Multiple sequence alignment - TraesCS5B01G156400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G156400 chr5B 100.000 2861 0 0 1 2861 288893905 288891045 0.000000e+00 5284.0
1 TraesCS5B01G156400 chr5B 83.784 148 20 4 1055 1200 118452182 118452327 1.380000e-28 137.0
2 TraesCS5B01G156400 chr5A 94.625 1842 60 17 521 2330 336949582 336951416 0.000000e+00 2817.0
3 TraesCS5B01G156400 chr5A 81.595 163 26 4 1040 1200 111588881 111589041 6.430000e-27 132.0
4 TraesCS5B01G156400 chr5D 94.238 1267 42 17 217 1463 254022587 254023842 0.000000e+00 1906.0
5 TraesCS5B01G156400 chr5D 94.027 904 41 3 1504 2395 254023852 254024754 0.000000e+00 1358.0
6 TraesCS5B01G156400 chr5D 92.887 239 12 5 1 235 254020466 254020703 2.730000e-90 342.0
7 TraesCS5B01G156400 chr5D 83.784 148 20 4 1055 1200 108103621 108103766 1.380000e-28 137.0
8 TraesCS5B01G156400 chr5D 89.855 69 5 2 2791 2859 254024737 254024803 1.410000e-13 87.9
9 TraesCS5B01G156400 chr1D 88.670 203 23 0 1017 1219 35060889 35060687 6.120000e-62 248.0
10 TraesCS5B01G156400 chr1A 88.670 203 23 0 1017 1219 33398707 33398505 6.120000e-62 248.0
11 TraesCS5B01G156400 chr1B 88.177 203 24 0 1017 1219 53365659 53365457 2.850000e-60 243.0
12 TraesCS5B01G156400 chr2A 78.689 183 37 2 1017 1198 738372130 738372311 1.390000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G156400 chr5B 288891045 288893905 2860 True 5284.000 5284 100.00000 1 2861 1 chr5B.!!$R1 2860
1 TraesCS5B01G156400 chr5A 336949582 336951416 1834 False 2817.000 2817 94.62500 521 2330 1 chr5A.!!$F2 1809
2 TraesCS5B01G156400 chr5D 254020466 254024803 4337 False 923.475 1906 92.75175 1 2859 4 chr5D.!!$F2 2858

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
385 2302 0.106419 AAAACTTGCCCCACTTCCGA 60.106 50.0 0.0 0.0 0.0 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2299 4258 1.131126 CTCAGTAAACGGCTGCCATTG 59.869 52.381 20.29 6.2 34.21 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 6.263842 TGCCATAATCTCAATTCAAGGACATC 59.736 38.462 0.00 0.00 0.00 3.06
65 66 7.016153 TCCTTCAAAGCCTACTTCAATAAGA 57.984 36.000 0.00 0.00 34.05 2.10
69 70 8.635765 TTCAAAGCCTACTTCAATAAGACATT 57.364 30.769 0.00 0.00 34.05 2.71
183 186 2.880890 TGCAAGAAGAAGTCCAAAGAGC 59.119 45.455 0.00 0.00 0.00 4.09
187 190 4.156455 AGAAGAAGTCCAAAGAGCAACA 57.844 40.909 0.00 0.00 0.00 3.33
235 239 8.579682 AAGAAAATAAATATGCTCATTTCCGC 57.420 30.769 0.20 0.00 30.84 5.54
237 241 7.864379 AGAAAATAAATATGCTCATTTCCGCAG 59.136 33.333 0.20 0.00 39.82 5.18
272 2179 8.532819 AGTCCTTCTTGTACCTTTCATAACTAG 58.467 37.037 0.00 0.00 0.00 2.57
354 2271 5.424121 AACACAACAGAGTTGATGTTAGC 57.576 39.130 15.99 0.00 38.14 3.09
356 2273 4.752101 ACACAACAGAGTTGATGTTAGCTC 59.248 41.667 15.99 0.00 38.14 4.09
357 2274 3.990469 ACAACAGAGTTGATGTTAGCTCG 59.010 43.478 15.99 0.00 37.03 5.03
359 2276 4.521130 ACAGAGTTGATGTTAGCTCGAA 57.479 40.909 0.00 0.00 33.70 3.71
360 2277 4.883083 ACAGAGTTGATGTTAGCTCGAAA 58.117 39.130 0.00 0.00 33.70 3.46
361 2278 5.297547 ACAGAGTTGATGTTAGCTCGAAAA 58.702 37.500 0.00 0.00 33.70 2.29
362 2279 5.406780 ACAGAGTTGATGTTAGCTCGAAAAG 59.593 40.000 0.00 0.00 33.70 2.27
385 2302 0.106419 AAAACTTGCCCCACTTCCGA 60.106 50.000 0.00 0.00 0.00 4.55
404 2321 5.182487 TCCGAATTCGAAATTCAATCCAGA 58.818 37.500 28.76 9.68 43.02 3.86
417 2334 8.877808 AATTCAATCCAGAAAAGTTTGTTCTC 57.122 30.769 0.00 0.00 32.96 2.87
418 2335 7.645058 TTCAATCCAGAAAAGTTTGTTCTCT 57.355 32.000 0.00 0.00 32.96 3.10
431 2348 6.211515 AGTTTGTTCTCTCATCATTGCAAAC 58.788 36.000 1.71 0.00 42.43 2.93
471 2390 0.955428 TCAGCCGAGCATGGTGAAAC 60.955 55.000 0.00 0.00 37.30 2.78
472 2391 1.073025 AGCCGAGCATGGTGAAACA 59.927 52.632 0.00 0.00 39.98 2.83
477 2396 1.197721 CGAGCATGGTGAAACAAGGAC 59.802 52.381 0.00 0.00 39.98 3.85
478 2397 1.197721 GAGCATGGTGAAACAAGGACG 59.802 52.381 0.00 0.00 39.98 4.79
487 2406 1.178534 AAACAAGGACGTGGCATGGG 61.179 55.000 12.05 0.00 0.00 4.00
516 2435 3.449377 TGTCCCGAGATGCATTTACTACA 59.551 43.478 0.00 0.00 0.00 2.74
518 2437 4.873827 GTCCCGAGATGCATTTACTACAAA 59.126 41.667 0.00 0.00 0.00 2.83
671 2594 6.952743 ACATTAATTTCAAAATGCACGCAAA 58.047 28.000 0.00 0.00 36.72 3.68
744 2672 5.373222 AGTGGCTAAATAAGTGTGTCAACA 58.627 37.500 0.00 0.00 0.00 3.33
818 2746 3.265791 CTGCTCACTGGAGTAATTGACC 58.734 50.000 0.00 0.00 43.37 4.02
1463 3399 7.520119 TTCTATTCGCGCATACCTATATTTG 57.480 36.000 8.75 0.00 0.00 2.32
1473 3409 7.603651 CGCATACCTATATTTGTTCCTCTACT 58.396 38.462 0.00 0.00 0.00 2.57
1476 3412 9.930693 CATACCTATATTTGTTCCTCTACTTCC 57.069 37.037 0.00 0.00 0.00 3.46
1631 3568 1.478837 CCAGCAGCAGGAATGGATGAT 60.479 52.381 0.00 0.00 34.60 2.45
1653 3590 0.107312 AGCAGCAGATGGTGATGGAC 60.107 55.000 15.78 0.00 43.24 4.02
1734 3671 5.280266 CGGTGGTATGAATAATATGACCCCA 60.280 44.000 0.00 0.00 0.00 4.96
1797 3734 1.745489 CCCTACAAAGAGCACCGGC 60.745 63.158 0.00 0.00 41.61 6.13
1842 3779 0.980423 GCTCCAAGTCCTCCTCTTGT 59.020 55.000 0.00 0.00 40.15 3.16
1938 3885 1.000274 GGTTTTCCTGGTGATGTGTGC 60.000 52.381 0.00 0.00 36.94 4.57
1978 3929 7.676683 TTAGTTATTCTTATGGACCTGCTCT 57.323 36.000 0.00 0.00 0.00 4.09
1980 3931 5.071115 AGTTATTCTTATGGACCTGCTCTCC 59.929 44.000 0.00 0.00 0.00 3.71
2230 4189 7.305418 GCTTGTTTCTACAATCAGTTCAAAACG 60.305 37.037 0.00 0.00 43.02 3.60
2265 4224 2.158885 GGTGGAAGATGCCTAGTTCCTC 60.159 54.545 9.70 6.61 40.49 3.71
2279 4238 0.675083 TTCCTCGTGTTTGCCTCGTA 59.325 50.000 0.00 0.00 0.00 3.43
2332 4291 4.085210 CGTTTACTGAGAACCGACTGAAAC 60.085 45.833 0.00 0.00 0.00 2.78
2340 4299 2.589798 ACCGACTGAAACGAACTCAA 57.410 45.000 0.00 0.00 0.00 3.02
2341 4300 2.896168 ACCGACTGAAACGAACTCAAA 58.104 42.857 0.00 0.00 0.00 2.69
2356 4315 4.385358 ACTCAAAAATGGCACGAAACTT 57.615 36.364 0.00 0.00 0.00 2.66
2367 4326 3.490078 GGCACGAAACTTGGAAAATGTGA 60.490 43.478 0.00 0.00 0.00 3.58
2382 4341 0.459489 TGTGAAAGTTTGCCCAGTGC 59.541 50.000 0.00 0.00 41.77 4.40
2383 4342 0.249447 GTGAAAGTTTGCCCAGTGCC 60.249 55.000 0.00 0.00 40.16 5.01
