTTTACC
CTAGAATCGAGCACGTAGAGTGCGAAAACCTGGAGCTAGAGTAGATTAGAGAATCTGATCGCGTCAGCAGTGAGTGTGTG
TTATCCATTCTACTAATAATCTACTACTAATCACGTGAGCGCGGCTAACACCGTCGTCGCACCGTACGTCCCGGCCTAAG
CTAACCCGGCCTTGTGTTCCTGGTGGACTCTGTCCAGTCCCAGGTAAGGAAACGTTCCAGGTTACTGCTAAATTATTAGG
ATAAGATAAGATAAACGCGTGCGCCTAAACAAACAAAGTCGTTAATAGATGACTCTGTGGTTACACACAGGAGCAACAGC
TTTCTTCCCTCGATTT--------AAAACGGATAGGGACAGACGAGTCTCTCCTCATGGTCGTAGCAGGCCATGCCTATT
TAATCGCACCCGTCCGCTCTCCCCCATCTCTCTCTCTCTCTCTCTCTCTCTCTTCTTCTTCTCCTTCTT---TCTCTTCA
GATCCCCGGAAGCCCCAGACCCAGAGCAACTGACCACCAAGTTCTCGGGCATGGACAACGACGGCGACTGGATCACGGCG
AGGTACCTCCTCTCCTCCATCCTCGGCCGGAACCCCCTCGTCGTCGACCACGTCGACGAGGAGTCCTTCCCGGTCGACCA
CGCCCCCGCCGCCGCCGCCCGCGGCGGGCCGGCGGAGGCGCCGGCGTGGCAGCCGCCGCCGGCCGTGTTCGCGGCGCCGA
GCGTGGCCGGCACGGTGTGCGCGGTGTGCACGGAGGAGATCGCGGTGGCGGACCCCGTGGTGCGGCTGCCGTGCGCGCAC
TGGTACCACGCCGGCTGCATCGCGCCCTGGCTCGGGATCCGGAGCACCTGCCCCATGTGCCGCGCCGAGCTGCCGGCCAG
GGAGGAGGCCGGCGAGGCCGGCGCCGGCGTCGGCCGCGAGAAGCCCCCGCGCGCCGAGGCCGGGACCAGCGCCGCCGGCG
TGCGGCGTGACGCGTCGTAC------GGATACGTGGCCGCTGGGGGCGTCCTGTCCGGCTGATGGGCGGGCGAGCGGGGC
CGT------CGCGT-CGTCGTGCGCGCGCCATGGCTTTTGTCTT------------------------------------
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------------TTTTTTTTCCTTCGCCGGAGGAGTGGTGCTCGATACCTGTTGTACAAATG---AAATGGTTAATTATT
AACATGATGTTGATTCTTGAGTGCTTAACTCGTCATTAGCATCTGCTGAATCGAAAAAAGAACAATCAAAAGCACTCGAT
GATTGTAAAGAGGATAAGGGAAAAAAACTTAGCTGTGAAGTGAGAATCTGATTCCCTGTCGAAGGGTGATGAAGGAATAC
AATGCCTTTGCCAAAAGCAGCTATCACCATTCTTCCTTGGTCTTTGCTACTTCG--------------------------
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------------------------------------------------------CTATTTTAGTGTGAAAGAAGTCATCT
TCAAGGTTCAGTTATCAAGAGAGTACAAGATCACGTCT-TAGAGCATTTTCAATAAATGACGCGAATCTGGAGATGTAAA
ATTTACATCTTTAAAAAATACATTTTACATTT-AAAAAAGAACGAACTCTAACAGATGATAAATATTAAAGATGT-AAAA
AGGTAACTCCAATATAGATGATGCAAAGTGAAGATGTAAAATTGGCCGCCAGCCACGCGCCTGTGTACAGCCGCACAAAT
CGTAATACAACATCCCGAAAACAACTTCAAAATTTTCACATGTTCGCAATATCAAATTATTATATAATTCATCAAATCCA
CAATATCAAAATGGAACACAAATACAACAAAATTATTGCACAATAGAACAAACACGTAATGAAACTAGGCGTTTCTTTCA
TCATGCCATTTTCAATACTCCATCAAATCCTTTTGAAGTTGATCGTGCATGTCAGAGTCTTTAATTTCATTGTACACCTT
CATGAGACGTCTGATTCGCTCCTATTTTCTCATCGGCATAGCGCGTACGCCCATCAGATCATAGAAGGTGCAATTTAAAT
CCTGTCTACGCTCATTTTCAACAATCATATTTGGCGACTGATGGGCGCCGGTGCGCTGGCCCAAAGTTTCGGTCGGTCGT
GTC
>chr5D_215
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------------------------------------------------------GCCCTGATGCGTGATCGTAATCAGTC
GGTTGAGTAAAAGCG-------TTTTAAGAAGAAAAAAATACCACGCGCCCTGCCGTCCACGCCCACAGACTGGGTGTGG
ACTCTCCGTGGGCGCAACCCTCCACGCCCATAGAACCGA-GCCGGTGCGGCGGATAACCCTGCCACGCCATCGGCATGGT
CACATACACCAAACCAAGAGCCCAAGGAGAAGACGAAACGGCACGCTTCCCGTTCCATCATCAAACGTTCTGCCGCAACG
CTGTCTTATCTGGTCCGACTATTCTGCGCCCACACCTTATCTCCCTTGACGTCCTAGTCACCGCGCCGTCGACAAACCCA
CCAAAA-TCTCATCTGCGCATCTCCACTTTCACTCGCCTCCTTCCTTGTCAAGCGCACCCACCAAAATAGAGCTCGTAAT
GTACCACTGAT----TGATTTGGTTCGAACAATTT-ACACCTGCAAGGCCGCAACGTTAGAGTCA----AATCGTTTACC