2384 4343 0.396974 TGAAAGTTTGCCCAGTGCCT 60.397 50.000 0.00 0.00 40.16 4.75
2385 4344 1.133637 TGAAAGTTTGCCCAGTGCCTA 60.134 47.619 0.00 0.00 40.16 3.93
2386 4345 1.541588 GAAAGTTTGCCCAGTGCCTAG 59.458 52.381 0.00 0.00 40.16 3.02
2387 4346 0.771127 AAGTTTGCCCAGTGCCTAGA 59.229 50.000 0.00 0.00 40.16 2.43
2388 4347 0.771127 AGTTTGCCCAGTGCCTAGAA 59.229 50.000 0.00 0.00 40.16 2.10
2389 4348 1.144913 AGTTTGCCCAGTGCCTAGAAA 59.855 47.619 0.00 0.00 40.16 2.52
2390 4349 1.960689 GTTTGCCCAGTGCCTAGAAAA 59.039 47.619 0.00 0.00 40.16 2.29
2391 4350 2.364002 GTTTGCCCAGTGCCTAGAAAAA 59.636 45.455 0.00 0.00 40.16 1.94
2392 4351 1.909700 TGCCCAGTGCCTAGAAAAAG 58.090 50.000 0.00 0.00 40.16 2.27
2393 4352 0.528017 GCCCAGTGCCTAGAAAAAGC 59.472 55.000 0.00 0.00 0.00 3.51
2394 4353 1.909700 CCCAGTGCCTAGAAAAAGCA 58.090 50.000 0.00 0.00 0.00 3.91
2395 4354 2.238521 CCCAGTGCCTAGAAAAAGCAA 58.761 47.619 0.00 0.00 38.45 3.91
2396 4355 2.029918 CCCAGTGCCTAGAAAAAGCAAC 60.030 50.000 0.00 0.00 38.45 4.17
2397 4356 2.887152 CCAGTGCCTAGAAAAAGCAACT 59.113 45.455 0.00 0.00 38.45 3.16
2398 4357 3.319122 CCAGTGCCTAGAAAAAGCAACTT 59.681 43.478 0.00 0.00 38.45 2.66
2399 4358 4.293415 CAGTGCCTAGAAAAAGCAACTTG 58.707 43.478 0.00 0.00 38.45 3.16
2400 4359 3.319122 AGTGCCTAGAAAAAGCAACTTGG 59.681 43.478 0.00 0.00 38.45 3.61
2401 4360 2.035832 TGCCTAGAAAAAGCAACTTGGC 59.964 45.455 0.00 0.00 46.65 4.52
2402 4361 2.922335 GCCTAGAAAAAGCAACTTGGCG 60.922 50.000 0.00 0.00 40.93 5.69
2403 4362 2.552315 CCTAGAAAAAGCAACTTGGCGA 59.448 45.455 0.00 0.00 39.27 5.54
2404 4363 2.492019 AGAAAAAGCAACTTGGCGAC 57.508 45.000 0.00 0.00 39.27 5.19
2405 4364 1.067060 AGAAAAAGCAACTTGGCGACC 59.933 47.619 0.00 0.00 39.27 4.79
2406 4365 0.820871 AAAAAGCAACTTGGCGACCA 59.179 45.000 0.00 0.00 39.27 4.02
2407 4366 1.039856 AAAAGCAACTTGGCGACCAT 58.960 45.000 0.00 0.00 39.27 3.55
2408 4367 1.904287 AAAGCAACTTGGCGACCATA 58.096 45.000 0.00 0.00 39.27 2.74
2409 4368 1.165270 AAGCAACTTGGCGACCATAC 58.835 50.000 0.00 0.00 39.27 2.39
2410 4369 0.036164 AGCAACTTGGCGACCATACA 59.964 50.000 0.00 0.00 39.27 2.29
2411 4370 0.878416 GCAACTTGGCGACCATACAA 59.122 50.000 0.00 0.00 31.53 2.41
2412 4371 1.135689 GCAACTTGGCGACCATACAAG 60.136 52.381 0.00 0.00 45.27 3.16
2413 4372 2.422597 CAACTTGGCGACCATACAAGA 58.577 47.619 10.25 0.00 43.13 3.02
2414 4373 2.094762 ACTTGGCGACCATACAAGAC 57.905 50.000 10.25 0.00 43.13 3.01
2415 4374 1.338769 ACTTGGCGACCATACAAGACC 60.339 52.381 10.25 0.00 43.13 3.85
2416 4375 0.035820 TTGGCGACCATACAAGACCC 60.036 55.000 0.00 0.00 31.53 4.46
2417 4376 1.520787 GGCGACCATACAAGACCCG 60.521 63.158 0.00 0.00 0.00 5.28
2418 4377 1.520787 GCGACCATACAAGACCCGG 60.521 63.158 0.00 0.00 0.00 5.73
2419 4378 1.952102 GCGACCATACAAGACCCGGA 61.952 60.000 0.73 0.00 0.00 5.14
2420 4379 0.533491 CGACCATACAAGACCCGGAA 59.467 55.000 0.73 0.00 0.00 4.30
2421 4380 1.066716 CGACCATACAAGACCCGGAAA 60.067 52.381 0.73 0.00 0.00 3.13
2422 4381 2.613474 CGACCATACAAGACCCGGAAAA 60.613 50.000 0.73 0.00 0.00 2.29
2423 4382 3.617284 GACCATACAAGACCCGGAAAAT 58.383 45.455 0.73 0.00 0.00 1.82
2424 4383 4.014406 GACCATACAAGACCCGGAAAATT 58.986 43.478 0.73 0.00 0.00 1.82
2425 4384 3.761752 ACCATACAAGACCCGGAAAATTG 59.238 43.478 0.73 5.00 0.00 2.32
2426 4385 3.428862 CCATACAAGACCCGGAAAATTGC 60.429 47.826 0.73 0.00 0.00 3.56
2427 4386 0.966179 ACAAGACCCGGAAAATTGCC 59.034 50.000 0.73 0.00 0.00 4.52
2428 4387 1.256812 CAAGACCCGGAAAATTGCCT 58.743 50.000 0.73 0.00 0.00 4.75
2429 4388 1.618343 CAAGACCCGGAAAATTGCCTT 59.382 47.619 0.73 0.00 0.00 4.35
2430 4389 1.545841 AGACCCGGAAAATTGCCTTC 58.454 50.000 0.73 0.00 0.00 3.46
2431 4390 0.170339 GACCCGGAAAATTGCCTTCG 59.830 55.000 0.73 0.00 0.00 3.79
2432 4391 0.538746 ACCCGGAAAATTGCCTTCGT 60.539 50.000 0.73 0.00 0.00 3.85
2433 4392 0.601057 CCCGGAAAATTGCCTTCGTT 59.399 50.000 0.73 0.00 0.00 3.85
2434 4393 1.000394 CCCGGAAAATTGCCTTCGTTT 60.000 47.619 0.73 0.00 0.00 3.60
2435 4394 2.058057 CCGGAAAATTGCCTTCGTTTG 58.942 47.619 0.00 0.00 0.00 2.93
2436 4395 1.455408 CGGAAAATTGCCTTCGTTTGC 59.545 47.619 0.00 0.00 0.00 3.68
2437 4396 1.455408 GGAAAATTGCCTTCGTTTGCG 59.545 47.619 0.00 0.00 39.92 4.85
2438 4397 2.389998 GAAAATTGCCTTCGTTTGCGA 58.610 42.857 0.00 0.00 46.36 5.10
2446 4405 3.637714 TCGTTTGCGAAGTCCTGC 58.362 55.556 0.00 0.00 44.92 4.85
2447 4406 1.069090 TCGTTTGCGAAGTCCTGCT 59.931 52.632 0.00 0.00 44.92 4.24
2448 4407 0.944311 TCGTTTGCGAAGTCCTGCTC 60.944 55.000 0.00 0.00 44.92 4.26
2449 4408 0.946221 CGTTTGCGAAGTCCTGCTCT 60.946 55.000 0.00 0.00 41.33 4.09
2450 4409 1.668919 CGTTTGCGAAGTCCTGCTCTA 60.669 52.381 0.00 0.00 41.33 2.43
2451 4410 1.996191 GTTTGCGAAGTCCTGCTCTAG 59.004 52.381 0.00 0.00 0.00 2.43
2453 4412 1.227118 GCGAAGTCCTGCTCTAGGC 60.227 63.158 0.00 0.00 46.87 3.93
2454 4413 1.064946 CGAAGTCCTGCTCTAGGCG 59.935 63.158 0.00 0.00 46.87 5.52
2455 4414 1.377366 CGAAGTCCTGCTCTAGGCGA 61.377 60.000 0.00 0.00 46.87 5.54
2456 4415 0.818296 GAAGTCCTGCTCTAGGCGAA 59.182 55.000 0.00 0.00 46.87 4.70
2457 4416 0.533032 AAGTCCTGCTCTAGGCGAAC 59.467 55.000 0.00 0.00 46.87 3.95
2458 4417 0.323908 AGTCCTGCTCTAGGCGAACT 60.324 55.000 0.00 0.00 46.87 3.01
2459 4418 0.101579 GTCCTGCTCTAGGCGAACTC 59.898 60.000 0.00 0.00 46.87 3.01
2460 4419 1.064946 CCTGCTCTAGGCGAACTCG 59.935 63.158 0.00 0.00 45.43 4.18
2461 4420 1.064946 CTGCTCTAGGCGAACTCGG 59.935 63.158 0.69 0.00 45.43 4.63
2469 4428 2.861006 GCGAACTCGGCAAAGGAC 59.139 61.111 0.69 0.00 40.23 3.85
2496 4455 4.051167 CCCATGCAGGCCAGGTGA 62.051 66.667 5.01 0.00 35.39 4.02
2497 4456 2.753043 CCATGCAGGCCAGGTGAC 60.753 66.667 5.01 0.00 0.00 3.67
2498 4457 3.129502 CATGCAGGCCAGGTGACG 61.130 66.667 5.01 0.00 0.00 4.35
2499 4458 4.415150 ATGCAGGCCAGGTGACGG 62.415 66.667 5.01 0.00 0.00 4.79
2501 4460 4.643387 GCAGGCCAGGTGACGGTT 62.643 66.667 5.01 0.00 0.00 4.44
2502 4461 2.669569 CAGGCCAGGTGACGGTTG 60.670 66.667 5.01 0.00 0.00 3.77
2503 4462 4.643387 AGGCCAGGTGACGGTTGC 62.643 66.667 5.01 0.00 0.00 4.17
2506 4465 3.345808 CCAGGTGACGGTTGCGTG 61.346 66.667 0.00 0.00 0.00 5.34
2507 4466 2.279851 CAGGTGACGGTTGCGTGA 60.280 61.111 0.00 0.00 0.00 4.35
2508 4467 2.279918 AGGTGACGGTTGCGTGAC 60.280 61.111 0.00 0.00 0.00 3.67
2509 4468 3.698463 GGTGACGGTTGCGTGACG 61.698 66.667 0.00 0.00 0.00 4.35
2510 4469 3.698463 GTGACGGTTGCGTGACGG 61.698 66.667 7.25 0.00 0.00 4.79
2529 4488 4.344865 GGGGCTGGCCTTTGTCGA 62.345 66.667 20.47 0.00 36.10 4.20
2530 4489 2.747855 GGGCTGGCCTTTGTCGAG 60.748 66.667 13.80 0.00 36.10 4.04
2531 4490 2.032681 GGCTGGCCTTTGTCGAGT 59.967 61.111 3.32 0.00 0.00 4.18
2532 4491 1.600916 GGCTGGCCTTTGTCGAGTT 60.601 57.895 3.32 0.00 0.00 3.01
2533 4492 1.172812 GGCTGGCCTTTGTCGAGTTT 61.173 55.000 3.32 0.00 0.00 2.66
2534 4493 0.238553 GCTGGCCTTTGTCGAGTTTC 59.761 55.000 3.32 0.00 0.00 2.78
2535 4494 0.875059 CTGGCCTTTGTCGAGTTTCC 59.125 55.000 3.32 0.00 0.00 3.13
2536 4495 0.181587 TGGCCTTTGTCGAGTTTCCA 59.818 50.000 3.32 0.00 0.00 3.53
2537 4496 0.591659 GGCCTTTGTCGAGTTTCCAC 59.408 55.000 0.00 0.00 0.00 4.02
2538 4497 1.594331 GCCTTTGTCGAGTTTCCACT 58.406 50.000 0.00 0.00 35.17 4.00
2539 4498 2.549349 GGCCTTTGTCGAGTTTCCACTA 60.549 50.000 0.00 0.00 31.22 2.74
2540 4499 3.135994 GCCTTTGTCGAGTTTCCACTAA 58.864 45.455 0.00 0.00 31.22 2.24
2541 4500 3.059120 GCCTTTGTCGAGTTTCCACTAAC 60.059 47.826 0.00 0.00 31.22 2.34
2542 4501 3.183775 CCTTTGTCGAGTTTCCACTAACG 59.816 47.826 0.00 0.00 31.22 3.18
2543 4502 3.713858 TTGTCGAGTTTCCACTAACGA 57.286 42.857 0.00 0.00 31.22 3.85
2544 4503 3.713858 TGTCGAGTTTCCACTAACGAA 57.286 42.857 0.00 0.00 32.68 3.85
2545 4504 4.044336 TGTCGAGTTTCCACTAACGAAA 57.956 40.909 0.00 0.00 32.68 3.46
2546 4505 4.431809 TGTCGAGTTTCCACTAACGAAAA 58.568 39.130 0.00 0.00 32.68 2.29
2547 4506 4.268405 TGTCGAGTTTCCACTAACGAAAAC 59.732 41.667 0.00 0.00 32.68 2.43
2548 4507 4.505556 GTCGAGTTTCCACTAACGAAAACT 59.494 41.667 0.00 0.00 42.86 2.66
2550 4509 5.003061 GAGTTTCCACTAACGAAAACTCG 57.997 43.478 10.10 0.00 44.26 4.18
2551 4510 3.805971 AGTTTCCACTAACGAAAACTCGG 59.194 43.478 0.00 0.00 37.37 4.63
2552 4511 3.457610 TTCCACTAACGAAAACTCGGT 57.542 42.857 0.00 0.00 37.45 4.69
2553 4512 4.582701 TTCCACTAACGAAAACTCGGTA 57.417 40.909 0.00 0.00 37.45 4.02
2559 4518 3.740631 AACGAAAACTCGGTAGACCTT 57.259 42.857 0.00 0.00 37.45 3.50
2560 4519 3.740631 ACGAAAACTCGGTAGACCTTT 57.259 42.857 0.00 0.00 37.45 3.11
2561 4520 4.853924 ACGAAAACTCGGTAGACCTTTA 57.146 40.909 0.00 0.00 37.45 1.85
2562 4521 5.397142 ACGAAAACTCGGTAGACCTTTAT 57.603 39.130 0.00 0.00 37.45 1.40
2563 4522 5.405797 ACGAAAACTCGGTAGACCTTTATC 58.594 41.667 0.00 0.00 37.45 1.75
2564 4523 5.047802 ACGAAAACTCGGTAGACCTTTATCA 60.048 40.000 0.00 0.00 37.45 2.15
2565 4524 6.040878 CGAAAACTCGGTAGACCTTTATCAT 58.959 40.000 0.00 0.00 0.00 2.45
2566 4525 6.534079 CGAAAACTCGGTAGACCTTTATCATT 59.466 38.462 0.00 0.00 0.00 2.57
2567 4526 7.064253 CGAAAACTCGGTAGACCTTTATCATTT 59.936 37.037 0.00 0.00 0.00 2.32
2568 4527 8.631480 AAAACTCGGTAGACCTTTATCATTTT 57.369 30.769 0.00 0.00 0.00 1.82
2569 4528 8.631480 AAACTCGGTAGACCTTTATCATTTTT 57.369 30.769 0.00 0.00 0.00 1.94
2570 4529 9.729281 AAACTCGGTAGACCTTTATCATTTTTA 57.271 29.630 0.00 0.00 0.00 1.52
2571 4530 9.729281 AACTCGGTAGACCTTTATCATTTTTAA 57.271 29.630 0.00 0.00 0.00 1.52
2572 4531 9.901172 ACTCGGTAGACCTTTATCATTTTTAAT 57.099 29.630 0.00 0.00 0.00 1.40
2599 4558 8.319143 TCTTAAATAAGGAAAGTCAAAGGTCG 57.681 34.615 0.62 0.00 34.14 4.79
2600 4559 7.935210 TCTTAAATAAGGAAAGTCAAAGGTCGT 59.065 33.333 0.62 0.00 34.14 4.34
2601 4560 6.555812 AAATAAGGAAAGTCAAAGGTCGTC 57.444 37.500 0.00 0.00 0.00 4.20
2602 4561 2.545537 AGGAAAGTCAAAGGTCGTCC 57.454 50.000 0.00 0.00 0.00 4.79
2603 4562 1.145803 GGAAAGTCAAAGGTCGTCCG 58.854 55.000 0.00 0.00 39.05 4.79
2604 4563 1.269936 GGAAAGTCAAAGGTCGTCCGA 60.270 52.381 0.00 0.00 39.05 4.55
2605 4564 2.059541 GAAAGTCAAAGGTCGTCCGAG 58.940 52.381 0.00 0.00 39.05 4.63
2606 4565 0.317479 AAGTCAAAGGTCGTCCGAGG 59.683 55.000 0.00 0.00 39.05 4.63
2607 4566 0.538977 AGTCAAAGGTCGTCCGAGGA 60.539 55.000 0.00 0.00 39.05 3.71
2608 4567 0.531200 GTCAAAGGTCGTCCGAGGAT 59.469 55.000 0.00 0.00 39.05 3.24
2609 4568 0.530744 TCAAAGGTCGTCCGAGGATG 59.469 55.000 5.00 5.00 39.05 3.51
2610 4569 1.084370 CAAAGGTCGTCCGAGGATGC 61.084 60.000 6.48 2.53 39.05 3.91
2611 4570 2.240162 AAAGGTCGTCCGAGGATGCC 62.240 60.000 6.48 10.59 39.05 4.40
2612 4571 3.458163 GGTCGTCCGAGGATGCCA 61.458 66.667 15.27 0.00 31.95 4.92
2613 4572 2.797278 GGTCGTCCGAGGATGCCAT 61.797 63.158 15.27 0.00 31.95 4.40
2614 4573 1.144057 GTCGTCCGAGGATGCCATT 59.856 57.895 6.48 0.00 0.00 3.16
2615 4574 0.876342 GTCGTCCGAGGATGCCATTC 60.876 60.000 6.48 0.00 0.00 2.67
2616 4575 1.043116 TCGTCCGAGGATGCCATTCT 61.043 55.000 6.48 0.00 0.00 2.40
2617 4576 0.598680 CGTCCGAGGATGCCATTCTC 60.599 60.000 2.61 2.61 0.00 2.87
2618 4577 0.465705 GTCCGAGGATGCCATTCTCA 59.534 55.000 13.38 0.00 0.00 3.27
2619 4578 0.465705 TCCGAGGATGCCATTCTCAC 59.534 55.000 13.38 0.00 0.00 3.51
2620 4579 0.467384 CCGAGGATGCCATTCTCACT 59.533 55.000 13.38 0.00 0.00 3.41
2621 4580 1.539929 CCGAGGATGCCATTCTCACTC 60.540 57.143 13.38 0.16 0.00 3.51
2622 4581 1.411977 CGAGGATGCCATTCTCACTCT 59.588 52.381 13.38 0.00 0.00 3.24
2623 4582 2.158986 CGAGGATGCCATTCTCACTCTT 60.159 50.000 13.38 0.00 0.00 2.85
2624 4583 3.681034 CGAGGATGCCATTCTCACTCTTT 60.681 47.826 13.38 0.00 0.00 2.52
2625 4584 3.618351 AGGATGCCATTCTCACTCTTTG 58.382 45.455 0.00 0.00 0.00 2.77
2626 4585 2.098770 GGATGCCATTCTCACTCTTTGC 59.901 50.000 0.00 0.00 0.00 3.68
2627 4586 1.538047 TGCCATTCTCACTCTTTGCC 58.462 50.000 0.00 0.00 0.00 4.52
2628 4587 0.449388 GCCATTCTCACTCTTTGCCG 59.551 55.000 0.00 0.00 0.00 5.69
2629 4588 1.945819 GCCATTCTCACTCTTTGCCGA 60.946 52.381 0.00 0.00 0.00 5.54
2630 4589 2.005451 CCATTCTCACTCTTTGCCGAG 58.995 52.381 0.00 0.00 37.07 4.63