CTAGAATCGAGCACGTAGAGTACGAAAACCTGGAGCTAGATTAGATTAGAGAATCTGATCGCGTCAGCAGTGAGTGTGTC
TTATCCATTAATAA---TTTAA------AAACACGTGAGGACGGCTAACACCGTCGTCGTCGT-----------------
-TAACCCGGCCTTGTGTTCCTGATGGACTCTGTCCAATCCGAGGTAAGGAAACGTTCCAGGTTACTGCTAAATTATTAGG
ATAAGATAAGATAAACGCGTGCGCCTAAACAAA----GTCGTTAAT-----------TGATTACTCACAGGAGCAACAGC
TTTCTTCTTCTCTCTCAGTTAAGGAAAACGGATAGGGACAGACGAGTCTCTCCTCATGGTCGTAGCAGGCCATGCCTATT
TAACCGCACCCGTCCGCTCTCCCCCA--------TCTTTCTCTCTCTCTCT--TCTTCTTCT------T---TCTCTTCA
GATCCCACAAAGCCCCAGACCCGGAGCAACTGACCAGCAAGTTATCGGGCATGGACGACGACGGCGACTGGATCACGGCG
AGGTACCTCCTCTCCTCCATCCTCGGCCGAAACCCGCTCGTCGTCGACCACGTCGACGAGGAGTCCTTCCCGGTCGACCA
CGCCCCCGCCGCCGCCGGCCGCGGCGGGCCGGCGGAGGCGCCGGCGTGGCAGCCGCCGCCGGCCGTGTTCGCGGCGCCGA
GCGTGGCCGGCACGGTGTGCGCGGTGTGCACGGAGGAGATCGCGGTGGCGGACCCCGTGGTGCGGCTGCCGTGCGCGCAC
TGGTACCACGCCGGCTGCATCGCGCCCTGGCTCGGGATCCGGAGCACCTGCCCCATGTGCCGCGCCGAGCTGCCGGCCAG
GGAGGAGGCCGGCGAGGCCGGCGCCG---TCGGCCGCGAGAAGCCCCCGCGCGCCGAGGCCGGGACCAGCGGCGCCGGCG
TGCGGCGGGACGCGTCGTCGTACGGGGGGTACGTCGCCGCCGGGGGCGTCCTGTCCGGCTGATGGACGGGCGCGCGGGCC
GTGGCGGAGTGCACGCGTCGTGTGCGCGCCATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTTTTTT--CTC--------GAGTGGTCCTCGATACTTGTTGTACAAATG---AAATGGTTAATTATT
AACATAATGTTGATTCTTGAGTGCTTAGCTCGTCATTAGCATCTGCTAAATCGAAAAAAAAACAAGGAAAAGCACTCGAT
GATTGTAAAGAGGAAAAGGGC---AAACGTAGCTGTGAAGTGAGAATCTGATTCCCTGTCGCAGGGTGATGAAGGAATAC
AATGCCTTTGCCAAAAACAGCTACC-CCATTCTTCCTTGGTCTTTGCTACT-----------------------------
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---------------------------------------------------GTACTATTTTAGTGTAAAAGAAGTCATCT
TCAAGGTTCGGTAACCAAGAGAGTACAAGATCACGTACCTAGAGCATCTTCAATAGATCATGCAAATTTGAAGCTGTAAA
ATTTACATCTTTAAAAAGTACATTTTACATTT-AGAAAAGAGCCAACTTCAACAAATGATGTATATTGAAGATGTAAAAA
AAGTAACTCCAAC--AGATGATACAAAATGGAGATATAAAACTGGCCGCCGGCCGCGCAACTGCGTGCAGCCGCGCGGAT
CGAAATAAAACGTCCCGAAAACAACTT-AAAAATTTCACATGTTCACAATATCATATTATTATATAATTCATTAAATCCA
CAACATCAAATGC-AACACAAATACAACAAAATTATTGCATTGTAGAACAAACAATTAATGAAACTAGGCGGCTCTTTCG
TCA------------------------------------TGATCGTGCGCATCGGAGTCTCTAATCTCATTGTACAGTCT
TATGAAACGTCTGATTCACTCCTATTTTCTCATCGGCATAACGCGTACGCCCATCAGATCATAGAAGGTGTAATCTAAAT
CTTGCCCACGCTCATTTTCAATGATCAT----------------------------------------------------
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>chr5A_250
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---------TGGGCAAAAGAGTTCATATAAAAAAATGAGAGACACGCGGCCTGCCCTCCACGCCCATAGATTGGGTGTGG
ACTCTCCGTGGGCGCGAGCCTCCACGCCCATAGAACTGAGGCCGGTGCGGCGGATAACCCTGCCACGCCATGGTCACGTA
CGTG--CACCAAACCAAGAGCCCAAGGAGAAGACGAAACGGCACGCTTCCTTTCCCATCATCAAACGTTCTGCCGCAACG
CTGTCTTATCTGGTCCGACTATTCTGCGCCCACACCTTATCTCCCTTGACGTCCTAGTCACCGCGCCGTCGACAAACCCA
CCCAAAATCTGATCCGCGCATCTCCACTTTCACTCGCCTCCTTCCTTGTCAAGCG-----------------------AT
GCACCACCGAT----TGATTTGGCTCAAACAAATTAACACCTGCAAGGCCGCGACGTTAGAGTGA----AC-CGTTTACC
CTAGAATCGAGCACGTAGAGTGCGAAAACCTGGAGCTAGAGTAGATTAGAGAACCTGATCGCGTCAGCAGTGAGTGTGTG
TTATCCATTAATAATAATTTAA------AATCGCGTGAGGACGGCTAACACCGTCGTCGTCGTCGTCGTCGT--------