2631 4590 2.613977 CCATTCTCACTCTTTGCCGAGT 60.614 50.000 0.00 0.00 44.72 4.18
2632 4591 3.368427 CCATTCTCACTCTTTGCCGAGTA 60.368 47.826 0.82 0.00 42.10 2.59
2633 4592 3.299340 TTCTCACTCTTTGCCGAGTAC 57.701 47.619 0.82 0.00 42.10 2.73
2634 4593 2.515854 TCTCACTCTTTGCCGAGTACT 58.484 47.619 0.00 0.00 42.10 2.73
2635 4594 2.229062 TCTCACTCTTTGCCGAGTACTG 59.771 50.000 0.00 0.00 42.10 2.74
2636 4595 1.071605 CACTCTTTGCCGAGTACTGC 58.928 55.000 0.00 0.00 42.10 4.40
2637 4596 0.969894 ACTCTTTGCCGAGTACTGCT 59.030 50.000 0.00 0.00 42.19 4.24
2638 4597 1.067495 ACTCTTTGCCGAGTACTGCTC 60.067 52.381 0.00 0.00 42.19 4.26
2647 4606 1.975660 GAGTACTGCTCGGAGGATCT 58.024 55.000 0.00 3.25 34.13 2.75
2648 4607 2.303175 GAGTACTGCTCGGAGGATCTT 58.697 52.381 0.00 0.00 34.13 2.40
2649 4608 2.028130 AGTACTGCTCGGAGGATCTTG 58.972 52.381 7.20 0.00 33.73 3.02
2650 4609 1.067821 GTACTGCTCGGAGGATCTTGG 59.932 57.143 7.20 0.00 33.73 3.61
2651 4610 1.227497 CTGCTCGGAGGATCTTGGC 60.227 63.158 7.20 0.00 33.73 4.52
2652 4611 1.964608 CTGCTCGGAGGATCTTGGCA 61.965 60.000 7.20 0.00 33.73 4.92
2653 4612 1.221840 GCTCGGAGGATCTTGGCAA 59.778 57.895 7.20 0.00 33.73 4.52
2654 4613 0.392998 GCTCGGAGGATCTTGGCAAA 60.393 55.000 7.20 0.00 33.73 3.68
2655 4614 1.373570 CTCGGAGGATCTTGGCAAAC 58.626 55.000 0.00 0.00 33.73 2.93
2656 4615 0.690192 TCGGAGGATCTTGGCAAACA 59.310 50.000 0.00 0.00 33.73 2.83
2657 4616 1.281867 TCGGAGGATCTTGGCAAACAT 59.718 47.619 0.00 0.00 33.73 2.71
2658 4617 2.094675 CGGAGGATCTTGGCAAACATT 58.905 47.619 0.00 0.00 33.73 2.71
2659 4618 2.493278 CGGAGGATCTTGGCAAACATTT 59.507 45.455 0.00 0.00 33.73 2.32
2660 4619 3.428045 CGGAGGATCTTGGCAAACATTTC 60.428 47.826 0.00 0.00 33.73 2.17
2661 4620 3.766051 GGAGGATCTTGGCAAACATTTCT 59.234 43.478 0.00 0.00 33.73 2.52
2662 4621 4.221482 GGAGGATCTTGGCAAACATTTCTT 59.779 41.667 0.00 0.00 33.73 2.52
2663 4622 5.143376 AGGATCTTGGCAAACATTTCTTG 57.857 39.130 0.00 0.00 0.00 3.02
2664 4623 4.590222 AGGATCTTGGCAAACATTTCTTGT 59.410 37.500 0.00 0.00 41.53 3.16
2665 4624 9.567931 GGAGGATCTTGGCAAACATTTCTTGTT 62.568 40.741 0.00 0.00 42.64 2.83
2690 4649 2.951229 CACTAGTGTGACCCCCTTTT 57.049 50.000 15.06 0.00 46.55 2.27
2691 4650 2.504367 CACTAGTGTGACCCCCTTTTG 58.496 52.381 15.06 0.00 46.55 2.44
2692 4651 1.202891 ACTAGTGTGACCCCCTTTTGC 60.203 52.381 0.00 0.00 0.00 3.68
2693 4652 0.111639 TAGTGTGACCCCCTTTTGCC 59.888 55.000 0.00 0.00 0.00 4.52
2694 4653 2.203422 TGTGACCCCCTTTTGCCG 60.203 61.111 0.00 0.00 0.00 5.69
2695 4654 2.114411 GTGACCCCCTTTTGCCGA 59.886 61.111 0.00 0.00 0.00 5.54
2696 4655 1.971695 GTGACCCCCTTTTGCCGAG 60.972 63.158 0.00 0.00 0.00 4.63
2697 4656 2.434774 GACCCCCTTTTGCCGAGT 59.565 61.111 0.00 0.00 0.00 4.18
2698 4657 1.228459 GACCCCCTTTTGCCGAGTT 60.228 57.895 0.00 0.00 0.00 3.01
2699 4658 1.228459 ACCCCCTTTTGCCGAGTTC 60.228 57.895 0.00 0.00 0.00 3.01
2700 4659 1.228429 CCCCCTTTTGCCGAGTTCA 60.228 57.895 0.00 0.00 0.00 3.18
2701 4660 1.244019 CCCCCTTTTGCCGAGTTCAG 61.244 60.000 0.00 0.00 0.00 3.02
2702 4661 0.250727 CCCCTTTTGCCGAGTTCAGA 60.251 55.000 0.00 0.00 0.00 3.27
2703 4662 1.160137 CCCTTTTGCCGAGTTCAGAG 58.840 55.000 0.00 0.00 0.00 3.35
2704 4663 0.519077 CCTTTTGCCGAGTTCAGAGC 59.481 55.000 0.00 0.00 0.00 4.09
2705 4664 1.517242 CTTTTGCCGAGTTCAGAGCT 58.483 50.000 0.00 0.00 0.00 4.09
2706 4665 1.462670 CTTTTGCCGAGTTCAGAGCTC 59.537 52.381 5.27 5.27 0.00 4.09
2711 4670 4.996976 GAGTTCAGAGCTCGGCAA 57.003 55.556 9.22 2.15 0.00 4.52
2712 4671 3.450028 GAGTTCAGAGCTCGGCAAT 57.550 52.632 9.22 0.00 0.00 3.56
2713 4672 1.285578 GAGTTCAGAGCTCGGCAATC 58.714 55.000 9.22 3.44 0.00 2.67
2714 4673 0.459237 AGTTCAGAGCTCGGCAATCG 60.459 55.000 9.22 0.00 40.90 3.34
2715 4674 0.737715 GTTCAGAGCTCGGCAATCGT 60.738 55.000 9.22 0.00 40.32 3.73
2716 4675 0.037326 TTCAGAGCTCGGCAATCGTT 60.037 50.000 9.22 0.00 40.32 3.85
2717 4676 0.458543 TCAGAGCTCGGCAATCGTTC 60.459 55.000 9.22 0.00 40.32 3.95
2718 4677 0.459237 CAGAGCTCGGCAATCGTTCT 60.459 55.000 8.37 0.00 40.32 3.01
2719 4678 1.103803 AGAGCTCGGCAATCGTTCTA 58.896 50.000 8.37 0.00 40.32 2.10
2720 4679 1.683917 AGAGCTCGGCAATCGTTCTAT 59.316 47.619 8.37 0.00 40.32 1.98
2721 4680 2.055100 GAGCTCGGCAATCGTTCTATC 58.945 52.381 0.00 0.00 40.32 2.08
2722 4681 1.683917 AGCTCGGCAATCGTTCTATCT 59.316 47.619 0.00 0.00 40.32 1.98
2723 4682 2.885266 AGCTCGGCAATCGTTCTATCTA 59.115 45.455 0.00 0.00 40.32 1.98
2724 4683 3.508012 AGCTCGGCAATCGTTCTATCTAT 59.492 43.478 0.00 0.00 40.32 1.98
2725 4684 4.700692 AGCTCGGCAATCGTTCTATCTATA 59.299 41.667 0.00 0.00 40.32 1.31
2726 4685 5.358442 AGCTCGGCAATCGTTCTATCTATAT 59.642 40.000 0.00 0.00 40.32 0.86
2727 4686 6.037098 GCTCGGCAATCGTTCTATCTATATT 58.963 40.000 0.00 0.00 40.32 1.28
2728 4687 6.197468 GCTCGGCAATCGTTCTATCTATATTC 59.803 42.308 0.00 0.00 40.32 1.75
2729 4688 7.392494 TCGGCAATCGTTCTATCTATATTCT 57.608 36.000 0.00 0.00 40.32 2.40
2730 4689 7.827701 TCGGCAATCGTTCTATCTATATTCTT 58.172 34.615 0.00 0.00 40.32 2.52
2731 4690 8.304596 TCGGCAATCGTTCTATCTATATTCTTT 58.695 33.333 0.00 0.00 40.32 2.52
2732 4691 8.926710 CGGCAATCGTTCTATCTATATTCTTTT 58.073 33.333 0.00 0.00 0.00 2.27
2742 4701 9.836864 TCTATCTATATTCTTTTCAAAGCTGCA 57.163 29.630 1.02 0.00 35.99 4.41
2746 4705 9.630098 TCTATATTCTTTTCAAAGCTGCAAAAG 57.370 29.630 13.64 13.64 38.12 2.27
2747 4706 9.415544 CTATATTCTTTTCAAAGCTGCAAAAGT 57.584 29.630 17.21 6.90 38.02 2.66
2748 4707 6.594284 ATTCTTTTCAAAGCTGCAAAAGTC 57.406 33.333 17.21 0.00 38.02 3.01
2749 4708 5.070770 TCTTTTCAAAGCTGCAAAAGTCA 57.929 34.783 17.21 3.00 38.02 3.41
2750 4709 5.104374 TCTTTTCAAAGCTGCAAAAGTCAG 58.896 37.500 17.21 1.81 38.02 3.51
2751 4710 3.441496 TTCAAAGCTGCAAAAGTCAGG 57.559 42.857 1.02 0.00 32.41 3.86
2752 4711 2.653726 TCAAAGCTGCAAAAGTCAGGA 58.346 42.857 1.02 0.00 32.41 3.86
2753 4712 2.620115 TCAAAGCTGCAAAAGTCAGGAG 59.380 45.455 1.02 0.00 32.41 3.69
2754 4713 2.355010 AAGCTGCAAAAGTCAGGAGT 57.645 45.000 1.02 0.00 32.41 3.85
2755 4714 1.889545 AGCTGCAAAAGTCAGGAGTC 58.110 50.000 1.02 0.00 32.41 3.36
2756 4715 1.141657 AGCTGCAAAAGTCAGGAGTCA 59.858 47.619 1.02 0.00 32.41 3.41
2757 4716 1.265365 GCTGCAAAAGTCAGGAGTCAC 59.735 52.381 0.00 0.00 32.41 3.67
2758 4717 2.564771 CTGCAAAAGTCAGGAGTCACA 58.435 47.619 0.00 0.00 0.00 3.58
2759 4718 2.945008 CTGCAAAAGTCAGGAGTCACAA 59.055 45.455 0.00 0.00 0.00 3.33
2760 4719 2.945008 TGCAAAAGTCAGGAGTCACAAG 59.055 45.455 0.00 0.00 0.00 3.16
2761 4720 2.291741 GCAAAAGTCAGGAGTCACAAGG 59.708 50.000 0.00 0.00 0.00 3.61
2762 4721 3.545703 CAAAAGTCAGGAGTCACAAGGT 58.454 45.455 0.00 0.00 0.00 3.50
2763 4722 2.918712 AAGTCAGGAGTCACAAGGTG 57.081 50.000 0.00 0.00 34.45 4.00
2764 4723 1.794714 AGTCAGGAGTCACAAGGTGT 58.205 50.000 0.00 0.00 34.79 4.16
2765 4724 2.119495 AGTCAGGAGTCACAAGGTGTT 58.881 47.619 0.00 0.00 34.79 3.32
2766 4725 2.158900 AGTCAGGAGTCACAAGGTGTTG 60.159 50.000 0.00 0.00 39.82 3.33
2767 4726 0.947244 CAGGAGTCACAAGGTGTTGC 59.053 55.000 0.00 0.00 37.14 4.17
2768 4727 0.179018 AGGAGTCACAAGGTGTTGCC 60.179 55.000 0.00 0.00 37.14 4.52
2769 4728 0.465460 GGAGTCACAAGGTGTTGCCA 60.465 55.000 0.00 0.00 40.61 4.92
2770 4729 0.663153 GAGTCACAAGGTGTTGCCAC 59.337 55.000 0.00 0.00 40.61 5.01
2771 4730 0.034574 AGTCACAAGGTGTTGCCACA 60.035 50.000 0.00 0.00 43.71 4.17
2772 4731 1.032014 GTCACAAGGTGTTGCCACAT 58.968 50.000 0.00 0.00 43.71 3.21
2773 4732 1.031235 TCACAAGGTGTTGCCACATG 58.969 50.000 0.00 0.00 43.71 3.21
2774 4733 0.032403 CACAAGGTGTTGCCACATGG 59.968 55.000 0.00 0.00 43.71 3.66
2793 4752 1.312815 GCACCTTTGCTGAGTTCAGT 58.687 50.000 10.57 0.00 46.17 3.41
2794 4753 1.002033 GCACCTTTGCTGAGTTCAGTG 60.002 52.381 10.57 2.52 46.17 3.66
2795 4754 1.002033 CACCTTTGCTGAGTTCAGTGC 60.002 52.381 10.57 0.00 45.45 4.40
2798 4757 2.216046 CTTTGCTGAGTTCAGTGCTCA 58.784 47.619 10.57 1.20 45.45 4.26
2800 4759 1.586422 TGCTGAGTTCAGTGCTCAAC 58.414 50.000 10.57 0.00 45.45 3.18
2803 4762 2.286654 GCTGAGTTCAGTGCTCAACAAC 60.287 50.000 10.57 0.00 45.45 3.32
2808 4767 2.042686 TCAGTGCTCAACAACAAGCT 57.957 45.000 0.00 0.00 39.31 3.74
2826 4785 0.110373 CTTGTTACCGAGTTTGGCGC 60.110 55.000 0.00 0.00 0.00 6.53
2827 4786 1.508808 TTGTTACCGAGTTTGGCGCC 61.509 55.000 22.73 22.73 0.00 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 7.016072 AGGATAGTAGGATGTCCTTGAATTGAG 59.984 40.741 6.92 0.00 46.09 3.02
34 35 6.098409 TGAAGTAGGCTTTGAAGGATAGTAGG 59.902 42.308 0.00 0.00 34.61 3.18
93 95 2.336088 CCAAACTGCCAAGTGCCG 59.664 61.111 0.00 0.00 40.16 5.69
139 141 7.549134 TGCATCAAAATAAGTTAGATCGAGTGT 59.451 33.333 0.00 0.00 0.00 3.55
209 212 9.034544 GCGGAAATGAGCATATTTATTTTCTTT 57.965 29.630 0.00 0.00 30.78 2.52
368 2285 0.112412 ATTCGGAAGTGGGGCAAGTT 59.888 50.000 0.00 0.00 0.00 2.66
385 2302 9.546428 AAACTTTTCTGGATTGAATTTCGAATT 57.454 25.926 0.00 0.00 0.00 2.17
404 2321 6.808829 TGCAATGATGAGAGAACAAACTTTT 58.191 32.000 0.00 0.00 0.00 2.27
417 2334 5.048224 AGGAAGAGTTGTTTGCAATGATGAG 60.048 40.000 0.00 0.00 36.92 2.90
418 2335 4.828939 AGGAAGAGTTGTTTGCAATGATGA 59.171 37.500 0.00 0.00 36.92 2.92
431 2348 6.147985 GCTGAGTTTTACCTAAGGAAGAGTTG 59.852 42.308 0.00 0.00 0.00 3.16
471 2390 3.443045 GCCCATGCCACGTCCTTG 61.443 66.667 0.00 0.00 0.00 3.61
472 2391 3.505790 TTGCCCATGCCACGTCCTT 62.506 57.895 0.00 0.00 36.33 3.36
477 2396 1.446445 CATTGTTGCCCATGCCACG 60.446 57.895 0.00 0.00 35.96 4.94
478 2397 0.390209 GACATTGTTGCCCATGCCAC 60.390 55.000 0.00 0.00 36.33 5.01
487 2406 0.099436 GCATCTCGGGACATTGTTGC 59.901 55.000 0.00 0.00 0.00 4.17
498 2417 7.471721 TGAATTTTGTAGTAAATGCATCTCGG 58.528 34.615 0.00 0.00 29.92 4.63
518 2437 9.840427 CTCCACGTGTAGATAAAATTTTGAATT 57.160 29.630 15.65 0.00 0.00 2.17
666 2589 0.318107 CACAGCTGGGACTTTTTGCG 60.318 55.000 19.93 0.00 0.00 4.85
744 2672 2.223829 CGGTGAACTGTCAGAGTCAAGT 60.224 50.000 6.91 0.00 33.27 3.16
1430 3364 8.464404 AGGTATGCGCGAATAGAAATTACTATA 58.536 33.333 12.10 0.00 33.42 1.31
1431 3365 7.321153 AGGTATGCGCGAATAGAAATTACTAT 58.679 34.615 12.10 0.00 34.98 2.12
1432 3366 6.684686 AGGTATGCGCGAATAGAAATTACTA 58.315 36.000 12.10 0.00 0.00 1.82
1463 3399 6.347859 TCTTCAGAAAGGAAGTAGAGGAAC 57.652 41.667 0.00 0.00 43.72 3.62
1653 3590 5.101628 ACACTGTTGTTAATGTTGCTGTTG 58.898 37.500 0.00 0.00 28.43 3.33
1842 3779 2.054799 AGCTAGTTTGTGGAGGTGGAA 58.945 47.619 0.00 0.00 0.00 3.53
1960 3911 3.645687 GAGGAGAGCAGGTCCATAAGAAT 59.354 47.826 0.00 0.00 36.43 2.40
1963 3914 2.676748 AGAGGAGAGCAGGTCCATAAG 58.323 52.381 0.00 0.00 36.43 1.73
1978 3929 2.688446 CACTGCTCACCGTATTAGAGGA 59.312 50.000 0.00 0.00 0.00 3.71
1980 3931 3.119459 ACACACTGCTCACCGTATTAGAG 60.119 47.826 0.00 0.00 0.00 2.43
2178 4137 6.830324 AGGATGCAAATATGACAATGTGTACT 59.170 34.615 0.00 0.00 0.00 2.73
2230 4189 2.325583 TCCACCGATTCCAGTATTGC 57.674 50.000 0.00 0.00 0.00 3.56
2289 4248 1.377725 CTGCCATTGCCGACTTCCT 60.378 57.895 0.00 0.00 36.33 3.36
2299 4258 1.131126 CTCAGTAAACGGCTGCCATTG 59.869 52.381 20.29 6.20 34.21 2.82
2332 4291 2.679355 TCGTGCCATTTTTGAGTTCG 57.321 45.000 0.00 0.00 0.00 3.95
2340 4299 3.810310 TTCCAAGTTTCGTGCCATTTT 57.190 38.095 0.00 0.00 0.00 1.82
2341 4300 3.810310 TTTCCAAGTTTCGTGCCATTT 57.190 38.095 0.00 0.00 0.00 2.32
2356 4315 3.198635 TGGGCAAACTTTCACATTTTCCA 59.801 39.130 0.00 0.00 0.00 3.53
2382 4341 2.552315 TCGCCAAGTTGCTTTTTCTAGG 59.448 45.455 0.00 0.00 0.00 3.02
2383 4342 3.555518 GTCGCCAAGTTGCTTTTTCTAG 58.444 45.455 0.00 0.00 0.00 2.43
2384 4343 2.292292 GGTCGCCAAGTTGCTTTTTCTA 59.708 45.455 0.00 0.00 0.00 2.10
2385 4344 1.067060 GGTCGCCAAGTTGCTTTTTCT 59.933 47.619 0.00 0.00 0.00 2.52
2386 4345 1.202359 TGGTCGCCAAGTTGCTTTTTC 60.202 47.619 0.00 0.00 0.00 2.29
2387 4346 0.820871 TGGTCGCCAAGTTGCTTTTT 59.179 45.000 0.00 0.00 0.00 1.94
2388 4347 1.039856 ATGGTCGCCAAGTTGCTTTT 58.960 45.000 0.00 0.00 36.95 2.27
2389 4348 1.539827 GTATGGTCGCCAAGTTGCTTT 59.460 47.619 0.00 0.00 36.95 3.51
2390 4349 1.165270 GTATGGTCGCCAAGTTGCTT 58.835 50.000 0.00 0.00 36.95 3.91