-TAACCCGGCCTTGTGTTCCTGATGGACTCTGTCCAATCCGAGGTAAGGAAACGTTCCTGGTTACTGCCAAATTATTAGG
ATAAGATAAGATAAACGCGTGCGCCTAAACAAA----GTCGTTAAT-----------TGATTACTCACAGGGGCAACAGC
TTTCTTCTT----CTCAGTTAAAGAAAACGGATAGGGACAGACGAGTCTCTCCGCATGGTCGTAGCAGGCCATGCCTATT
TAATCGCACCCGTCCGCTCTCCCCCA--------TCTCTCTCTCTCTCTCTCTTCTTCTTCTTCTTCTTCGTTCTCTTCA
GATCCCCGGAAGCGCCAGACCCGGAGCAACTGAGCAGCAAGTTCTCGGGCATGGACGACGACGGCGACTGGATCGCGGCG
AGGTACCTCCTCTCCTCCATCCTCGGCCGGAACCCGCTCGTGGTCGACCACGTCGACGAGGAGTCCTTCCCGGTCGACCA
CGCCCCCGCCGCCGCCGCCCGCGGCGGGCCGGCGGAGGCGCCGGTGTGGCAGCAGCCGCCGGCTGTGTTCGCGGTGCCGA
GCCTGGCCGGCACTGTTTGCGCGGTGTGCACGGAGGAGATCGCGGTGGCGGACCCCGTGGTGCGGCTGCCGTGCGCGCAC
TGGTACCACGCCGGCTGCATCGCGCCCTGGCTCGGGATCCGGAGCACCTGCCCCATGTGCCGCGCCGAGCTGCCGGCCAG
GGAGGAGGCCGGCGGGGCCGGCGCCG---TCGGCCGCGAGAAGCCCCCGCGCGCCGAGGCCGGGACCAGCGCCGCCGGCG
TGCGGCGGGACGCGTCGTCGTACGGGGGGTACGTCGCCGCCGGGGGCGTCCTGTCCGGCTGATGGACGGGCGAGCGGGCC
GTGGTGGACCGCGT-CGTCGTGCGCGCGCCATGGCTTTTGTCTA------------------------------------
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------------TTTTTTT--CTTCGCCGGAGGAGTGCTGCTCGATACCTGTTGTACAAATGAAAAAATGGTTAATTATT
AACATGATGTTGATTCTTGAGGGCTTAACTCGTCATTAGCATCTGCTGAATAGAAAAAAGAAGAAGGAAAAGCACTCGAT
GATTGTAAAGAGGAAAAGGGAAAAAAA-TTAGCTGTGAAGTGAGAATCTGATTCCCTGTCGCAGGGTGATGAAGGAATAC
AATGCCTTTGCCAAAAGCAGCTATCACCATTCTTCCTTGGTCTATGCTACTCCCTCCGGTCCTCTTTTGTTTGCGTATAA
TTTTTTTCCGTTTTTCCCTGTTTAGTCTGCGCATCAGCTCTTTGTTGTGCTGCTCTTTGTTGTGCTGCTTTCCCTTGGTG
CCCTGCATCTGCCTCAGTAATTAACGGACGCATGCACGGCTGCAGCAGGACTCCAGCCAATCCAGAGCGGCATGCAGATG
GGCCCAAGCCATGCGCGTGGGGAAGAGAAAAGGGGACCAAAGGAGCCTCCCAATCACCCGCATGCAGCTATTGACTGGTT
GCATTGAGCAATTAAACTACCACATCTCTCCGATGCATGTACAGGGGCAATATAGTCCGAAAAAGATGCATGCAGTCCCT
CCTTGGTATCCGGGCTTCTCCTTATACGCAGAGAAAAAAGGACCGGAGGGAGTACTATTTTAGTGTAAAAGAAGTCATTT
TCAAGGTTCAGTAACCAAGAGAGTACAAGATCACGTAC--------------ATAAATGTTGCAAATTTAAAGATGTAAA
ATATACATCTTGAAAAAGTACATTTTACATTTCAAAAAAGAGCCAACTCCATCAGATAATGTATATTGAAGATGT-AAAA
AAGTAACTCCAAC--AGATGATGCAAAGTGAAGATGTAAAACAAAACAT-------------------------------
--------------CCGAAAAGAACTT-AAAATTTTCGCATGTTCACAATATCAAATTATTACATAATTCATCAAATCCA
CAACATCAAATGC-AACACAAATACAACAAAATTATTGCACAATAGAGCAAACAGTTAATGGAACTAGGCGGCTCTCTCG
TCATGCCATTTCCAATACTCCATCAAATCCTTCTGAAGTTGATCGTGTGCCTCGGAGTCTCTAATTACATTGGACACCTT
CATGAAACGTTTGATTCGCTCCTATTTTCTCATCGGCATAACACGTACGCCCATCAGATCATAGAAGGTGTAATTTAAAT
CATGTCCATGCTCATTTT--------------------------------------------------------------
---
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S------------S---------S
------SSS-----------------------------------------------------------------------
-------------------------------------------------------------------------S------
---------SS-S-------S-----------------------------------------------------------
-------------------------------------------------------------------------S------
-------------------------------S-----------SSSSSS-S-S------------------------S--
--------SSSSSSS----------------------------------S------S------SSSSSS-----------
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---------SSSSSS-SSS-SSSSSSSS-----------SS------------------SSSSSSS----SSSSSSSSSS
S---------------------S-------------S---S---------------------------------------
---------------------------------SSSS---------SSSSSSSSSSS--S----S---------------
-------SSSSSSS-S----------------------------------------------------------------
--------------------------SSSSSSSS----------------------------S-----------------
----------------------S-------------S-------------------S-----------------------
-----------------------------------S--------------------------------------------
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--------------------------SSS---------------------------------------------------
-------S----------SS--------S-----S-----S------------------------S------------S-
SSS----------------------------------------S------------------------------------
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-------------------SS-----------------------------------------------------------
-----------------------------------------------------------------SS-------------
--------------S----------------------------------------------S------------------
---------------------------------------------------S-S--------------------------
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------------------------------------------------------------------S-------------
------------S-S---------------------SS---------S------------S--S---S--S---------
-----------------S-----------------------S-S-----S----------SS-----S------------
-S----------SSS--------------------------S--------S---S---SS---S--S-------S-SS--
--S----S---S---------------S-----------------S----------------------------------
---S------SSSS----------------------------------------SS---------------SS------S
-----------S--------------------S---------------SSS--S------S-------------------
-----S----------------------------------S-----------------------------S---------
-S----S--------------SS-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS
>forward_193
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-------------CGGACGTTTGAGGATCGGAT-----------------------------------------------
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>reverse_1223
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----------------------AGAGCAACTGACCACCAAGT--------------------------------------
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>forward_421
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-GGTCACATACACGGACGAGG-----------------------------------------------------------
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>reverse_3104
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---------------------------------------------------------------TGTACAGCCGCACAAAT
CGT-----------------------------------------------------------------------------
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