2391 4350 0.036164 TGTATGGTCGCCAAGTTGCT 59.964 50.000 0.00 0.00 36.95 3.91
2392 4351 0.878416 TTGTATGGTCGCCAAGTTGC 59.122 50.000 0.00 0.00 36.95 4.17
2393 4352 2.159627 GTCTTGTATGGTCGCCAAGTTG 59.840 50.000 2.68 0.00 36.95 3.16
2394 4353 2.423577 GTCTTGTATGGTCGCCAAGTT 58.576 47.619 2.68 0.00 36.95 2.66
2395 4354 1.338769 GGTCTTGTATGGTCGCCAAGT 60.339 52.381 2.68 0.00 36.95 3.16
2396 4355 1.369625 GGTCTTGTATGGTCGCCAAG 58.630 55.000 2.68 0.00 36.95 3.61
2397 4356 0.035820 GGGTCTTGTATGGTCGCCAA 60.036 55.000 2.68 0.00 36.95 4.52
2398 4357 1.600107 GGGTCTTGTATGGTCGCCA 59.400 57.895 1.01 1.01 38.19 5.69
2399 4358 1.520787 CGGGTCTTGTATGGTCGCC 60.521 63.158 0.00 0.00 0.00 5.54
2400 4359 1.520787 CCGGGTCTTGTATGGTCGC 60.521 63.158 0.00 0.00 0.00 5.19
2401 4360 0.533491 TTCCGGGTCTTGTATGGTCG 59.467 55.000 0.00 0.00 0.00 4.79
2402 4361 2.773993 TTTCCGGGTCTTGTATGGTC 57.226 50.000 0.00 0.00 0.00 4.02
2403 4362 3.732048 ATTTTCCGGGTCTTGTATGGT 57.268 42.857 0.00 0.00 0.00 3.55
2404 4363 3.428862 GCAATTTTCCGGGTCTTGTATGG 60.429 47.826 0.00 0.00 0.00 2.74
2405 4364 3.428862 GGCAATTTTCCGGGTCTTGTATG 60.429 47.826 0.00 0.00 0.00 2.39
2406 4365 2.758423 GGCAATTTTCCGGGTCTTGTAT 59.242 45.455 0.00 0.00 0.00 2.29
2407 4366 2.164338 GGCAATTTTCCGGGTCTTGTA 58.836 47.619 0.00 0.00 0.00 2.41
2408 4367 0.966179 GGCAATTTTCCGGGTCTTGT 59.034 50.000 0.00 0.00 0.00 3.16
2409 4368 1.256812 AGGCAATTTTCCGGGTCTTG 58.743 50.000 0.00 2.02 0.00 3.02
2410 4369 1.893137 GAAGGCAATTTTCCGGGTCTT 59.107 47.619 0.00 0.00 0.00 3.01
2411 4370 1.545841 GAAGGCAATTTTCCGGGTCT 58.454 50.000 0.00 0.00 0.00 3.85
2412 4371 0.170339 CGAAGGCAATTTTCCGGGTC 59.830 55.000 0.00 0.00 0.00 4.46
2413 4372 0.538746 ACGAAGGCAATTTTCCGGGT 60.539 50.000 0.00 0.00 0.00 5.28
2414 4373 0.601057 AACGAAGGCAATTTTCCGGG 59.399 50.000 0.00 0.00 0.00 5.73
2415 4374 2.058057 CAAACGAAGGCAATTTTCCGG 58.942 47.619 0.00 0.00 0.00 5.14
2416 4375 1.455408 GCAAACGAAGGCAATTTTCCG 59.545 47.619 0.00 0.00 0.00 4.30
2417 4376 1.455408 CGCAAACGAAGGCAATTTTCC 59.545 47.619 0.00 0.00 43.93 3.13
2418 4377 2.835475 CGCAAACGAAGGCAATTTTC 57.165 45.000 0.00 0.00 43.93 2.29
2430 4389 0.946221 AGAGCAGGACTTCGCAAACG 60.946 55.000 0.00 0.00 42.01 3.60
2431 4390 1.996191 CTAGAGCAGGACTTCGCAAAC 59.004 52.381 0.00 0.00 0.00 2.93
2432 4391 2.370281 CTAGAGCAGGACTTCGCAAA 57.630 50.000 0.00 0.00 0.00 3.68
2443 4402 1.064946 CCGAGTTCGCCTAGAGCAG 59.935 63.158 0.00 0.00 44.04 4.24
2444 4403 3.064987 GCCGAGTTCGCCTAGAGCA 62.065 63.158 0.00 0.00 44.04 4.26
2445 4404 2.278923 GCCGAGTTCGCCTAGAGC 60.279 66.667 0.00 0.00 38.18 4.09
2446 4405 0.108804 TTTGCCGAGTTCGCCTAGAG 60.109 55.000 0.00 0.00 38.18 2.43
2447 4406 0.108804 CTTTGCCGAGTTCGCCTAGA 60.109 55.000 0.00 0.00 38.18 2.43
2448 4407 1.084370 CCTTTGCCGAGTTCGCCTAG 61.084 60.000 0.00 0.00 38.18 3.02
2449 4408 1.079405 CCTTTGCCGAGTTCGCCTA 60.079 57.895 0.00 0.00 38.18 3.93
2450 4409 2.358737 CCTTTGCCGAGTTCGCCT 60.359 61.111 0.00 0.00 38.18 5.52
2451 4410 2.358247 TCCTTTGCCGAGTTCGCC 60.358 61.111 0.00 0.00 38.18 5.54
2452 4411 2.861006 GTCCTTTGCCGAGTTCGC 59.139 61.111 0.00 0.00 38.18 4.70
2453 4412 2.380410 CCGTCCTTTGCCGAGTTCG 61.380 63.158 0.00 0.00 39.44 3.95
2454 4413 0.601841 TTCCGTCCTTTGCCGAGTTC 60.602 55.000 0.00 0.00 0.00 3.01
2455 4414 0.883370 GTTCCGTCCTTTGCCGAGTT 60.883 55.000 0.00 0.00 0.00 3.01
2456 4415 1.301479 GTTCCGTCCTTTGCCGAGT 60.301 57.895 0.00 0.00 0.00 4.18
2457 4416 2.380410 CGTTCCGTCCTTTGCCGAG 61.380 63.158 0.00 0.00 0.00 4.63
2458 4417 2.356553 CGTTCCGTCCTTTGCCGA 60.357 61.111 0.00 0.00 0.00 5.54
2459 4418 3.419759 CCGTTCCGTCCTTTGCCG 61.420 66.667 0.00 0.00 0.00 5.69
2460 4419 3.053896 CCCGTTCCGTCCTTTGCC 61.054 66.667 0.00 0.00 0.00 4.52
2461 4420 3.733960 GCCCGTTCCGTCCTTTGC 61.734 66.667 0.00 0.00 0.00 3.68
2462 4421 3.053896 GGCCCGTTCCGTCCTTTG 61.054 66.667 0.00 0.00 0.00 2.77
2463 4422 4.340246 GGGCCCGTTCCGTCCTTT 62.340 66.667 5.69 0.00 0.00 3.11
2479 4438 4.051167 TCACCTGGCCTGCATGGG 62.051 66.667 3.32 0.00 36.00 4.00
2480 4439 2.753043 GTCACCTGGCCTGCATGG 60.753 66.667 3.32 0.81 39.35 3.66
2481 4440 3.129502 CGTCACCTGGCCTGCATG 61.130 66.667 3.32 5.00 0.00 4.06
2482 4441 4.415150 CCGTCACCTGGCCTGCAT 62.415 66.667 3.32 0.00 0.00 3.96
2484 4443 4.643387 AACCGTCACCTGGCCTGC 62.643 66.667 3.32 0.00 0.00 4.85
2485 4444 2.669569 CAACCGTCACCTGGCCTG 60.670 66.667 3.32 2.54 0.00 4.85
2486 4445 4.643387 GCAACCGTCACCTGGCCT 62.643 66.667 3.32 0.00 0.00 5.19
2489 4448 3.345808 CACGCAACCGTCACCTGG 61.346 66.667 0.00 0.00 46.39 4.45
2490 4449 2.279851 TCACGCAACCGTCACCTG 60.280 61.111 0.00 0.00 46.39 4.00
2491 4450 2.279918 GTCACGCAACCGTCACCT 60.280 61.111 0.00 0.00 46.39 4.00
2492 4451 3.698463 CGTCACGCAACCGTCACC 61.698 66.667 0.00 0.00 46.39 4.02
2493 4452 3.698463 CCGTCACGCAACCGTCAC 61.698 66.667 0.00 0.00 46.39 3.67
2512 4471 4.344865 TCGACAAAGGCCAGCCCC 62.345 66.667 5.01 0.00 36.58 5.80
2513 4472 2.747855 CTCGACAAAGGCCAGCCC 60.748 66.667 5.01 0.00 36.58 5.19
2514 4473 1.172812 AAACTCGACAAAGGCCAGCC 61.173 55.000 5.01 0.00 0.00 4.85
2515 4474 0.238553 GAAACTCGACAAAGGCCAGC 59.761 55.000 5.01 0.00 0.00 4.85
2516 4475 0.875059 GGAAACTCGACAAAGGCCAG 59.125 55.000 5.01 0.00 0.00 4.85
2517 4476 0.181587 TGGAAACTCGACAAAGGCCA 59.818 50.000 5.01 0.00 0.00 5.36
2518 4477 0.591659 GTGGAAACTCGACAAAGGCC 59.408 55.000 0.00 0.00 0.00 5.19
2519 4478 1.594331 AGTGGAAACTCGACAAAGGC 58.406 50.000 0.00 0.00 0.00 4.35
2520 4479 3.183775 CGTTAGTGGAAACTCGACAAAGG 59.816 47.826 0.00 0.00 0.00 3.11
2521 4480 4.046462 TCGTTAGTGGAAACTCGACAAAG 58.954 43.478 0.00 0.00 0.00 2.77
2522 4481 4.044336 TCGTTAGTGGAAACTCGACAAA 57.956 40.909 0.00 0.00 0.00 2.83
2523 4482 3.713858 TCGTTAGTGGAAACTCGACAA 57.286 42.857 0.00 0.00 0.00 3.18
2524 4483 3.713858 TTCGTTAGTGGAAACTCGACA 57.286 42.857 0.00 0.00 0.00 4.35
2525 4484 4.505556 AGTTTTCGTTAGTGGAAACTCGAC 59.494 41.667 0.00 0.00 33.43 4.20
2526 4485 4.685924 AGTTTTCGTTAGTGGAAACTCGA 58.314 39.130 0.00 0.00 33.43 4.04
2527 4486 4.374707 CGAGTTTTCGTTAGTGGAAACTCG 60.375 45.833 26.16 26.16 41.92 4.18
2528 4487 4.084693 CCGAGTTTTCGTTAGTGGAAACTC 60.085 45.833 14.74 14.74 45.28 3.01
2529 4488 3.805971 CCGAGTTTTCGTTAGTGGAAACT 59.194 43.478 0.00 0.00 45.28 2.66
2530 4489 3.557185 ACCGAGTTTTCGTTAGTGGAAAC 59.443 43.478 0.00 0.00 45.28 2.78
2531 4490 3.795877 ACCGAGTTTTCGTTAGTGGAAA 58.204 40.909 0.00 0.00 45.28 3.13
2532 4491 3.457610 ACCGAGTTTTCGTTAGTGGAA 57.542 42.857 0.00 0.00 45.28 3.53
2533 4492 3.820467 TCTACCGAGTTTTCGTTAGTGGA 59.180 43.478 2.32 0.00 45.28 4.02
2534 4493 3.916776 GTCTACCGAGTTTTCGTTAGTGG 59.083 47.826 2.32 0.00 45.28 4.00
2535 4494 3.916776 GGTCTACCGAGTTTTCGTTAGTG 59.083 47.826 2.32 0.00 45.28 2.74
2536 4495 3.823304 AGGTCTACCGAGTTTTCGTTAGT 59.177 43.478 2.32 0.00 45.28 2.24
2537 4496 4.431661 AGGTCTACCGAGTTTTCGTTAG 57.568 45.455 0.00 0.00 45.28 2.34
2538 4497 4.853924 AAGGTCTACCGAGTTTTCGTTA 57.146 40.909 0.00 0.00 45.28 3.18
2539 4498 3.740631 AAGGTCTACCGAGTTTTCGTT 57.259 42.857 0.00 0.00 45.28 3.85
2540 4499 3.740631 AAAGGTCTACCGAGTTTTCGT 57.259 42.857 0.00 0.00 45.28 3.85
2541 4500 5.404946 TGATAAAGGTCTACCGAGTTTTCG 58.595 41.667 0.00 0.00 46.29 3.46
2542 4501 7.845066 AATGATAAAGGTCTACCGAGTTTTC 57.155 36.000 0.00 0.00 42.08 2.29
2543 4502 8.631480 AAAATGATAAAGGTCTACCGAGTTTT 57.369 30.769 0.00 0.00 42.08 2.43
2544 4503 8.631480 AAAAATGATAAAGGTCTACCGAGTTT 57.369 30.769 0.00 0.00 42.08 2.66
2545 4504 9.729281 TTAAAAATGATAAAGGTCTACCGAGTT 57.271 29.630 0.00 0.00 42.08 3.01
2546 4505 9.901172 ATTAAAAATGATAAAGGTCTACCGAGT 57.099 29.630 0.00 0.00 42.08 4.18
2573 4532 8.780249 CGACCTTTGACTTTCCTTATTTAAGAA 58.220 33.333 0.00 0.00 35.33 2.52
2574 4533 7.935210 ACGACCTTTGACTTTCCTTATTTAAGA 59.065 33.333 0.00 0.00 35.33 2.10
2575 4534 8.095937 ACGACCTTTGACTTTCCTTATTTAAG 57.904 34.615 0.00 0.00 0.00 1.85
2576 4535 7.173735 GGACGACCTTTGACTTTCCTTATTTAA 59.826 37.037 0.00 0.00 0.00 1.52
2577 4536 6.652062 GGACGACCTTTGACTTTCCTTATTTA 59.348 38.462 0.00 0.00 0.00 1.40
2578 4537 5.472478 GGACGACCTTTGACTTTCCTTATTT 59.528 40.000 0.00 0.00 0.00 1.40
2579 4538 5.001874 GGACGACCTTTGACTTTCCTTATT 58.998 41.667 0.00 0.00 0.00 1.40
2580 4539 4.576879 GGACGACCTTTGACTTTCCTTAT 58.423 43.478 0.00 0.00 0.00 1.73
2581 4540 3.553508 CGGACGACCTTTGACTTTCCTTA 60.554 47.826 1.72 0.00 0.00 2.69
2582 4541 2.805657 CGGACGACCTTTGACTTTCCTT 60.806 50.000 1.72 0.00 0.00 3.36
2583 4542 1.270147 CGGACGACCTTTGACTTTCCT 60.270 52.381 1.72 0.00 0.00 3.36
2584 4543 1.145803 CGGACGACCTTTGACTTTCC 58.854 55.000 1.72 0.00 0.00 3.13
2585 4544 2.059541 CTCGGACGACCTTTGACTTTC 58.940 52.381 1.72 0.00 0.00 2.62
2586 4545 1.270147 CCTCGGACGACCTTTGACTTT 60.270 52.381 1.72 0.00 0.00 2.66
2587 4546 0.317479 CCTCGGACGACCTTTGACTT 59.683 55.000 1.72 0.00 0.00 3.01
2588 4547 0.538977 TCCTCGGACGACCTTTGACT 60.539 55.000 1.72 0.00 0.00 3.41
2589 4548 0.531200 ATCCTCGGACGACCTTTGAC 59.469 55.000 1.72 0.00 0.00 3.18
2590 4549 0.530744 CATCCTCGGACGACCTTTGA 59.469 55.000 1.72 0.00 0.00 2.69
2591 4550 1.084370 GCATCCTCGGACGACCTTTG 61.084 60.000 1.72 0.00 0.00 2.77
2592 4551 1.218316 GCATCCTCGGACGACCTTT 59.782 57.895 1.72 0.00 0.00 3.11
2593 4552 2.722201 GGCATCCTCGGACGACCTT 61.722 63.158 1.72 0.00 0.00 3.50
2594 4553 3.148279 GGCATCCTCGGACGACCT 61.148 66.667 1.72 0.00 0.00 3.85
2595 4554 2.311688 AATGGCATCCTCGGACGACC 62.312 60.000 0.00 0.00 0.00 4.79
2596 4555 0.876342 GAATGGCATCCTCGGACGAC 60.876 60.000 0.00 0.00 0.00 4.34
2597 4556 1.043116 AGAATGGCATCCTCGGACGA 61.043 55.000 0.00 0.00 0.00 4.20
2598 4557 0.598680 GAGAATGGCATCCTCGGACG 60.599 60.000 0.00 0.00 0.00 4.79
2599 4558 0.465705 TGAGAATGGCATCCTCGGAC 59.534 55.000 9.27 0.00 0.00 4.79
2600 4559 0.465705 GTGAGAATGGCATCCTCGGA 59.534 55.000 9.27 0.00 0.00 4.55
2601 4560 0.467384 AGTGAGAATGGCATCCTCGG 59.533 55.000 9.27 0.00 0.00 4.63
2602 4561 1.411977 AGAGTGAGAATGGCATCCTCG 59.588 52.381 9.27 0.00 0.00 4.63
2603 4562 3.557228 AAGAGTGAGAATGGCATCCTC 57.443 47.619 6.80 6.80 0.00 3.71
2604 4563 3.618351 CAAAGAGTGAGAATGGCATCCT 58.382 45.455 0.00 0.00 0.00 3.24
2605 4564 2.098770 GCAAAGAGTGAGAATGGCATCC 59.901 50.000 0.00 0.00 0.00 3.51
2606 4565 2.098770 GGCAAAGAGTGAGAATGGCATC 59.901 50.000 0.00 0.00 36.65 3.91
2607 4566 2.097825 GGCAAAGAGTGAGAATGGCAT 58.902 47.619 0.00 0.00 36.65 4.40
2608 4567 1.538047 GGCAAAGAGTGAGAATGGCA 58.462 50.000 0.00 0.00 36.65 4.92
2609 4568 0.449388 CGGCAAAGAGTGAGAATGGC 59.551 55.000 0.00 0.00 0.00 4.40
2610 4569 2.005451 CTCGGCAAAGAGTGAGAATGG 58.995 52.381 0.00 0.00 33.75 3.16
2619 4578 1.634702 GAGCAGTACTCGGCAAAGAG 58.365 55.000 7.83 2.16 43.56 2.85
2620 4579 3.814577 GAGCAGTACTCGGCAAAGA 57.185 52.632 7.83 0.00 37.23 2.52
2628 4587 1.975660 AGATCCTCCGAGCAGTACTC 58.024 55.000 0.00 0.00 42.47 2.59
2629 4588 2.028130 CAAGATCCTCCGAGCAGTACT 58.972 52.381 0.00 0.00 0.00 2.73
2630 4589 1.067821 CCAAGATCCTCCGAGCAGTAC 59.932 57.143 0.00 0.00 0.00 2.73
2631 4590 1.403814 CCAAGATCCTCCGAGCAGTA 58.596 55.000 0.00 0.00 0.00 2.74
2632 4591 1.965754 GCCAAGATCCTCCGAGCAGT 61.966 60.000 0.00 0.00 0.00 4.40
2633 4592 1.227497 GCCAAGATCCTCCGAGCAG 60.227 63.158 0.00 0.00 0.00 4.24
2634 4593 1.552799 TTGCCAAGATCCTCCGAGCA 61.553 55.000 0.00 0.00 0.00 4.26
2635 4594 0.392998 TTTGCCAAGATCCTCCGAGC 60.393 55.000 0.00 0.00 0.00 5.03
2636 4595 1.339055 TGTTTGCCAAGATCCTCCGAG 60.339 52.381 0.00 0.00 0.00 4.63
2637 4596 0.690192 TGTTTGCCAAGATCCTCCGA 59.310 50.000 0.00 0.00 0.00 4.55
2638 4597 1.755179 ATGTTTGCCAAGATCCTCCG 58.245 50.000 0.00 0.00 0.00 4.63
2639 4598 3.766051 AGAAATGTTTGCCAAGATCCTCC 59.234 43.478 0.00 0.00 0.00 4.30
2640 4599 5.166398 CAAGAAATGTTTGCCAAGATCCTC 58.834 41.667 0.00 0.00 0.00 3.71
2641 4600 4.590222 ACAAGAAATGTTTGCCAAGATCCT 59.410 37.500 0.00 0.00 40.06 3.24
2642 4601 4.886579 ACAAGAAATGTTTGCCAAGATCC 58.113 39.130 0.00 0.00 40.06 3.36
2672 4631 1.202891 GCAAAAGGGGGTCACACTAGT 60.203 52.381 0.00 0.00 0.00 2.57
2673 4632 1.534729 GCAAAAGGGGGTCACACTAG 58.465 55.000 0.00 0.00 0.00 2.57
2674 4633 0.111639 GGCAAAAGGGGGTCACACTA 59.888 55.000 0.00 0.00 0.00 2.74
2675 4634 1.152546 GGCAAAAGGGGGTCACACT 60.153 57.895 0.00 0.00 0.00 3.55
2676 4635 2.561037 CGGCAAAAGGGGGTCACAC 61.561 63.158 0.00 0.00 0.00 3.82
2677 4636 2.203422 CGGCAAAAGGGGGTCACA 60.203 61.111 0.00 0.00 0.00 3.58
2678 4637 1.971695 CTCGGCAAAAGGGGGTCAC 60.972 63.158 0.00 0.00 0.00 3.67
2679 4638 2.002018 AACTCGGCAAAAGGGGGTCA 62.002 55.000 0.00 0.00 0.00 4.02
2680 4639 1.228459 AACTCGGCAAAAGGGGGTC 60.228 57.895 0.00 0.00 0.00 4.46
2681 4640 1.228459 GAACTCGGCAAAAGGGGGT 60.228 57.895 0.00 0.00 0.00 4.95
2682 4641 1.228429 TGAACTCGGCAAAAGGGGG 60.228 57.895 0.00 0.00 0.00 5.40
2683 4642 0.250727 TCTGAACTCGGCAAAAGGGG 60.251 55.000 0.00 0.00 0.00 4.79
2684 4643 1.160137 CTCTGAACTCGGCAAAAGGG 58.840 55.000 0.00 0.00 0.00 3.95
2685 4644 0.519077 GCTCTGAACTCGGCAAAAGG 59.481 55.000 0.00 0.00 0.00 3.11
2686 4645 1.462670 GAGCTCTGAACTCGGCAAAAG 59.537 52.381 6.43 0.00 0.00 2.27
2687 4646 1.512926 GAGCTCTGAACTCGGCAAAA 58.487 50.000 6.43 0.00 0.00 2.44
2688 4647 3.217242 GAGCTCTGAACTCGGCAAA 57.783 52.632 6.43 0.00 0.00 3.68
2689 4648 4.996976 GAGCTCTGAACTCGGCAA 57.003 55.556 6.43 0.00 0.00 4.52
2694 4653 1.285578 GATTGCCGAGCTCTGAACTC 58.714 55.000 12.85 0.00 0.00 3.01
2695 4654 0.459237 CGATTGCCGAGCTCTGAACT 60.459 55.000 12.85 0.00 41.76 3.01
2696 4655 0.737715 ACGATTGCCGAGCTCTGAAC 60.738 55.000 12.85 0.00 41.76 3.18
2697 4656 0.037326 AACGATTGCCGAGCTCTGAA 60.037 50.000 12.85 0.00 41.76 3.02
2698 4657 0.458543 GAACGATTGCCGAGCTCTGA 60.459 55.000 12.85 0.00 41.76 3.27
2699 4658 0.459237 AGAACGATTGCCGAGCTCTG 60.459 55.000 12.85 6.45 41.76 3.35
2700 4659 1.103803 TAGAACGATTGCCGAGCTCT 58.896 50.000 12.85 0.00 41.76 4.09
2701 4660 2.055100 GATAGAACGATTGCCGAGCTC 58.945 52.381 2.73 2.73 41.76 4.09
2702 4661 1.683917 AGATAGAACGATTGCCGAGCT 59.316 47.619 0.00 0.00 41.76 4.09
2703 4662 2.141535 AGATAGAACGATTGCCGAGC 57.858 50.000 0.00 0.00 41.76 5.03
2704 4663 7.476667 AGAATATAGATAGAACGATTGCCGAG 58.523 38.462 0.00 0.00 41.76 4.63
2705 4664 7.392494 AGAATATAGATAGAACGATTGCCGA 57.608 36.000 0.00 0.00 41.76 5.54
2706 4665 8.467402 AAAGAATATAGATAGAACGATTGCCG 57.533 34.615 0.00 0.00 45.44 5.69
2716 4675 9.836864 TGCAGCTTTGAAAAGAATATAGATAGA 57.163 29.630 6.98 0.00 38.28 1.98
2720 4679 9.630098 CTTTTGCAGCTTTGAAAAGAATATAGA 57.370 29.630 13.05 0.00 38.44 1.98
2721 4680 9.415544 ACTTTTGCAGCTTTGAAAAGAATATAG 57.584 29.630 20.66 1.98 38.44 1.31
2722 4681 9.410556 GACTTTTGCAGCTTTGAAAAGAATATA 57.589 29.630 20.66 0.00 38.44 0.86
2723 4682 7.927629 TGACTTTTGCAGCTTTGAAAAGAATAT 59.072 29.630 20.66 5.77 38.44 1.28
2724 4683 7.264221 TGACTTTTGCAGCTTTGAAAAGAATA 58.736 30.769 20.66 9.19 38.44 1.75
2725 4684 6.108015 TGACTTTTGCAGCTTTGAAAAGAAT 58.892 32.000 20.66 6.55 38.44 2.40
2726 4685 5.477510 TGACTTTTGCAGCTTTGAAAAGAA 58.522 33.333 20.66 10.64 38.44 2.52
2727 4686 5.070770 TGACTTTTGCAGCTTTGAAAAGA 57.929 34.783 20.66 4.66 38.44 2.52
2728 4687 4.269363 CCTGACTTTTGCAGCTTTGAAAAG 59.731 41.667 15.38 15.38 40.82 2.27
2729 4688 4.081752 TCCTGACTTTTGCAGCTTTGAAAA 60.082 37.500 0.00 0.00 32.06 2.29
2730 4689 3.446873 TCCTGACTTTTGCAGCTTTGAAA 59.553 39.130 0.00 0.00 32.06 2.69
2731 4690 3.023119 TCCTGACTTTTGCAGCTTTGAA 58.977 40.909 0.00 0.00 32.06 2.69
2732 4691 2.620115 CTCCTGACTTTTGCAGCTTTGA 59.380 45.455 0.00 0.00 32.06 2.69
2733 4692 2.360165 ACTCCTGACTTTTGCAGCTTTG 59.640 45.455 0.00 0.00 32.06 2.77
2734 4693 2.620585 GACTCCTGACTTTTGCAGCTTT 59.379 45.455 0.00 0.00 32.06 3.51
2735 4694 2.225467 GACTCCTGACTTTTGCAGCTT 58.775 47.619 0.00 0.00 32.06 3.74
2736 4695 1.141657 TGACTCCTGACTTTTGCAGCT 59.858 47.619 0.00 0.00 32.06 4.24
2737 4696 1.265365 GTGACTCCTGACTTTTGCAGC 59.735 52.381 0.00 0.00 32.06 5.25
2738 4697 2.564771 TGTGACTCCTGACTTTTGCAG 58.435 47.619 0.00 0.00 0.00 4.41
2739 4698 2.708216 TGTGACTCCTGACTTTTGCA 57.292 45.000 0.00 0.00 0.00 4.08
2740 4699 2.291741 CCTTGTGACTCCTGACTTTTGC 59.708 50.000 0.00 0.00 0.00 3.68
2741 4700 3.313526 CACCTTGTGACTCCTGACTTTTG 59.686 47.826 0.00 0.00 35.23 2.44
2742 4701 3.054361 ACACCTTGTGACTCCTGACTTTT 60.054 43.478 0.49 0.00 36.96 2.27
2743 4702 2.505819 ACACCTTGTGACTCCTGACTTT 59.494 45.455 0.49 0.00 36.96 2.66
2744 4703 2.119495 ACACCTTGTGACTCCTGACTT 58.881 47.619 0.49 0.00 36.96 3.01
2745 4704 1.794714 ACACCTTGTGACTCCTGACT 58.205 50.000 0.49 0.00 36.96 3.41
2746 4705 2.213499 CAACACCTTGTGACTCCTGAC 58.787 52.381 0.49 0.00 36.96 3.51
2747 4706 1.475034 GCAACACCTTGTGACTCCTGA 60.475 52.381 0.49 0.00 36.96 3.86
2748 4707 0.947244 GCAACACCTTGTGACTCCTG 59.053 55.000 0.49 0.00 36.96 3.86
2749 4708 0.179018 GGCAACACCTTGTGACTCCT 60.179 55.000 0.49 0.00 36.96 3.69
2750 4709 0.465460 TGGCAACACCTTGTGACTCC 60.465 55.000 0.49 0.00 46.17 3.85
2751 4710 3.094386 TGGCAACACCTTGTGACTC 57.906 52.632 0.49 0.00 46.17 3.36
2783 4742 2.938451 TGTTGTTGAGCACTGAACTCAG 59.062 45.455 5.15 5.15 44.55 3.35
2784 4743 2.984562 TGTTGTTGAGCACTGAACTCA 58.015 42.857 1.79 0.00 42.30 3.41
2785 4744 3.790123 GCTTGTTGTTGAGCACTGAACTC 60.790 47.826 1.79 0.00 38.73 3.01
2786 4745 2.098117 GCTTGTTGTTGAGCACTGAACT 59.902 45.455 1.79 0.00 38.73 3.01
2787 4746 2.098117 AGCTTGTTGTTGAGCACTGAAC 59.902 45.455 0.00 0.00 41.31 3.18
2788 4747 2.368439 AGCTTGTTGTTGAGCACTGAA 58.632 42.857 0.00 0.00 41.31 3.02
2789 4748 2.042686 AGCTTGTTGTTGAGCACTGA 57.957 45.000 0.00 0.00 41.31 3.41
2790 4749 2.159338 ACAAGCTTGTTGTTGAGCACTG 60.159 45.455 26.36 0.00 41.31 3.66
2791 4750 2.094675 ACAAGCTTGTTGTTGAGCACT 58.905 42.857 26.36 0.00 41.31 4.40
2792 4751 2.566952 ACAAGCTTGTTGTTGAGCAC 57.433 45.000 26.36 0.00 41.31 4.40
2803 4762 2.604614 GCCAAACTCGGTAACAAGCTTG 60.605 50.000 24.84 24.84 0.00 4.01
2808 4767 1.508808 GGCGCCAAACTCGGTAACAA 61.509 55.000 24.80 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.